Query psy10370
Match_columns 280
No_of_seqs 152 out of 1173
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 16:10:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02724 Molybdenum cofactor s 100.0 1.5E-58 3.3E-63 469.5 25.6 251 3-276 543-803 (805)
2 COG3217 Uncharacterized Fe-S p 100.0 1.5E-55 3.3E-60 381.4 20.3 239 3-280 27-266 (270)
3 KOG2362|consensus 100.0 7.4E-56 1.6E-60 387.8 16.7 260 2-278 71-332 (336)
4 PF03473 MOSC: MOSC domain; I 100.0 2.4E-30 5.2E-35 208.8 8.5 122 136-275 10-133 (133)
5 PF03476 MOSC_N: MOSC N-termin 99.9 8E-22 1.7E-26 156.5 8.8 91 3-100 27-119 (120)
6 KOG2142|consensus 98.9 2.1E-10 4.4E-15 110.8 -0.3 180 3-226 488-671 (728)
7 PRK14499 molybdenum cofactor b 98.8 3.4E-08 7.3E-13 90.0 9.2 104 145-277 203-307 (308)
8 PRK11536 6-N-hydroxylaminopuri 98.5 7E-07 1.5E-11 77.8 10.3 110 144-279 54-166 (223)
9 COG2258 Uncharacterized protei 98.4 7.9E-07 1.7E-11 76.3 7.9 105 146-279 56-163 (210)
10 KOG3347|consensus 44.4 12 0.00025 31.1 1.1 27 172-198 3-39 (176)
11 KOG2362|consensus 37.8 29 0.00062 31.9 2.7 93 10-108 87-181 (336)
12 KOG2963|consensus 30.8 22 0.00048 33.1 0.8 23 204-226 170-192 (405)
13 CHL00112 rpl28 ribosomal prote 30.5 45 0.00098 23.1 2.2 11 170-180 24-34 (63)
14 KOG0462|consensus 30.0 69 0.0015 32.0 4.0 50 216-279 233-283 (650)
15 cd03703 aeIF5B_II aeIF5B_II: T 25.6 76 0.0016 24.6 2.9 24 254-277 13-37 (110)
16 PRK00359 rpmB 50S ribosomal pr 22.2 76 0.0016 22.8 2.2 11 170-180 24-34 (76)
17 COG4416 Com Mu-like prophage p 21.7 57 0.0012 21.9 1.3 14 204-217 22-35 (60)
18 PF06107 DUF951: Bacterial pro 21.5 1.3E+02 0.0028 20.5 3.0 30 185-215 14-43 (57)
19 cd03701 IF2_IF5B_II IF2_IF5B_I 21.2 1E+02 0.0022 23.0 2.8 21 255-275 14-35 (95)
20 COG4110 Uncharacterized protei 21.0 1.5E+02 0.0033 24.7 3.8 54 4-66 92-153 (200)
No 1
>PLN02724 Molybdenum cofactor sulfurase
Probab=100.00 E-value=1.5e-58 Score=469.47 Aligned_cols=251 Identities=24% Similarity=0.394 Sum_probs=210.2
Q ss_pred cccccccceEEEEEcCCCceEeeccccceeEEEEEEe-CCCcEEEEEEecCCce-eEEEeccccccc-ceeEeeeeeecc
Q psy10370 3 QDGCLEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYM-GGGAFQFSVYNQPSYE-KLTIQVADILQT-SHTKSFTLYVDE 79 (280)
Q Consensus 3 ~~Gl~~DR~~~lvd~~~g~~lt~r~~p~L~~i~~~i~-~~~~l~~~~l~~p~~~-~l~v~l~~~~~~-~~~~~~~~v~~~ 79 (280)
..||.|||+|||+| ++|+|+|||++|+|++|+|+++ .++.|+ |++|+++ +|.|++++.... ....+ +||++
T Consensus 543 ~~Gl~~DR~~~lvd-~~g~~~t~r~~p~l~~i~~~~~~~~~~l~---l~~~~~~~~l~v~l~~~~~~~~~~~v--~v~~~ 616 (805)
T PLN02724 543 ETGLLYDREWMIQS-LTGEILTQKKVPEMCLITTFIDLESGKLV---VRAPRCDHKLEIPLESDSQHEESGEV--ILCGN 616 (805)
T ss_pred cccccccceEEEEc-CCCcEEEcccCceEEEEEeEEecCCCeEE---EEcCCCCccEEEeCCCccccccccee--EEeCC
Confidence 57999999999999 8999999999999999999995 467899 9999987 799999875432 44567 99999
Q ss_pred eeeeeeccchhhHHHHHhcCCCCeeEEecCCCCccccccCccccccccccccCCCCCCeeeccCcCeeeeecHhHHHHHH
Q psy10370 80 VLEAFDCGDLASDWFAKYLLNQSDRSIRLGLSTNRRRSIGDNYLRKYTTVYDNVNDEDIGVYADMTSYMVLNENSLRDLN 159 (280)
Q Consensus 80 ~~~~~d~g~~~~~wlS~~Lg~~~~rLv~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~D~~p~~lis~~Sl~~l~ 159 (280)
.+.++|||+++++|||++||+ +||||+.+...++..... ... ..+. .......+|+|.+||||+|++||++||
T Consensus 617 ~~~~~~~g~~~~~w~S~~lg~-~~~Lv~~~~~~~r~~~~~--~~~---~~~~-~~~~~~~~faD~~p~llis~aSl~~Ln 689 (805)
T PLN02724 617 RAESMSYGTEINEWFTNALGR-RCTLVRKSSSNTRVCRNR--NPS---HSPC-GDDESRLSFANEGQFLLISEASVEDLN 689 (805)
T ss_pred cceeEecchhHHHHHHHHhCC-ceEEEEeCCccccccccc--ccc---cccc-cCcCCceeecCCCceEEecHHHHHHHH
