Query psy10371
Match_columns 219
No_of_seqs 137 out of 1027
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 16:11:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00285 glucosamine-6-phospha 100.0 3.7E-58 7.9E-63 387.0 23.3 218 1-219 1-227 (253)
2 PRK09762 galactosamine-6-phosp 100.0 1E-55 2.2E-60 367.6 22.2 209 1-218 1-217 (232)
3 TIGR00502 nagB glucosamine-6-p 100.0 2.4E-55 5.1E-60 371.2 23.0 218 1-219 1-227 (259)
4 COG0363 NagB 6-phosphogluconol 100.0 1.5E-55 3.2E-60 366.2 19.0 206 1-218 1-215 (238)
5 TIGR01198 pgl 6-phosphoglucono 100.0 8.2E-55 1.8E-59 362.4 19.4 198 5-219 1-213 (233)
6 PLN02360 probable 6-phosphoglu 100.0 3.5E-53 7.5E-58 359.3 21.0 204 1-219 11-240 (268)
7 cd01400 6PGL 6PGL: 6-Phosphogl 100.0 1.5E-52 3.2E-57 346.1 18.6 193 10-219 1-206 (219)
8 PRK12358 putative 6-phosphoglu 100.0 4.8E-52 1E-56 347.1 21.7 207 1-219 1-217 (239)
9 PF01182 Glucosamine_iso: Gluc 100.0 1E-52 2.2E-57 342.3 15.7 184 12-210 1-199 (199)
10 PRK02122 glucosamine-6-phospha 100.0 5.1E-52 1.1E-56 386.8 21.8 217 1-219 28-254 (652)
11 KOG3147|consensus 100.0 8.5E-51 1.8E-55 330.6 18.4 205 1-219 9-227 (252)
12 KOG3148|consensus 100.0 2.8E-50 6.1E-55 315.3 13.8 213 1-213 1-220 (273)
13 PRK00443 nagB glucosamine-6-ph 100.0 1.3E-44 2.8E-49 305.8 22.7 218 1-219 1-227 (261)
14 cd01399 GlcN6P_deaminase GlcN6 100.0 2.7E-41 5.9E-46 280.5 20.6 203 10-218 1-211 (232)
15 cd00458 SugarP_isomerase Sugar 100.0 1.1E-33 2.4E-38 224.8 13.8 149 14-219 2-157 (169)
16 PF04198 Sugar-bind: Putative 97.2 0.00048 1E-08 58.2 4.4 176 10-212 36-238 (255)
17 COG2390 DeoR Transcriptional r 97.1 0.011 2.4E-07 51.6 11.8 179 11-212 99-301 (321)
18 PRK15418 transcriptional regul 96.1 0.043 9.4E-07 47.9 9.3 35 178-212 263-298 (318)
19 PF01171 ATP_bind_3: PP-loop f 86.9 3.1 6.8E-05 32.9 7.0 93 35-131 2-103 (182)
20 COG0037 MesJ tRNA(Ile)-lysidin 85.5 11 0.00023 32.1 10.1 108 16-131 6-127 (298)
21 TIGR02584 cas_NE0113 CRISPR-as 76.5 13 0.00028 30.5 6.8 59 13-73 99-157 (209)
22 TIGR02432 lysidine_TilS_N tRNA 73.7 37 0.0008 26.6 9.0 39 34-75 1-39 (189)
23 cd01992 PP-ATPase N-terminal d 73.5 34 0.00073 26.6 8.7 38 35-75 2-39 (185)
24 PRK10696 tRNA 2-thiocytidine b 70.4 22 0.00049 29.8 7.3 62 12-75 8-71 (258)
25 PRK10660 tilS tRNA(Ile)-lysidi 64.0 74 0.0016 29.0 9.8 51 22-75 6-56 (436)
26 PF09623 Cas_NE0113: CRISPR-as 62.8 44 0.00095 27.7 7.4 63 11-75 91-153 (224)
27 cd01993 Alpha_ANH_like_II This 61.4 44 0.00095 25.8 7.1 40 34-74 1-40 (185)
28 TIGR03642 cas_csx13 CRISPR-ass 59.1 30 0.00065 26.0 5.3 46 8-55 66-113 (124)
29 TIGR00884 guaA_Cterm GMP synth 59.0 1.1E+02 0.0024 26.6 9.6 47 21-75 7-53 (311)
30 PRK00074 guaA GMP synthase; Re 55.5 1.2E+02 0.0027 28.2 9.9 48 20-75 205-252 (511)
31 COG0171 NadE NAD synthase [Coe 54.8 23 0.00049 30.3 4.5 64 7-74 3-66 (268)
32 PF11019 DUF2608: Protein of u 54.7 50 0.0011 27.8 6.6 91 32-132 96-208 (252)
33 COG0513 SrmB Superfamily II DN 54.6 60 0.0013 30.2 7.7 66 3-73 103-182 (513)
34 PRK11634 ATP-dependent RNA hel 53.8 68 0.0015 30.8 8.1 62 3-73 78-157 (629)
35 cd00553 NAD_synthase NAD+ synt 53.1 26 0.00056 29.2 4.6 59 8-74 2-60 (248)
36 COG3588 Fructose-1,6-bisphosph 52.0 32 0.0007 29.7 4.9 34 36-69 256-289 (332)
37 PRK02090 phosphoadenosine phos 50.0 32 0.00069 28.6 4.7 36 33-75 41-76 (241)
38 PRK06850 hypothetical protein; 49.6 71 0.0015 29.9 7.2 44 32-75 34-79 (507)
39 COG0519 GuaA GMP synthase, PP- 49.1 1.8E+02 0.0039 25.3 11.0 48 20-75 11-58 (315)
40 PRK10590 ATP-dependent RNA hel 48.2 78 0.0017 28.8 7.3 26 44-73 132-157 (456)
41 PLN00206 DEAD-box ATP-dependen 46.8 97 0.0021 28.8 7.8 44 58-104 263-309 (518)
42 PF03808 Glyco_tran_WecB: Glyc 46.7 1.4E+02 0.003 23.3 8.1 24 110-134 88-111 (172)
43 PF00098 zf-CCHC: Zinc knuckle 46.3 13 0.00029 17.9 1.1 11 133-143 7-17 (18)
44 PRK01297 ATP-dependent RNA hel 44.6 85 0.0018 28.7 7.0 26 44-73 220-245 (475)
45 PTZ00110 helicase; Provisional 42.6 73 0.0016 29.9 6.3 26 44-73 260-285 (545)
46 PRK00768 nadE NAD synthetase; 41.8 47 0.001 28.3 4.5 35 8-45 17-51 (268)
47 TIGR00730 conserved hypothetic 41.2 76 0.0017 25.2 5.4 73 33-114 97-174 (178)
48 PTZ00323 NAD+ synthase; Provis 41.1 1.4E+02 0.0031 25.7 7.4 39 8-49 25-63 (294)
49 cd01713 PAPS_reductase This do 41.0 42 0.00092 25.2 3.8 37 35-75 2-38 (173)
50 PRK11776 ATP-dependent RNA hel 40.9 1.2E+02 0.0026 27.5 7.4 62 3-73 76-155 (460)
51 PRK13980 NAD synthetase; Provi 40.1 1.4E+02 0.0029 25.2 7.1 59 8-74 9-67 (265)
52 COG3969 Predicted phosphoadeno 39.4 1.4E+02 0.0031 26.6 7.0 56 11-73 11-66 (407)
53 KOG0452|consensus 37.5 54 0.0012 31.2 4.4 42 83-131 732-773 (892)
54 PF02540 NAD_synthase: NAD syn 37.4 49 0.0011 27.6 3.9 54 14-75 3-56 (242)
55 PRK04837 ATP-dependent RNA hel 35.8 1.6E+02 0.0034 26.4 7.2 25 45-73 141-165 (423)
56 COG1453 Predicted oxidoreducta 34.8 83 0.0018 28.3 4.9 51 20-75 132-182 (391)
57 TIGR00696 wecB_tagA_cpsF bacte 34.6 55 0.0012 26.0 3.6 21 113-134 90-110 (177)
58 KOG0347|consensus 34.5 1.2E+02 0.0025 29.0 6.0 79 3-88 267-369 (731)
59 PLN02347 GMP synthetase 34.1 3.4E+02 0.0074 25.6 9.2 38 32-75 229-266 (536)
60 PRK08557 hypothetical protein; 33.2 1.5E+02 0.0032 27.0 6.5 54 14-75 164-217 (417)
61 PF08759 DUF1792: Domain of un 32.8 1.2E+02 0.0025 25.3 5.3 39 11-53 21-59 (225)
62 PRK11192 ATP-dependent RNA hel 32.7 2.5E+02 0.0053 25.2 8.0 26 44-73 130-155 (434)
63 PF00274 Glycolytic: Fructose- 32.5 2.1E+02 0.0046 25.4 7.1 55 14-69 232-287 (348)
64 PF14417 MEDS: MEDS: MEthanoge 31.5 2.6E+02 0.0057 22.0 10.8 67 4-75 24-93 (191)
65 TIGR03183 DNA_S_dndC putative 31.3 76 0.0016 29.2 4.4 44 32-75 13-58 (447)
66 TIGR00552 nadE NAD+ synthetase 30.8 87 0.0019 26.0 4.4 40 11-53 4-43 (250)
67 PRK07024 short chain dehydroge 29.5 3E+02 0.0066 22.2 8.4 38 97-134 51-88 (257)
68 PRK00109 Holliday junction res 29.5 1.7E+02 0.0037 22.1 5.5 53 16-75 42-99 (138)
69 PRK00876 nadE NAD synthetase; 29.1 1E+02 0.0022 27.1 4.6 60 8-74 11-70 (326)
70 PRK15080 ethanolamine utilizat 28.3 85 0.0018 26.4 3.9 43 11-54 200-242 (267)
71 PHA02620 VP3; Provisional 28.1 1.2E+02 0.0025 26.9 4.6 44 9-58 177-220 (353)
72 KOG0235|consensus 27.5 3.4E+02 0.0073 22.4 7.1 67 7-75 132-202 (214)
73 PLN02746 hydroxymethylglutaryl 26.9 4.5E+02 0.0097 23.3 9.4 82 42-134 192-279 (347)
74 KOG3363|consensus 26.9 46 0.00099 26.3 1.8 22 123-144 110-131 (196)
75 COG1922 WecG Teichoic acid bio 26.3 82 0.0018 26.7 3.4 26 107-134 146-171 (253)
76 PRK05692 hydroxymethylglutaryl 25.7 4.2E+02 0.0092 22.6 9.9 83 41-134 149-237 (287)
77 PRK05253 sulfate adenylyltrans 25.6 2.5E+02 0.0054 24.3 6.4 98 33-139 28-142 (301)
78 cd00248 Mth938-like Mth938-lik 25.5 88 0.0019 22.6 3.1 22 115-137 44-65 (109)
79 PF00478 IMPDH: IMP dehydrogen 25.2 2.9E+02 0.0063 24.6 6.8 85 32-140 94-185 (352)
80 TIGR01536 asn_synth_AEB aspara 25.1 3E+02 0.0064 25.1 7.2 46 8-54 230-275 (467)
81 TIGR00424 APS_reduc 5'-adenyly 24.5 3.4E+02 0.0073 25.2 7.3 95 32-136 115-227 (463)
82 PF14737 DUF4470: Domain of un 24.4 2.6E+02 0.0055 19.6 5.8 39 32-73 22-61 (100)
83 PRK13794 hypothetical protein; 23.8 2.1E+02 0.0046 26.5 6.0 38 32-75 247-284 (479)
84 PF02662 FlpD: Methyl-viologen 23.8 61 0.0013 24.1 2.0 82 35-123 32-124 (124)
85 COG1105 FruK Fructose-1-phosph 23.7 4.6E+02 0.01 22.9 7.6 114 12-142 111-232 (310)
86 COG0794 GutQ Predicted sugar p 23.7 45 0.00098 27.2 1.3 18 127-144 42-59 (202)
87 KOG1205|consensus 23.6 1.3E+02 0.0028 25.9 4.2 38 97-134 64-101 (282)
88 PF04430 DUF498: Protein of un 23.5 81 0.0018 22.7 2.6 21 115-135 44-64 (110)
89 cd05560 Xcc1710_like Xcc1710_l 23.3 1E+02 0.0023 22.3 3.1 14 124-137 52-65 (109)
90 PRK13981 NAD synthetase; Provi 22.9 1.3E+02 0.0028 28.1 4.5 59 9-75 260-318 (540)
91 PRK03692 putative UDP-N-acetyl 22.9 1.1E+02 0.0023 25.7 3.5 22 112-134 146-167 (243)
92 TIGR02529 EutJ ethanolamine ut 22.7 1.3E+02 0.0028 24.9 4.0 40 14-54 176-215 (239)
93 COG4822 CbiK Cobalamin biosynt 22.6 1.8E+02 0.0038 24.3 4.5 60 5-75 32-91 (265)
94 cd06533 Glyco_transf_WecG_TagA 22.5 1.1E+02 0.0024 23.9 3.4 19 115-134 91-109 (171)
95 PF13177 DNA_pol3_delta2: DNA 22.4 1.2E+02 0.0025 23.4 3.4 48 2-54 104-151 (162)
96 PRK02628 nadE NAD synthetase; 22.3 3.3E+02 0.0072 26.4 7.2 60 9-71 341-400 (679)
97 PRK04537 ATP-dependent RNA hel 22.2 3.3E+02 0.0072 25.7 7.0 26 45-73 142-167 (572)
98 PF12829 Mhr1: Transcriptional 21.6 97 0.0021 22.0 2.5 32 34-65 53-84 (91)
99 PF07287 DUF1446: Protein of u 21.3 3.7E+02 0.0081 24.0 6.7 41 32-73 70-110 (362)
100 COG0406 phoE Broad specificity 20.7 4.2E+02 0.0092 20.8 6.6 63 7-73 123-189 (208)
101 PRK06194 hypothetical protein; 20.7 4.7E+02 0.01 21.4 7.1 38 97-134 56-93 (287)
102 cd00344 FBP_aldolase_I Fructos 20.5 2.5E+02 0.0053 24.8 5.3 44 8-56 233-276 (328)
103 PRK03359 putative electron tra 20.4 1.6E+02 0.0034 24.9 4.0 33 107-140 96-129 (256)
104 PF08940 DUF1918: Domain of un 20.2 42 0.00092 21.7 0.4 14 133-146 42-55 (58)
105 KOG2044|consensus 20.2 2.8E+02 0.0061 27.6 6.0 43 59-104 184-232 (931)
106 COG3469 Chitinase [Carbohydrat 20.2 1.3E+02 0.0028 25.7 3.4 16 123-139 98-113 (332)
No 1
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=3.7e-58 Score=387.04 Aligned_cols=218 Identities=51% Similarity=0.876 Sum_probs=200.2
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHh-hCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeeccc--c-c
Q psy10371 1 MRLIILDDVSNVAEWSARYVLKKITD-FKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEY--G-R 76 (219)
Q Consensus 1 m~i~v~~~~~~~~~~~a~~i~~~i~~-~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~--v-~ 76 (219)
|++++++|.+++++.+|++|.+.|++ ++++ ++.++|+||||+||+.+|+.|++.++..+++|++|+||++||| | .
