RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10366
(340 letters)
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus
norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A
1aux_A*
Length = 309
Score = 265 bits (679), Expect = 6e-88
Identities = 133/220 (60%), Positives = 173/220 (78%), Gaps = 5/220 (2%)
Query: 7 QDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF 66
+D ++L++G G+PSIN+L+ +YNF DKPWVFA ++ + + LG E FPLI+ TYYPN
Sbjct: 85 EDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNH 144
Query: 67 KEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVH 121
+EM +PVV KIGHAHSG GKV+VE++ DFQD+A VVA+ TY T EP+ID+K+D+
Sbjct: 145 REMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIR 204
Query: 122 VQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEII 181
VQKIG+NYKA+ R SISGNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA++ +
Sbjct: 205 VQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAV 264
Query: 182 VGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQ 221
GKDGK++I EV D ++ L+GE Q EDR+ I DLVI KM
Sbjct: 265 HGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMN 304
Score = 55.2 bits (132), Expect = 8e-09
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 246 NDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQS 284
DGK++I EV D ++ L+GE Q EDR+ I DLVI KM
Sbjct: 267 KDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQ 305
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
vesicle T structural genomics, structural genomics
consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo
sapiens}
Length = 344
Score = 255 bits (651), Expect = 4e-83
Identities = 122/220 (55%), Positives = 171/220 (77%), Gaps = 5/220 (2%)
Query: 7 QDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF 66
+D+++L++G GG+P++N+L VYNF KPWVF+ L+++ LG E FPL++ T++PN
Sbjct: 102 EDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNH 161
Query: 67 KEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVH 121
K M +PVV K+GHAH+G GK++VE+ DFQD+ VVA+A TY TTE +IDSK+D+
Sbjct: 162 KPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIR 221
Query: 122 VQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEII 181
+QKIGSNYKA+ R SISGNWK NTGSAMLEQ+ MT+ Y+LW+D +E+FGGLDICA++ +
Sbjct: 222 IQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAV 281
Query: 182 VGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQ 221
KDG+++IIEV DS++ L+GE EEDR+ + DLV+ KM
Sbjct: 282 HSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMS 321
Score = 60.6 bits (146), Expect = 2e-10
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 246 NDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQS-----STMSSMSQPSAAQQRA 300
DG+++IIEV DS++ L+GE EEDR+ + DLV+ KM T S +P A Q ++
Sbjct: 284 KDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPSPLRPWAPQIKS 343
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 244 bits (623), Expect = 4e-78
Identities = 136/224 (60%), Positives = 176/224 (78%), Gaps = 5/224 (2%)
Query: 2 SYVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT 61
S D+++L++G GIPS+N+L VYNF DKPWVFA +++L +KLG E FPLID T
Sbjct: 192 SMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQT 251
Query: 62 YYPNFKEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDS 116
+YPN KEM YPVV K+GHAHSG GKV+V++ DFQD+A VVA+ TY T EP+ID+
Sbjct: 252 FYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDA 311
Query: 117 KFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDIC 176
K+DV VQKIG NYKA+ R S+SGNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDIC
Sbjct: 312 KYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDIC 371
Query: 177 ALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
A+E + GKDG++HIIEV S++ L+G+ Q+ED++ IV+LV+ KM
Sbjct: 372 AVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKM 415
Score = 51.0 bits (121), Expect = 2e-07
Identities = 19/37 (51%), Positives = 30/37 (81%)
Query: 246 NDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 282
DG++HIIEV S++ L+G+ Q+ED++ IV+LV+ KM
Sbjct: 379 KDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKM 415
