RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10366
(340 letters)
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 206
Score = 149 bits (376), Expect = 2e-44
Identities = 126/205 (61%), Positives = 161/205 (78%), Gaps = 5/205 (2%)
Query: 25 NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-----YPVVFKIGHA 79
N+L+ +YNF DKPWVFA ++ + + LG E FPLI+ TYYPN +EM +PVV KIGHA
Sbjct: 1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHA 60
Query: 80 HSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISG 139
HSG GKV+VE++ DFQD+A VVA+ TY T EP+ID+K+D+ VQKIG+NYKA+ R SISG
Sbjct: 61 HSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSISG 120
Query: 140 NWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALS 199
NWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA++ + GKDGK++I EV D ++
Sbjct: 121 NWKTNTGSAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMP 180
Query: 200 LMGETQEEDRRFIVDLVIQKMQVSV 224
L+GE Q EDR+ I DLVI KM +
Sbjct: 181 LIGEHQVEDRQLITDLVISKMNQLL 205
Score = 50.8 bits (120), Expect = 4e-08
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSS 285
DGK++I EV D ++ L+GE Q EDR+ I DLVI KM
Sbjct: 166 DGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQL 204
>d1i7na1 c.30.1.5 (A:113-214) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 102
Score = 32.0 bits (73), Expect = 0.021
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 7 QDHKNLLLGFNIGGIPSI 24
+D ++L++G G+PSI
Sbjct: 85 EDFRHLVIGMQYAGLPSI 102
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 32.8 bits (73), Expect = 0.034
Identities = 16/134 (11%), Positives = 45/134 (33%), Gaps = 9/134 (6%)
Query: 70 YPVVFKIGHAHSGFGKVRVESNQDFQ---------DMAGVVAVANTYCTTEPYIDSKFDV 120
PV+ K S G +V + Q D ++ + I + +
Sbjct: 43 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 102
Query: 121 HVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEI 180
+I + + ++ + +T + + + + + G +++
Sbjct: 103 PSIRIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 162
Query: 181 IVGKDGKEHIIEVN 194
++ DG+ +++E N
Sbjct: 163 MLDSDGQFYLLEAN 176
>d1yq2a1 b.1.4.1 (A:610-721) beta-Galactosidase, domains 2 and 4
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 112
Score = 27.7 bits (61), Expect = 0.91
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 71 PVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAV 103
P+ + G + V + + D + VV
Sbjct: 1 PIRLGLSLPAGGKPTLAVANLRHTADASDVVLR 33
>d1m07a_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog
(Rana catesbeiana) [TaxId: 8400]}
Length = 111
Score = 27.1 bits (60), Expect = 1.3
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 128 NYKAFQRKSISGNWKTNTGSAMLEQIPMTDH 158
N+ FQ+K I N + M I +
Sbjct: 2 NWATFQQKHIINTPIINCNTIMDNNIYIVGG 32
>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId:
9913]}
Length = 104
Score = 26.9 bits (59), Expect = 1.5
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 238 KVEKTYIPNDGKEHIIEVNDSALSLM 263
K+ +I DG+ + SL+
Sbjct: 2 KITVHFINRDGETLTTKG-KIGDSLL 26
>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp.,
terpredoxin [TaxId: 306]}
Length = 105
Score = 26.9 bits (59), Expect = 1.5
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 242 TYIPNDGKEHIIEVNDSALSLM 263
+I E+ ++ D SLM
Sbjct: 4 VFIDEQSGEYAVDAQDG-QSLM 24
>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida,
putidaredoxin [TaxId: 303]}
Length = 106
Score = 26.5 bits (58), Expect = 1.9
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 242 TYIPNDGKEHIIEVNDSALSLMGETQEEDRRFI 274
Y+ +DG ++V +SLM I
Sbjct: 4 VYVSHDGTRRELDV-ADGVSLMQAAVSNGIYDI 35
>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus,
ferredoxin VI [TaxId: 1061]}
Length = 106
Score = 26.5 bits (58), Expect = 2.3
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 242 TYIPNDGKEHIIEVNDSALSLM 263
+I ++G H +E L++M
Sbjct: 4 IFIEHNGTRHEVEA-KPGLTVM 24
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 346
Score = 27.3 bits (60), Expect = 2.5
Identities = 7/79 (8%), Positives = 24/79 (30%), Gaps = 5/79 (6%)
Query: 258 SALSLMGETQEEDRRFIVDLVIQKMQSSTMSSMSQPSAAQQRANFGRQSSQQSVTSTAGQ 317
S L ++ ++ I++ + T + + +++ S
Sbjct: 39 SGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAH 98
Query: 318 IGEDSEDTMKNLRKTFAGI 336
+ ++ T+ G+
Sbjct: 99 PYDSG-----HIAMTYTGL 112
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 26.6 bits (58), Expect = 4.5
Identities = 27/154 (17%), Positives = 45/154 (29%), Gaps = 37/154 (24%)