T Consensus 1 m~i~~~~~~~~~~~~~a~~i~~~i~~~~~~~-~~~~~i~lsgG~tP~~~y~~L~~~~~~~~i~w~~v~if~~DEr~~Vp~ 79 (253)
T PTZ00285 1 MRIVISEDADAVADYTSNYIIKRINDFKPTS-DRPFVLGLPTGSTPLPTYQELIRAYREGRVSFSNVVTFNMDEYVGLPR 79 (253)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHHhhhc-CCCeEEEEcCCCCHHHHHHHHHHHHhhcCCchhHeEEECCcEEecCCC
Confidence 89999999999999999999999998 6665 8899999999999999999999988878999999999999996 5 6
Q ss_pred ch--HHH-HHHHhcCCCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEeecCCCcccccCCCCCCCCcceE
Q psy10371 77 NF--LTK-LFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRL 153 (219)
Q Consensus 77 ~~--~~~-~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGHiaslfP~~~~~~~~~~ 153 (219)
+| ||+ ++++.||++++||++|+|++++...+++++|++|++.|++.++||++|||||+|||||||||++++.+.+++
T Consensus 80 ~~~~Sn~~~~~~~l~~~~~ip~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGH~AslfP~~~~~~~~~~ 159 (253)
T PTZ00285 80 DHPQSYHYFMKENFFDHVDIKEENRHILNGTAPDLEEECRRYEEKIRAVGGIDLFLAGIGTDGHIAFNEPGSSLDSRTRV 159 (253)
T ss_pred CchHHHHHHHHHHHhccCCCCHhhEEcCCCCCcCHHHHHHHHHHHHHHhCCCcEEEeCCCCCCceeecCCCCccCCceEE
Confidence 66 777 579999999999999999999876789999999999999999999999999999999999999998888899
Q ss_pred EECchhhHHHhhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCCC-CCCCCC
Q psy10371 154 KTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPRT-NIIPSG 219 (219)
Q Consensus 154 v~l~~~t~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~~-~~~Pa~ 219 (219)
|.++..|+..+...++.+.+.+|.+|||||++.|++||+|+|+ +|++|+++|+++++++. +.+|+.
T Consensus 160 v~~~~~t~~~~~~~~~~~~~~~p~~riTlt~~~i~~a~~i~l~~~G~~K~~~l~~~l~~~~~~~~Pas 227 (253)
T PTZ00285 160 KSLNQETIDANARFFGNDISKVPTMALTVGIRTIMEAREVLLLATGASKAIAVARCVEGGVTHMCPAS 227 (253)
T ss_pred EECCHHHHHHHhhhccCCcCCCCCccEEcCHHHHHhCCEEEEEecCHHHHHHHHHHhcCCCCCccchH
Confidence 9999999887776665567888999999999999999999999 99999999999999874 478873
No 2
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=1e-55 Score=367.60 Aligned_cols=209 Identities=22% Similarity=0.389 Sum_probs=186.2
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc---cc
Q psy10371 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG---RN 77 (219)
Q Consensus 1 m~i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v---~~ 77 (219)
|++++++|.+++++.+|++|.+.|++ ++.++|+||||+||+.+|+.|++.++..++||+||+||++|||+ ++
T Consensus 1 m~i~i~~~~~~~~~~~a~~i~~~i~~-----~~~~~l~lsgGstP~~~y~~L~~~~~~~~l~w~~v~~f~~DE~v~vp~~ 75 (232)
T PRK09762 1 QTLQQVENYTALSERASEYLLAVIRS-----KPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLT 75 (232)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHH-----CCCeEEEECCCCCHHHHHHHHHHHHhhcCCCHHHeEEEcCcEEecCCCC
Confidence 89999999999999999999999876 56799999999999999999999887789999999999999984 56
Q ss_pred h--HHH-HHHHhcCCCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEeecCCCcccccCCCCCCCCcceEE
Q psy10371 78 F--LTK-LFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLK 154 (219)
Q Consensus 78 ~--~~~-~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGHiaslfP~~~~~~~~~~v 154 (219)
| ||+ +++++||+++++|++|+|++++... ++++|.+|++.|++.++||++|||||+|||||||||++++...++.+
T Consensus 76 ~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~~-~~~~~~~y~~~i~~~~~~Dl~lLGmG~DGH~A~n~P~~slfp~~~~~ 154 (232)
T PRK09762 76 MPGTCETFLQQHIVQPLGLREDQLISFRSEEI-NETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHIS 154 (232)
T ss_pred ccHHHHHHHHHHhcCCCCCCHHHEECCCCCcc-cHHHHHHHHHHHHhcCCCCEEEEccCCCCceecCCCCCCCCCCceee
Confidence 6 777 5799999999999999999998754 48889999999999999999999999999999999999888888877
Q ss_pred ECchhhHHHhhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCCC-CCCCC
Q psy10371 155 TLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPRT-NIIPS 218 (219)
Q Consensus 155 ~l~~~t~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~~-~~~Pa 218 (219)
.+++.++... .+. +.+++|.+|||||++.|++||+|+|+ +|++|+++++++++++. ..+||
T Consensus 155 ~l~~~~~~~~--~~~-~~~~~p~~riTlt~~~i~~A~~i~llv~G~~Ka~~l~~~l~~~~~~~~Pa 217 (232)
T PRK09762 155 QLDARTQQHE--MLK-TAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTAIPA 217 (232)
T ss_pred eccHhhhhhh--ccC-CCCCCCCccEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHHcCCCCCcccH
Confidence 7776654321 222 35788999999999999999999999 99999999999999874 57887
No 3
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=100.00 E-value=2.4e-55 Score=371.16 Aligned_cols=218 Identities=55% Similarity=0.948 Sum_probs=198.0
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHh-hCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeeccc--c-c
Q psy10371 1 MRLIILDDVSNVAEWSARYVLKKITD-FKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEY--G-R 76 (219)
Q Consensus 1 m~i~v~~~~~~~~~~~a~~i~~~i~~-~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~--v-~ 76 (219)
|++++|+|.+++++.+|+.|.+.+++ ..++ +++++|+||||+||+.+|+.|++.++..+++|++|+||++||| | .
T Consensus 1 m~i~~~~~~~~l~~~~a~~i~~~i~~~~~~~-~~~~~i~lsgGstP~~~y~~L~~~~~~~~i~w~~v~~f~~DEr~~vp~ 79 (259)
T TIGR00502 1 MRLIILQTYEELSKWAARHIANRINEFKPTA-ARPFVLGLPTGGTPIGTYKQLIELHQAGKISFQNVTTFNMDEYAGLSE 79 (259)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHhCccc-cCceEEEEcCCCChHHHHHHHHHHhhccCCchhHeEEEeCeecCCCCC
Confidence 89999999999999999999999999 4443 7899999999999999999999988888999999999999997 4 6
Q ss_pred ch--HHH-HHHHhcCCCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEeecCCCcccccCCCCCCCCcceE
Q psy10371 77 NF--LTK-LFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRL 153 (219)
Q Consensus 77 ~~--~~~-~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGHiaslfP~~~~~~~~~~ 153 (219)
+| ||+ +++++||+++++|++|+|++++...+++++|++|++.|++.++||+++||||+|||||||||++++.+.+++
T Consensus 80 ~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~~~~~Dl~llG~G~DGH~As~fP~~~~~~~~~~ 159 (259)
T TIGR00502 80 EHPESYHSFMHNNFFQHIDIKPENINILNGNAPDLEAECRRYEEKIRSYGGIDLFMGGIGPDGHIAFNEPGSSLTSRTRI 159 (259)
T ss_pred CchHHHHHHHHHHhcccCCCCHHHEecCCCCccCHHHHHHHHHHHHHHcCCCCEEEEccCCCCceecCCCCCCCCCceEE
Confidence 66 777 579999999999999999999876789999999999999999999999999999999999999988888888
Q ss_pred EECchhhHHHhhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCCC-CCCCCC
Q psy10371 154 KTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPRT-NIIPSG 219 (219)
Q Consensus 154 v~l~~~t~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~~-~~~Pa~ 219 (219)
+.+++.+...+.++|+.+.+.+|++|||||++.|++|++|+++ +|++|++++++++.++. ..+||.
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~p~~riTlt~~~i~~a~~vi~~~~G~~Ka~al~~al~~~~~~~~Pas 227 (259)
T TIGR00502 160 KTLTEDTIQANSRFFEGDVNQVPKYALTVGIGTILDSKEVLILVSGHQKALALQKAVEGGVNHMWTIS 227 (259)
T ss_pred EEcchhhHHHHhhhhcCCCCCCCCceEecCHHHHhhCCEEEEEEcCHHHHHHHHHHHcCCCCCccchH
Confidence 8888887766667776556777899999999999999999999 99999999999999874 578973
No 4
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-55 Score=366.17 Aligned_cols=206 Identities=38% Similarity=0.587 Sum_probs=184.3
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc--cch
Q psy10371 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG--RNF 78 (219)
Q Consensus 1 m~i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v--~~~ 78 (219)
|+++++++++++++.+++.|.+.+.+++++ +|+++|+||||+||+.+|+.|++..+ .++||++|++||+|||+ ++|
T Consensus 1 m~~~~~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~l~LsgGsTP~~~ye~L~~~~~-~~~~w~~v~~f~~DEr~vp~~~ 78 (238)
T COG0363 1 MKLIIFEDAEELAKAAAEIIADKLQAAKAE-RGRAVLALSGGSTPLALYEALVKLPQ-GQLDWSKVTIFNLDERVVPPDD 78 (238)
T ss_pred CceEEcCCHHHHHHHHHHHHHHHHHhhhhc-cCcEEEEECCCCCHHHHHHHHHhhhc-cCCCchheEEEeccccccCCCC
Confidence 899999999999999999999999998887 89999999999999999999999776 78999999999999988 566
Q ss_pred --HHH-HHHHhcCCCCCCCCCCeEeCCCCCCCHHHHHH-HHHHHHHHhCCccEEEEeecCCCcccccCCCCC-CCCcceE
Q psy10371 79 --LTK-LFRHNFFSHIDIQPENVHILDGNAPDLHAECV-QYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSS-LASRTRL 153 (219)
Q Consensus 79 --~~~-~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~-~y~~~i~~~~~~Dl~lLG~G~DGHiaslfP~~~-~~~~~~~ 153 (219)
||+ +|+++||+++.++++++|.++++ +++++|. +|++.|.+.|+||++|||||+|||||||||+++ +.+.+
T Consensus 79 ~~Sn~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~e~~~~ye~~i~~~~~~Dl~lLG~G~DGHias~fP~~~~l~~~~-- 154 (238)
T COG0363 79 PESNYGLMRRNLFDHIDIPAEFIHNGDAS--DPDAECAARYEAKLPSAGGFDLILLGMGEDGHIASLFPGTPALDSAT-- 154 (238)
T ss_pred chhHHHHHHHHHhccccCcHhhcCCCCcc--ChhHHHHHHHHhhccccCCCCEEEEcccCCCcccccCCCCccccccc--
Confidence 776 68999999999999998888765 5555777 999999999999999999999999999999998 65543
Q ss_pred EECchhhHHHhhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCCCC-CCCC
Q psy10371 154 KTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPRTN-IIPS 218 (219)
Q Consensus 154 v~l~~~t~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~~~-~~Pa 218 (219)
|...+.+++..+.+++|.+|||||+++|++||+|+|+ +|+.|+++++++++++.+ .+|+
T Consensus 155 ------~~~~~~~~~~~~~~~~P~~riTlt~~~I~~Ak~v~llv~G~~Ka~al~~~l~~~~~~~~Pa 215 (238)
T COG0363 155 ------TEEANSRVFVGDSPKVPKERITLTLPTILDAKEVLLLVTGEEKADALKQALEGPVTELYPA 215 (238)
T ss_pred ------chhhceeeecCCCCCCCcceEEeCHHHHhcCCeEEEEEcCchHHHHHHHHhcCCCcccccH
Confidence 2334455666678899999999999999999999999 999999999999999864 4786
No 5
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=100.00 E-value=8.2e-55 Score=362.45 Aligned_cols=198 Identities=22% Similarity=0.340 Sum_probs=174.3
Q ss_pred EeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc--cch--HH
Q psy10371 5 ILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG--RNF--LT 80 (219)
Q Consensus 5 v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v--~~~--~~ 80 (219)
+|+|++++++.+|++|.+.+++++++ +++++|+||||+||+.+|+.|++ .++||+||+||++|||+ ++| ||
T Consensus 1 v~~~~~~l~~~~a~~i~~~i~~~i~~-~~~~~lalsGGstp~~~y~~L~~----~~i~w~~v~~f~~DER~Vp~~~~~SN 75 (233)
T TIGR01198 1 VFSNSAELAEALAERIATKLQTALAE-RGQFSLALSGGRSPIALLEALAA----QPLDWSRIHLFLGDERYVPLDHADSN 75 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEECCCccHHHHHHHHhh----CCCCcceEEEEEecccccCCCCccch
Confidence 58999999999999999999998886 88999999999999999999997 48999999999999976 676 88
Q ss_pred H-HHHHhcCCCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHHhCC------ccEEEEeecCCCcccccCCCCC-CCCcce
Q psy10371 81 K-LFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGG------IHLFVGGIGPDGHIAFNEPGSS-LASRTR 152 (219)
Q Consensus 81 ~-~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~~------~Dl~lLG~G~DGHiaslfP~~~-~~~~~~ 152 (219)
+ +++++||+++++|++|+|++++...+++++|++|++.|++.++ ||++|||||+||||||||||++ +.+.++
T Consensus 76 ~~~~~~~Ll~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~~~~~~~~p~fDl~lLGmG~DGHtASlFPg~~~l~~~~~ 155 (233)
T TIGR01198 76 TGLAREALLDRVAIPASNIHPMPTELSDIEEAAELYEQELAAAFQPIVFPVFDLLLLGMGPDGHTASLFPHTPALQETER 155 (233)
T ss_pred HHHHHHHHhccCCCChhheeeCCCccCCHHHHHHHHHHHHHHhhcccCCCcccEEEECCcCCccceeCCCCChhhccccc
Confidence 7 5699999999999999999997654799999999999988753 7999999999999999999987 444454
Q ss_pred EEECchhhHHHhhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhC-CCC-CCCCCC
Q psy10371 153 LKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAV-PRT-NIIPSG 219 (219)
Q Consensus 153 ~v~l~~~t~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~-~~~-~~~Pa~ 219 (219)
++... .+++++|++|||||+++|++||+|+|+ +|++|+++++++++ ++. ..+||.
