RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10370
(280 letters)
>d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis
[TaxId: 1423]}
Length = 182
Score = 50.4 bits (120), Expect = 3e-08
Identities = 24/123 (19%), Positives = 37/123 (30%), Gaps = 15/123 (12%)
Query: 154 SLRDLNKKMSDIGVEDVSMLQFRGNIVVDG-PPSYAEDTWDWVRFNSDVITRQVKPCTRC 212
S+ + N+ +GV + N+ V G P + + F S C
Sbjct: 70 SIEECNEIALKMGVPRILPEWLGANVAVSGMPDLTSLKEGSRIIFPSGAALLCEGENDPC 129
Query: 213 ILTTVHPDTGRKQPDSQPLKMLQMYRAVPDLERRKVENFAPMFGVYMGVHRTGYVNVGDD 272
I Y P L V + + G+ V R G V GD+
Sbjct: 130 IQPGEVIQ--------------SYYPDQPKLASAFVRHALGIRGIVCIVERPGAVYTGDE 175
Query: 273 VYV 275
+ V
Sbjct: 176 IEV 178
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella
bronchiseptica [TaxId: 518]}
Length = 128
Score = 42.3 bits (99), Expect = 7e-06
Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 9/108 (8%)
Query: 1 EVQDGCLEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYMGGGAFQFSVYNQPSYEKLTIQ 60
+ + +++ N+ + +++ L + E G V P +L I
Sbjct: 16 TQSEAAAYQKRWLVANDAGQ-WLNRDLCPRLAEVSVELRMGYL----VLKAPGMLRLDIP 70
Query: 61 VADILQTSHTKSFTLYVDEVLEAFDCGDLASDWFAKYLLNQSDRSIRL 108
+ I + L ++ ++ D G+LA+ W + + R+
Sbjct: 71 LDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHA----GVPCRI 114
>d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli
[TaxId: 562]}
Length = 233
Score = 33.0 bits (75), Expect = 0.028
Identities = 13/116 (11%), Positives = 30/116 (25%), Gaps = 26/116 (22%)
Query: 160 KKMSDIGVEDVSMLQFRGNIVVDGPPSYAEDTWDWVRFNSDV--ITRQVKPCTRCILTTV 217
+ E F N+ DG D R+ + +++ PC +
Sbjct: 77 AREFPEQAELFVAPAFGENLSTDGLTESNVYMGDIFRWGEALIQVSQPRSPCYKL----- 131
Query: 218 HPDTGRKQPDSQPLKMLQMYRAVPDLERRKVENFAPMFGVYMGVHRTGYVNVGDDV 273
+ + + + + + + G V G V+ +
Sbjct: 132 ----------NYHFDISDIAQLMQNTGKV---------GWLYSVIAPGKVSADAPL 168
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus
(Endothia parasitica) [TaxId: 5116]}
Length = 330
Score = 31.1 bits (69), Expect = 0.12
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 118 IGDNYLRKYTTVYDNVNDEDIG 139
GD L+ V++ +G
Sbjct: 305 FGDVALKAAFVVFNGATTPTLG 326
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}
Length = 357
Score = 28.8 bits (63), Expect = 0.75
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 13/111 (11%)
Query: 26 KKFNHLLLIQTEYMGGGAFQFSVYNQPSYEKLTIQVADILQTSHTKSFTLYVDEVLEAFD 85
+K L G Q S ++ + +S T ++ + ++L D
Sbjct: 247 EKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVD 306
Query: 86 CGDLASDWFAKYLLNQSDRSIRLGLSTNRRRSIGDNYLRKYTTVYDNVNDE 136
L + ++ I +G+ +LR + VYD +
Sbjct: 307 KSG--ETCMFIVLPDGGNQFI-----------VGNLFLRFFVNVYDFGKNR 344
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis)
[TaxId: 5482]}
Length = 334
Score = 28.7 bits (63), Expect = 0.76
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 97 YLLNQSDRSI-RLGLSTNRRRSIGDNYLRKYTTVYDNVNDE 136
+L SD SI G+S N +GDN+LR+ VYD +
Sbjct: 277 LILKDSDSSICYFGISRNDANILGDNFLRRAYIVYDLDDKT 317
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}
Length = 370
Score = 28.0 bits (61), Expect = 1.5
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 20/104 (19%)
Query: 34 IQTEYMGGGAFQFSVYNQPSYEKLTIQVADILQTSHTKSFTLYVDEV-LEAFDCGDLASD 92
I G S + S + + + ++ L D+ F+ D+ +
Sbjct: 279 IGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPT- 337
Query: 93 WFAKYLLNQSDRSIRLGLSTNRRRSIGDNYLRKYTTVYDNVNDE 136
+ + I +GD ++R+Y TV+D N++
Sbjct: 338 -------SSGELWI-----------LGDVFIRQYYTVFDRANNK 363
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae)
[TaxId: 5062]}
Length = 323
Score = 27.6 bits (60), Expect = 1.6
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 118 IGDNYLRKYTTVYDNVNDEDIG 139
GD +L+ V+D +G
Sbjct: 298 FGDVFLKSQYVVFDASGPR-LG 318
>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii
18 [TaxId: 306]}
Length = 242
Score = 27.5 bits (60), Expect = 1.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 167 VEDVSMLQFRGNIVVDGPPSYAEDTW 192
+++ S RG+ +V+G PS+ D
Sbjct: 9 IDNFSHFYDRGDHLVNGKPSFTVDQV 34
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium
janthinellum), penicillopepsin [TaxId: 5079]}
Length = 323
Score = 27.7 bits (60), Expect = 1.7
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 118 IGDNYLRKYTTVYDNVNDEDIG 139
GD +L+ V+D+ + +G
Sbjct: 298 FGDIFLKSQYVVFDSDGPQ-LG 318
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 387
Score = 27.3 bits (59), Expect = 2.4
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 118 IGDNYLRKYTTVYDNVNDEDIG 139
+G + + V+D IG
Sbjct: 335 MGAVIMEGFYVVFDRARKR-IG 355
>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 291
