Query psy10370
Match_columns 280
No_of_seqs 152 out of 1173
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 16:10:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2exn_A Hypothetical protein BO 99.9 1.1E-23 3.6E-28 169.6 11.6 100 7-114 22-123 (136)
2 1oru_A YUAD protein; structura 99.7 5.7E-18 1.9E-22 144.0 10.1 118 142-279 64-185 (195)
3 1o65_A Hypothetical protein YI 99.4 1E-12 3.5E-17 115.0 10.2 109 145-278 67-177 (246)
4 3lyd_A Uncharacterized protein 16.2 45 0.0015 26.5 1.0 14 169-182 43-56 (161)
5 1yua_A Topoisomerase I; gene-r 15.9 99 0.0034 23.0 2.7 25 7-31 22-46 (122)
6 3iz5_K 60S ribosomal protein L 14.9 46 0.0016 27.6 0.8 20 2-22 1-20 (206)
7 2gdl_A Myeloid antimicrobial p 13.3 39 0.0013 18.5 -0.1 10 172-181 14-23 (31)
8 2rhf_A DNA helicase RECQ; HRDC 12.8 60 0.0021 21.9 0.8 22 143-164 23-44 (77)
9 2b3g_B Cellular tumor antigen 12.6 64 0.0022 17.3 0.6 10 88-97 16-25 (28)
10 1qd7_I S17 ribosomal protein; 11.5 1.1E+02 0.0038 21.7 1.9 19 260-278 43-61 (89)
No 1
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=99.90 E-value=1.1e-23 Score=169.57 Aligned_cols=100 Identities=15% Similarity=0.250 Sum_probs=88.0
Q ss_pred cccceEEEEEcCCCceEeeccccceeEEEEEEeCCCcEEEEEEecCCceeEEEecccccc--cceeEeeeeeecceeeee
Q psy10370 7 LEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYMGGGAFQFSVYNQPSYEKLTIQVADILQ--TSHTKSFTLYVDEVLEAF 84 (280)
Q Consensus 7 ~~DR~~~lvd~~~g~~lt~r~~p~L~~i~~~i~~~~~l~~~~l~~p~~~~l~v~l~~~~~--~~~~~~~~~v~~~~~~~~ 84 (280)
.|||+|||+| .+|+|+|||++|+|++|+|.+ +++.|+ |++||++++.|++++... .....+ +||++.+.++
T Consensus 22 ~~DR~wmlvd-~~G~~lt~r~~P~Lali~~~~-~~~~L~---l~~pg~~~l~vpl~~~~~~~~~~~~v--~vw~~~~~a~ 94 (136)
T 2exn_A 22 AYQKRWLVAN-DAGQWLNRDLCPRLAEVSVEL-RMGYLV---LKAPGMLRLDIPLDVIEDDDSVRYQM--LVGEQTVDVV 94 (136)
T ss_dssp GTCCSEEEEE-TTSCEECTTTCGGGGCCEEEE-CSSEEE---EECSSSCEEEEESSCCCSSCSCEEEE--EETTEEEEEE
T ss_pred ccCCcEEEEe-CCCCEEEccCCccccEEEEEe-cCCEEE---EEeCCCceEEEECCCccccccCceeE--EEeCCcceeE
Confidence 7999999999 799999999999999999999 567899 999999999999986641 244567 9999999999
Q ss_pred eccchhhHHHHHhcCCCCeeEEecCCCCcc
Q psy10370 85 DCGDLASDWFAKYLLNQSDRSIRLGLSTNR 114 (280)
Q Consensus 85 d~g~~~~~wlS~~Lg~~~~rLv~~~~~~r~ 114 (280)
|||+++++|||+||| .++||++.+...++
T Consensus 95 d~g~~~~~W~S~~Lg-~p~rLv~~~~~~~R 123 (136)
T 2exn_A 95 DEGELAAAWISNHAG-VPCRILKVHPDMAE 123 (136)
T ss_dssp ECCHHHHHHHHHHTC-SSEEEEEECTTTCC
T ss_pred eccHHHHHHHHHHhC-CCeEEEEcCCCCcc
Confidence 999999999999999 59999977654433
No 2
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=99.74 E-value=5.7e-18 Score=144.05 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=95.5
Q ss_pred cCcCeeeeecHhHHHHHHHhhcccCCCCccccceeeeEEEeCC-CCccCCCccEEEeCCC-eEEEEEeecccceee--ee
Q psy10370 142 ADMTSYMVLNENSLRDLNKKMSDIGVEDVSMLQFRGNIVVDGP-PSYAEDTWDWVRFNSD-VITRQVKPCTRCILT--TV 217 (280)
Q Consensus 142 ~D~~p~~lis~~Sl~~l~~~l~~~~~~~~~~~RFRpNIvv~g~-~pf~ED~W~~l~IG~~-~~~~vv~pc~RC~~~--~v 217 (280)
.+..+++|++.+|+++++++++. +.+++.+||+||+++|. ..++.+-|++|+|| + ++|+++++|.||..+ ++
T Consensus 64 ~~~r~V~l~~~e~~~~~~~~~g~---~~l~~g~fgeNl~v~Gi~~~~~l~iG~~l~iG-~~a~leVt~~~~pC~~~~~~i 139 (195)