T Consensus 156 ~~~~~------------~~~~~~p~~RITlt~~~i~~a~~i~~lv~G~~Ka~~~~~~l~~~~~~~~~Pas 213 (233)
T TIGR01198 156 LVTVL------------TKSPKPPHERITLTLPAINAARKVFLLIAGEEKRNALAEALAVEAEPYPLPAA 213 (233)
T ss_pred eEEee------------cCCCCCCCCcEEecHHHHhcCCeEEEEEEChHHHHHHHHHHhcCCCcccCCHh
Confidence 43321 246888999999999999999999999 99999999999998 444 468874
No 6
>PLN02360 probable 6-phosphogluconolactonase
Probab=100.00 E-value=3.5e-53 Score=359.30 Aligned_cols=204 Identities=19% Similarity=0.265 Sum_probs=174.7
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc--cch
Q psy10371 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG--RNF 78 (219)
Q Consensus 1 m~i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v--~~~ 78 (219)
|++++|+|++++++.+|+.|.+.+++++++ +++++|+|||||+| .+|..|++.....++||+||+|||+|||+ ++|
T Consensus 11 ~~l~i~~~~~el~~~~a~~i~~~~~~a~~~-~~~~~lalsGGS~~-~~~~~L~~~~~~~~idW~~v~~f~~DER~Vp~~~ 88 (268)
T PLN02360 11 GEIRVHENLDELSTDLAEYIAELSEASVKE-RGVFAIALSGGSLI-SFMGKLCEAPYNKTVDWAKWYIFWADERVVAKNH 88 (268)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEECCCCHH-HHHHHHhccccccCCCCceEEEEeeecccCCCCC
Confidence 589999999999999999999999988776 88999999999965 58888887655568999999999999976 666
Q ss_pred --HHH-HHHHhcCCCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHH--------------hCCccEEEEeecCCCccccc
Q psy10371 79 --LTK-LFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKE--------------AGGIHLFVGGIGPDGHIAFN 141 (219)
Q Consensus 79 --~~~-~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~--------------~~~~Dl~lLG~G~DGHiasl 141 (219)
||+ ++++.||+++++|++|+|.+++.. +++++|++|+++|++ .++||++|||||+|||||||
T Consensus 89 ~~SN~~~~r~~Ll~~~~i~~~~i~~~~~~~-~~~~~a~~ye~~l~~~~~~~~~~~~~~~~~p~fDlvlLGmG~DGHtASl 167 (268)
T PLN02360 89 ADSNYKLAKDGLLSKVPVVPSHVYSINDTV-TAEEAATDYEFAIRQLVKTRTIGVSDISDCPKFDLILLGMGSDGHVASL 167 (268)
T ss_pred cchHHHHHHHHhhccCCCChhhcccCCCCC-CHHHHHHHHHHHHHHHhhccccccccccCCCcccEEEEccCCCCceecc
Confidence 887 469999999999999999999865 689999999999977 34799999999999999999
Q ss_pred CCCCC-CCCcceEEECchhhHHHhhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhC----CCC-C
Q psy10371 142 EPGSS-LASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAV----PRT-N 214 (219)
Q Consensus 142 fP~~~-~~~~~~~v~l~~~t~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~----~~~-~ 214 (219)
|||++ +.+...++.. + .+.+++|++|||||+++|++||+|+|+ +|++|++++++++. ++. .
T Consensus 168 FPg~~~l~~~~~~v~~-----------~-~~~~~~p~~RITlt~~~i~~A~~i~llv~G~~Ka~al~~~l~~~~~~~~~~ 235 (268)
T PLN02360 168 FPNHPALEEKDDWVTF-----------I-TDSPKPPPERITFTLPVINSASNVAVVATGESKANAVHLAIDDVTEGPDAP 235 (268)
T ss_pred CCCCchhhhccceEEe-----------e-cCCCCCCCceEEEcHHHHhcCCeEEEEEeCccHHHHHHHHHhhccCCCCcc
Confidence 99987 4443333321 1 145788899999999999999999999 99999999999995 442 5
Q ss_pred CCCCC
Q psy10371 215 IIPSG 219 (219)
Q Consensus 215 ~~Pa~ 219 (219)
.+||+
T Consensus 236 ~~Pas 240 (268)
T PLN02360 236 SLPAR 240 (268)
T ss_pred cCChh
Confidence 68874
No 7
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=100.00 E-value=1.5e-52 Score=346.06 Aligned_cols=193 Identities=24% Similarity=0.339 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc--cch--HHH-HHH
Q psy10371 10 SNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG--RNF--LTK-LFR 84 (219)
Q Consensus 10 ~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v--~~~--~~~-~~~ 84 (219)
+++++.+|+.|++.+++++++ +++++|+||||+||+.+|+.|++.. ++||++|+||++|||+ .+| ||+ +++
T Consensus 1 ~~l~~~~a~~i~~~i~~~i~~-~~~~~l~lsGGstp~~~y~~L~~~~---~i~w~~v~~f~~DEr~Vp~~~~~Sn~~~~~ 76 (219)
T cd01400 1 EALAEALADRIAEALAAAIAK-RGRFSLALSGGSTPKPLYELLAAAP---ALDWSKVHVFLGDERCVPPDDPDSNYRLAR 76 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHHh-cCeEEEEECCCccHHHHHHHhcccc---CCCCceEEEEEeeccccCCCCcccHHHHHH
Confidence 368899999999999998886 8899999999999999999999842 5999999999999976 666 777 579
Q ss_pred HhcCCCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHH----hCCccEEEEeecCCCcccccCCCCCCC--CcceEEECch
Q psy10371 85 HNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKE----AGGIHLFVGGIGPDGHIAFNEPGSSLA--SRTRLKTLAQ 158 (219)
Q Consensus 85 ~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~----~~~~Dl~lLG~G~DGHiaslfP~~~~~--~~~~~v~l~~ 158 (219)
++||++++++++|+|++++.. +++++|++|++.|++ .++||+++||||+|||||||||+++.. +.++++...
T Consensus 77 ~~ll~~~~~~~~~v~~~~~~~-~~~~~a~~y~~~i~~~~~~~~~~Dl~lLGmG~DGH~ASlfP~~~~~~~~~~~~v~~~- 154 (219)
T cd01400 77 EALLSHVAIPAANIHPIPTEL-GPEDAAAAYEKELRALFGGVPPFDLVLLGMGPDGHTASLFPGHPALLEETDRLVVAV- 154 (219)
T ss_pred HHhhccCCCCHhhEEeCCCCC-CHHHHHHHHHHHHHHHhcCCCCCCEEEECCcCCCceeecCCCCcccccccCceEEEE-
Confidence 999999999999999999874 699999999999998 589999999999999999999999864 555443311
Q ss_pred hhHHHhhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCCC-CCCCCC
Q psy10371 159 ETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPRT-NIIPSG 219 (219)
Q Consensus 159 ~t~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~~-~~~Pa~ 219 (219)
..++++|.+|||||+++|++||+|+|+ +|++|+++++++++++. .++|+.
T Consensus 155 -----------~~~~~~p~~RiTlt~~~i~~a~~i~ll~~G~~K~~~l~~~l~~~~~~~~Pas 206 (219)
T cd01400 155 -----------TDSPKPPPERITLTLPVLNNARRVVFLVTGAEKAEALKRALAGPDPEELPAA 206 (219)
T ss_pred -----------eCCCCCCCccEEecHHHHhcCCeEEEEEeChhHHHHHHHHHcCCCCCCCChh
Confidence 124568899999999999999999999 99999999999999874 679974
No 8
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=100.00 E-value=4.8e-52 Score=347.10 Aligned_cols=207 Identities=27% Similarity=0.409 Sum_probs=181.9
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeeccccc---c
Q psy10371 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYGR---N 77 (219)
Q Consensus 1 m~i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v~---~ 77 (219)
|+|++++|++++++.+|++|.+.|.+ +++++|+||||+||..+|+.|++.++ ..++|+||+||++||+.. +
T Consensus 1 m~i~i~~~~~e~~~~~a~~i~~~i~~-----~~~~~l~lsgG~tp~~~y~~L~~~~~-~~~~w~~v~~f~~DEv~~~~~~ 74 (239)
T PRK12358 1 MKIIITKDYEEMSRVAAHHLLGYMSK-----TKRVNLAITAGSTPKGMYEYLITLVK-GKAWYDNVHYYNFDEIPFRGKE 74 (239)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHh-----CCCeEEEECCCCCHHHHHHHHHHHHh-cCCCHHHcEEEeccccCCCCcc
Confidence 89999999999999999999999976 55799999999999999999998765 455799999999999432 3
Q ss_pred h--HHH-HHHHhcCCCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEeecCCCcccccCCCCC-CCCcceE
Q psy10371 78 F--LTK-LFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSS-LASRTRL 153 (219)
Q Consensus 78 ~--~~~-~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGHiaslfP~~~-~~~~~~~ 153 (219)
+ +|+ +++++||++++||++|+|++++ ++|.+|++.|++.|+||++|||||+||||||||||++ +.+.+++
T Consensus 75 ~~~s~~~~~~~~l~~~~~i~~~~~~~~~~------~~~~~y~~~i~~~~~~Dl~lLG~G~DGH~As~fPg~~~~~~~~~~ 148 (239)
T PRK12358 75 GEGVTITNLRNLFFTPAGIKEENIHKLTI------DNYREHDQKLARDGGLDLVVLGLGADGHFCGNLPGTTHFHDETVE 148 (239)
T ss_pred ccccHHHHHHHHhcCcCCCCHHHeeCCCH------HHHHHHHHHHHhcCCCCEEEEccCCCCceeecCCCCCcCCCceEE
Confidence 3 555 6799999999999999999984 3589999999999999999999999999999999975 7777899
Q ss_pred EECchhhHHHh-hcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCCC-CCCCCC
Q psy10371 154 KTLAQETLEAN-ARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPRT-NIIPSG 219 (219)
Q Consensus 154 v~l~~~t~~~~-~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~~-~~~Pa~ 219 (219)
+.+++.|+.++ .+.|..+.+++|++|||||++.|++||+|+|+ +|++|+++++++++++. .++||.
T Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~P~~riTlt~~~i~~A~~i~ll~~G~~Ka~~l~~~l~~~~~~~~Pas 217 (239)
T PRK12358 149 VPIQGEMVDIVAHGELGGDFSLVPDSYVTMGPKSIMAAKNLLLIVNGKGKAQILKKVLQGPVTEDVPAS 217 (239)
T ss_pred EECcHHHHHHhhhhhccCCcccCCCeeEEcchHHHHhCCEEEEEEeCHHHHHHHHHHHcCCCCCCcCcH
Confidence 99998887654 24454457889999999999999999999999 99999999999999874 578973
No 9
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=100.00 E-value=1e-52 Score=342.27 Aligned_cols=184 Identities=27% Similarity=0.437 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc--cch--HHH-HHHHh
Q psy10371 12 VAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG--RNF--LTK-LFRHN 86 (219)
Q Consensus 12 ~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v--~~~--~~~-~~~~~ 86 (219)
|++++|+++.+.|.+.+++ +++++||||||+||+.+|+.|++..+ .+++|++|+||++|||+ ++| ||+ +|+++
T Consensus 1 la~~~a~~i~~~i~~~i~~-~~~~~i~LsgGstp~~~y~~L~~~~~-~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~ 78 (199)
T PF01182_consen 1 LAQAVAEAIAEAIEEAIAE-RGRAVIALSGGSTPKPLYQELAKLHK-ERIDWSRVHFFNVDERVVPPDDPDSNYRMLREH 78 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CSSEEEEE--SCTHHHHHHHHHHHHH-TCSCGGGEEEEESEEESSTTTSTTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHhhhcc-ccCChhHeEEEeCcccccCCCCCccHHHHHHHH
Confidence 4566667777766666654 78899999999999999999999876 68999999999999977 666 666 67999
Q ss_pred cCCCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHHhCC------ccEEEEeecCCCcccccCCCCCCCC---cceEEECc
Q psy10371 87 FFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGG------IHLFVGGIGPDGHIAFNEPGSSLAS---RTRLKTLA 157 (219)
Q Consensus 87 l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~~------~Dl~lLG~G~DGHiaslfP~~~~~~---~~~~v~l~ 157 (219)
||++++||++|+|++++...+++++|++|++.|.+.++ ||+++||||+||||||||||++... ....+.+
T Consensus 79 l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~p~~Dl~lLG~G~DGH~aslfPg~~~~~~~~~~~~~~~- 157 (199)
T PF01182_consen 79 LLDPLPIPPENIHPIDGEADDPEEAAERYEQELASLGGEAGFPGFDLVLLGMGEDGHTASLFPGSPALLEESERWVVAV- 157 (199)
T ss_dssp TGGGSGGGGGGEETSSTTTSSHHHHHHHHHHHHHHHSSSEECESBSEEEEE--TTS-BTTB-TTCHTTHHHHSSSSEEE-
T ss_pred hhccCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHhccccCCCceeEEEeccccCCCeeccCCCCccccccccceEEEe-
Confidence 99999999999999998778999999999999999875 9999999999999999999987532 1122221
Q ss_pred hhhHHHhhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhC
Q psy10371 158 QETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAV 210 (219)
Q Consensus 158 ~~t~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~ 210 (219)
.+++++|++|||||+++|++||+|+|+ +|++|+++++++|+
T Consensus 158 ------------~~~~~~p~~riTlt~~~i~~a~~i~~l~~G~~Ka~~v~~~l~ 199 (199)
T PF01182_consen 158 ------------TDSPKPPPQRITLTLPTIMSARKIVLLATGEEKAEAVKRALQ 199 (199)
T ss_dssp ------------ECCTTSSSEEEEE-HHHHHTSSEEEEEEESGGGHHHHHHHH-
T ss_pred ------------cCCCCCCcceEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHhC
Confidence 146889999999999999999999999 99999999999985
No 10
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=100.00 E-value=5.1e-52 Score=386.80 Aligned_cols=217 Identities=36% Similarity=0.608 Sum_probs=198.9
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc---cc
Q psy10371 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG---RN 77 (219)
Q Consensus 1 m~i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v---~~ 77 (219)
|++++|+|.+++++.+|+.|++.|++++.+ ++.++|+||||+||+.+|+.|++.++...++|++|++|++|||+ ++
T Consensus 28 i~~~if~~~ee~a~~vA~~I~~~I~~~~~~-~~~~~laLsGGsTP~~~Y~~L~~~~~~~~l~w~~V~~F~~DEr~~vp~d 106 (652)
T PRK02122 28 IPTDIFESSEEASRAVAQEIATLIRERQAE-GKPCVLGLATGSSPIGVYAELIRMHREEGLSFKNVITFNLDEYYPMQPD 106 (652)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEEcCCcCHHHHHHHHHhhhhccCCCchheEEEeCeeccCCCCC
Confidence 678999999999999999999999998876 88999999999999999999999888889999999999999965 56
Q ss_pred h--HHH-HHHHhcCCCCCCCCCCeEeCCCCC--CCHHHHHHHHHHHHHHhCCccEEEEeecCCCcccccCCCCCCCCcce
Q psy10371 78 F--LTK-LFRHNFFSHIDIQPENVHILDGNA--PDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTR 152 (219)
Q Consensus 78 ~--~~~-~~~~~l~~~~~i~~~~i~~~~~~~--~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGHiaslfP~~~~~~~~~ 152 (219)
| ||+ +|+++||++++||++|+|.+++.. .+++++|++|++.|++.|+||++|||||+||||||||||+++.+.++
T Consensus 107 ~~~Sn~~~~re~L~~~i~Ip~~ni~~~dg~~~~~~~~~~~~~Ye~~I~~~gg~DlvLLGiG~DGHiAsnfPgs~~~s~tr 186 (652)
T PRK02122 107 SLQSYHRFMKENLFDHVDIPPENIHIPDGTIPKEEIDEYCRDYEEKIEAAGGIDFQLLGIGRTGHIGFNEPGSGRNSRTR 186 (652)
T ss_pred cHHHHHHHHHHHhhccCCCCHHHeecCCCccCcCCHHHHHHHHHHHHHhhCCCcEEEeCCCCCCceeccCCCCcccccce
Confidence 6 776 689999999999999999998752 47899999999999999999999999999999999999999888899
Q ss_pred EEECchhhHHHhhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCCC-CCCCCC
Q psy10371 153 LKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPRT-NIIPSG 219 (219)
Q Consensus 153 ~v~l~~~t~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~~-~~~Pa~ 219 (219)
++.++..|+..++..|. ..+++|++|||||+++|++||+|+|+ +|++|+++++++++++. +.+||.
