RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10366
(340 letters)
>gnl|CDD|111626 pfam02750, Synapsin_C, Synapsin, ATP binding domain. Ca dependent
ATP binding in this ATP grasp fold. Function unknown.
Length = 203
Score = 328 bits (841), Expect = e-113
Identities = 131/201 (65%), Positives = 165/201 (82%), Gaps = 5/201 (2%)
Query: 25 NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-----YPVVFKIGHA 79
N+L +YNF DKPWVFA L+Q+Q+KLG E FPLI+ TYYPN KEM +PVV KIGHA
Sbjct: 1 NSLHSIYNFCDKPWVFAQLIQIQKKLGAEKFPLIEQTYYPNHKEMLTTPTFPVVVKIGHA 60
Query: 80 HSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISG 139
HSG GKV+V+++ DFQD+A VVA+ TY TTEP+IDSK+D+ VQKIG+NYKA+ R SISG
Sbjct: 61 HSGMGKVKVDNHHDFQDIASVVALTKTYATTEPFIDSKYDIRVQKIGNNYKAYMRTSISG 120
Query: 140 NWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALS 199
NWK NTGSAMLEQI M++ YKLW+D +E+FGGLDICA+E + GKDG+++IIEV DS++
Sbjct: 121 NWKANTGSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVEALHGKDGRDYIIEVMDSSMP 180
Query: 200 LMGETQEEDRRFIVDLVIQKM 220
L+GE QEEDR+ I +LV+ KM
Sbjct: 181 LIGEHQEEDRQLIAELVVSKM 201
Score = 60.7 bits (147), Expect = 7e-11
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 282
DG+++IIEV DS++ L+GE QEEDR+ I +LV+ KM
Sbjct: 166 DGRDYIIEVMDSSMPLIGEHQEEDRQLIAELVVSKM 201
>gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family. This
family, related to bacterial glutathione synthetases,
contains at least two different alpha-L-glutamate
ligases. One is RimK, as in E. coli, which adds
additional Glu residues to the native Glu-Glu C-terminus
of ribosomal protein S6, but not to Lys-Glu mutants.
Most species with a member of this subfamily lack an S6
homolog ending in Glu-Glu, however. Members in
Methanococcus jannaschii act instead as a
tetrahydromethanopterin:alpha-l-glutamate ligase
(MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase
(MJ1001).
Length = 277
Score = 40.4 bits (95), Expect = 7e-04
Identities = 43/202 (21%), Positives = 70/202 (34%), Gaps = 28/202 (13%)
Query: 12 LLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY------PN 65
+ G+P IN+ + N DK L K P
Sbjct: 65 VARYLESLGVPVINSSDAILNAGDKFLTSQ-------LLAKAGLPQPRTGLAGSPEEALK 117
Query: 66 FKEM--YPVVFKIGHAHSGFGKVRVESNQDFQDMA----GVVAVANTYCTTEPYIDSK-- 117
E +PVV K G Q + + + N + E YI
Sbjct: 118 LIEEIGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQE-YIKKPGG 176
Query: 118 FDVHVQKIGSNYKAFQRKSISGNWKTNT---GSAMLEQIPMTDHYKLWIDEVAELFGGLD 174
D+ V +G A + SG+W+TN G A E P+T+ + + A+ G LD
Sbjct: 177 RDIRVFVVGDEVIAAIYRITSGHWRTNLARGGKA--EPCPLTEEIEELAIKAAKALG-LD 233
Query: 175 ICALEIIVGKDGKEHIIEVNDS 196
+ ++++ +D + EVN +
Sbjct: 234 VVGIDLLESEDRGLLVNEVNPN 255
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
modification enzyme (glutaminyl transferase) [Coenzyme
metabolism / Translation, ribosomal structure and
biogenesis].