Confidence 999999999999999999994 899997654333221110 000 0000 012345899999999999999999999
Q ss_pred Hhhccc---CCCCccccceeeeEEEeCCCCccCCCccEEEeCCCeEEEEEeecccceeeeeeCCCCCCCCCCChHHHHHh
Q psy10370 160 KKMSDI---GVEDVSMLQFRGNIVVDGPPSYAEDTWDWVRFNSDVITRQVKPCTRCILTTVHPDTGRKQPDSQPLKMLQM 236 (280)
Q Consensus 160 ~~l~~~---~~~~~~~~RFRpNIvv~g~~pf~ED~W~~l~IG~~~~~~vv~pc~RC~~~~vDp~tG~~~~~~epl~tL~~ 236 (280)
++++.. +..+++++||||||||+|++||+||.|++|+|| ++.|++++||+||+||||||+||+++++.|||+||++
T Consensus 690 ~~l~~~~~~~~~~v~~~RFRpNiVv~g~~~f~ED~W~~l~IG-~~~~~~~~~C~RC~~~tvDp~tg~~~~~~epl~tL~~ 768 (805)
T PLN02724 690 RRLATGQEDAKIRLDPTRFRPNLVVSGGEAYAEDEWQSLSIG-DAEFTVLGGCNRCQMINIDQETGLVNPSNEPLATLAS 768 (805)
T ss_pred HHhccccccccCCCcHHHccceEEECCCCCccccCceEEEEC-CEEEEEecccCCCCCCcCCcccCccCCCCChHHHHHH
Confidence 999742 123799999999999999999999999999999 9999999999999999999999998666799999999
Q ss_pred hhCCCchhhcccCCCCceeeeeEEe----ecCCEEeeCCeEEEe
Q psy10370 237 YRAVPDLERRKVENFAPMFGVYMGV----HRTGYVNVGDDVYVG 276 (280)
Q Consensus 237 ~R~~~~~~~~~~~~~~~~fG~~~~~----~~~G~I~VGD~V~v~ 276 (280)
||+. +++++||+|+++ ...|.|+|||.|++.
T Consensus 769 ~R~~---------~~~~~FG~~~~~~~~~~~~~~i~vGd~v~~~ 803 (805)
T PLN02724 769 YRRV---------KGKILFGILLRYEISDKRDQWIAVGSRVNPR 803 (805)
T ss_pred HhCc---------CCCCCccceeeccccCCCCcEEEeCCEEEec
Confidence 9972 467899999977 466899999999875
No 2
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=1.5e-55 Score=381.45 Aligned_cols=239 Identities=30% Similarity=0.513 Sum_probs=211.3
Q ss_pred cccccccceEEEEEcCCCceEeeccccceeEEEEEEeCCCcEEEEEEecCCceeEEEecccccccceeEeeeeeecceee
Q psy10370 3 QDGCLEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYMGGGAFQFSVYNQPSYEKLTIQVADILQTSHTKSFTLYVDEVLE 82 (280)
Q Consensus 3 ~~Gl~~DR~~~lvd~~~g~~lt~r~~p~L~~i~~~i~~~~~l~~~~l~~p~~~~l~v~l~~~~~~~~~~~~~~v~~~~~~ 82 (280)
..||.+||+|||+| .+|.|+|+|++|+|..++|.. ..+.+. +++++++.+.+...+ .+...+ .||++.+.
T Consensus 27 ~~Gl~~DR~fml~d-~dG~~itar~~pa~~~~~~~~-~~~~~~---l~~~~~~~~~v~~~~---~~~~~~--~vw~~~~~ 96 (270)
T COG3217 27 ASGLAGDRRFMLVD-PDGRFITARRRPAMVRFTPAY-EHDGLR---LTAPDGEELYVRFAD---AQRAPV--EVWGDHFT 96 (270)
T ss_pred ccCCccceEEEEEc-CCCceeccccccceeEeeeec-cccceE---EecCCCccceeeccc---cccccc--eeeccccc
Confidence 36899999999999 779999999999999999976 567799 999999999988765 233455 99999999
Q ss_pred eeeccchhhHHHHHhcCCCCeeEEecCC-CCccccccCccccccccccccCCCCCCeeeccCcCeeeeecHhHHHHHHHh
Q psy10370 83 AFDCGDLASDWFAKYLLNQSDRSIRLGL-STNRRRSIGDNYLRKYTTVYDNVNDEDIGVYADMTSYMVLNENSLRDLNKK 161 (280)
Q Consensus 83 ~~d~g~~~~~wlS~~Lg~~~~rLv~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~D~~p~~lis~~Sl~~l~~~ 161 (280)
+...++++++|||.||| ..+.|+..+. ..+++.. .+.....|+|++|+|+++++||++|+++
T Consensus 97 a~~~~~a~~d~lS~flg-~~v~L~~~~~~~~r~v~~----------------~p~~~~~fadg~p~l~~~~aSl~dL~~r 159 (270)
T COG3217 97 ADAAGDAANDWLSGFLG-RAVSLRWDGAGFARRVKA----------------GPAVPVTFADGYPILLFNTASLADLRRR 159 (270)
T ss_pred cccchhHHHHHHHhhhc-eeeEEEecCccccccccC----------------CCceeeEecCCceEEEEccccHHHHhhh
Confidence 99999999999999999 5899996653 2233221 2345689999999999999999999999
Q ss_pred hcccCCCCccccceeeeEEEeCCCCccCCCccEEEeCCCeEEEEEeecccceeeeeeCCCCCCCCCCChHHHHHhhhCCC
Q psy10370 162 MSDIGVEDVSMLQFRGNIVVDGPPSYAEDTWDWVRFNSDVITRQVKPCTRCILTTVHPDTGRKQPDSQPLKMLQMYRAVP 241 (280)
Q Consensus 162 l~~~~~~~~~~~RFRpNIvv~g~~pf~ED~W~~l~IG~~~~~~vv~pc~RC~~~~vDp~tG~~~~~~epl~tL~~~R~~~ 241 (280)
.+. .++|+|||||||++|.++|+||.|+.|+|| ++.|.+++||.||+|||+||+||++.+..+|+++|+++|...