T Consensus 187 ~v~l~~~tr~~aa~~f~-~~~~~P~~rITmgi~~I~~Ar~Iilla~G~~Ka~iv~~~l~g~~~~~~PAs 254 (652)
T PRK02122 187 LVTLDHITRRDAASDFF-GEENVPRKAITMGVGTILKARRIVLLAWGEHKAPIIKRAVEGEISDEVPAS 254 (652)
T ss_pred EEEccchhhhhhccccC-CCCCCCCceEEeCHHHHHhhCeEEEEEeCHHHHHHHHHHHhCCCCCccchH
Confidence 99999999877766565 36888999999999999999999999 99999999999999874 678873
No 11
>KOG3147|consensus
Probab=100.00 E-value=8.5e-51 Score=330.62 Aligned_cols=205 Identities=22% Similarity=0.282 Sum_probs=182.0
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc--cch
Q psy10371 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG--RNF 78 (219)
Q Consensus 1 m~i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v--~~~ 78 (219)
+++.+|.+.+++...+++++.+....++.+ +|+|+|+|||||.+..|++.|...+ ...++|++|++|++|||+ .+|
T Consensus 9 ~~~~v~~~~~el~~~l~~~~~~~s~~~~~~-~g~F~i~lSGGSLi~~L~~~l~~~~-~~~i~w~kW~if~~DER~Vp~~~ 86 (252)
T KOG3147|consen 9 VKVIVFSSEEELIEALAGYIAEKSEKALKK-RGRFTLALSGGSLIQVLSKLLESPY-QDDIDWSKWHIFFVDERVVPLDD 86 (252)
T ss_pred ceeeecccHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEEcCCcHHHHHHHHhcccc-cCCCCccceEEEEEeccccCCCC
Confidence 357899999999999999999999999986 9999999999999999999999753 368999999999999988 455
Q ss_pred --HHHH-HHHhcCCCCCCCCCCeEeCCCCC-CCHHHHHHHHHHHHHHh-CC-----ccEEEEeecCCCcccccCCCCC-C
Q psy10371 79 --LTKL-FRHNFFSHIDIQPENVHILDGNA-PDLHAECVQYEKDIKEA-GG-----IHLFVGGIGPDGHIAFNEPGSS-L 147 (219)
Q Consensus 79 --~~~~-~~~~l~~~~~i~~~~i~~~~~~~-~~~~~~~~~y~~~i~~~-~~-----~Dl~lLG~G~DGHiaslfP~~~-~ 147 (219)
|||. .+++||++++++..|||+++... .+++++|+.|++.|++. .+ |||+|||||+|||||||||++. +
T Consensus 87 ~dSNyg~~~~~~l~~v~~~~~~i~~id~~L~~~~~~~a~~ye~~l~~~v~~~s~p~FDL~LLG~GpDGHtaSLFP~~~~l 166 (252)
T KOG3147|consen 87 PDSNYGLAKRHFLSKVPIPHYNIYPIDESLIADAEEAADLYEKELKALVANDSFPVFDLLLLGMGPDGHTASLFPGHPLL 166 (252)
T ss_pred CcccHHHHHHhhhhhCCCCcCcEEECChhhccCHHHHHHHHHHHHHHHhccCCCcceeEEEeccCCCCCeeecCCCchhh
Confidence 8885 59999999999999999999875 37999999999999774 24 9999999999999999999964 5
Q ss_pred CCcceEEECchhhHHHhhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCCCCCCCCC
Q psy10371 148 ASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPRTNIIPSG 219 (219)
Q Consensus 148 ~~~~~~v~l~~~t~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~~~~~Pa~ 219 (219)
.+...+|.. .+++|++|+.|||+|+++|++|+++.|+ +|+.||++++.++......+|++
T Consensus 167 ~e~~~wV~~------------itdSPkpPp~RITlTLPvIn~A~~v~fvv~G~~Ka~iv~~i~~~~~~~lPaa 227 (252)
T KOG3147|consen 167 NEKLKWVVP------------ITDSPKPPPKRITLTLPVINHAKNVAFVVCGASKAEIVKAILEDKEKKLPAA 227 (252)
T ss_pred hcccCEEEE------------eCCCCCCCCccEEEehHHhhhhhceEEEEeCcchhHhHHHHHhcccccCCch
Confidence 566666542 1379999999999999999999999999 99999999999999887779975
No 12
>KOG3148|consensus
Probab=100.00 E-value=2.8e-50 Score=315.26 Aligned_cols=213 Identities=65% Similarity=1.084 Sum_probs=205.1
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc---cc
Q psy10371 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG---RN 77 (219)
Q Consensus 1 m~i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v---~~ 77 (219)
|++++.++++.+++++|+++...|.+..+..++.++++|++||||..+|+.|++.++++.++|+.|..|++|||| +|
T Consensus 1 mkliile~~d~~~ewaakyv~~ri~~f~p~~dkyf~lglptgstplg~ykklie~~k~g~~sf~yvktfnmdeyvglprd 80 (273)
T KOG3148|consen 1 MKLIILENYDKVSEWAAKYVVNRINQFTPGGDKYFVLGLPTGSTPLGMYKKLIEFYKNGVLSFKYVKTFNMDEYVGLPRD 80 (273)
T ss_pred CcEEEeechhHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCCCchhHHHHHHHHHhcCceEEEEEeeecchhhcCCCCC
Confidence 899999999999999999999999999887668999999999999999999999999999999999999999999 56
Q ss_pred h---HHHHHHHhcCCCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEeecCCCcccccCCCCCCCCcceEE
Q psy10371 78 F---LTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLK 154 (219)
Q Consensus 78 ~---~~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGHiaslfP~~~~~~~~~~v 154 (219)
| +.++|..+||++++|.|+|+|.+++.+.|.+.+|.+||++|++.||+||.+.|||+|||||+|+||+++.+.||+.
T Consensus 81 h~esyhsfmwnnffkhidi~p~n~hildgna~dl~aec~~fe~kikeaggidlfvggigpdghiafnepgsslvsrtrvk 160 (273)
T KOG3148|consen 81 HPESYHSFMWNNFFKHIDINPANIHILDGNAADLQAECDAFERKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRVK 160 (273)
T ss_pred ChhHHHHHHHHhhhhhcccCcccceeecCchHHHHHHHHHHHHHHHhcCCeEEEeeccCCCCceeeCCCcchhhhhhhHH
Confidence 6 5668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECchhhHHHhhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCCC
Q psy10371 155 TLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPRT 213 (219)
Q Consensus 155 ~l~~~t~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~~ 213 (219)
++..+|+.+|+++|+++..++|.+.+|+|..+.|.||+|.++ ||+.|+-++.++++...
T Consensus 161 tla~dti~anarffdgd~tkvpt~altvgvgtvmdarevmilitgahkafalykaieegv 220 (273)
T KOG3148|consen 161 TLAMDTILANARFFDGDLTKVPTQALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV 220 (273)
T ss_pred HHhHHHHHhhceecCCccccCccceeEeeeeeeeecceEEEEEeccHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999 99999999999998654
No 13
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=100.00 E-value=1.3e-44 Score=305.79 Aligned_cols=218 Identities=52% Similarity=0.877 Sum_probs=193.4
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHhhCCCCCC-ceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc---c
Q psy10371 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDN-YFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG---R 76 (219)
Q Consensus 1 m~i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~-~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v---~ 76 (219)
|++++|+|.+++++.+|++|.+.+++++++ ++ ..+||||||+||..+|+.|.+.++...++|++|+||++|||+ .
T Consensus 1 m~~~~~~~~~~l~~~aa~~l~~~l~~~~~~-~~~~~~iglsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~~DEr~gv~~ 79 (261)
T PRK00443 1 MRLIILKTAEEVGKWAARHIANRINAFLPT-KERPFVLGLATGSSPLETYKALIELHKAGKVDFSRVTTFNLDEYVGLPA 79 (261)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEecCCCCHHHHHHHHHHHhhhcCCchHHeEEEeCceecCCCC
Confidence 899999999999999999999999988876 54 567889999999999999998777788999999999999984 4
Q ss_pred ch--HHH-HHHHhcCCCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEeecCCCcccccCCCCCCCCcceE
Q psy10371 77 NF--LTK-LFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRL 153 (219)
Q Consensus 77 ~~--~~~-~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGHiaslfP~~~~~~~~~~ 153 (219)
+| +|+ ++++.|+++++++..++|++++...++.+++..|++.|+..+++|++|||||+|||+|||||++.+.+..++
T Consensus 80 ~~~~s~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Dl~llGiG~dgh~aslfp~~~~~~~~~~ 159 (261)
T PRK00443 80 DHPESYRYFMRENFFDHVDIPPENINLLNGNAPDPEAECRRYEEKIKSAGGIDLQILGIGENGHIAFNEPGSSFASRTRI 159 (261)
T ss_pred CChHHHHHHHHHHHhccCCCCHHHeecCCCCCcCHHHHHHHHHHHHHHcCCCCEEEEccCCCCcccccCCCCCCCCCeEE
Confidence 44 665 579999999999999999998766688899999999999999999999999999999999999887777788
Q ss_pred EECchhhHHHhhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCCC-CCCCCC
Q psy10371 154 KTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPRT-NIIPSG 219 (219)
Q Consensus 154 v~l~~~t~~~~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~~-~~~Pa~ 219 (219)
+.+...+...+.++|..+.+.+|.+|||||++.|++|++++++ +|++|+++++.++.++. +.+|+.
T Consensus 160 ~~l~~~~~~~~~~~~d~~g~~~~~~~itl~l~~L~~a~~vi~~a~G~~K~~ai~~al~~~~~~~~Pa~ 227 (261)
T PRK00443 160 KTLTEDTRIANSRFFDGDIEQVPKYALTVGVGTILDAKEIMLLAPGHNKAEAVKAAVEGPVNHMWPAS 227 (261)
T ss_pred EEccHhhHHHHHhhcCCCccCCCCeeEEcCHHHHHhcCeEEEEecChHHHHHHHHHHhCCCCCCcchH
Confidence 8888766655666776555778899999999999999999999 99999999999999874 678873
No 14
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=100.00 E-value=2.7e-41 Score=280.51 Aligned_cols=203 Identities=49% Similarity=0.787 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeeccc--c-cch--HHH-HH
Q psy10371 10 SNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEY--G-RNF--LTK-LF 83 (219)
Q Consensus 10 ~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~--v-~~~--~~~-~~ 83 (219)
+++++.+|+++.+.|++ ++.++|+||||+||..+|+.|....+..+++|++|+||++||| + .+| +|+ .+
T Consensus 1 ~~~~~~~a~~l~~~i~~-----~~~~~i~lsgG~T~~~~~~~l~~~~~~~~~~~~~v~v~~~der~~v~~~~~~sn~~~~ 75 (232)
T cd01399 1 EEMSEAAAELIAELIRE-----KPPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLDEYVGLPPDHPQSYHYFM 75 (232)
T ss_pred ChHHHHHHHHHHHHHHh-----CCCcEEEEcCCCCHHHHHHHHHHHHHhcCCcHHHeEEEeCceecCCCCCcchhHHHHH
Confidence 36888999999998876 4569999999999999999999876677899999999999998 6 555 666 57
Q ss_pred HHhcCCCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEeecCCCcccccCCCCCCCCcceEEECchhhHHH
Q psy10371 84 RHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEA 163 (219)
Q Consensus 84 ~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGHiaslfP~~~~~~~~~~v~l~~~t~~~ 163 (219)
++.|+++++++..|+|+++++..++.+++..|++.|++.+++|+++||||+|||+|||||++.+...++.+.+...+...
T Consensus 76 ~~~l~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~l~~~~~~Dl~llGiG~dgh~as~~p~~~~~~~~~~~~l~~~~~~~ 155 (232)
T cd01399 76 RENLFDHIDIKPENIHIPDGNAADLEAECRRYEALIAEAGGIDLQLLGIGENGHIGFNEPGSSLDSRTRVVTLDESTRQA 155 (232)
T ss_pred HHHhhccCCCCHHHEecCCCCccCHHHHHHHHHHHHHHcCCCCEEEECCCCCceeeecCCCCCCCCceEEEECCHHhHHH
Confidence 99999999999999999987666788999999999999999999999999999999999998876667777787666555
Q ss_pred hhcccCCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCCC-CCCCC
Q psy10371 164 NARFFDNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPRT-NIIPS 218 (219)
Q Consensus 164 ~~~~~~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~~-~~~Pa 218 (219)
+.++|..+ +.+|.+|||||++.|++|++++++ +|++|+++++.++.+.. ..+|+
T Consensus 156 ~~~~~~~~-~~~~~~~itltl~~l~~a~~vi~~a~G~~K~~ai~~al~~~~~~~~P~ 211 (232)
T cd01399 156 NARFFDGD-EDVPTQAITMGIGTIMKAKEILLLATGEGKAEAVKKALEGPVTEECPA 211 (232)
T ss_pred HhhhcCCc-CCCCCceEecCHHHHhhCCEEEEEeCChHHHHHHHHHHhCCCCCCcch
Confidence 55566543 677899999999999999999999 99999999999999874 57886
No 15
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=100.00 E-value=1.1e-33 Score=224.80 Aligned_cols=149 Identities=23% Similarity=0.193 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc--cch--HHH-HHHHhcC
Q psy10371 14 EWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG--RNF--LTK-LFRHNFF 88 (219)
Q Consensus 14 ~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v--~~~--~~~-~~~~~l~ 88 (219)
+.+|.++.+.+++++.+ ++.++|+||||+||..+|+.|++..... +|++|+||++|||+ .+| ||+ +++++||
T Consensus 2 ~~~a~~i~~~i~~~~~~-~~~~~i~lsgGsTp~~~y~~L~~~~~~~--~w~~v~~f~~DEr~v~~~~~~Sn~~~~~~~ll 78 (169)
T cd00458 2 KEALKFIEDKXEKLLEE-KDDMVIGLGTGSTPAYFYKLLGEKLKRG--EISDIVGFPTDERYVPLDSDQSNFRQAKLLAF 78 (169)
T ss_pred hHHHHHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHhhhhhC--CccceEEEECccccCCCCCchHHHHHHHHHhh
Confidence 45667777777776654 7889999999999999999999876543 89999999999977 556 887 5699999
Q ss_pred CCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEeecCCCcccccCCCCCCCCcceEEECchhhHHHhhccc
Q psy10371 89 SHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF 168 (219)
Q Consensus 89 ~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGHiaslfP~~~~~~~~~~v~l~~~t~~~~~~~~ 168 (219)
+++++|++|+|+++++..+.+++|+.|++.++..++||++|||||
T Consensus 79 ~~~~i~~~~v~~~~~~~~~~~~a~~y~~~~~~~~~~~Dl~lLG~G----------------------------------- 123 (169)
T cd00458 79 EHDIIPASNVHYVDTSLPIEKACEKYEREILDQVDAIDLAVDGAG----------------------------------- 123 (169)
T ss_pred ccCCCCHHHeecCCCCCCcHHHHHHHHHHHHhhCCCCCEEEECcC-----------------------------------
Confidence 999999999999998764444444444456677789999999999
Q ss_pred CCCCCCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCCC-CCCCCC
Q psy10371 169 DNDIKKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPRT-NIIPSG 219 (219)
Q Consensus 169 ~~~~~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~~-~~~Pa~ 219 (219)
++||+++|+ +|++|++++++++++++ ..+||+
T Consensus 124 -------------------~~a~~i~~~~~G~~Ka~~l~~~~~~~~~~~~Pas 157 (169)
T cd00458 124 -------------------YRAGTVIVLVDGRKKVDYLCQNTEPGVIENGIFA 157 (169)
T ss_pred -------------------ccccEEEEEecChhHHHHHHHHhcCCCCCcCCHH
Confidence 789999999 99999999999999764 579973
No 16
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=97.17 E-value=0.00048 Score=58.21 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc-cc--h-HHH---H
Q psy10371 10 SNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG-RN--F-LTK---L 82 (219)
Q Consensus 10 ~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v-~~--~-~~~---~ 82 (219)
+.+++.+|+++.+.++. + -+|++++|+|-..+-+.|.. ....++.|+.+==-+ .+ . .|. .