Length = 318
Score = 40.0 bits (94), Expect = 0.001
Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 26/194 (13%)
Query: 20 GIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM---YPVVFKI 76
G+P IN Q + ++K LL D F +PVV K
Sbjct: 104 GVPVINDPQSIRRCRNK-LYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLGFPVVLKP 162
Query: 77 GHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF---- 132
G G VE + D + + T + I ++ + K + +
Sbjct: 163 LDGSGGRGVFLVE-DADPE--LLSLLETLTQEGRKLIIVQEY---IPKAKRDDRRVLVGG 216
Query: 133 ---------QRKSISGNWKTNTG-SAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIV 182
R SG++++N E +T+ + + A GL + ++II
Sbjct: 217 GEVVAIYALARIPASGDFRSNLARGGRAEPCELTEEEEELAVKAAPAL-GLGLVGVDIIE 275
Query: 183 GKDGKEHIIEVNDS 196
KDG ++ EVN S
Sbjct: 276 DKDG-LYVTEVNVS 288
>gnl|CDD|232884 TIGR00229, sensory_box, PAS domain S-box. The PAS domain was
previously described. This sensory box, or S-box domain
occupies the central portion of the PAS domain but is
more widely distributed. It is often tandemly repeated.
Known prosthetic groups bound in the S-box domain
include heme in the oxygen sensor FixL, FAD in the redox
potential sensor NifL, and a 4-hydroxycinnamyl
chromophore in photoactive yellow protein. Proteins
containing the domain often contain other regulatory
domains such as response regulator or sensor histidine
kinase domains. Other S-box proteins include
phytochromes and the aryl hydrocarbon receptor nuclear
translocator [Regulatory functions, Small molecule
interactions].
Length = 124
Score = 35.0 bits (81), Expect = 0.013
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 23/98 (23%)
Query: 180 IIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPD---------- 229
I++ +G I+ VN + + G + EE + V L+P +
Sbjct: 17 IVIDLEGN--ILYVNPAFEEIFGYSAEE---------LIGRNVLELIPEEDREEVRERIE 65
Query: 230 --IESTIEVRKVEKTYIPNDGKEHIIEVNDSALSLMGE 265
+E E E+ DG E +EV+ S + G
Sbjct: 66 RRLEGEREPVSEERRVRRKDGSEIWVEVSVSPIRTNGG 103
>gnl|CDD|153039 pfam12605, CK1gamma_C, Casein kinase 1 gamma C terminal. This
domain family is found in eukaryotes, and is typically
between 54 and 99 amino acids in length. The family is
found in association with pfam00069. CK1gamma is a
membrane-bound member of the CK1 family.
Gain-of-function and loss-of-function experiments show
that CK1gamma is both necessary and sufficient to
transduce LRP6 signalling in vertebrates and Drosophila
cells.
Length = 71
Score = 32.6 bits (74), Expect = 0.032
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 276 DLVIQKMQSSTMSSMSQPSAAQQRANFGRQSSQQSVTSTAGQIGED 321
D +S+S+PS A Q N S Q+++ST G++ D
Sbjct: 16 DPSSSARSRQHHNSVSRPSPASQSRN-RHGGSSQALSSTNGELNTD 60
>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor.
Length = 439
Score = 31.6 bits (72), Expect = 0.62
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 207 EDRRFIVDLVIQKMQ-----VSVLVPPDIESTIEVRKVEKTYIPNDGKEHIIEVNDS-AL 260
R + VDL+ + + V +L+ D+ +E + VE +Y+ GK H + N+ AL
Sbjct: 68 RSRDWNVDLIPKFLMANGELVKLLIHTDVTRYLEFKAVEGSYVYKGGKIHKVPANEMEAL 127
Query: 261 S--LMGETQEEDRRF 273
S LMG E RRF
Sbjct: 128 SSPLMGIF--EKRRF 140
>gnl|CDD|218438 pfam05108, DUF690, Protein of unknown function (DUF690). This
family contains several uncharacterized bacterial
membrane proteins.
Length = 481
Score = 30.9 bits (70), Expect = 1.1
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 218 QKMQVSVLV-PPDIESTIE---------VRKVEKTYIPNDGKEHIIEVNDSALSL 262
+QV+V+ P + + V T++ GK +I++ D A++
Sbjct: 161 DGVQVTVIAGPLEDTGRAQVLQSEQAVLVSYGGSTWLLWGGKRSVIDLADRAVTS 215
>gnl|CDD|216228 pfam00989, PAS, PAS fold. The PAS fold corresponds to the
structural domain that has previously been defined as
PAS and PAC motifs. The PAS fold appears in archaea,
eubacteria and eukarya.