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 45.5 bits (108), Expect = 1e-05
Identities = 41/199 (20%), Positives = 65/199 (32%), Gaps = 32/199 (16%)
Query: 16 FNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM------ 69
GIP +N + + DK L K P T +E
Sbjct: 69 LTALGIPVVNRPEVIEACGDK------WATSVA-LAKAGLPQPK-TALATDREEALRLME 120
Query: 70 ---YPVVFKIGHAHSGFG------KVRVESNQDFQDMAGVVAVANTYCTTEPYIDSK-FD 119
YPVV K G +++ G Y + Y++ D
Sbjct: 121 AFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYI--QEYVEKPGRD 178
Query: 120 VHVQKIGSNY-KAFQRKSISGNWKTNTGS-AMLEQIPMTDHYKLWIDEVAELFGGLDICA 177
+ V +G A R+ S +W TNT E P+T+ + AE G + A
Sbjct: 179 IRVFVVGERAIAAIYRR--SAHWITNTARGGQAENCPLTEEVARLSVKAAEAV-GGGVVA 235
Query: 178 LEIIVGKDGKEHIIEVNDS 196
+++ + G + EVN +
Sbjct: 236 VDLFESERGL-LVNEVNHT 253
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.8 bits (89), Expect = 7e-04
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 17/40 (42%)
Query: 203 ETQEEDRRFIVDLVIQKMQVSV-LVPPD------IESTIE 235
E Q ++K+Q S+ L D I++T+E
Sbjct: 18 EKQA----------LKKLQASLKLYADDSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 1.3
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 12/34 (35%)
Query: 265 ETQEEDRRFIVDLVIQKMQSS--TMSSMSQPSAA 296
E Q ++K+Q+S + S P+ A
Sbjct: 18 EKQA----------LKKLQASLKLYADDSAPALA 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.001
Identities = 48/341 (14%), Positives = 89/341 (26%), Gaps = 107/341 (31%)
Query: 3 YVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHL------LQLQRKLGKENFP 56
+ + ++N LL + L V N + L R
Sbjct: 237 LLKSKPYENCLL---------V--LLNVQN----AKAWNAFNLSCKILLTTR-----FKQ 276
Query: 57 LIDITYYPNFKEMYPVVFKIGHAHSGFGKVRVES------NQDFQDMAGVVAVANTYCTT 110
+ D + H V+S + QD+ V TT
Sbjct: 277 VTDF-----LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV------LTT 325
Query: 111 EPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMT----------DHYK 160
P + I + + + NWK + I + +
Sbjct: 326 NP-------RRLSIIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 161 ------------------LWID---EVAELFGGLDICALEIIVGKDGKEHIIEVNDSALS 199
+W D + ++ +V K KE I + L
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 200 LMGETQEEDR--RFIVD--LVIQKMQVSVLVPPDIESTIEVRKVEKTYIPNDGKEHIIEV 255
L + + E R IVD + + L+PP ++ Y + H+ +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ----------YFYSHIGHHLKNI 484
Query: 256 NDSALSLMGETQEEDRRFIVDL--VIQKMQSSTMSSMSQPS 294
E R +D + QK++ + + + S
Sbjct: 485 E------HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein
structure initiati northeast structural genomics
consortium; 2.60A {Desulfitobacterium hafniense}
Length = 126
Score = 35.7 bits (83), Expect = 0.005
Identities = 9/100 (9%), Positives = 27/100 (27%), Gaps = 19/100 (19%)
Query: 177 ALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTI-- 234
++I+ + + ++ N + +G T EE + M + + +
Sbjct: 8 IEDMILIINREGRLLYANTAVPKKLGYTHEE---------LMSMHILTITSAGKMAEGEK 58
Query: 235 --------EVRKVEKTYIPNDGKEHIIEVNDSALSLMGET 266
+ + + +G + E
Sbjct: 59 ILAELFAGKKESLPLSLEKKEGTSIPAKARIWQGKWHNEP 98
Score = 26.4 bits (59), Expect = 7.6
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 247 DGKEHIIEVNDSALSLMGETQEE 269
+ + ++ N + +G T EE
Sbjct: 16 NREGRLLYANTAVPKKLGYTHEE 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.013
Identities = 40/273 (14%), Positives = 82/273 (30%), Gaps = 98/273 (35%)
Query: 21 IPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT------------------- 61
P I +Q AH + + LG L
Sbjct: 238 CPLIGVIQ-----------LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 62 -----YYPNFKEMYPVVFKIG-HAHSGFGKVRVESN--QDFQD--------MAGVVAVAN 105
++ + ++ V+F IG + + + + +D + M + +
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-- 344
Query: 106 TYCTTEPYIDSKFDVHV---QKIG-SNYKAFQRKSISG-------------NWKTNTGSA 148
T + Y++ K + H+ +++ S + +SG K +G
Sbjct: 345 TQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG-- 401
Query: 149 MLEQ--IPMTDHYKLWIDEVAELFGGLDI----------CALEIIVGKDGKEHIIEVNDS 196
L+Q IP ++ KL F L + A ++I KD ++ + N
Sbjct: 402 -LDQSRIPFSER-KLKFSNR---F--LPVASPFHSHLLVPASDLIN-KDLVKNNVSFNAK 453