T 1oru_A 64 FNRRQISIVSIEECNEIALKMGV---PRILPEWLGANVAVSGMPDLTSLKEGSRIIFP-SGAALLCEGENDPCIQPGEVI 139 (195)
T ss_dssp ECCCCEEEEEHHHHHHHHHHHTC---SCCCGGGGTCSEEEESCTTGGGCCTTCEEECT-TSCEEEEEEECCCCHHHHHHH
T ss_pred CCCceEEECCHHHHHHHHHHcCC---CCCCcccccCCEEEeCCCChhhCCCCCEEEEC-CCEEEEEeeccCCCCCCcccc
Confidence 45688999999999999998875 14999999999999998 66666678999999 7 999999999999985 56
Q ss_pred eCCCCCCCCCCChHHHHHhhhCCCchhhcccCCCCceeeeeEEeecCCEEeeCCeEEEeeeC
Q psy10370 218 HPDTGRKQPDSQPLKMLQMYRAVPDLERRKVENFAPMFGVYMGVHRTGYVNVGDDVYVGCDD 279 (280)
Q Consensus 218 Dp~tG~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~G~I~VGD~V~v~~~~ 279 (280)
++.++.. ....+.+.... ...+|+|+.|.++|.|++||+|.++.++
T Consensus 140 ~~~~~~~---~g~~~~~~~~~-------------~~r~G~~~rVl~~G~I~~GD~v~l~~~~ 185 (195)
T 1oru_A 140 QSYYPDQ---PKLASAFVRHA-------------LGIRGIVCIVERPGAVYTGDEIEVHSYQ 185 (195)
T ss_dssp HHHSTTS---TTHHHHHHHHS-------------TTSSCEEEEEEECEEEETTCEEEEEEEC
T ss_pred chhcccc---cchHHHHHhhc-------------cCCccEEEEEecCceEcCCCEEEEEeCC
Confidence 6655322 14555554421 1369999999999999999999998764
No 3
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=99.40 E-value=1e-12 Score=114.95 Aligned_cols=109 Identities=13% Similarity=0.178 Sum_probs=88.2
Q ss_pred CeeeeecHhHHHHHHHhhcccCCCCccccceeeeEEEeCCCCccCCCc--cEEEeCCCeEEEEEeecccceeeeeeCCCC
Q psy10370 145 TSYMVLNENSLRDLNKKMSDIGVEDVSMLQFRGNIVVDGPPSYAEDTW--DWVRFNSDVITRQVKPCTRCILTTVHPDTG 222 (280)
Q Consensus 145 ~p~~lis~~Sl~~l~~~l~~~~~~~~~~~RFRpNIvv~g~~pf~ED~W--~~l~IG~~~~~~vv~pc~RC~~~~vDp~tG 222 (280)
.++++++.+|++.+++.++.... .++.-+||.||+++|.. +++-| +.|+|| +|+|+|+.||.+|.-.+.. +|
T Consensus 67 rqV~l~~~E~~~~~~~~~g~~~~-~l~pg~fgENLtv~Gl~--~~~l~iG~rlrIG-~avLeVTq~r~PC~~~~~~--~g 140 (246)
T 1o65_A 67 RALCHYPREHYLYWAREFPEQAE-LFVAPAFGENLSTDGLT--ESNVYMGDIFRWG-EALIQVSQPRSPCYKLNYH--FD 140 (246)
T ss_dssp GSEEEEETHHHHHHHHHCGGGGG-GCSTTTTCCSEEESSCC--TTTCBTTCEEEET-TEEEEEEEECCCCTHHHHH--TT
T ss_pred CeEEECCHHHHHHHHHHhCCCcc-cCCcccccCCEEECCcc--hhhCCCCCEEEEC-CEEEEEEeCcCccHhHHHH--hc
Confidence 67999999999999988765100 37899999999999974 34457 999999 9999999999999988765 34
Q ss_pred CCCCCCChHHHHHhhhCCCchhhcccCCCCceeeeeEEeecCCEEeeCCeEEEeee
Q psy10370 223 RKQPDSQPLKMLQMYRAVPDLERRKVENFAPMFGVYMGVHRTGYVNVGDDVYVGCD 278 (280)
Q Consensus 223 ~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~G~I~VGD~V~v~~~ 278 (280)
.. ...+.|.+. ...|+|+.|.++|.|++||+|.++++
T Consensus 141 ~~----~~~~~~~~~---------------~r~G~y~rVl~~G~V~~GD~v~l~~r 177 (246)
T 1o65_A 141 IS----DIAQLMQNT---------------GKVGWLYSVIAPGKVSADAPLELVSR 177 (246)
T ss_dssp CT----THHHHHHHH---------------TCCCEEEEEEECEEEETTSCEEEEEC
T ss_pred Cc----CHHHHHhhC---------------CCcEEEEEEeeCcEEcCCCEEEEecC
Confidence 33 344555442 25999999999999999999999875
No 4
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=16.16 E-value=45 Score=26.52 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=11.0
Q ss_pred CccccceeeeEEEe
Q psy10370 169 DVSMLQFRGNIVVD 182 (280)
Q Consensus 169 ~~~~~RFRpNIvv~ 182 (280)
++-..-||||+||.