T Consensus 160 ~~~----~~~merFRpNlvv~ge~a~aEd~w~~i~IG-~v~F~~vkPC~RCi~Ttvd~~tGe~~p~~~p~~~~~~~R~~~ 234 (270)
T COG3217 160 VPA----NLEMERFRPNLVVEGEDAFAEDSWKSIRIG-GVRFDVVKPCSRCIFTTVDPDTGERRPGGEPLFTLNRFRTNP 234 (270)
T ss_pred ccC----CCChhhCCCceEEeecccccccCceEEEEc-cEEEEEeccchhcceeeECCcccccCCCCChhHHHHhhhccc
Confidence 998 999999999999999999999999999999 999999999999999999999999988999999999999732
Q ss_pred chhhcccCCCCceeeeeEEeecCCEEeeCCeEEEeeeCC
Q psy10370 242 DLERRKVENFAPMFGVYMGVHRTGYVNVGDDVYVGCDDE 280 (280)
Q Consensus 242 ~~~~~~~~~~~~~fG~~~~~~~~G~I~VGD~V~v~~~~~ 280 (280)
+ .+.+.||+|+++..+|.|++||.|+++.+++
T Consensus 235 d-------~~~~~FG~n~~a~~~g~ir~Gd~ve~l~~~~ 266 (270)
T COG3217 235 D-------AGGVLFGQNLIARNEGRIRVGDAVEVLAVGP 266 (270)
T ss_pred c-------cCcccccceEEeccCcceecCcceeEEEecc
Confidence 1 2347999999999999999999999998764
No 3
>KOG2362|consensus
Probab=100.00 E-value=7.4e-56 Score=387.77 Aligned_cols=260 Identities=36% Similarity=0.583 Sum_probs=212.9
Q ss_pred CcccccccceEEEEEcCCCceEeeccccceeEEEEEEeCCCcEEEEEEecCCceeEEEecccccccceeEeeeeeeccee
Q psy10370 2 VQDGCLEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYMGGGAFQFSVYNQPSYEKLTIQVADILQTSHTKSFTLYVDEVL 81 (280)
Q Consensus 2 ~~~Gl~~DR~~~lvd~~~g~~lt~r~~p~L~~i~~~i~~~~~l~~~~l~~p~~~~l~v~l~~~~~~~~~~~~~~v~~~~~ 81 (280)
++.|..+||.||+++ ++|+++|||..|+|++|+... .++.+. +..|+.+..++++-....++...+....|+...
T Consensus 71 ~~~e~~~DR~~lvVn-~kg~~iTaRv~P~l~~ies~~-~~~~~~---v~~~~~~~~s~~~~~~l~~~~~~~~t~~~~~~~ 145 (336)
T KOG2362|consen 71 PSMEFLWDRTFLVVN-EKGKFITARVKPKLVLIESEM-PDGAFL---VDWPGPEKDSVLVFRVLGNKRLKVATLFPDLSA 145 (336)
T ss_pred cchhheeeceEEEEe-ccceEEEeeccceEEEeeccc-ccceeE---EecCCCcchhhhhhhhccCCcccccccccccee
Confidence 456789999999999 799999999999999999988 677777 777776666655544444333333337788999
Q ss_pred eeeeccchhhHHHHHhcCCCCeeEEecCC--CCccccccCccccccccccccCCCCCCeeeccCcCeeeeecHhHHHHHH
Q psy10370 82 EAFDCGDLASDWFAKYLLNQSDRSIRLGL--STNRRRSIGDNYLRKYTTVYDNVNDEDIGVYADMTSYMVLNENSLRDLN 159 (280)
Q Consensus 82 ~~~d~g~~~~~wlS~~Lg~~~~rLv~~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~D~~p~~lis~~Sl~~l~ 159 (280)
.+++||+.++.|||+++-.++.++.-.+. ...+.+.....| +..+.+ .+.+..+|+|.+||||+|++||++||
T Consensus 146 dg~~cgd~~~~~~s~~~e~~~~~~~~~~~~~~~er~~~~~~~~--~~~p~~---~~~d~~~f~D~~Pfli~s~aSL~dLN 220 (336)
T KOG2362|consen 146 DGYDCGDWVASAFSEGIEEPNWRLIFVGKGLYTERTNKPDETW--WNNPVP---KRGDSTTFSDLAPFLIASQASLDDLN 220 (336)
T ss_pred eccccHhhhhhhHHhhhhccchhhhhhcCcceeeecccCCccc--cCCCcc---CccccccccccchhhhhchhhHHHHH
Confidence 99999999999999988754544442111 111111111111 112222 56678999999999999999999999
Q ss_pred HhhcccCCCCccccceeeeEEEeCCCCccCCCccEEEeCCCeEEEEEeecccceeeeeeCCCCCCCCCCChHHHHHhhhC
Q psy10370 160 KKMSDIGVEDVSMLQFRGNIVVDGPPSYAEDTWDWVRFNSDVITRQVKPCTRCILTTVHPDTGRKQPDSQPLKMLQMYRA 239 (280)
Q Consensus 160 ~~l~~~~~~~~~~~RFRpNIvv~g~~pf~ED~W~~l~IG~~~~~~vv~pc~RC~~~~vDp~tG~~~~~~epl~tL~~~R~ 239 (280)
++|++ +++++||||||+|+||.||+||.|.+|+|| +++|+.++||+||++|||||+||+++. .|||+||++||.