Length = 113
Score = 28.9 bits (65), Expect = 1.3
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
Query: 181 IVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPD----------- 229
I D I+ VN +A L+G ++EE VI K + ++ D
Sbjct: 14 IFVVDEDGRILYVNAAAEELLGLSREE--------VIGKSLLDLIPEDDDAEVAELLRQA 65
Query: 230 IESTIEVRKVEKTYIPNDGKEHIIEVNDSALSLMGETQEEDRRFIV 275
+ E R E ++ DG+ +EV S + + E R F+
Sbjct: 66 LLQGEESRGFEVSFRVPDGRPRHVEVR---ASPVRDAGGEVRGFLG 108
>gnl|CDD|238075 cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria
and eukarya. Probably the most surprising identification
of a PAS domain was that in EAG-like K+-channels. PAS
domains have been found to bind ligands, and to act as
sensors for light and oxygen in signal transduction.
Length = 103
Score = 28.8 bits (64), Expect = 1.3
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 23/106 (21%)
Query: 180 IIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIE-------- 231
I++ DG+ I+ N +A L+G + EE +I K + ++ P D E
Sbjct: 6 IVLDLDGR--ILYANPAAEQLLGYSPEE--------LIGKSLLDLIHPEDREELRERLEN 55
Query: 232 --STIEVRKVEKTYIPNDGKEHIIEVNDSALSLMGETQEEDRRFIV 275
S E +E DG + V+ L+ + + E +
Sbjct: 56 LLSGGEPVTLEVRLRRKDGSVIWVLVS---LTPIRDEGGEVIGLLG 98
>gnl|CDD|222120 pfam13426, PAS_9, PAS domain.
Length = 101
Score = 28.1 bits (63), Expect = 2.2
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 180 IIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTIEVRK- 238
+++ DG+ I+ ND+AL L+G T+EE ++ I+ + + E +
Sbjct: 2 LVLDPDGR--IVYANDAALRLLGYTREE----LLGKSIRDLFGPGDDEEAVARLREALRN 55
Query: 239 -----VEKTYIPNDGKEHIIEVNDSALSLMGETQEEDRRFIV 275
VE DG+ + V+ S + + E +
Sbjct: 56 GGEVEVELELRRKDGEPFPVLVS---ASPVRDEDGEVVGIVG 94
>gnl|CDD|150555 pfam09895, DUF2122, RecB-family nuclease (DUF2122). This domain,
found in various hypothetical archaeal proteins, has no
known function.
Length = 105
Score = 27.6 bits (62), Expect = 3.8
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 219 KMQVSVLVPPDIESTIEVRKVEKTY-IPNDGKEHIIEVND 257
K+ S+LV PD++ IE+ K + Y + + EV
Sbjct: 17 KLGKSLLVLPDLKDAIELLKPDVVYLLSRAAEGIKKEVLK 56
>gnl|CDD|226566 COG4080, COG4080, SpoU rRNA Methylase family enzyme [General
function prediction only].
Length = 147
Score = 27.8 bits (62), Expect = 4.5
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 16/73 (21%)
Query: 219 KMQVSVLVPPDIESTIEVRKVEKTYI------------PNDGKEHIIEV----NDSALSL 262
K+ VLV PD++ +EV + + T + PN+ E + + + L+
Sbjct: 54 KLGKPVLVFPDLDDALEVLRPDVTLLVGSASEGEKKLDPNEKIEGRVLIVFSGAEPGLTK 113
Query: 263 MGETQEEDRRFIV 275
D R+IV
Sbjct: 114 RELELGADLRYIV 126
>gnl|CDD|182167 PRK09956, PRK09956, hypothetical protein; Provisional.
Length = 308
Score = 28.5 bits (63), Expect = 5.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 45 QLQRKLGKENFPLIDITYYPN 65
QL R+L E FPL+DIT P+
Sbjct: 144 QLARQLYTEAFPLVDITIVPD 164
>gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional.