T Consensus 36 ~~l~~~aA~~L~~~l~~-----~--~~iGv~wG~Tl~~~~~~l~~------~~~~~~~vV~l~Gg~~~~~~~~~~~i~~~ 102 (255)
T PF04198_consen 36 ESLGEAAAEYLSELLKD-----G--DVIGVGWGRTLYAVANHLPP------KSLPNVTVVPLIGGVGNSNSYQANEIARR 102 (255)
T ss_dssp HHHHHHHHHHHHHH--T-----T--EEEEE-TSHHHHHHHHTS--------SSSSCEEEEESBSBTTTSSGGSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-----C--CEEEEcchHHHHHHHHhcCc------cCCCCcEEEECCCCCCCCCCcCHHHHHHH
Confidence 35667777777776653 2 49999999875555554442 467789988865533 21 1 333 2
Q ss_pred HHHhcCCCCCCCCCCeEeCCCC--CCCHHHH-----HHHHHHHHHHhCCccEEEEeecCCCcccccCCCCCCCCc-----
Q psy10371 83 FRHNFFSHIDIQPENVHILDGN--APDLHAE-----CVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASR----- 150 (219)
Q Consensus 83 ~~~~l~~~~~i~~~~i~~~~~~--~~~~~~~-----~~~y~~~i~~~~~~Dl~lLG~G~DGHiaslfP~~~~~~~----- 150 (219)
+-+.| +- +.+++... .++++.. -..+.+.++.....|++++|+|.=...+.++...-+.+.
T Consensus 103 lA~~~----g~---~~~~l~aP~~~~s~~~~~~l~~~~~i~~~l~~~~~~dial~giG~~~~~~~~~~~~~~~~~~~~~l 175 (255)
T PF04198_consen 103 LAEKL----GG---KYYFLPAPAFVDSPELRDALLAEPSIREVLDLARKADIALVGIGSPSSDSTLYRSGYLSEEEIEEL 175 (255)
T ss_dssp HHHHH----TS---EEE---SBSB-SSHHHHHHHHTSHHHHHHHHHHCT-SEEEEEEEEHHHHHHHCHHTTSCHHHHHHH
T ss_pred HHHHh----CC---cEEEEeCCccCCCHHHHHHHHhChHHHHHHHHHHhCCEEEEecCCCCCcchHHHhCCCCHHHHHHH
Confidence 33443 21 23333221 2333331 123345555566899999999986665544422111110
Q ss_pred ---ceEEECchhhHHHhhcccCCCCCC----CCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCC
Q psy10371 151 ---TRLKTLAQETLEANARFFDNDIKK----VPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPR 212 (219)
Q Consensus 151 ---~~~v~l~~~t~~~~~~~~~~~~~~----~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~ 212 (219)
..+=.+ ..++|..+-.. ...+.|.+.+..|.+.+++|.+ .|.+|++++..+|.+.
T Consensus 176 ~~~gAVGdi-------~~~f~d~~G~~v~~~~~~r~igi~l~~L~~i~~~I~va~G~~K~~aI~aALr~g 238 (255)
T PF04198_consen 176 REKGAVGDI-------CGRFFDADGNIVDTPLNDRTIGISLEDLRKIPRVIAVAGGEEKAEAILAALRGG 238 (255)
T ss_dssp HHTTEEEEE-------TTEEEETTS-EEEHGGGGGBSB--HHHHHTSSEEEEEE-SGGGHHHHHHHHHTT
T ss_pred HHCCcEEEh-------hchhhcCCCCCccCcCcCceeecCHHHHhCCCcEEEEcCchhhHHHHHHHHhcC
Confidence 000000 11233211111 1246889999999999999999 9999999999999875
No 17
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=97.05 E-value=0.011 Score=51.56 Aligned_cols=179 Identities=14% Similarity=0.119 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc--cch-HHH-HHHHh
Q psy10371 11 NVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG--RNF-LTK-LFRHN 86 (219)
Q Consensus 11 ~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v--~~~-~~~-~~~~~ 86 (219)
++++.+|+++.+.|+. +. +||+++|.|-..+-+.|.. .+-+++.|+..==-+ .++ ++. .+-..
T Consensus 99 ~lg~aaA~~l~~~l~~------gd-vigV~wGrTv~a~~~~l~~------~~~~~~~vV~l~GG~~~~~~~~~~~~~~~~ 165 (321)
T COG2390 99 RLGRAAAQYLESLLKP------GD-VIGVGWGRTLSAVVDNLPP------APLRDVKVVQLTGGVGHADGSYNANTIALR 165 (321)
T ss_pred HHHHHHHHHHHHhCCC------CC-EEEEeccHHHHHHHHhcCc------CccCCeEEEECCCCCCCCccccCHHHHHHH
Confidence 3666666666666543 22 9999999987777666653 235677877754333 122 111 11222
Q ss_pred cCCCCCCCCCCeEeCCCCCCCHHHHHH-----HHHHHHHHhCCccEEEEeecCCCcccccCCCCCCCCcceEEECchhh-
Q psy10371 87 FFSHIDIQPENVHILDGNAPDLHAECV-----QYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQET- 160 (219)
Q Consensus 87 l~~~~~i~~~~i~~~~~~~~~~~~~~~-----~y~~~i~~~~~~Dl~lLG~G~DGHiaslfP~~~~~~~~~~v~l~~~t- 160 (219)
+-++++-....++. +.-.++++.... .+.+.+......|+++.|+|.=. |.+++... + .+..+.
T Consensus 166 ~A~k~~~~~~~l~a-P~~~~s~e~r~~l~~e~~v~~vl~~~~~ad~alvGIG~~~------~~~~~~~~-g--~~~~~~~ 235 (321)
T COG2390 166 LAEKLGAESYLLPA-PLVASSPELREALLQEPSVREVLDLARSADLALVGIGSLS------ANSTLVRS-G--FIYEEEL 235 (321)
T ss_pred HHHHhCCcEEeeec-CccCCCHHHHHHHHhCcHHHHHHHHHHhCCEEEEecCCCc------ccchhhhh-c--CCCHHHH
Confidence 22223322222222 222233332211 12233333346899999999633 22221000 0 000000
Q ss_pred --H-------HHhhcccCCC--C--CCCCCceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCC
Q psy10371 161 --L-------EANARFFDND--I--KKVPKEALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPR 212 (219)
Q Consensus 161 --~-------~~~~~~~~~~--~--~~~p~~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~ 212 (219)
. ....++|+.+ . ...-.+.|++.+..|-+++++|.+ -|+.|++++..+|.|.
T Consensus 236 ~~l~~~gaVGdi~g~ffD~~G~~~~~~ln~r~igl~L~~l~~ip~vI~vAgG~~K~~AI~aaL~gg 301 (321)
T COG2390 236 EALLAKGAVGDILGRFFDANGQPVDTPLNDRVIGLSLDDLRQIPKVIAVAGGESKAEAILAALRGG 301 (321)
T ss_pred HHHHhCCcceecccceecCCCCCccccccCceecCCHHHHhcCCcEEEEeCCcccHHHHHHHHhCC
Confidence 0 0112344321 1 111246899999999999999999 9999999999999976
No 18
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=96.14 E-value=0.043 Score=47.90 Aligned_cols=35 Identities=9% Similarity=-0.055 Sum_probs=32.5
Q ss_pred ceeeeCHHHHhccCeEEEE-cCCccHHHHhhhhCCC
Q psy10371 178 EALTVGVGTVMDAQEVRIC-YGFVDSYKLRKPAVPR 212 (219)
Q Consensus 178 ~riTlg~~~i~~a~~vi~~-~G~~Ka~~l~~~l~~~ 212 (219)
+.|.+++..|.+.+++|.+ .|.+|++++..++.+.
T Consensus 263 r~igi~le~Lk~ip~~I~vA~G~~K~~Ai~aALrgg 298 (318)
T PRK15418 263 ELIGLPLSSLKTIPTVIGVAGGEEKAEAIIAALKGG 298 (318)
T ss_pred ceecCCHHHHcCCCCEEEEecCHHHHHHHHHHHhcC
Confidence 4788899999999999999 9999999999999876
No 19
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=86.91 E-value=3.1 Score=32.86 Aligned_cols=93 Identities=12% Similarity=0.173 Sum_probs=47.5
Q ss_pred eEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc-cch-HHHHHHHhcCCCCCCCCCCeEeCCC---CCCCHH
Q psy10371 35 FVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG-RNF-LTKLFRHNFFSHIDIQPENVHILDG---NAPDLH 109 (219)
Q Consensus 35 ~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v-~~~-~~~~~~~~l~~~~~i~~~~i~~~~~---~~~~~~ 109 (219)
+.||+|||..-..+...|.+.... ..| ++..+.+|.-+ .++ .....-+.+.+.++||-. +..++. .....+
T Consensus 2 i~va~SGG~DS~~Ll~~l~~~~~~--~~~-~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~-~~~~~~~~~~~~~~e 77 (182)
T PF01171_consen 2 ILVAVSGGKDSMALLHLLKELRRR--NGI-KLIAVHVDHGLREESDEEAEFVEEICEQLGIPLY-IVRIDEDRKKGSNIE 77 (182)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTT--TTT-EEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEE-EEE--CHCCTTSTCH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHh--cCC-CeEEEEEecCCCcccchhHHHHHHHHHhcCCceE-EEEeeeeecccCCHH
Confidence 689999999888888888875433 344 89999999976 444 222222333344454322 233331 123455
Q ss_pred HHHH--HHHHH--HHHhCCccEEEEe
Q psy10371 110 AECV--QYEKD--IKEAGGIHLFVGG 131 (219)
Q Consensus 110 ~~~~--~y~~~--i~~~~~~Dl~lLG 131 (219)
+.|. +|+.. +...-+++.+++|
T Consensus 78 ~~aR~~Ry~~l~~~a~~~g~~~i~~G 103 (182)
T PF01171_consen 78 ECARELRYQFLREIAKEEGCNKIALG 103 (182)
T ss_dssp HHHHHHHHHHHHHHHHTTT-CEEE--
T ss_pred HHHHHHHHHHHHHhhhcccccceeec
Confidence 5554 44322 2222378888775
No 20
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=85.47 E-value=11 Score=32.05 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc-cc-h-HHHHHHHhcCCCCC
Q psy10371 16 SARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG-RN-F-LTKLFRHNFFSHID 92 (219)
Q Consensus 16 ~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v-~~-~-~~~~~~~~l~~~~~ 92 (219)
+-..+.+.+++..-- +.++.||||||..=..+...|.+.... -++..+.+|+-+ .. . .... -+.+-..++
T Consensus 6 ~~~~v~~~i~~~~~~-~~~ilVavSGGkDS~~ll~~L~~l~~~-----~~~~a~~Vd~~~~~~~~~~~~~-~~~~~~~~~ 78 (298)
T COG0037 6 LERKVKRAIREFNLI-EYKILVAVSGGKDSLALLHLLKELGRR-----IEVEAVHVDHGLRGYSDQEAEL-VEKLCEKLG 78 (298)
T ss_pred HHHHHHHHHHhcccc-CCeEEEEeCCChHHHHHHHHHHHhccC-----ceEEEEEecCCCCCccchHHHH-HHHHHHHhC
Confidence 334455555543221 357999999998888888888764221 477889999966 32 2 2222 233333334
Q ss_pred CCCCCeEeCCCCC-------CCHHHHHHHHHHH----HHHhCCccEEEEe
Q psy10371 93 IQPENVHILDGNA-------PDLHAECVQYEKD----IKEAGGIHLFVGG 131 (219)
Q Consensus 93 i~~~~i~~~~~~~-------~~~~~~~~~y~~~----i~~~~~~Dl~lLG 131 (219)
+ +-.+..+.... ..+...|...-.. .....++|.+++|
T Consensus 79 ~-~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tg 127 (298)
T COG0037 79 I-PLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATG 127 (298)
T ss_pred C-ceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEec
Confidence 3 22233222211 1356666544322 1222488999887
No 21
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=76.49 E-value=13 Score=30.47 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecc
Q psy10371 13 AEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDE 73 (219)
Q Consensus 13 ~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE 73 (219)
.+.+|+.|.+.+.+...+.+.+.+++++||.--..+|-.++-..... +-+++.-.+++|
T Consensus 99 n~~aa~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~~g~A~sL~gr--~qDrL~HVLV~e 157 (209)
T TIGR02584 99 NEAAANFIVQTVAPLCAAQDHQLHASIAGGRKTMGFYLGYALSLFGR--EQDRLSHVLVSE 157 (209)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCcHHHHHHHHHHHHHHhCC--ccceEEEEecCc
Confidence 46888999999998765446689999999998888888776533211 234555555555
No 22
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=73.69 E-value=37 Score=26.61 Aligned_cols=39 Identities=8% Similarity=0.197 Sum_probs=28.3
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 34 YFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 34 ~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
++.+++|||..-..+...|.+.... ..+ ++..+.+|...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~--~~~-~v~~v~vd~g~ 39 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK--LKI-RLIAAHVDHGL 39 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH--cCC-CEEEEEeCCCC
Confidence 3789999998877777777664322 233 48999999855
No 23
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=73.54 E-value=34 Score=26.61 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=27.2
Q ss_pred eEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 35 FVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 35 ~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
+.+++|||..-..+...+.+.... .+ .++..+.+|...
T Consensus 2 v~v~~SGG~DS~vl~~l~~~~~~~--~~-~~v~~v~id~~~ 39 (185)
T cd01992 2 ILVAVSGGPDSMALLHLLSELKPR--LG-LRLVAVHVDHGL 39 (185)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHH--cC-CcEEEEEecCCC
Confidence 789999998877777766654221 12 368999999855
No 24
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=70.35 E-value=22 Score=29.76 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhh--CCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 12 VAEWSARYVLKKITDF--KPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 12 ~~~~~a~~i~~~i~~~--~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
+.+.+-+.+.+.|++. ++. +.++.||+|||..=..+...|.+.-+...+++ ++..+.+|.-.