T Consensus 221 t~L~~----~V~~~~FRpnI~vdgc~~~~ED~W~ei~Ig-d~~~~~v~~CtRCiltTV~petG~~~k-~qpletLr~fR~ 294 (336)
T KOG2362|consen 221 TRLDK----PVPMNNFRPNIVVDGCDAFAEDKWDEIRIG-DAEFQCVAPCTRCILTTVDPETGEMSK-MQPLETLREFRL 294 (336)
T ss_pred hhhcC----CccHhhcccceEEecCccccccccceEEEc-cEEEEEEeeccceeeeeeccccccccc-cCchhhHHhhhc
Confidence 99999 999999999999999999999999999999 999999999999999999999999995 899999999999
Q ss_pred CCchhhcccCCCCceeeeeEEeecCCEEeeCCeEEEeee
Q psy10370 240 VPDLERRKVENFAPMFGVYMGVHRTGYVNVGDDVYVGCD 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~fG~~~~~~~~G~I~VGD~V~v~~~ 278 (280)
.+ +..++++++++.||+|+...+.|.|+|||.|+|+..
T Consensus 295 ~~-~~~~~~~~~sp~fGv~~~~~~~g~I~vGd~Vyv~~k 332 (336)
T KOG2362|consen 295 DP-GKPRKVHMGSPLFGVYAGLVNEGTIKVGDTVYVLYK 332 (336)
T ss_pred CC-cccccccCCCcccceeecccccceEEeCCEEEEEec
Confidence 88 545788999999999999999999999999999864
No 4
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=99.96 E-value=2.4e-30 Score=208.81 Aligned_cols=122 Identities=33% Similarity=0.631 Sum_probs=91.2
Q ss_pred CCeeeccCcCeeeeecHhHHHHHHHhhcccCCCCccccceeeeEEEeCCCCccCCCc--cEEEeCCCeEEEEEeecccce
Q psy10370 136 EDIGVYADMTSYMVLNENSLRDLNKKMSDIGVEDVSMLQFRGNIVVDGPPSYAEDTW--DWVRFNSDVITRQVKPCTRCI 213 (280)
Q Consensus 136 ~~~~~f~D~~p~~lis~~Sl~~l~~~l~~~~~~~~~~~RFRpNIvv~g~~pf~ED~W--~~l~IG~~~~~~vv~pc~RC~ 213 (280)
.....|+|.+|++|+|++|+++|+++++.. ..+++||||||+|+|.+||+||.| ++|+|| ++.|+++++|.||.
T Consensus 10 ~~~~~~~d~~~v~l~s~~s~~~l~~~~~~~---~~~~~rFR~Nivv~g~~~f~Ed~w~~~~l~iG-~~~l~v~~~~~rC~ 85 (133)
T PF03473_consen 10 PYKHHFGDERPVSLISQESLDALNARLGEP---GLDPRRFRPNIVVDGLPPFDEDDWCGDRLRIG-DAVLEVTQPCPRCV 85 (133)
T ss_dssp ------GCGGSEEEEECHHHHHHHHHCCCC---GGSCCCCT-SEEECS-T---TCCGBTEEEECT-TEEEEEEEE----C
T ss_pred CCcccCCCCCceeeccHHHHHHHHhhhccc---cCCHhHCCCCEEEeccccccccccceeeeccC-CEEEEEEeCcCCCC
Confidence 346889999999999999999999999972 349999999999999999999999 999999 99999999999999
Q ss_pred eeeeeCCCCCCCCCCChHHHHHhhhCCCchhhcccCCCCceeeeeEEeecCCEEeeCCeEEE
Q psy10370 214 LTTVHPDTGRKQPDSQPLKMLQMYRAVPDLERRKVENFAPMFGVYMGVHRTGYVNVGDDVYV 275 (280)
Q Consensus 214 ~~~vDp~tG~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~G~I~VGD~V~v 275 (280)
++++||+||.+++ +....+..+-. ...+|+|+.+..+|.|+|||+|+|
T Consensus 86 ~~~~~~~tg~~~~--~~~~~~~~~~~------------~~~~G~~~~V~~~G~I~vGD~V~V 133 (133)
T PF03473_consen 86 MPNVDPDTGERDP--EGKPLFGQNAS------------PGRRGVYARVIKGGTIRVGDEVEV 133 (133)
T ss_dssp HHHHHHCHCTCTS--TTHHHHHHHHC------------CTSS-EEEEEEE-EEEETTSEEEE
T ss_pred ccceeeccCcccc--hhhhhhhhhee------------cCCceEEEEeccCCEEccCCeEEC
Confidence 9999999999986 32222322211 237999999999999999999987
No 5
>PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO). The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A.
Probab=99.86 E-value=8e-22 Score=156.45 Aligned_cols=91 Identities=30% Similarity=0.579 Sum_probs=64.2
Q ss_pred ccccc-ccceEEEEEcCCCceEeeccccceeEEEEEEe-CCCcEEEEEEecCCceeEEEecccccccceeEeeeeeecce
Q psy10370 3 QDGCL-EDRSFVLFNEKEKNFISSKKFNHLLLIQTEYM-GGGAFQFSVYNQPSYEKLTIQVADILQTSHTKSFTLYVDEV 80 (280)
Q Consensus 3 ~~Gl~-~DR~~~lvd~~~g~~lt~r~~p~L~~i~~~i~-~~~~l~~~~l~~p~~~~l~v~l~~~~~~~~~~~~~~v~~~~ 80 (280)
..|+. |||+|||+| ++|+|+|||++|+|++|++.++ +++.|+ +++|+++.+.++++ ........+ .+|++.
