BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10371
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NE7|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|B Chain B, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|C Chain C, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|D Chain D, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|E Chain E, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|F Chain F, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
Length = 289
Score = 245 bits (626), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/201 (60%), Positives = 142/201 (70%), Gaps = 6/201 (2%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVXXXXXXXXXXXMYKKLIEYHQQGK 60
M+LIIL+ S +EW+A+Y+ +I F PGP+ YF YKKLIEY++ G
Sbjct: 1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD 60
Query: 61 ISFKYVKTFNMDEY------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQ 114
+SFKYVKTFNMDEY +NFF HIDI PEN HILDGNA DL AEC
Sbjct: 61 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA 120
Query: 115 YEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKK 174
+E+ IK AGGI LFVGGIGPDGHIAFNEPGSSL SRTR+KTLA +T+ ANARFFD ++ K
Sbjct: 121 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK 180
Query: 175 VPKEALTVGVGTVMDAQEVRI 195
VP ALTVGVGTVMDA+EV I
Sbjct: 181 VPTMALTVGVGTVMDAREVMI 201
>pdb|1HOR|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOR|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOT|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOT|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1CD5|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T Conformer
pdb|1FQO|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FQO|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FRZ|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FRZ|B Chain B, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS5|B Chain B, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS6|A Chain A, Glucosamine-6-phosphate Deaminase From E.coli, T
Conformer, At 2.2a Resolution
pdb|1FSF|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 1.9a Resolution
pdb|2WU1|A Chain A, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites.
pdb|2WU1|B Chain B, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites
Length = 266
Score = 220 bits (560), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/202 (53%), Positives = 141/202 (69%), Gaps = 8/202 (3%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVXXXXXXXXXXXMYKKLIEYHQQGK 60
MRLI L V +W+AR+++ +I FKP D FV YK L+E H+ G+
Sbjct: 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQ 60
Query: 61 ISFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECV 113
+SFK+V TFNMDEY ++ + + R NFF H+DI EN+++L+GNAPD+ AEC
Sbjct: 61 VSFKHVVTFNMDEYVGLPKEHPESYYSFMHR-NFFDHVDIPAENINLLNGNAPDIDAECR 119
Query: 114 QYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIK 173
QYE+ I+ G IHLF+GG+G DGHIAFNEP SSLASRTR+KTL +T AN+RFFDND+
Sbjct: 120 QYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVN 179
Query: 174 KVPKEALTVGVGTVMDAQEVRI 195
+VPK ALTVGVGT++DA+EV I
Sbjct: 180 QVPKYALTVGVGTLLDAEEVMI 201
>pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of The
Glucosamine-6-Phosphate Deaminase From E.Coli
Length = 266
Score = 217 bits (553), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 107/202 (52%), Positives = 140/202 (69%), Gaps = 8/202 (3%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVXXXXXXXXXXXMYKKLIEYHQQGK 60
MRLI L V +W+AR+++ +I FKP D FV YK L+E H+ G+
Sbjct: 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQ 60
Query: 61 ISFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECV 113
+SFK+V TFNMDEY ++ + + R NFF H+DI EN+++L+GNAPD+ AEC
Sbjct: 61 VSFKHVVTFNMDEYVGLPKEHPESYYSFMHR-NFFDHVDIPAENINLLNGNAPDIDAECR 119
Query: 114 QYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIK 173
QYE+ I+ G IHLF+GG+G DGHIAFNEP SSLASRTR+KTL +T AN+RF DND+
Sbjct: 120 QYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFADNDVN 179
Query: 174 KVPKEALTVGVGTVMDAQEVRI 195
+VPK ALTVGVGT++DA+EV I
Sbjct: 180 QVPKYALTVGVGTLLDAEEVMI 201
>pdb|3HN6|A Chain A, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|B Chain B, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|C Chain C, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|D Chain D, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|E Chain E, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|F Chain F, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
Length = 289
Score = 203 bits (517), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 146/218 (66%), Gaps = 6/218 (2%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVXXXXXXXXXXXMYKKLIEYHQQGK 60
MRLII ++++W+A +V +KI +F P +N F+ MYK LIE ++ K
Sbjct: 22 MRLIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELNKNKK 81
Query: 61 ISFKYVKTFNMDEY------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQ 114
ISF+ V TFNMDEY +NFFSHIDI+ EN++IL+GNA +L EC +
Sbjct: 82 ISFQNVITFNMDEYIGIEENHPESYHSFMWNNFFSHIDIKKENINILNGNASNLKKECEE 141
Query: 115 YEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKK 174