T Consensus 8 ~~~~~~~~v~~~i~~~~li~~-~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~-~l~av~vd~g~ 71 (258)
T PRK10696 8 LQKRLRRQVGQAIADFNMIEE-GDRVMVCLSGGKDSYTLLDILLNLQKRAPINF-ELVAVNLDQKQ 71 (258)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCe-EEEEEEecCCC
Confidence 4445555566666553 232 56899999999988888877766433222233 57777788744
No 25
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=64.00 E-value=74 Score=29.04 Aligned_cols=51 Identities=4% Similarity=0.058 Sum_probs=33.8
Q ss_pred HHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 22 KKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 22 ~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
..+.+.+.. +.++.||+|||..-..+...|.+.-. ....+ +++.+.+|.-.
T Consensus 6 ~~l~~~l~~-~~~ilvavSGG~DS~~Ll~~l~~~~~-~~~~~-~l~a~hvnhgl 56 (436)
T PRK10660 6 LTLNRQLLT-SRQILVAFSGGLDSTVLLHLLVQWRT-ENPGV-TLRAIHVHHGL 56 (436)
T ss_pred HHHHHhcCC-CCeEEEEecCCHHHHHHHHHHHHHHH-hcCCC-eEEEEEEeCCC
Confidence 334443443 66899999999888888888875321 11122 68889999855
No 26
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=62.79 E-value=44 Score=27.75 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 11 NVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 11 ~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
+=.+.+++.|.+.+++...+.+.+.++.++||.=-..+|-.++-..... ..+++.=.+++|.+
T Consensus 91 ~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~gr--~~Drl~HVlv~~~~ 153 (224)
T PF09623_consen 91 EDNEAFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFGR--PQDRLSHVLVNEEF 153 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcCC--ccceEEEEEeCccc
Confidence 4456788888888888666545789999999998888888876533211 35566655566643
No 27
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=61.44 E-value=44 Score=25.81 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=26.1
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeeccc
Q psy10371 34 YFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEY 74 (219)
Q Consensus 34 ~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~ 74 (219)
++.|++|||..=..+...+.+......+++ +++.+.+|--
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~-~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGF-ELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCe-EEEEEEEECC
Confidence 378999999887777777766422221233 4777888863
No 28
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=59.06 E-value=30 Score=25.99 Aligned_cols=46 Identities=7% Similarity=0.060 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCC--ceEEEecCCCCHHHHHHHHHHH
Q psy10371 8 DVSNVAEWSARYVLKKITDFKPGPDN--YFVLGLPTGGTPLGMYKKLIEY 55 (219)
Q Consensus 8 ~~~~~~~~~a~~i~~~i~~~~~~~~~--~~~i~lsgGstp~~~y~~L~~~ 55 (219)
+++|. +.+++.|.+.|++..++ .+ +.++.+|||.=-..+|-.++..
T Consensus 66 t~~d~-~~~~~~I~~~i~~l~~~-~~~~~lh~~iaGGRK~Ms~~~~~a~s 113 (124)
T TIGR03642 66 SDEDI-LTFMSIAAKEVKKEREN-YGCERIIVNISGGRKIMTIILALYAQ 113 (124)
T ss_pred CHHHH-HHHHHHHHHHHHHHhhC-CCcceEEEEecCCHHHHHHHHHHHHH
Confidence 34443 45566888999886554 44 6999999999888888877653
No 29
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=58.95 E-value=1.1e+02 Score=26.55 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=30.6
Q ss_pred HHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 21 LKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 21 ~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
.+.|++.+. ++++.+|+|||-.-.-+...+.+. +. .+++.+.+|.-.
T Consensus 7 ~~~l~~~v~--~~kVvValSGGVDSsvla~ll~~~-----~G-~~v~av~vd~G~ 53 (311)
T TIGR00884 7 VEEIREQVG--DAKVIIALSGGVDSSVAAVLAHRA-----IG-DRLTCVFVDHGL 53 (311)
T ss_pred HHHHHHHhC--CCcEEEEecCChHHHHHHHHHHHH-----hC-CCEEEEEEeCCC
Confidence 344444443 357999999997655555555442 12 378999999844
No 30
>PRK00074 guaA GMP synthase; Reviewed
Probab=55.47 E-value=1.2e+02 Score=28.20 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=33.1
Q ss_pred HHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 20 VLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 20 i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
..+.|++.+. ++++.+|+|||-.-.-+...+.+.. . .++..+.+|.-.
T Consensus 205 ~~~~l~~~v~--~~~vlva~SGGvDS~vll~ll~~~l-----g-~~v~av~vd~g~ 252 (511)
T PRK00074 205 AIEEIREQVG--DKKVILGLSGGVDSSVAAVLLHKAI-----G-DQLTCVFVDHGL 252 (511)
T ss_pred HHHHHHHhcC--CCcEEEEeCCCccHHHHHHHHHHHh-----C-CceEEEEEeCCC
Confidence 3444555443 4579999999988777777766532 2 368888999855
No 31
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=54.80 E-value=23 Score=30.28 Aligned_cols=64 Identities=13% Similarity=-0.012 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeeccc
Q psy10371 7 DDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEY 74 (219)
Q Consensus 7 ~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~ 74 (219)
.+.++..+.+...+.+.++++. .+.++++||||-.-.-......+.... ...-.++.-+.+...
T Consensus 3 ~d~~~~~~~~~~fl~~~l~~~~---~k~~VlGiSGGiDSa~~~~La~~A~~~-~~~~~~~~av~mP~~ 66 (268)
T COG0171 3 IDLEEEINRLVDFLRDYLKKAG---FKGVVLGLSGGIDSALVLALAVRALGK-GDSKENVLAVRLPYG 66 (268)
T ss_pred cCHHHHHHHHHHHHHHHHHHcC---CCCeEEEcccChHHHHHHHHHHHHhcc-ccchhheeeEECCCC
Confidence 3677888899999999998643 346999999996543333333332221 222355666666663
No 32
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=54.74 E-value=50 Score=27.79 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=57.1
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc---------------cc-----h--HHHHHHHhcCC
Q psy10371 32 DNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG---------------RN-----F--LTKLFRHNFFS 89 (219)
Q Consensus 32 ~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v---------------~~-----~--~~~~~~~~l~~ 89 (219)
++..++||+... ..+-.+..+..+...|++++-- +.-|.++ .+ . ...-+-..||+
T Consensus 96 ~~~~v~alT~~~--~~~~~~t~~~Lk~~gi~fs~~~-~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~ 172 (252)
T PF11019_consen 96 KGIPVIALTARG--PNMEDWTLRELKSLGIDFSSSS-FPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLD 172 (252)
T ss_pred CCCcEEEEcCCC--hhhHHHHHHHHHHCCCCccccc-cccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHH
Confidence 677899999996 3323333333344788987764 2222211 11 1 22346789999
Q ss_pred CCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEee
Q psy10371 90 HIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGI 132 (219)
Q Consensus 90 ~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~ 132 (219)
.++-.|++|.+++- -.+...+.++.+++. ++++ +|+
T Consensus 173 ~~~~~pk~IIfIDD----~~~nl~sv~~a~k~~-~I~f--~G~ 208 (252)
T PF11019_consen 173 KINQSPKKIIFIDD----NKENLKSVEKACKKS-GIDF--IGF 208 (252)
T ss_pred HcCCCCCeEEEEeC----CHHHHHHHHHHHhhC-CCcE--EEE
Confidence 99989999999983 356677788887763 4444 454
No 33
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=54.59 E-value=60 Score=30.25 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=47.2
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHH--------------HhhcCCCCCCceeE
Q psy10371 3 LIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIE--------------YHQQGKISFKYVKT 68 (219)
Q Consensus 3 i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~--------------~~~~~~i~w~~v~~ 68 (219)
+++.+|. |++..+++.+....+.. .+.-++.+.||.+...-.+.|.. +++...++.+++.+
T Consensus 103 Lil~PTR-ELA~Qi~~~~~~~~~~~----~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 103 LILAPTR-ELAVQIAEELRKLGKNL----GGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred EEECCCH-HHHHHHHHHHHHHHhhc----CCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCE
Confidence 6778888 77777777776666541 12347788888877666655553 34456799999999
Q ss_pred Eeecc
Q psy10371 69 FNMDE 73 (219)
Q Consensus 69 ~~~DE 73 (219)
+-.||
T Consensus 178 lVlDE 182 (513)
T COG0513 178 LVLDE 182 (513)
T ss_pred EEecc
Confidence 99999
No 34
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=53.81 E-value=68 Score=30.78 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=40.2
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCC------------------CHHHHHHHHHHHhhcCCCCCC
Q psy10371 3 LIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGG------------------TPLGMYKKLIEYHQQGKISFK 64 (219)
Q Consensus 3 i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGs------------------tp~~~y~~L~~~~~~~~i~w~ 64 (219)
+++.++. +|+..+++.+...... . .+.-++.+.||. ||..+++.|.. ..++.+
T Consensus 78 LIL~PTr-eLa~Qv~~~l~~~~~~-~---~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r----~~l~l~ 148 (629)
T PRK11634 78 LVLAPTR-ELAVQVAEAMTDFSKH-M---RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR----GTLDLS 148 (629)
T ss_pred EEEeCcH-HHHHHHHHHHHHHHhh-c---CCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc----CCcchh
Confidence 5667776 5666677666655443 1 223455566664 46666665543 678899
Q ss_pred ceeEEeecc
Q psy10371 65 YVKTFNMDE 73 (219)
Q Consensus 65 ~v~~~~~DE 73 (219)
++.++-+||
T Consensus 149 ~l~~lVlDE 157 (629)
T PRK11634 149 KLSGLVLDE 157 (629)
T ss_pred hceEEEecc
Confidence 999999999
No 35
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=53.12 E-value=26 Score=29.17 Aligned_cols=59 Identities=14% Similarity=0.033 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeeccc
Q psy10371 8 DVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEY 74 (219)
Q Consensus 8 ~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~ 74 (219)
+.+++.+.+...|.+.+++.. ...+.|+||||-.=.-+...+.+... =.+++.+.++..
T Consensus 2 ~~~~~~~~l~~~l~~~~~~~~---~~~vvv~lSGGiDSs~~a~la~~~~~-----~~~v~~~~~~~~ 60 (248)
T cd00553 2 DLEEIINALVLFLRDYLRKSG---FKGVVLGLSGGIDSALVAALAVRALG-----RENVLALFMPSR 60 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHhC---CCCEEEeCCCcHHHHHHHHHHHHHhC-----cccEEEEECCCC
Confidence 456777888888888887642 34699999999765555555544211 136788888763
No 36
>COG3588 Fructose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=52.00 E-value=32 Score=29.70 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=27.5
Q ss_pred EEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEE
Q psy10371 36 VLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTF 69 (219)
Q Consensus 36 ~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~ 69 (219)
.+.||||.+-..--..|..+.....++|+-+.-|
T Consensus 256 IvfLSGG~s~eeA~~~Lsa~n~~~~~pw~L~fSf 289 (332)
T COG3588 256 IVFLSGGYSSEEANAHLSANNGERPLPWSLIFSF 289 (332)
T ss_pred eEEecCCcchHHHHHHHHhhcCCCCCCceeeeeH
Confidence 7899999999998899988765567889866544
No 37
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=50.00 E-value=32 Score=28.56 Aligned_cols=36 Identities=8% Similarity=-0.052 Sum_probs=28.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 33 NYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 33 ~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
+.+.+++|||..-..++..+.+. ..++.++++|+-.
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~-------~~~i~vvfiDTG~ 76 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQV-------DPDIPVIFLDTGY 76 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc-------CCCCcEEEecCCC
Confidence 35899999999988888877762 2468999999933
No 38
>PRK06850 hypothetical protein; Provisional
Probab=49.61 E-value=71 Score=29.91 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=31.6
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhhcCCC--CCCceeEEeecccc
Q psy10371 32 DNYFVLGLPTGGTPLGMYKKLIEYHQQGKI--SFKYVKTFNMDEYG 75 (219)
Q Consensus 32 ~~~~~i~lsgGstp~~~y~~L~~~~~~~~i--~w~~v~~~~~DE~v 75 (219)
+.+.+|++|||..-..+...+.+....... .-+.|+++.+|--+
T Consensus 34 ~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgv 79 (507)
T PRK06850 34 NRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLV 79 (507)
T ss_pred CCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCC
Confidence 567999999999988887766654321110 13589999999877
No 39
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=49.11 E-value=1.8e+02 Score=25.26 Aligned_cols=48 Identities=15% Similarity=0.026 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 20 VLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 20 i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
..+.|++.+. .+++.+|||||-...- ...|+... ==++++..++|--+
T Consensus 11 ~i~~ir~~vg--~~kvi~alSGGVDSsv-~a~L~~~A-----iGd~l~cvfVD~GL 58 (315)
T COG0519 11 AIEEIREQVG--DGKVILALSGGVDSSV-AAVLAHRA-----IGDQLTCVFVDHGL 58 (315)
T ss_pred HHHHHHHHhC--CceEEEEecCCCcHHH-HHHHHHHH-----hhcceEEEEecCCc
Confidence 3344444342 5679999999987544 45555421 13588999999955
No 40
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=48.25 E-value=78 Score=28.80 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHhhcCCCCCCceeEEeecc
Q psy10371 44 TPLGMYKKLIEYHQQGKISFKYVKTFNMDE 73 (219)
Q Consensus 44 tp~~~y~~L~~~~~~~~i~w~~v~~~~~DE 73 (219)
||..+++.+. ...++++++.++-+||
T Consensus 132 TP~rL~~~~~----~~~~~l~~v~~lViDE 157 (456)
T PRK10590 132 TPGRLLDLEH----QNAVKLDQVEILVLDE 157 (456)
T ss_pred ChHHHHHHHH----cCCcccccceEEEeec
Confidence 3555555443 3567899999999999
No 41
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=46.78 E-value=97 Score=28.82 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=25.1
Q ss_pred cCCCCCCceeEEeecc-c-ccch-HHHHHHHhcCCCCCCCCCCeEeCCCC
Q psy10371 58 QGKISFKYVKTFNMDE-Y-GRNF-LTKLFRHNFFSHIDIQPENVHILDGN 104 (219)
Q Consensus 58 ~~~i~w~~v~~~~~DE-~-v~~~-~~~~~~~~l~~~~~i~~~~i~~~~~~ 104 (219)
...+..+++.++-+|| - +.+. +...+.+. +..+ +..++..+..+
T Consensus 263 ~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i-~~~l--~~~q~l~~SAT 309 (518)
T PLN00206 263 KHDIELDNVSVLVLDEVDCMLERGFRDQVMQI-FQAL--SQPQVLLFSAT 309 (518)
T ss_pred cCCccchheeEEEeecHHHHhhcchHHHHHHH-HHhC--CCCcEEEEEee
Confidence 3578899999999999 3 3333 33222221 1222 34467666544
No 42
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=46.72 E-value=1.4e+02 Score=23.31 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhCCccEEEEeecC
Q psy10371 110 AECVQYEKDIKEAGGIHLFVGGIGP 134 (219)
Q Consensus 110 ~~~~~y~~~i~~~~~~Dl~lLG~G~ 134 (219)
++.++.-+.|++. +.|++++|||.