T Consensus 27 ~~Gl~~~DR~~~l~d-~~g~~it~r~~P~l~~i~~~~~~~~~~l~---l~~~~~~~l~i~~~-~~~~~~~~v--~v~~~~ 99 (120)
T PF03476_consen 27 PSGLKAGDRRFMLVD-EDGRFITQRQYPRLALIRPEIDEDDGTLT---LSAPGMPPLEIPLP-DSTGPRTEV--QVWGDT 99 (120)
T ss_dssp -----GT--SEEEEE-TTS-EE-TTT-GGGG--EEEE---SSEEE---EE-SSS-EEEEESS-SS-S-EEEE--EETTEE
T ss_pred cccCCccchhheeEC-CCCCEEeeccCcceeeEEEEeecceeEEE---EECCCCceEEEEcc-cccCCEeeE--EEECCE
Confidence 47996 999999999 9999999999999999999996 467899 99999999999988 223356777 999999
Q ss_pred eeeeeccchhhHHHHHhcCC
Q psy10370 81 LEAFDCGDLASDWFAKYLLN 100 (280)
Q Consensus 81 ~~~~d~g~~~~~wlS~~Lg~ 100 (280)
+.+++||+++++|||++||+
T Consensus 100 ~~~~~~gd~~~~WfS~~Lg~ 119 (120)
T PF03476_consen 100 VEAYDCGDEASEWFSEFLGR 119 (120)
T ss_dssp EEEEE--HHHHHHHHHHT--
T ss_pred eEEEECCHHHHHHHHHHHCc
Confidence 99999999999999999994
No 6
>KOG2142|consensus
Probab=98.90 E-value=2.1e-10 Score=110.80 Aligned_cols=180 Identities=15% Similarity=0.125 Sum_probs=110.5
Q ss_pred cccccccceEEEEEcCCCceEeeccccceeEEEEEEeCCCcEEEEEEecCCceeEEEecccccc-c--ceeEeeeeeecc
Q psy10370 3 QDGCLEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYMGGGAFQFSVYNQPSYEKLTIQVADILQ-T--SHTKSFTLYVDE 79 (280)
Q Consensus 3 ~~Gl~~DR~~~lvd~~~g~~lt~r~~p~L~~i~~~i~~~~~l~~~~l~~p~~~~l~v~l~~~~~-~--~~~~~~~~v~~~ 79 (280)
..|+.|||.||++| -+|..|++++++++.||+|.+.. . . ..+++ .+|+++.... + ..+.+ ..| .
T Consensus 488 ~~gl~~~~s~m~~~-~~~~alr~etE~e~~Li~~~~~~----~---~-d~~~~-~~vs~~~sl~~~~a~~~s~--~d~-~ 554 (728)
T KOG2142|consen 488 SQGLKYDRSWMSVD-MNGSALRQETESELCLIGPRIKV----Q---E-DEQSE-RRVSFPTSLEQGEASKCSS--YDC-P 554 (728)
T ss_pred cccccccccccccc-ccccceeeecccceeeeccccch----h---h-hcccc-eeecchhhhhhhhhhhccc--ccC-c
Confidence 57999999999999 99999999999999999999932 1 1 11133 4444432211 1 11222 333 4
Q ss_pred eeeeeeccchhhHHHHHhcCCCCeeEEecCCCCcccccc-CccccccccccccCCCCCCeeeccCcCeeeeecHhHHHHH
Q psy10370 80 VLEAFDCGDLASDWFAKYLLNQSDRSIRLGLSTNRRRSI-GDNYLRKYTTVYDNVNDEDIGVYADMTSYMVLNENSLRDL 158 (280)
Q Consensus 80 ~~~~~d~g~~~~~wlS~~Lg~~~~rLv~~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~D~~p~~lis~~Sl~~l 158 (280)
++.++|+++....|+++-.|+.-++++.... +..... ...-.-.+...| .....+..+..+.. +|.
T Consensus 555 ~c~~iDh~~~lgln~t~~r~r~ll~wl~~sl--~~~~~~~~~~~~~nlvq~y-----gpk~~~erG~~~~f----nl~-- 621 (728)
T KOG2142|consen 555 PCRGIDHVDSLGLNLTTNRGRELLNWLVQSL--RNLQHSESSSTTVNLVQIY-----GPKTKYERGPAVAF----NLF-- 621 (728)
T ss_pred cccccchhhhhhHHhhhhhhhhHHHHHHHhc--ccccccccccccccceeee-----cCccccccChhhee----ehh--
Confidence 5889999999999999988853333321110 000000 000000000000 00111111111110 111
Q ss_pred HHhhcccCCCCccccceeeeEEEeCCCCccCCCccEEEeCCCeEEEEEeecccceeeeeeCCCCCCCC
Q psy10370 159 NKKMSDIGVEDVSMLQFRGNIVVDGPPSYAEDTWDWVRFNSDVITRQVKPCTRCILTTVHPDTGRKQP 226 (280)
Q Consensus 159 ~~~l~~~~~~~~~~~RFRpNIvv~g~~pf~ED~W~~l~IG~~~~~~vv~pc~RC~~~~vDp~tG~~~~ 226 (280)
--..|||.||||++...|+|-.|..+-|| .+.|.+ ||.| ++||.+|++..