Query: 197 ALSL----------MGETQEEDRRFIVDLVIQK 219
+ + + IVD +I+
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain,
HTR-like protei protein structure initiative; HET: MSE
I3A; 1.73A {Haloarcula marismortui atcc 43049}
Length = 126
Score = 34.5 bits (80), Expect = 0.014
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 21/97 (21%)
Query: 180 IIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTI----- 234
++ DG I EVN + +G + E + + +
Sbjct: 31 DVLDADGT--ICEVNQRFCAELGYDESE---------VLGRSIWEFDLMFDAEDVQTQLS 79
Query: 235 -----EVRKVEKTYIPNDGKEHIIEVNDSALSLMGET 266
E RK E Y DG +EV+ +L GE
Sbjct: 80 GFSVDERRKFEGLYERRDGSTMSVEVHLLRFNLEGED 116
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG, TRA; 2.09A {Nostoc SP}
Length = 118
Score = 33.0 bits (76), Expect = 0.034
Identities = 11/93 (11%), Positives = 30/93 (32%), Gaps = 17/93 (18%)
Query: 180 IIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTIE---- 235
+G + + + VND+ + ++E+ + M + + E
Sbjct: 27 FCLGDNWQ--FLYVNDATCRMTEYSREQ---------LLSMNLQDIDVDFALHDWEEIRQ 75
Query: 236 --VRKVEKTYIPNDGKEHIIEVNDSALSLMGET 266
+ Y G+ ++E++ + L
Sbjct: 76 KNNYTFKTRYRSQSGRIFLVEMSLTFLEDQERR 108
Score = 26.4 bits (59), Expect = 6.0
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 251 HIIEVNDSALSLMGETQEE 269
+ VND+ + ++E+
Sbjct: 34 QFLYVNDATCRMTEYSREQ 52
>2r78_A Sensor protein; sensory box sensor histidine kinase/response
regulator, structural genomics, PSI, MCSG; 1.60A
{Geobacter sulfurreducens pca}
Length = 117
Score = 32.5 bits (75), Expect = 0.050
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 29/104 (27%)
Query: 181 IVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPP-DIESTI----- 234
I+ +G H ++VN + S +G T++E + VL D
Sbjct: 26 IMDAEG--HYLDVNPAICSAIGYTRDE---------FLALDWGVLSRGVDSGWAAASLAR 74
Query: 235 ----EVRKVEKTYIPNDGKEHIIEVNDSALSLMGETQEEDRRFI 274
E + E+T +G + +E++ L D + +
Sbjct: 75 IVGGEPLREERTVWTRNGDQLTVELSAHLL--------PDGKIL 110
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure
and stability, changes on oligomerisation,
water-bridges, DNA damage; 2.05A {Mycobacterium leprae}
PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A
1x3g_A 3a5u_A*
Length = 168
Score = 30.9 bits (70), Expect = 0.38
Identities = 12/60 (20%), Positives = 28/60 (46%)
Query: 265 ETQEEDRRFIVDLVIQKMQSSTMSSMSQPSAAQQRANFGRQSSQQSVTSTAGQIGEDSED 324
ET+E ++R +V++ + ++ S + ++ + A + G S + A G +D
Sbjct: 89 ETREGEKRTVVEVEVDEIGPSLRYATAKVNKASRSGGGGGGFGSGSRQAPAQMSGGVGDD 148
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase,
phosphoprotein, transfe two-component regulatory system;
3.80A {Thermotoga maritima}
Length = 349
Score = 29.9 bits (68), Expect = 1.0
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 13/84 (15%)
Query: 180 IIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTIEV--- 236
I + KDG+ I E N A L G +E V+ + + +I S E
Sbjct: 22 ITLSKDGR--ITEWNKKAEQLFGLKKEN--------VLGRRLKDLPDFEEIGSVAESVFE 71
Query: 237 RKVEKTYIPNDGKEHIIEVNDSAL 260
K E + S
Sbjct: 72 NKEPVFLNFYKFGERYFNIRFSPF 95
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A
{Novosphingobium aromaticivorans}
Length = 104
Score = 27.9 bits (63), Expect = 1.5
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 242 TYIPNDGKEHIIEVNDSALSLM 263
DG I+ + LSLM
Sbjct: 4 LVTTRDGTRTEIQA-EPGLSLM 24
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport,
iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Length = 109
Score = 27.2 bits (61), Expect = 3.2
Identities = 1/22 (4%), Positives = 8/22 (36%), Gaps = 1/22 (4%)
Query: 242 TYIPNDGKEHIIEVNDSALSLM 263
++ G+ + +++
Sbjct: 9 VFVDRSGQRIPVSG-RVGDNVL 29
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase,
phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A
{Methylococcus capsulatus}
Length = 227
Score = 28.2 bits (63), Expect = 3.2
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 180 IIVGKDGKEHIIEVNDSALSLMGETQEE 207
++ D + I+ ND+ ++ +EE
Sbjct: 1 LVSITDLQGRILYANDNFCAVSRYGREE 28
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR
{Pseudomonas SP} SCOP: d.15.4.1
Length = 105
Score = 27.1 bits (61), Expect = 3.2