T Consensus 88 ~~~~~i~~~I~~~-~pdiv~vglG~ 111 (172)
T PF03808_consen 88 EEEEAIINRINAS-GPDIVFVGLGA 111 (172)
T ss_pred hhHHHHHHHHHHc-CCCEEEEECCC
Confidence 3445566777776 55999999996
No 43
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=46.35 E-value=13 Score=17.91 Aligned_cols=11 Identities=55% Similarity=0.848 Sum_probs=9.0
Q ss_pred cCCCcccccCC
Q psy10371 133 GPDGHIAFNEP 143 (219)
Q Consensus 133 G~DGHiaslfP 143 (219)
|..||++...|
T Consensus 7 ~~~GH~~~~Cp 17 (18)
T PF00098_consen 7 GEPGHIARDCP 17 (18)
T ss_dssp SCSSSCGCTSS
T ss_pred CCcCcccccCc
Confidence 77899998776
No 44
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.56 E-value=85 Score=28.69 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHhhcCCCCCCceeEEeecc
Q psy10371 44 TPLGMYKKLIEYHQQGKISFKYVKTFNMDE 73 (219)
Q Consensus 44 tp~~~y~~L~~~~~~~~i~w~~v~~~~~DE 73 (219)
||..+++.+. ...+.++++.++-+||
T Consensus 220 TP~~Ll~~~~----~~~~~l~~l~~lViDE 245 (475)
T PRK01297 220 TPGRLLDFNQ----RGEVHLDMVEVMVLDE 245 (475)
T ss_pred CHHHHHHHHH----cCCcccccCceEEech
Confidence 3555544433 3567789999999999
No 45
>PTZ00110 helicase; Provisional
Probab=42.55 E-value=73 Score=29.91 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCCceeEEeecc
Q psy10371 44 TPLGMYKKLIEYHQQGKISFKYVKTFNMDE 73 (219)
Q Consensus 44 tp~~~y~~L~~~~~~~~i~w~~v~~~~~DE 73 (219)
||..+.+.|.+ ..++++++.++-+||
T Consensus 260 TPgrL~d~l~~----~~~~l~~v~~lViDE 285 (545)
T PTZ00110 260 CPGRLIDFLES----NVTNLRRVTYLVLDE 285 (545)
T ss_pred CHHHHHHHHHc----CCCChhhCcEEEeeh
Confidence 45555555443 567889999999999
No 46
>PRK00768 nadE NAD synthetase; Reviewed
Probab=41.77 E-value=47 Score=28.34 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCH
Q psy10371 8 DVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTP 45 (219)
Q Consensus 8 ~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp 45 (219)
+++...+.+.++|.+.++++- -..++|+||||-.-
T Consensus 17 ~~~~~~~~i~~~L~~~l~~~g---~~g~VlGlSGGIDS 51 (268)
T PRK00768 17 DPEEEIRRRVDFLKDYLKKSG---LKSLVLGISGGQDS 51 (268)
T ss_pred CHHHHHHHHHHHHHHHHHHcC---CCeEEEECCCCHHH
Confidence 566777777888888887742 33599999999653
No 47
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=41.16 E-value=76 Score=25.19 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=39.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHh--hcCCCCCCceeEEeecccc--cch-HHHHHHHhcCCCCCCCCCCeEeCCCCCCC
Q psy10371 33 NYFVLGLPTGGTPLGMYKKLIEYH--QQGKISFKYVKTFNMDEYG--RNF-LTKLFRHNFFSHIDIQPENVHILDGNAPD 107 (219)
Q Consensus 33 ~~~~i~lsgGstp~~~y~~L~~~~--~~~~i~w~~v~~~~~DE~v--~~~-~~~~~~~~l~~~~~i~~~~i~~~~~~~~~ 107 (219)
..+.|+|+||. ..++++.+.+ .+..+-.+.+.+++.+.|+ .-. .+..+.+.|+++-.. +-++.. ++
T Consensus 97 sda~I~lPGG~---GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~--~~~~~~----d~ 167 (178)
T TIGR00730 97 ADAFIAMPGGF---GTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHL--KLIHVV----SR 167 (178)
T ss_pred CCEEEEcCCCc---chHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHc--CcEEEc----CC
Confidence 45899999994 3344444322 1223456788888888876 222 344446666554321 223332 46
Q ss_pred HHHHHHH
Q psy10371 108 LHAECVQ 114 (219)
Q Consensus 108 ~~~~~~~ 114 (219)
+++..+.
T Consensus 168 ~~e~~~~ 174 (178)
T TIGR00730 168 PDELIEQ 174 (178)
T ss_pred HHHHHHH
Confidence 6665443
No 48
>PTZ00323 NAD+ synthase; Provisional
Probab=41.06 E-value=1.4e+02 Score=25.74 Aligned_cols=39 Identities=8% Similarity=-0.091 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHH
Q psy10371 8 DVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMY 49 (219)
Q Consensus 8 ~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y 49 (219)
+++++.+.....|.+.++..- .+.++|+||||-.-.-+.
T Consensus 25 ~~~~~i~~~~~~L~~~l~~~g---~~~vVVglSGGVDSav~a 63 (294)
T PTZ00323 25 NPAAWIEKKCAKLNEYMRRCG---LKGCVTSVSGGIDSAVVL 63 (294)
T ss_pred CHHHHHHHHHHHHHHHHHHcC---CCcEEEECCCCHHHHHHH
Confidence 567778888888888887632 346999999996644433
No 49
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=41.00 E-value=42 Score=25.16 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=27.9
Q ss_pred eEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 35 FVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 35 ~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
+.+++|||..=..+...+.+..... .++.++++|.-.
T Consensus 2 i~v~~SGGkDS~~ll~l~~~~~~~~----~~~~~v~~dtg~ 38 (173)
T cd01713 2 VVVSFSGGKDSTVLLHLALKALPEL----KPVPVIFLDTGY 38 (173)
T ss_pred eEEEecCChHHHHHHHHHHHhcccc----cCceEEEeCCCC
Confidence 6899999999888888877642211 578899999844
No 50
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=40.87 E-value=1.2e+02 Score=27.48 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=36.6
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCC------------------CHHHHHHHHHHHhhcCCCCCC
Q psy10371 3 LIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGG------------------TPLGMYKKLIEYHQQGKISFK 64 (219)
Q Consensus 3 i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGs------------------tp~~~y~~L~~~~~~~~i~w~ 64 (219)
+++.++. +++...++.+....+. . .+.-+..+.||. ||..+++.+.+ ..++++
T Consensus 76 lil~Ptr-eLa~Q~~~~~~~~~~~-~---~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~----~~~~l~ 146 (460)
T PRK11776 76 LVLCPTR-ELADQVAKEIRRLARF-I---PNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK----GTLDLD 146 (460)
T ss_pred EEEeCCH-HHHHHHHHHHHHHHhh-C---CCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc----CCccHH
Confidence 4566765 4555556555443322 1 122344555654 45555555443 678899
Q ss_pred ceeEEeecc
Q psy10371 65 YVKTFNMDE 73 (219)
Q Consensus 65 ~v~~~~~DE 73 (219)
++.++-+||
T Consensus 147 ~l~~lViDE 155 (460)
T PRK11776 147 ALNTLVLDE 155 (460)
T ss_pred HCCEEEEEC
Confidence 999999999
No 51
>PRK13980 NAD synthetase; Provisional
Probab=40.08 E-value=1.4e+02 Score=25.16 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeeccc
Q psy10371 8 DVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEY 74 (219)
Q Consensus 8 ~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~ 74 (219)
+.+.+.+.+...|.+.+++.. ..++.|+||||-.=.-+...+.+.. .=.+++.+.++-.
T Consensus 9 ~~~~~~~~l~~~l~~~v~~~g---~~~vvv~lSGGiDSsv~a~l~~~~~-----~~~~v~av~~~~~ 67 (265)
T PRK13980 9 DYEKVREIIVDFIREEVEKAG---AKGVVLGLSGGIDSAVVAYLAVKAL-----GKENVLALLMPSS 67 (265)
T ss_pred CHHHHHHHHHHHHHHHHHHcC---CCcEEEECCCCHHHHHHHHHHHHHh-----CccceEEEEeeCC
Confidence 566677777777777777642 2469999999976555555555421 1136777777753
No 52
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=39.39 E-value=1.4e+02 Score=26.60 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecc
Q psy10371 11 NVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDE 73 (219)
Q Consensus 11 ~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE 73 (219)
.+.+++-++|.=..+. .++ +-|++|||..-.-++..+++...+. .-++|++++.|=
T Consensus 11 nV~eA~~eRl~~if~~-f~~----VcVSFSGGKDS~lmLhL~~~~ar~~--~~~~i~VlfiD~ 66 (407)
T COG3969 11 NVLEAAIERLEWIFNT-FPR----VCVSFSGGKDSGLMLHLVAEVAREN--GRDKISVLFIDW 66 (407)
T ss_pred hHHHHHHHHHHHHHhc-CCe----EEEEecCCCchhHHHHHHHHHHHHh--CCCceEEEEEcc
Confidence 4444554555444433 443 8999999999888888888765433 344599999884
No 53
>KOG0452|consensus
Probab=37.47 E-value=54 Score=31.21 Aligned_cols=42 Identities=26% Similarity=0.555 Sum_probs=31.3
Q ss_pred HHHhcCCCCCCCCCCeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEe
Q psy10371 83 FRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGG 131 (219)
Q Consensus 83 ~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG 131 (219)
+-..|+++.+ |..+|.+.++.-|.-++|++|.+. +.|++||-
T Consensus 732 lvNkl~~k~g--P~TvHiPsge~ldvFdAA~~Y~~~-----g~p~iila 773 (892)
T KOG0452|consen 732 LVNKLLSKVG--PKTVHIPSGEELDVFDAAERYKSE-----GIPLIILA 773 (892)
T ss_pred HHHHHhcccC--CceEecCCCCeecHhhHHHHHHhc-----CCceEEEe
Confidence 3355666543 778998888766788889999876 77888874
No 54
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=37.44 E-value=49 Score=27.60 Aligned_cols=54 Identities=15% Similarity=0.040 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 14 EWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 14 ~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
+++...|.+.+++.. .+.++|+||||-.- .+-..|+.. .+.=++++-+.++...
T Consensus 3 ~~l~~~L~~~~~~~g---~~~vVvglSGGiDS-av~A~La~~----Alg~~~v~~v~mp~~~ 56 (242)
T PF02540_consen 3 EALVDFLRDYVKKSG---AKGVVVGLSGGIDS-AVVAALAVK----ALGPDNVLAVIMPSGF 56 (242)
T ss_dssp HHHHHHHHHHHHHHT---TSEEEEEETSSHHH-HHHHHHHHH----HHGGGEEEEEEEESST
T ss_pred HHHHHHHHHHHHHhC---CCeEEEEcCCCCCH-HHHHHHHHH----Hhhhcccccccccccc
Confidence 466677777777643 34699999999653 333444432 1222588888888533
No 55
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=35.83 E-value=1.6e+02 Score=26.39 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeEEeecc
Q psy10371 45 PLGMYKKLIEYHQQGKISFKYVKTFNMDE 73 (219)
Q Consensus 45 p~~~y~~L~~~~~~~~i~w~~v~~~~~DE 73 (219)
|..+++.+. ...++++++.++-+||
T Consensus 141 P~~l~~~l~----~~~~~l~~v~~lViDE 165 (423)
T PRK04837 141 TGRLIDYAK----QNHINLGAIQVVVLDE 165 (423)
T ss_pred HHHHHHHHH----cCCcccccccEEEEec
Confidence 444544443 3678899999999999
No 56
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=34.75 E-value=83 Score=28.26 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=36.4
Q ss_pred HHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 20 VLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 20 i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
..+.+++++++ ++.-++++|.-.++..+-+.+.. .+.||-++++.++|+.-
T Consensus 132 ~~df~~kak~e-GkIr~~GFSfHgs~e~~~~iv~a----~~~dfvqlq~ny~d~~n 182 (391)
T COG1453 132 VFDFLEKAKAE-GKIRNAGFSFHGSTEVFKEIVDA----YPWDFVQLQYNYIDQKN 182 (391)
T ss_pred hHHHHHHHHhc-CcEEEeeecCCCCHHHHHHHHhc----CCcceEEeeeeeeccch
Confidence 45666666664 67788999998875554444443 56888999999999944
No 57
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=34.57 E-value=55 Score=25.98 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCccEEEEeecC
Q psy10371 113 VQYEKDIKEAGGIHLFVGGIGP 134 (219)
Q Consensus 113 ~~y~~~i~~~~~~Dl~lLG~G~ 134 (219)
+...+.|++. +.|++++|||.
T Consensus 90 ~~i~~~I~~s-~~dil~VglG~ 110 (177)
T TIGR00696 90 KAALAKIARS-GAGIVFVGLGC 110 (177)
T ss_pred HHHHHHHHHc-CCCEEEEEcCC
Confidence 4567778776 56999999996
No 58
>KOG0347|consensus
Probab=34.51 E-value=1.2e+02 Score=29.04 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=44.8
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCC------------------CHHHHHHHHHHHhhcCCCCCC
Q psy10371 3 LIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGG------------------TPLGMYKKLIEYHQQGKISFK 64 (219)
Q Consensus 3 i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGs------------------tp~~~y~~L~~~~~~~~i~w~ 64 (219)
+++.+|.+ +|..|.+++....+. -+.-+.++.||- ||-.+++.+.+.... -=.|+
T Consensus 267 LV~tPTRE-----La~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~-l~~~k 339 (731)
T KOG0347|consen 267 LVVTPTRE-----LAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH-LGNFK 339 (731)
T ss_pred EEecChHH-----HHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh-hhhhh
Confidence 45666653 444444455443332 455666777774 455555555542110 12799
Q ss_pred ceeEEeecc--cc--cchHHH--HHHHhcC
Q psy10371 65 YVKTFNMDE--YG--RNFLTK--LFRHNFF 88 (219)
Q Consensus 65 ~v~~~~~DE--~v--~~~~~~--~~~~~l~ 88 (219)
+|.+..+|| |+ .+|+.. .+-++|.
T Consensus 340 ~vkcLVlDEaDRmvekghF~Els~lL~~L~ 369 (731)
T KOG0347|consen 340 KVKCLVLDEADRMVEKGHFEELSKLLKHLN 369 (731)
T ss_pred hceEEEEccHHHHhhhccHHHHHHHHHHhh
Confidence 999999999 66 566443 2444554
No 59
>PLN02347 GMP synthetase
Probab=34.10 E-value=3.4e+02 Score=25.61 Aligned_cols=38 Identities=13% Similarity=0.024 Sum_probs=27.2
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 32 DNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 32 ~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
.+++.+|+|||-.-.-+...+.+. +. ++++-+.+|.-.
T Consensus 229 ~~~vvvalSGGVDSsvla~l~~~a-----lG-~~v~av~id~g~ 266 (536)
T PLN02347 229 DEHVICALSGGVDSTVAATLVHKA-----IG-DRLHCVFVDNGL 266 (536)
T ss_pred CCeEEEEecCChhHHHHHHHHHHH-----hC-CcEEEEEEeCCC
Confidence 677999999998755555555442 23 589999999844
No 60
>PRK08557 hypothetical protein; Provisional
Probab=33.20 E-value=1.5e+02 Score=27.05 Aligned_cols=54 Identities=13% Similarity=-0.034 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 14 EWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 14 ~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
+.+-+.|.+.+++.... +..+.+++|||..-..+...+.+. ...+.++++|--.