T Consensus 622 -----------d~~~~fr~p~IV~~lae~E~isl~~~~l~-~iri~d--p~~r----~~dq~~~~r~~ 671 (728)
T KOG2142|consen 622 -----------DLSKRFRAPIIVNKLAEREEISLGELSLG-HIRIQD--PCHR----DIDQLLGQRRG 671 (728)
T ss_pred -----------hhhccccchhhhcchhhhhcccccceeee-eeEEec--Ccch----hhhHHhhhhcc
Confidence 12569999999999999999999999999 888888 8999 78999998864
No 7
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=98.76 E-value=3.4e-08 Score=90.01 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=76.2
Q ss_pred CeeeeecHhHHHHHHHhhcccCCCCccccceeeeEEEeCCCCccCCCccEEEeCCC-eEEEEEeecccceeeeeeCCCCC
Q psy10370 145 TSYMVLNENSLRDLNKKMSDIGVEDVSMLQFRGNIVVDGPPSYAEDTWDWVRFNSD-VITRQVKPCTRCILTTVHPDTGR 223 (280)
Q Consensus 145 ~p~~lis~~Sl~~l~~~l~~~~~~~~~~~RFRpNIvv~g~~pf~ED~W~~l~IG~~-~~~~vv~pc~RC~~~~vDp~tG~ 223 (280)
.++++++.++++.+++ ++. +.+..-.||.||+++|.....=.-=++|+|| + ++|++..||.+|.-.......+
T Consensus 203 RqVsl~~~E~~~~~~~-~g~---~~l~pG~fGENLtv~Gidl~~l~iGdrlrIG-~~avLeVt~pr~PC~~~~~~l~~~- 276 (308)
T PRK14499 203 RQVSLLDISSIKKMEE-YGL---KGLCFGKFAENITTENLDLQKISLGTKLKIG-DNVVLEISQIGKKCHGSGCEIARQ- 276 (308)
T ss_pred ceEEEcCHHHHHHHHh-cCC---cCCCcccccceEEEcCcCHHHCCCCCEEEEC-CcEEEEEEeCCCCCcCcccchhHh-
Confidence 6899999999999873 333 2488999999999999833221122899999 7 9999999999997421111110
Q ss_pred CCCCCChHHHHHhhhCCCchhhcccCCCCceeeeeEEeecCCEEeeCCeEEEee
Q psy10370 224 KQPDSQPLKMLQMYRAVPDLERRKVENFAPMFGVYMGVHRTGYVNVGDDVYVGC 277 (280)
Q Consensus 224 ~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~G~I~VGD~V~v~~ 277 (280)
.+. ..-+.=|+|+.|.++|.|++||.|.+++
T Consensus 277 -------------~~~----------~~~~r~G~y~RVl~~G~Ir~GD~V~l~~ 307 (308)
T PRK14499 277 -------------VGV----------CIMPKEGLFAKVLKGGKIKPGDIIEILN 307 (308)
T ss_pred -------------cCc----------cCcccceEEEEEecCeEEcCCCEEEEcc
Confidence 110 0012369999999999999999999875
No 8
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=98.53 E-value=7e-07 Score=77.84 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=83.7
Q ss_pred cCeeeeecHhHHHHHHHhhcccCCCCccccceeeeEEEeCCCCccCCCc---cEEEeCCCeEEEEEeecccceeeeeeCC
Q psy10370 144 MTSYMVLNENSLRDLNKKMSDIGVEDVSMLQFRGNIVVDGPPSYAEDTW---DWVRFNSDVITRQVKPCTRCILTTVHPD 220 (280)
Q Consensus 144 ~~p~~lis~~Sl~~l~~~l~~~~~~~~~~~RFRpNIvv~g~~pf~ED~W---~~l~IG~~~~~~vv~pc~RC~~~~vDp~ 220 (280)
.-.+++.+.++++.+++.++..+ ..+..--|--||.++|. .|++- ..++|| +|+|+|..|+..|--. +..
T Consensus 54 dkAV~~y~~e~y~~w~~~~~~~~-~~l~~G~fGENLtv~Gl---~e~~v~IGD~~riG-~avleVsqpR~PC~kl--~~r 126 (223)
T PRK11536 54 DRALCHYPREHYLYWAREFPEQA-ELFVAPAFGENLSTDGL---TESNVFIGDIFRWG-EALIQVTQPRSPCYKL--NYH 126 (223)
T ss_pred cceEEEcCHhHHHHHHHHccccc-cccCCCCccCCEEecCc---ChhhCCccCEEEEC-CEEEEEecCCCCCCch--hhh
Confidence 36799999999999998886421 14566689999999986 66666 899999 9999999999999544 333
Q ss_pred CCCCCCCCChHHHHHhhhCCCchhhcccCCCCceeeeeEEeecCCEEeeCCeEEEeeeC
Q psy10370 221 TGRKQPDSQPLKMLQMYRAVPDLERRKVENFAPMFGVYMGVHRTGYVNVGDDVYVGCDD 279 (280)
Q Consensus 221 tG~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~G~I~VGD~V~v~~~~ 279 (280)
.|.. +..+.+.+. ..-|+|+.|.++|.|++||+|.++++.
T Consensus 127 ~~~~----~~~~~~~~~---------------g~~G~Y~RVL~~G~V~~GD~v~l~~r~ 166 (223)
T PRK11536 127 FDIS----DIAQLMQNS---------------GKCGWLYRVIAPGKVSADAPLELVSRV 166 (223)
T ss_pred ccch----hHHHHHHhh---------------CCcEEEEEEECCcEEcCCCEEEEEeCC
Confidence 3322 333333322 135999999999999999999999874
No 9
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.43 E-value=7.9e-07 Score=76.26 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=83.7
Q ss_pred eeeeecHhHHHHHHHhhcccCCCCccccceeeeEEEeCCCCccCCCc---cEEEeCCCeEEEEEeecccceeeeeeCCCC
Q psy10370 146 SYMVLNENSLRDLNKKMSDIGVEDVSMLQFRGNIVVDGPPSYAEDTW---DWVRFNSDVITRQVKPCTRCILTTVHPDTG 222 (280)
Q Consensus 146 p~~lis~~Sl~~l~~~l~~~~~~~~~~~RFRpNIvv~g~~pf~ED~W---~~l~IG~~~~~~vv~pc~RC~~~~vDp~tG 222 (280)
.+.+.+.+.++.+...++. .+..-=|+-||.++|. .|.+- .+++|| ++.|+|..|+..|.-.+.-. +
T Consensus 56 Av~~y~~ehy~~w~~~lg~----~l~pg~fGENltt~Gl---~e~~l~iGdr~riG-~allEVSqpR~PC~~l~~~~--~ 125 (210)
T COG2258 56 AVCHYPREHYAAWETLLGR----GLQPGAFGENLTTSGL---DEANLCIGDRFRIG-EALLEVTQPRKPCSKLNKRF--G 125 (210)
T ss_pred eEEEccHHHHHHHHHHhCC----CCCcccccCceeecCc---chhhccccCEEEec-cEEEEecCCCCchHHHHHhc--C
Confidence 6888999999999999998 6778899999999998 56655 899999 99999999999998775433 1
Q ss_pred CCCCCCChHHHHHhhhCCCchhhcccCCCCceeeeeEEeecCCEEeeCCeEEEeeeC
Q psy10370 223 RKQPDSQPLKMLQMYRAVPDLERRKVENFAPMFGVYMGVHRTGYVNVGDDVYVGCDD 279 (280)
Q Consensus 223 ~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~G~I~VGD~V~v~~~~ 279 (280)
.. +..+.+ +. ...-|+|+.|..+|.|++||++.+..+.