YEK IK GGI LFVGGIGPDGHIAFNEPGSSL SRTR+KTL Q+T+ AN+RFF+ D+ K
Sbjct: 142 YEKKIKSFGGIMLFVGGIGPDGHIAFNEPGSSLTSRTRIKTLTQDTIIANSRFFEGDVNK 201
Query: 175 VPKEALTVGVGTVMDAQEVRICYGFVDSYKLRKPAVPR 212
VPK ALTVG+GT+MD+QEV I + + K A+ +
Sbjct: 202 VPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAIEK 239
>pdb|2BKV|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKV|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
Length = 242
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 7/151 (4%)
Query: 49 YKKLIEYHQQGKISFKYVKTFNMDEYGR------NFLTKLFRHNFFSHIDIQPENVHILD 102
Y++LI HQ +SF+ + T N+DEY N FF HID +P I +
Sbjct: 44 YRQLIRLHQTENLSFQNITTVNLDEYAGLSSDDPNSYHFYMNDRFFQHIDSKPSRHFIPN 103
Query: 103 GNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLE 162
GNA DL AEC +YE+ + G + + GIG +GHI FNEPG+S SRT + TL ++T +
Sbjct: 104 GNADDLEAECRRYEQLVDSLGDTDIQLLGIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQ 163
Query: 163 ANARFFDNDIKKVPKEALTVGVGTVMDAQEV 193
ANAR+F + I VPK+ALT+G+ T++ ++ +
Sbjct: 164 ANARYFPS-IDSVPKKALTMGIQTILSSKRI 193
>pdb|2RI0|A Chain A, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) From S. Mutans
pdb|2RI0|B Chain B, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) From S. Mutans
Length = 234
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 86/156 (55%), Gaps = 16/156 (10%)
Query: 48 MYKKLIEYHQQGKISFKYVKTFNMDEY------GRNFLTKLFRHNFFSHIDIQP-ENVHI 100
+YK++ E H + F + + N+DEY + + N F+ +P + ++
Sbjct: 43 LYKEIRESH----LDFSDMVSINLDEYVGLSADDKQSYAYFMKQNLFAA---KPFKKSYL 95
Query: 101 LDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQET 160
+G A DL E Y++ + + I L + GIG + HI FNEPG++ +S+T L L T
Sbjct: 96 PNGLAADLAKETEYYDQILAQYP-IDLQILGIGRNAHIGFNEPGTAFSSQTHLVDLTPST 154
Query: 161 LEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC 196
+ AN+RFF+ + VPK+A+++G+ ++M A+ + +
Sbjct: 155 IAANSRFFEK-AEDVPKQAISMGLASIMSAKMILLM 189
>pdb|2RI1|A Chain A, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) With Glcn6p From S. Mutans
pdb|2RI1|B Chain B, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) With Glcn6p From S. Mutans
Length = 235
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 86/156 (55%), Gaps = 16/156 (10%)
Query: 48 MYKKLIEYHQQGKISFKYVKTFNMDEY------GRNFLTKLFRHNFFSHIDIQP-ENVHI 100
+YK++ E H + F + + N+DEY + + N F+ +P + ++
Sbjct: 44 LYKEIRESH----LDFSDMVSINLDEYVGLSADDKQSYAYFMKQNLFAA---KPFKKSYL 96
Query: 101 LDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQET 160
+G A DL E Y++ + + I L + GIG + HI FNEPG++ +S+T L L T
Sbjct: 97 PNGLAADLAKETEYYDQILAQYP-IDLQILGIGRNAHIGFNEPGTAFSSQTHLVDLTPST 155
Query: 161 LEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC 196
+ AN+RFF+ + VPK+A+++G+ ++M A+ + +
Sbjct: 156 IAANSRFFEK-AEDVPKQAISMGLASIMSAKMILLM 190
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 87 FFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGG-IHLFVGGIGPDGHIA 139
FS I NVH +D + P + C +YE++I+ A L + G+GPDGH+A
Sbjct: 100 LFSRAKIPSGNVHYVDTSLP-IEKACEKYEREIRSATDQFDLAILGMGPDGHVA 152
>pdb|1PBT|A Chain A, The Crystal Structure Of Tm1154, Oxidoreductase, SolDEVB
Family From Thermotoga Maritima
Length = 244
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 87 FFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGG-IHLFVGGIGPDGHIA 139
FS I NVH +D + P + C +YE++I+ A L + G GPDGH+A
Sbjct: 110 LFSRAKIPSGNVHYVDTSLP-IEKACEKYEREIRSATDQFDLAILGXGPDGHVA 162
>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|E Chain E, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|C Chain C, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|B Chain B, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|F Chain F, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|D Chain D, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|H Chain H, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|G Chain G, Human Death-Associated Kinase Drp-1, Mutant S308d D40
Length = 321
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQY 115
+H D++PEN+ +LD N P H + + +
Sbjct: 137 AHFDLKPENIMLLDKNIPIPHIKLIDF 163
>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|B Chain B, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|C Chain C, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|D Chain D, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2CKE|A Chain A, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|B Chain B, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|C Chain C, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|D Chain D, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
Length = 321
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQY 115
+H D++PEN+ +LD N P H + + +
Sbjct: 137 AHFDLKPENIMLLDKNIPIPHIKLIDF 163
>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
Length = 321
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQY 115
+H D++PEN+ +LD N P H + + +
Sbjct: 137 AHFDLKPENIMLLDKNIPIPHIKLIDF 163
>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|D Chain D, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|E Chain E, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|F Chain F, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|G Chain G, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|H Chain H, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