T Consensus 43 ~~~~~~F~pN~vVt 56 (161)
T 3lyd_A 43 HTPPQGFTPNIIGT 56 (161)
T ss_dssp SSCCSSSCCEEEEE
T ss_pred CCCCCCccccEEEE
Confidence 34466799999998
No 5
>1yua_A Topoisomerase I; gene-regulating protein, DNA binding protein; NMR {Escherichia coli} SCOP: g.41.3.3 g.41.3.3
Probab=15.86 E-value=99 Score=23.01 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.7
Q ss_pred cccceEEEEEcCCCceEeeccccce
Q psy10370 7 LEDRSFVLFNEKEKNFISSKKFNHL 31 (280)
Q Consensus 7 ~~DR~~~lvd~~~g~~lt~r~~p~L 31 (280)
..|--|.|.|...|-|+.+.++|+-
T Consensus 22 k~d~~fVLRDGAsGlFlAAs~FPK~ 46 (122)
T 1yua_A 22 KSDAYFVLRDGAAGVFLAANTFPKS 46 (122)
T ss_dssp SSSCEEEEECCSSSCEEEETTTTSC
T ss_pred ccCCEEEeeCCchhhhhhhccCCcc
Confidence 3577899999999999999999974
No 6
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=14.92 E-value=46 Score=27.59 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=16.4
Q ss_pred CcccccccceEEEEEcCCCce
Q psy10370 2 VQDGCLEDRSFVLFNEKEKNF 22 (280)
Q Consensus 2 ~~~Gl~~DR~~~lvd~~~g~~ 22 (280)
|-+|+.+.|.|.|+| .+|+.
T Consensus 1 ~~~~~~f~r~W~VID-A~g~~ 20 (206)
T 3iz5_K 1 MVSGSGVCAKRVVVD-ARHHM 20 (206)
T ss_dssp CCCSSSCCSSCCEEE-CTTBB
T ss_pred CccccccceeEEEEe-CCCCc
Confidence 457999999999999 66653
No 7
>2gdl_A Myeloid antimicrobial peptide 27; cathelicidin, alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=13.33 E-value=39 Score=18.46 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=7.6
Q ss_pred ccceeeeEEE
Q psy10370 172 MLQFRGNIVV 181 (280)
Q Consensus 172 ~~RFRpNIvv 181 (280)
++||||.+.|
T Consensus 14 irrfrpkvti 23 (31)
T 2gdl_A 14 IRRFRPKVTI 23 (31)
T ss_dssp CCCCTTCCHH
T ss_pred HHhcCCceEE
Confidence 7899997643
No 8
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=12.83 E-value=60 Score=21.89 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=19.7
Q ss_pred CcCeeeeecHhHHHHHHHhhcc
Q psy10370 143 DMTSYMVLNENSLRDLNKKMSD 164 (280)
Q Consensus 143 D~~p~~lis~~Sl~~l~~~l~~ 164 (280)
|.+|+.|++.++|.++....+.
T Consensus 23 ~vpp~~I~~d~~L~~iA~~~P~ 44 (77)
T 2rhf_A 23 GYSAFVVFTNATLEALAARQPR 44 (77)
T ss_dssp CCCHHHHCCHHHHHHHHHHCCC
T ss_pred CCCcceeeCHHHHHHHHHhCCC
Confidence 6689999999999999998875
No 9
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=12.58 E-value=64 Score=17.32 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=7.6
Q ss_pred chhhHHHHHh
Q psy10370 88 DLASDWFAKY 97 (280)
Q Consensus 88 ~~~~~wlS~~ 97 (280)
+.+.+|||+-
T Consensus 16 ddi~qw~s~d 25 (28)
T 2b3g_B 16 DDIEQWFTED 25 (28)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHhhcC
Confidence 6788999953
No 10
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=11.46 E-value=1.1e+02 Score=21.68 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=13.9
Q ss_pred EeecCCEEeeCCeEEEeee
Q psy10370 260 GVHRTGYVNVGDDVYVGCD 278 (280)
Q Consensus 260 ~~~~~G~I~VGD~V~v~~~ 278 (280)
....+...++||.|.+.+.
T Consensus 43 aHDe~n~~k~GD~V~I~E~ 61 (89)
T 1qd7_I 43 AHDEHNEAKVGDIVKIMET 61 (89)
T ss_pred EeCCccCCCCCCEEEEEEc
Confidence 3344568999999998753
Done!