Score = 26.8 bits (59), Expect = 3.0
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 42 GAFQFSVYNQPSYEKLTIQVADILQTSHTKSFTLYVDEVLEAFDCGDLASDWFAKYLLNQ 101
F+ + + + ++ D S + + GD D +
Sbjct: 195 KGFKGELIHVFNKHDGALKNTDYFSQLKDNSNIILL---------GDSQGDLRMADGVAN 245
Query: 102 SDRSIRLGLSTNRRRSIGDNYLRKYTTVYDNV--NDEDIGV 140
+ +++G +R D L KY YD V +E + V
Sbjct: 246 VEHILKIGYLNDRV----DELLEKYMDSYDIVLVKEESLEV 282
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus
tulipiferae), Polyporopepsin [TaxId: 5319]}
Length = 340
Score = 26.8 bits (58), Expect = 3.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
G +L ++ +VYD N
Sbjct: 308 NGLTFLERFYSVYDTTNKR 326
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans)
[TaxId: 5476]}
Length = 342
Score = 26.8 bits (58), Expect = 3.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
+GDN+LR VYD ++E
Sbjct: 306 LGDNFLRSAYIVYDLDDNE 324
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading
enzyme) {Plasmodium falciparum, plasmepsin II [TaxId:
5833]}
Length = 329
Score = 26.5 bits (57), Expect = 3.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
+GD ++RKY TV+D N
Sbjct: 301 LGDPFMRKYFTVFDYDNHS 319
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus
chinensis) [TaxId: 4843]}
Length = 325
Score = 26.4 bits (57), Expect = 3.9
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
IGD +L+ V++ E
Sbjct: 299 IGDTFLKNNYVVFNQGVPE 317
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme)
{Plasmodium vivax [TaxId: 5855]}
Length = 373
Score = 26.5 bits (57), Expect = 4.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
+GD ++RKY TV+D +
Sbjct: 347 LGDPFMRKYFTVFDYDKES 365
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces
cerevisiae), proteinase A [TaxId: 4932]}
Length = 329
Score = 26.5 bits (57), Expect = 4.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
+GD +LRKY ++YD N+
Sbjct: 304 VGDAFLRKYYSIYDLGNNA 322
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 26.5 bits (57), Expect = 4.3
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
+G ++RK+ T +D N+
Sbjct: 312 LGATFIRKFYTEFDRRNNR 330
>g1htr.1 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens),
progastricsin (pepsinogen C) [TaxId: 9606]}
Length = 372
Score = 26.5 bits (57), Expect = 4.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
+GD +LR Y +VYD N+
Sbjct: 347 LGDVFLRSYYSVYDLGNNR 365
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus)
[TaxId: 9913]}
Length = 323
Score = 26.1 bits (56), Expect = 4.7
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
+GD ++R+Y +V+D N+
Sbjct: 298 LGDVFIREYYSVFDRANNL 316
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua)
[TaxId: 8049]}
Length = 324
Score = 26.1 bits (56), Expect = 5.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
GD +LR Y T+YD N++
Sbjct: 299 FGDVFLRNYYTIYDRTNNK 317
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 335
Score = 26.1 bits (56), Expect = 5.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
+G ++RK+ T +D N+
Sbjct: 310 LGATFIRKFYTEFDRHNNR 328
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 381
Score = 26.2 bits (56), Expect = 5.4
Identities = 2/19 (10%), Positives = 6/19 (31%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
+G + + +D
Sbjct: 348 LGGAQMEDFVLDFDMEKKR 366
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase,
phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}
Length = 337
Score = 26.2 bits (56), Expect = 5.5
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
+GD ++ Y TV+D
Sbjct: 312 LGDVFMGPYHTVFDYGKLR 330
>g1lya.1 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) [TaxId:
9606]}
Length = 338
Score = 26.1 bits (56), Expect = 5.7
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
+GD ++ +Y TV+D N+
Sbjct: 313 LGDVFIGRYYTVFDRDNNR 331
>g1b5f.1 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin {Cynara
cardunculus [TaxId: 4265]}
Length = 326
Score = 25.8 bits (55), Expect = 5.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 118 IGDNYLRKYTTVYDNVNDE 136
+GD ++R Y TV+D N
Sbjct: 301 LGDVFMRPYHTVFDYGNLL 319
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth
(Mamestra brassicae) [TaxId: 55057]}
Length = 101
Score = 24.6 bits (54), Expect = 7.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 125 KYTTVYDNVNDEDI 138
KYT YDN+N ++I
Sbjct: 1 KYTDKYDNINLDEI 14
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,054,742
Number of extensions: 48152
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 31
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)