Length = 321
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQY 115
+H D++PEN+ +LD N P H + + +
Sbjct: 137 AHFDLKPENIMLLDKNIPIPHIKLIDF 163
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQY 115
+H D++PEN+ +LD N P H + + +
Sbjct: 137 AHFDLKPENIMLLDKNIPIPHIKLIDF 163
>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|D Chain D, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|E Chain E, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|F Chain F, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|G Chain G, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|H Chain H, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
Length = 288
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQY 115
+H D++PEN+ +LD N P H + + +
Sbjct: 137 AHFDLKPENIMLLDKNIPIPHIKLIDF 163
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQY 115
+H D++PEN+ +LD N P+ + + +
Sbjct: 130 AHFDLKPENIMLLDKNVPNPRIKLIDF 156
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQY 115
+H D++PEN+ +LD N P+ + + +
Sbjct: 151 AHFDLKPENIMLLDKNVPNPRIKLIDF 177
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQY 115
+H D++PEN+ +LD N P+ + + +
Sbjct: 137 AHFDLKPENIMLLDKNVPNPRIKLIDF 163
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPD 135
S +D + HILDG D + E+D + G I FVGGIGPD
Sbjct: 56 SSVDEVVKTQHILDGKVIDPKRAIPRDEQD--KTGKI--FVGGIGPD 98
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 136 AHFDLKPENIMLLDRNVP 153
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 136 AHFDLKPENIMLLDRNVP 153
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 136 AHFDLKPENIMLLDRNVP 153
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 136 AHFDLKPENIMLLDRNVP 153
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 136 AHFDLKPENIMLLDRNVP 153
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 136 AHFDLKPENIMLLDRNVP 153
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 136 AHFDLKPENIMLLDRNVP 153
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 136 AHFDLKPENIMLLDRNVP 153
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 135 AHFDLKPENIMLLDRNVP 152
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 136 AHFDLKPENIMLLDRNVP 153
>pdb|1TO9|B Chain B, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHI 138
S +D+ EN++ NA EC + E +H FV GIG DG +
Sbjct: 9 SGVDLGTENLY-FQSNAXKFSEECRSAAAEWWEGSFVHPFVQGIG-DGTL 56
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 135 AHFDLKPENIMLLDRNVP 152
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 136 AHFDLKPENIMLLDRNVP 153
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 136 AHFDLKPENIMLLDRNVP 153
>pdb|1TO9|A Chain A, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHI 138
S +D+ EN++ NA EC + E +H FV GIG DG +
Sbjct: 9 SGVDLGTENLY-FQSNAXKFSEECRSAAAEWWEGSFVHPFVQGIG-DGTL 56
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 89 SHIDIQPENVHILDGNAP 106
+H D++PEN+ +LD N P
Sbjct: 136 AHFDLKPENIMLLDRNVP 153
>pdb|2Y6U|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form Ii)
pdb|2Y6V|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|B Chain B, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|C Chain C, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
Length = 398
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 25/91 (27%)
Query: 90 HIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLAS 149
H+D+ P H+++ APDL E + + IH FV L S
Sbjct: 314 HLDVIPGGSHLVNVEAPDLVIERINHH--------IHEFV-----------------LTS 348
Query: 150 RTRLKTLAQETLEANARFFDNDIKKVPKEAL 180
+ + Q TLE A FD EAL
Sbjct: 349 PLQSSHIPQLTLEERAVMFDRAFDSFKNEAL 379
>pdb|1Y89|A Chain A, Crystal Structure Of Devb Protein
pdb|1Y89|B Chain B, Crystal Structure Of Devb Protein
Length = 238
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 87 FFSHIDIQPENVH-ILDGNAPDLHAE--CVQYEKDIKEAGGIHLF---VGGIGPDGHIAF 140
FS I+ +N+H IL N P AE I G +F + G+G DGH A
Sbjct: 88 LFSKINXPAQNIHRILGENEPQAEAERFAQAXAHVIPTENGTPVFDWILLGVGADGHTAS 147
Query: 141 NEPGSSLASRTRLKTLA 157
PG + + L +A
Sbjct: 148 LFPGQTDYADANLSVVA 164
>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
Length = 448
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 124 GIHLFVGGIGPDGHIAFNEPGSS 146
G+HLF G + D H+ FNEPG +
Sbjct: 54 GLHLFPGMV--DVHVHFNEPGRT 74
>pdb|3OC6|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Smegmatis, Apo Form
Length = 248
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 18/99 (18%)
Query: 56 HQQGKISFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHIL---DGN- 104
+ G+I + V + DE RN K R HI I P NVH + DG
Sbjct: 60 ERSGEIDWSKVHIYWGDERFVPQDDDERN--DKQAREALLDHIGIPPVNVHAMAASDGEF 117
Query: 105 APDLHAECVQYEKDI-----KEAGGIHLFVGGIGPDGHI 138
DL A Y + + G + + G+G +GH+
Sbjct: 118 GDDLEAAAAGYAQLLSANFDSSVPGFDVHLLGMGGEGHV 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,686,386
Number of Sequences: 62578
Number of extensions: 266066
Number of successful extensions: 610
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 45
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)