T Consensus 126 ~~----~~~~~~---~~------------~G~~G~y~RVL~~G~v~~gD~l~l~~r~ 163 (210)
T COG2258 126 IP----DLAKRF---QQ------------TGRTGWYARVLEEGKVRAGDPLKLIPRP 163 (210)
T ss_pred Cc----cHHHHh---hc------------cCcccEEEEEcccceecCCCceEEecCC
Confidence 11 222222 21 1257999999999999999999998764
No 10
>KOG3347|consensus
Probab=44.42 E-value=12 Score=31.08 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=18.7
Q ss_pred ccceeeeEEEeCCC-----CccC-----CCccEEEeC
Q psy10370 172 MLQFRGNIVVDGPP-----SYAE-----DTWDWVRFN 198 (280)
Q Consensus 172 ~~RFRpNIvv~g~~-----pf~E-----D~W~~l~IG 198 (280)
.+|-||||+|.|.+ -+.| -..+.|-||
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 45899999999863 2222 245788887
No 11
>KOG2362|consensus
Probab=37.79 E-value=29 Score=31.87 Aligned_cols=93 Identities=14% Similarity=-0.053 Sum_probs=62.4
Q ss_pred ceEEEEEcCCCceEeeccccceeEEEEEEeCCCcEEEE--EEecCCceeEEEecccccccceeEeeeeeecceeeeeecc
Q psy10370 10 RSFVLFNEKEKNFISSKKFNHLLLIQTEYMGGGAFQFS--VYNQPSYEKLTIQVADILQTSHTKSFTLYVDEVLEAFDCG 87 (280)
Q Consensus 10 R~~~lvd~~~g~~lt~r~~p~L~~i~~~i~~~~~l~~~--~l~~p~~~~l~v~l~~~~~~~~~~~~~~v~~~~~~~~d~g 87 (280)
+-|++.. ..+..+++.+.+....+--.. ..|.+..+ ...+++++.+.+.+..... .+.-. .+|.....+.+.+
T Consensus 87 kg~~iTa-Rv~P~l~~ies~~~~~~~~v~-~~~~~~~s~~~~~~l~~~~~~~~t~~~~~-~~dg~--~cgd~~~~~~s~~ 161 (336)
T KOG2362|consen 87 KGKFITA-RVKPKLVLIESEMPDGAFLVD-WPGPEKDSVLVFRVLGNKRLKVATLFPDL-SADGY--DCGDWVASAFSEG 161 (336)
T ss_pred cceEEEe-eccceEEEeecccccceeEEe-cCCCcchhhhhhhhccCCccccccccccc-eeecc--ccHhhhhhhHHhh
Confidence 6788887 889999999998887766655 33333311 1556667666665433221 11122 5566667788888
Q ss_pred chhhHHHHHhcCCCCeeEEec
Q psy10370 88 DLASDWFAKYLLNQSDRSIRL 108 (280)
Q Consensus 88 ~~~~~wlS~~Lg~~~~rLv~~ 108 (280)
.+..+|+..+.+ .++++.+.
T Consensus 162 ~e~~~~~~~~~~-~~~~~er~ 181 (336)
T KOG2362|consen 162 IEEPNWRLIFVG-KGLYTERT 181 (336)
T ss_pred hhccchhhhhhc-Ccceeeec
Confidence 999999999999 48898854
No 12
>KOG2963|consensus
Probab=30.77 E-value=22 Score=33.11 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=19.1
Q ss_pred EEEeecccceeeeeeCCCCCCCC
Q psy10370 204 RQVKPCTRCILTTVHPDTGRKQP 226 (280)
Q Consensus 204 ~vv~pc~RC~~~~vDp~tG~~~~ 226 (280)
.....|.||.+++.|++||+.+.