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 242 TYIPNDGKEHIIEVNDSALSLM 263
+I E+ ++ SLM
Sbjct: 4 VFIDEQSGEYAVDA-QDGQSLM 24
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol
SIDE CHA cleavage, structural genomics; HET: HEM HC9;
2.17A {Homo sapiens} PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A
1e6e_B* 1cje_A
Length = 123
Score = 27.3 bits (61), Expect = 3.5
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 232 STIEVRKVEKTYIPNDGKEHIIEVNDSALSLM 263
S+ + V +I DG+ + SL+
Sbjct: 1 SSEDKITV--HFINRDGETLTTKG-KVGDSLL 29
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding,
iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus}
SCOP: d.15.4.1 PDB: 1e9m_A
Length = 106
Score = 26.8 bits (60), Expect = 3.9
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 242 TYIPNDGKEHIIEVNDSALSLM 263
+I ++G H +E L++M
Sbjct: 4 IFIEHNGTRHEVEA-KPGLTVM 24
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase
regulation, transferase; NMR {Homo sapiens} SCOP:
d.110.3.5
Length = 114
Score = 27.0 bits (60), Expect = 4.3
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 171 GGLDICALEIIVGKDGKE-HIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPD 229
G +D + I D K I+ ND A L+G + ++ + +++
Sbjct: 1 GAMDPEFNKAIFTVDAKTTEILVANDKACGLLGYSSQD---------LIGQKLTQFFLRS 51
Query: 230 IESTIEVRKVEKTYIPNDGKEHII 253
+E + + ++ DG ++
Sbjct: 52 DSDVVE--ALSEEHMEADGHAAVV 73
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular
electron TRA electron transport, metal-binding; HET:
RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A
3n9y_C* 2jqr_B* 3na0_C*
Length = 108
Score = 26.8 bits (60), Expect = 4.4
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 242 TYIPNDGKEHIIEVNDSALSLM 263
+I DG+ + SL+
Sbjct: 10 HFINRDGETLTTKG-KIGDSLL 30
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A
{Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A
1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C*
1put_A 1gpx_A
Length = 106
Score = 26.8 bits (60), Expect = 4.7
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 242 TYIPNDGKEHIIEVNDSALSLM 263
Y+ +DG ++V +SLM
Sbjct: 4 VYVSHDGTRRELDV-ADGVSLM 24
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H';
structural genomics, RRM domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: d.58.7.1
Length = 102
Score = 26.6 bits (59), Expect = 4.8
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 164 DEVAELFGGLDICALEIIVGKDGK 187
+++ F L+ + I +G DG+
Sbjct: 30 NDIYNFFSPLNPMRVHIEIGPDGR 53
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur,
metal-binding, electron transport; 2.01A
{Rhodopseudomonas palustris}
Length = 126
Score = 26.9 bits (60), Expect = 5.3
Identities = 4/22 (18%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 242 TYIPNDGKEHIIEVNDSALSLM 263
++ + G+ +EV + ++M
Sbjct: 25 NFVDHTGETRTVEVEEG-ATVM 45
>1auu_A SACY; antitermination, RNA binding domain, transcription
regulation; NMR {Bacillus subtilis} SCOP: b.35.2.1
Length = 55
Score = 25.3 bits (56), Expect = 5.5
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 233 TIEVRKVEKTYIPNDGKEH 251
++ K+EKT+I D ++
Sbjct: 37 IVDPSKIEKTFIRKDTPDY 55
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 27.6 bits (61), Expect = 6.4
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 172 GLDICA--LEIIVGKDGKEHIIEVN 194
GL CA EI + K+ + +IE
Sbjct: 304 GLQNCATHTEIKLMKNREPGLIESA 328
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 109
Score = 26.3 bits (58), Expect = 7.1
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 164 DEVAELFGGLDICALEIIVGKDGK 187
++V + F GL + A+ ++ G+
Sbjct: 31 NDVRDFFHGLRVDAVHLLKDHVGR 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,095,859
Number of extensions: 303566
Number of successful extensions: 903
Number of sequences better than 10.0: 1
Number of HSP's gapped: 897
Number of HSP's successfully gapped: 50
Length of query: 340
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 246
Effective length of database: 4,077,219
Effective search space: 1002995874
Effective search space used: 1002995874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.8 bits)