Query: 132 FQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGG----------------LDI 175
G ++ + + E + L+IDE+ + G L
Sbjct: 90 LAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR 149
Query: 176 CALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTIE 235
L +I E+ D AL RRF Q + P +E TI
Sbjct: 150 GELRLIGATTLDEYREIEKDPALE---------RRF---------QPVYVDEPTVEETIS 191
Query: 236 VRKVEKTYIPNDGKEHIIEVNDSALSLMGETQEE 269
+ + K H + ++DSA+
Sbjct: 192 ILRGLKEKY---EVHHGVRISDSAIIAAATLSHR 222
>d1auua_ b.35.2.1 (A:) SacY {Bacillus subtilis [TaxId: 1423]}
Length = 55
Score = 24.2 bits (53), Expect = 4.8
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 233 TIEVRKVEKTYIPNDGKEH 251
++ K+EKT+I D ++
Sbjct: 37 IVDPSKIEKTFIRKDTPDY 55
>d1g3ma_ c.37.1.5 (A:) Estrogen sulfotransferase (STE, sult1e1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 26.3 bits (57), Expect = 4.9
Identities = 14/101 (13%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 53 ENFPLIDITYYPNFKEMYPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEP 112
++ ++ + Y +++ V K+ H +E + + ++ +
Sbjct: 181 KSPRVLFLFYEDLKEDIRKEVIKLIH--------FLERKPSEELVDRIIHHTSFQEMKNN 232
Query: 113 YIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQI 153
+ + + + F RK I+G+WK + A+ E+
Sbjct: 233 PSTNYTTLPDEIMNQKLSPFMRKGITGDWKNHFTVALNEKF 273
>d1fmja_ c.37.1.5 (A:) Retinol dehydratase {Fall armyworm
(Spodoptera frugiperda) [TaxId: 7108]}
Length = 342
Score = 26.5 bits (57), Expect = 5.4
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 116 SKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQI 153
+ D I ++ + F RK +G W+ M +Q
Sbjct: 287 NMEDYREIGILADGEHFIRKGKAGCWRDYFDEEMTKQA 324
>d3bfxa1 c.37.1.5 (A:12-296) Sulfotransferase Sult1c2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 26.3 bits (57), Expect = 5.9
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 116 SKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQI 153
++ V + + +F RK G+WK + A E+
Sbjct: 229 NRSTVSKSILDQSISSFMRKGTVGDWKNHFTVAQNERF 266
>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 135
Score = 25.6 bits (56), Expect = 6.0
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 216 VIQKMQVSVLVPPDIESTIEVRKVEK---TYIPNDGKEHIIEVND 257
+++ V VP ++ ++ ++E+ IP KE ++ V+D
Sbjct: 7 QLREANEPVPVPLELPDEDQLVEIEEQLFINIPFVFKEFLLTVSD 51
>d1m58a_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog
(Rana catesbeiana), RNase2 [TaxId: 8400]}
Length = 106
Score = 24.8 bits (54), Expect = 7.4
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 128 NYKAFQRKSISGNWKTNTGSAM 149
N++ FQ+K ++ + M
Sbjct: 3 NWETFQKKHLTDTRDVKCDAEM 24
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 25.8 bits (55), Expect = 8.3
Identities = 15/145 (10%), Positives = 41/145 (28%), Gaps = 19/145 (13%)
Query: 69 MYPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIG-- 126
V K + S G RV + +++ + + E ++ ++ V IG
Sbjct: 40 GNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGND 99
Query: 127 ----------------SNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVA-EL 169
S + + + + P + A ++
Sbjct: 100 QPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKV 159
Query: 170 FGGLDICALEIIVGKDGKEHIIEVN 194
++ ++ ++ ++ E N
Sbjct: 160 LNLRGEARMDFLLDENNVPYLGEPN 184
>d1kvza_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog
(Rana catesbeiana), RNase4 [TaxId: 8400]}
Length = 107
Score = 24.8 bits (54), Expect = 8.3
Identities = 4/22 (18%), Positives = 12/22 (54%)
Query: 128 NYKAFQRKSISGNWKTNTGSAM 149
++ F++K ++ W + + M
Sbjct: 3 DWATFKKKHLTDTWDVDCDNLM 24
>d1ls6a_ c.37.1.5 (A:) Aryl sulfotransferase sult1a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 25.5 bits (55), Expect = 8.9
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 116 SKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQI 153
+ V + + + F RK ++G+WKT A E+
Sbjct: 232 NYTTVPQEFMDHSISPFMRKGMAGDWKTTFTVAQNERF 269
>d2gmqa1 b.122.1.11 (A:12-113) Uncharacterized protein PrgU
{Enterococcus faecalis [TaxId: 1351]}
Length = 102
Score = 24.6 bits (53), Expect = 9.3
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 131 AFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHI 190
A Q K ++ W+ NTG + ++ T ++W ++ +I L II K+GK
Sbjct: 6 AIQEKDLTLQWRGNTGKLVKVRLKNTRAMEMWYNKQITEENIQEITTLNII--KNGKSLA 63
Query: 191 IEV 193
+EV
Sbjct: 64 LEV 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,229,755
Number of extensions: 57112
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 34
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)