T Consensus 170 vnlntikRcllinyn~dt~eIdm 192 (405)
T KOG2963|consen 170 VNLNTIKRCLLINYNRDTGEIDM 192 (405)
T ss_pred eeccceeEEEEEecCCCCCeeee
Confidence 34457899999999999998763
No 13
>CHL00112 rpl28 ribosomal protein L28; Provisional
Probab=30.49 E-value=45 Score=23.14 Aligned_cols=11 Identities=9% Similarity=-0.109 Sum_probs=9.1
Q ss_pred ccccceeeeEE
Q psy10370 170 VSMLQFRGNIV 180 (280)
Q Consensus 170 ~~~~RFRpNIv 180 (280)
-.-++|+|||-
T Consensus 24 kTkR~f~pNLq 34 (63)
T CHL00112 24 RTKKLQKVNLQ 34 (63)
T ss_pred ccCceeccccc
Confidence 46889999994
No 14
>KOG0462|consensus
Probab=30.02 E-value=69 Score=32.03 Aligned_cols=50 Identities=30% Similarity=0.381 Sum_probs=34.4
Q ss_pred eeeCCCCCCCCCCChHHHHHhhhCCCchhhcccCCCCceeeeeEEee-cCCEEeeCCeEEEeeeC
Q psy10370 216 TVHPDTGRKQPDSQPLKMLQMYRAVPDLERRKVENFAPMFGVYMGVH-RTGYVNVGDDVYVGCDD 279 (280)
Q Consensus 216 ~vDp~tG~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~-~~G~I~VGD~V~v~~~~ 279 (280)
.|-|-+|.++ .||+.|.-.- .|+ .+-|+-+.+. ..|.|++||.|....++
T Consensus 233 rVPpP~~~~d---~plr~Lifds---------~yD--~y~G~I~~vrv~~G~vrkGdkV~~~~t~ 283 (650)
T KOG0462|consen 233 RVPPPKGIRD---APLRMLIFDS---------EYD--EYRGVIALVRVVDGVVRKGDKVQSAATG 283 (650)
T ss_pred hCCCCCCCCC---cchHHHhhhh---------hhh--hhcceEEEEEEeeeeeecCCEEEEeecC
Confidence 3556788887 7999985421 122 2566655554 68999999999887654
No 15
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=25.63 E-value=76 Score=24.61 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=19.0
Q ss_pred eeeeeEEee-cCCEEeeCCeEEEee
Q psy10370 254 MFGVYMGVH-RTGYVNVGDDVYVGC 277 (280)
Q Consensus 254 ~fG~~~~~~-~~G~I~VGD~V~v~~ 277 (280)
-+|..+.+. ..|+|++||.|-+-.
T Consensus 13 G~G~t~dvIl~~GtL~~GD~Iv~g~ 37 (110)
T cd03703 13 GLGTTIDVILYDGTLREGDTIVVCG 37 (110)
T ss_pred CCceEEEEEEECCeEecCCEEEEcc
Confidence 378777654 799999999998754
No 16
>PRK00359 rpmB 50S ribosomal protein L28; Reviewed
Probab=22.25 E-value=76 Score=22.83 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=9.2
Q ss_pred ccccceeeeEE
Q psy10370 170 VSMLQFRGNIV 180 (280)
Q Consensus 170 ~~~~RFRpNIv 180 (280)
-.-++|+|||-
T Consensus 24 kTkR~~~pNlq 34 (76)
T PRK00359 24 KTKRRFLPNLQ 34 (76)
T ss_pred ccCceecccce
Confidence 46899999995
No 17
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=21.71 E-value=57 Score=21.93 Aligned_cols=14 Identities=29% Similarity=0.448 Sum_probs=10.7
Q ss_pred EEEeecccceeeee
Q psy10370 204 RQVKPCTRCILTTV 217 (280)
Q Consensus 204 ~vv~pc~RC~~~~v 217 (280)
.+-..|+||..+|-
T Consensus 22 yle~KCPrCK~vN~ 35 (60)
T COG4416 22 YLEKKCPRCKEVNE 35 (60)
T ss_pred eeeecCCccceeee
Confidence 45678999998753
No 18
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=21.49 E-value=1.3e+02 Score=20.50 Aligned_cols=30 Identities=20% Similarity=0.549 Sum_probs=22.7
Q ss_pred CCccCCCccEEEeCCCeEEEEEeecccceee
Q psy10370 185 PSYAEDTWDWVRFNSDVITRQVKPCTRCILT 215 (280)
Q Consensus 185 ~pf~ED~W~~l~IG~~~~~~vv~pc~RC~~~ 215 (280)
-|--.+.|+-+++|.+..|+ ...|.|=+|.
T Consensus 14 HPCG~~~Wei~R~GaDikik-C~gCg~~iml 43 (57)
T PF06107_consen 14 HPCGSNEWEIIRIGADIKIK-CLGCGRQIML 43 (57)
T ss_pred CCCCCCEEEEEEccCcEEEE-ECCCCCEEEE
Confidence 57778999999999777777 5566665554
No 19
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=21.21 E-value=1e+02 Score=22.98 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=16.6
Q ss_pred eeeeEEe-ecCCEEeeCCeEEE
Q psy10370 255 FGVYMGV-HRTGYVNVGDDVYV 275 (280)
Q Consensus 255 fG~~~~~-~~~G~I~VGD~V~v 275 (280)
.|..+.+ ...|+|++||.+.+
T Consensus 14 ~G~vatviV~~GtL~~Gd~iv~ 35 (95)
T cd03701 14 RGPVATVIVQNGTLKKGDVIVA 35 (95)
T ss_pred CCeeEEEEEEcCeEecCCEEEE
Confidence 6766665 48999999999865
No 20
>COG4110 Uncharacterized protein involved in stress response [General function prediction only]
Probab=21.00 E-value=1.5e+02 Score=24.71 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=32.8
Q ss_pred ccccccceEEEEEcCCCceEeeccccceeEEEEEEeC--------CCcEEEEEEecCCceeEEEecccccc
Q psy10370 4 DGCLEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYMG--------GGAFQFSVYNQPSYEKLTIQVADILQ 66 (280)
Q Consensus 4 ~Gl~~DR~~~lvd~~~g~~lt~r~~p~L~~i~~~i~~--------~~~l~~~~l~~p~~~~l~v~l~~~~~ 66 (280)
.|-..|-+|+.++.. +....++ .||.+-|-+ +|.++ |+-|+++++++.|+....
T Consensus 92 tG~~~dGE~l~Ing~--~~khik~----vLi~aFIYEG~~~w~~~dGvvT---ik~P~~~~I~~qm~e~~~ 153 (200)
T COG4110 92 TGDVSDGEWLHINGR--EWKHIKE----VLIYAFIYEGVPSWDKTDGVVT---IKVPDQPPIETQLTEGEN 153 (200)
T ss_pred CCcccCCceEEEcch--hhhhhhh----eeeEEEEecCCcCccccCCEEE---EecCCCCceEEEccCCcc
Confidence 345556666666521 2222222 444444311 57899 999999999999977654
Done!