Length = 273
Score = 28.3 bits (64), Expect = 5.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 22/63 (34%)
Query: 163 IDEVAELFGGLDICALEIIVGKDGKEHIIEVND-SALSLMGETQEEDRRFIVDLVIQKMQ 221
+ + E FGG+DIC VN+ SA++L G +RF DL+ Q
Sbjct: 81 VAKAVERFGGIDIC----------------VNNASAINLTGTEDTPMKRF--DLM---QQ 119
Query: 222 VSV 224
++V
Sbjct: 120 INV 122
>gnl|CDD|225990 COG3459, COG3459, Cellobiose phosphorylase [Carbohydrate transport
and metabolism].
Length = 1056
Score = 28.5 bits (64), Expect = 6.1
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 205 QEEDRRFIVDLVIQKMQVSVLVPPDIESTIEVRKVEKTYIPNDGKEHIIEVNDSALSLMG 264
QE R D V + I+S E ++ +P+ +EHI V M
Sbjct: 162 QERSRGLPADQVGVNERAVSYAQDGIDSFCENYRL--RGLPDGPREHIFAVRR---DQME 216
Query: 265 ETQ 267
E
Sbjct: 217 EET 219
>gnl|CDD|220247 pfam09451, ATG27, Autophagy-related protein 27.
Length = 265
Score = 28.2 bits (63), Expect = 6.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 174 DICALEIIVGKDGKEHIIEVNDSALSLMGETQEED 208
IC L + DGK+ + +V D S G +EE
Sbjct: 74 RICGLTYVYLPDGKDIVTQVVDFGKSGQGSVEEEA 108
>gnl|CDD|188522 TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase
WcaI. This gene is one of the glycosyl transferases
involved in the biosynthesis of colanic acid, an
exopolysaccharide expressed in Enterobacteraceae
species.
Length = 407
Score = 28.0 bits (62), Expect = 7.4
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 8 DHKNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFP----LIDITY 62
D K +L NIG + N + D+PW+FA + Q K E L ++ +
Sbjct: 230 DKKIILYSGNIGEKQGLENVIDAAARLTDRPWIFAIVGQGGGKARLEKMARERGLTNVKF 289
Query: 63 YP-NFKEMYPVVFKIGHAH 80
+P E P + K+G H
Sbjct: 290 FPLQPYEALPALLKMGDCH 308
>gnl|CDD|214827 smart00807, AKAP_110, A-kinase anchor protein 110 kDa. This family
consists of several mammalian protein kinase A anchoring
protein 3 (PRKA3) or A-kinase anchor protein 110 kDa
(AKAP 110) sequences. Agents that increase intracellular
cAMP are potent stimulators of sperm motility. Anchoring
inhibitor peptides, designed to disrupt the interaction
of the cAMP-dependent protein kinase A (PKA) with A
kinase-anchoring proteins (AKAPs), are potent inhibitors
of sperm motility. PKA anchoring is a key biochemical
mechanism controlling motility. AKAP110 shares
compartments with both RI and RII isoforms of PKA and
may function as a regulator of both motility- and
head-associated functions such as capacitation and the
acrosome reaction.
Length = 851
Score = 28.1 bits (62), Expect = 8.4
Identities = 10/59 (16%), Positives = 26/59 (44%)
Query: 265 ETQEEDRRFIVDLVIQKMQSSTMSSMSQPSAAQQRANFGRQSSQQSVTSTAGQIGEDSE 323
E++++D +V I+ + S T+ ++ + ++ S+A ++ E E
Sbjct: 585 ESEKKDLSSVVFNFIRNLLSETIFKCDDSCESKAPEQEENKLCERPRASSAAKLSERDE 643
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,009,064
Number of extensions: 1625326
Number of successful extensions: 1508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1500
Number of HSP's successfully gapped: 32
Length of query: 340
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 242
Effective length of database: 6,590,910
Effective search space: 1595000220
Effective search space used: 1595000220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.9 bits)