T Consensus 164 ~~ai~~i~~~~~~~~~~-~~~i~vsfSGGKDS~vlL~L~~~~-------~~~i~vvfvDTG~ 217 (417)
T PRK08557 164 ENSLSILKDYIEKYKNK-GYAINASFSGGKDSSVSTLLAKEV-------IPDLEVIFIDTGL 217 (417)
T ss_pred HHHHHHHHHHHHHcCCC-CcEEEEEcCCcHHHHHHHHHHHHh-------CCCCEEEEEECCC
Confidence 33334444444442221 346789999998877776655542 2357888888844
No 61
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=32.80 E-value=1.2e+02 Score=25.29 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHH
Q psy10371 11 NVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLI 53 (219)
Q Consensus 11 ~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~ 53 (219)
+-...+|+++.+.+... ...+.||||..-....-|..-+
T Consensus 21 ~~~~~La~rLkeil~~~----~~~~lVclpd~F~~~~~~n~~~ 59 (225)
T PF08759_consen 21 EYDPELAKRLKEILRSS----NENLLVCLPDVFHDLDRYNEDA 59 (225)
T ss_pred CCCHHHHHHHHHHHhCC----CCCEEEECCcccCChhhccHhH
Confidence 34456777777777442 4469999999765555444443
No 62
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=32.69 E-value=2.5e+02 Score=25.18 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHhhcCCCCCCceeEEeecc
Q psy10371 44 TPLGMYKKLIEYHQQGKISFKYVKTFNMDE 73 (219)
Q Consensus 44 tp~~~y~~L~~~~~~~~i~w~~v~~~~~DE 73 (219)
||..+++.+.. ..++.+++.++-+||
T Consensus 130 Tp~rl~~~~~~----~~~~~~~v~~lViDE 155 (434)
T PRK11192 130 TPGRLLQYIKE----ENFDCRAVETLILDE 155 (434)
T ss_pred ChHHHHHHHHc----CCcCcccCCEEEEEC
Confidence 45555555443 677889999999999
No 63
>PF00274 Glycolytic: Fructose-bisphosphate aldolase class-I; InterPro: IPR000741 Fructose-bisphosphate aldolase (4.1.2.13 from EC) [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms: class I enzymes [] do not require a metal ion, and are characterised by the formation of a Schiff base intermediate between a highly conserved active site lysine and a substrate carbonyl group, while the class II enzymes require an active-site divalent metal ion. This entry represents the class I enzymes. In vertebrates, three forms of this enzyme are found: aldolase A is expressed in muscle, aldolase B in liver, kidney, stomach and intestine, and aldolase C in brain, heart and ovary. The different isozymes have different catalytic functions: aldolases A and C are mainly involved in glycolysis, while aldolase B is involved in both glycolysis and gluconeogenesis. Defects in aldolase B result in hereditary fructose intolerance.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis; PDB: 1EX5_B 6ALD_D 2QUU_B 3DFN_B 1ADO_B 3DFO_A 1ZAL_A 1J4E_C 3DFP_A 1ZAJ_B ....
Probab=32.52 E-value=2.1e+02 Score=25.41 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhc-CCCCCCceeEE
Q psy10371 14 EWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQ-GKISFKYVKTF 69 (219)
Q Consensus 14 ~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~-~~i~w~~v~~~ 69 (219)
+.+|..-+..++..++. .=+-++.||||.+...--..|...... ..-+|.-.+-|
T Consensus 232 ~~vA~~T~~~l~~~vP~-aVpgIvFLSGGqs~e~At~~Lna~n~~~~~~PW~lsFSf 287 (348)
T PF00274_consen 232 EEVAEATVRALRRTVPA-AVPGIVFLSGGQSEEEATANLNAINKMPGNKPWPLSFSF 287 (348)
T ss_dssp HHHHHHHHHHHHHHSBT-TSSEEEEB-TTS-HHHHHHHHHHHHHSSS--SSEEEEEE
T ss_pred HHHHHHHHHHHHHhccc-ccceeEecCCCCCHHHHHHHHHHhhCCCcCCChheeEEe
Confidence 34555555666666664 445689999999999988888876443 24567554443
No 64
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=31.46 E-value=2.6e+02 Score=22.03 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=48.0
Q ss_pred EEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhh--cCCCCCCceeEEeecc-cc
Q psy10371 4 IILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQ--QGKISFKYVKTFNMDE-YG 75 (219)
Q Consensus 4 ~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~--~~~i~w~~v~~~~~DE-~v 75 (219)
.+|++.+++.+.++.+|.+-++. +.++.++.+...+...+-+.|.+... ...++=.++.+....| |.
T Consensus 24 ~~Y~~~~e~~~~~~~Fi~~GL~~-----ge~~l~v~~~~~~~~~l~~~L~~~~~d~~~~~~~gqL~~~~~~~~Y~ 93 (191)
T PF14417_consen 24 AFYDDEEELLEVLVPFIREGLAR-----GERCLYVAPDPRRVEELRDELRKAGPDVEQYLDSGQLELLDAEEWYL 93 (191)
T ss_pred EEECCHHHHHHHHHHHHHHHHHC-----CCeEEEEECCCCCHHHHHHHHHhcCCchhhcccCCCEEEecchhhhc
Confidence 57999999999999999998875 44466666646677788888854211 1234457888888888 55
No 65
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=31.29 E-value=76 Score=29.20 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=31.5
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhhcC--CCCCCceeEEeecccc
Q psy10371 32 DNYFVLGLPTGGTPLGMYKKLIEYHQQG--KISFKYVKTFNMDEYG 75 (219)
Q Consensus 32 ~~~~~i~lsgGstp~~~y~~L~~~~~~~--~i~w~~v~~~~~DE~v 75 (219)
+.+++|+.|||..-..++...-...... ...-..++++..|--+
T Consensus 13 ~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgv 58 (447)
T TIGR03183 13 DIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLV 58 (447)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCC
Confidence 5678999999998888877665543211 1124689999999966
No 66
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=30.85 E-value=87 Score=26.04 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHH
Q psy10371 11 NVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLI 53 (219)
Q Consensus 11 ~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~ 53 (219)
...+.+.+.|.+.++... ...+.|+||||-.=.-+...+.
T Consensus 4 ~~~~~l~~~l~~~v~~~~---~~~V~vglSGGiDSsvla~l~~ 43 (250)
T TIGR00552 4 KYVEEIEDFLRGYVQKSG---AKGVVLGLSGGIDSAVVAALCV 43 (250)
T ss_pred hHHHHHHHHHHHHHHHhC---CCCEEEECCCcHHHHHHHHHHH
Confidence 344556666666665532 4469999999966554444443
No 67
>PRK07024 short chain dehydrogenase; Provisional
Probab=29.54 E-value=3e+02 Score=22.21 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=26.7
Q ss_pred CeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEeecC
Q psy10371 97 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGP 134 (219)
Q Consensus 97 ~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 134 (219)
+++.+..+..+++...+..++..++++.+|+++.--|.
T Consensus 51 ~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 51 RVSVYAADVRDADALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred eeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 56666666566666556666667777889999987775
No 68
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=29.53 E-value=1.7e+02 Score=22.08 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEec---CCC-CHHH-HHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 16 SARYVLKKITDFKPGPDNYFVLGLP---TGG-TPLG-MYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 16 ~a~~i~~~i~~~~~~~~~~~~i~ls---gGs-tp~~-~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
..+.|.+.+++... ..++|++| .|+ ++.. .-+.+++.... .+ ++.+++.|||.
T Consensus 42 ~~~~l~~~i~~~~i---~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~-~~---~~~v~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQP---DGLVVGLPLNMDGTEGPRTERARKFANRLEG-RF---GLPVVLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCC---CEEEEeccCCCCCCcCHHHHHHHHHHHHHHH-Hh---CCCEEEEcCCc
Confidence 35666677766433 35899987 444 3422 22333332221 11 67899999987
No 69
>PRK00876 nadE NAD synthetase; Reviewed
Probab=29.11 E-value=1e+02 Score=27.13 Aligned_cols=60 Identities=18% Similarity=0.076 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeeccc
Q psy10371 8 DVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEY 74 (219)
Q Consensus 8 ~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~ 74 (219)
+.++..+.+.+.|.+.+++... ...+.++||||-.=.-+.-.+.+. +...++..+.++..
T Consensus 11 ~~~~~~e~i~~~l~~~V~~~~~--~~~VvVgLSGGIDSSvvaaLa~~a-----~g~~~v~av~~~~~ 70 (326)
T PRK00876 11 DAAAEAERIRAAIREQVRGTLR--RRGVVLGLSGGIDSSVTAALCVRA-----LGKERVYGLLMPER 70 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHHcC--CCCEEEEccCCHHHHHHHHHHHHh-----hCCCcEEEEEecCC
Confidence 4556667777777777776322 236999999997655444333331 12246777777764
No 70
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=28.25 E-value=85 Score=26.43 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHH
Q psy10371 11 NVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIE 54 (219)
Q Consensus 11 ~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~ 54 (219)
++.+...+.+.+.+++.++. ...-.|.|+||++-.+-...+.+
T Consensus 200 ~ii~~~~~~i~~~i~~~l~~-~~~~~IvLtGG~s~lpgl~e~l~ 242 (267)
T PRK15080 200 PVVKPVVEKMASIVARHIEG-QDVEDIYLVGGTCCLPGFEEVFE 242 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCCEEEEECCcccchhHHHHHH
Confidence 34445555666666665544 44568899999988776666655
No 71
>PHA02620 VP3; Provisional
Probab=28.08 E-value=1.2e+02 Score=26.90 Aligned_cols=44 Identities=11% Similarity=0.363 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhc
Q psy10371 9 VSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQ 58 (219)
Q Consensus 9 ~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~ 58 (219)
..+++......+.+.|.+..++ +.++|+.+ |..+|+.|.+.+..
T Consensus 177 ~~~l~~rt~~~~~D~LAR~~En----aRW~V~~~--p~~~Y~~L~~YY~~ 220 (353)
T PHA02620 177 SQEIERRTQRFFRDSLARFLEE----TTWTIVNA--PINLYNSIQDYYSA 220 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----ceEEEecC--cHHHHHHHHHHHHh
Confidence 3567777788888888887776 88899888 88899999887654
No 72
>KOG0235|consensus
Probab=27.49 E-value=3.4e+02 Score=22.39 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHH----hhcCCCCCCceeEEeecccc
Q psy10371 7 DDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEY----HQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 7 ~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~----~~~~~i~w~~v~~~~~DE~v 75 (219)
++.++....+-.+..+.|...+. +|..++.++.|++-..++..|-.. .....++=.-..++-+|++.
T Consensus 132 EsL~~~~~R~~~~~~e~i~~~~~--~gk~Vli~aHGnsLR~i~~~l~g~s~~~i~~~~~~t~vp~v~~ld~~~ 202 (214)
T KOG0235|consen 132 ESLKDCLDRLLPFWNEEIAKESK--EGKNVLIVAHGNSLRAIVKHLEGISDEAIKELNLPTGVPIVYELDKNK 202 (214)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhc--CCcEEEEEcCcHHHHHHHHHHhcCCHhhhhheecccCCceEEEccccc
Confidence 34566777777788878877554 567888999999999999888632 22233444555666677744
No 73
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=26.93 E-value=4.5e+02 Score=23.31 Aligned_cols=82 Identities=13% Similarity=0.015 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCceeEEeecc--cc-cch-HHH--HHHHhcCCCCCCCCCCeEeCCCCCCCHHHHHHHH
Q psy10371 42 GGTPLGMYKKLIEYHQQGKISFKYVKTFNMDE--YG-RNF-LTK--LFRHNFFSHIDIQPENVHILDGNAPDLHAECVQY 115 (219)
Q Consensus 42 Gstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE--~v-~~~-~~~--~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y 115 (219)
|.++...+-.+++...+...+ .+...|- .. |.. ... .+++.+ . ..+=.+|.=+... ...+..+
T Consensus 192 ~r~~~~~l~~~~~~~~~~Gad----~I~l~DT~G~a~P~~v~~lv~~l~~~~-~---~~~i~~H~Hnd~G---lA~AN~l 260 (347)
T PLN02746 192 GPVPPSKVAYVAKELYDMGCY----EISLGDTIGVGTPGTVVPMLEAVMAVV-P---VDKLAVHFHDTYG---QALANIL 260 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCC----EEEecCCcCCcCHHHHHHHHHHHHHhC-C---CCeEEEEECCCCC---hHHHHHH
Confidence 666666666666644433332 3555665 22 333 222 344443 2 1122466555432 1222233
Q ss_pred HHHHHHhCCccEEEEeecC
Q psy10371 116 EKDIKEAGGIHLFVGGIGP 134 (219)
Q Consensus 116 ~~~i~~~~~~Dl~lLG~G~ 134 (219)
...-.-...||..+.|||.
T Consensus 261 AA~~aGa~~vd~sv~GlGe 279 (347)
T PLN02746 261 VSLQMGISTVDSSVAGLGG 279 (347)
T ss_pred HHHHhCCCEEEEecccccC
Confidence 3332223359999999995
No 74
>KOG3363|consensus
Probab=26.88 E-value=46 Score=26.33 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=17.6
Q ss_pred CCccEEEEeecCCCcccccCCC
Q psy10371 123 GGIHLFVGGIGPDGHIAFNEPG 144 (219)
Q Consensus 123 ~~~Dl~lLG~G~DGHiaslfP~ 144 (219)
+.+|++++|+|.+-|.--+-|.
T Consensus 110 PkidlLIvG~Gd~~~p~~v~~~ 131 (196)
T KOG3363|consen 110 PKIDLLIVGCGDKKHPDKVRPS 131 (196)
T ss_pred CCccEEEEecCCcCCchhcCHH
Confidence 3599999999999998655544
No 75
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=26.26 E-value=82 Score=26.69 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHhCCccEEEEeecC
Q psy10371 107 DLHAECVQYEKDIKEAGGIHLFVGGIGP 134 (219)
Q Consensus 107 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 134 (219)
+++++ ++.-+.|... +.|+++.|||.
T Consensus 146 ~~~e~-~~i~~~I~~s-~pdil~VgmG~ 171 (253)
T COG1922 146 DPEEE-EAIVERIAAS-GPDILLVGMGV 171 (253)
T ss_pred ChhhH-HHHHHHHHhc-CCCEEEEeCCC
Confidence 44444 5666777776 55999999995
No 76
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=25.75 E-value=4.2e+02 Score=22.60 Aligned_cols=83 Identities=17% Similarity=0.066 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCceeEEeecc--cc-cch-HHH--HHHHhcCCCCCCCCCCeEeCCCCCCCHHHHHHH
Q psy10371 41 TGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDE--YG-RNF-LTK--LFRHNFFSHIDIQPENVHILDGNAPDLHAECVQ 114 (219)
Q Consensus 41 gGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE--~v-~~~-~~~--~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~ 114 (219)
.|.++...+..+++...+...+ .+...|- +. |.. ++. .+++.+ +.+++ .+|.=+... ...+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~G~d----~i~l~DT~G~~~P~~v~~lv~~l~~~~-~~~~i---~~H~Hn~~G---la~AN~ 217 (287)
T PRK05692 149 EGEVPPEAVADVAERLFALGCY----EISLGDTIGVGTPGQVRAVLEAVLAEF-PAERL---AGHFHDTYG---QALANI 217 (287)
T ss_pred CCCCCHHHHHHHHHHHHHcCCc----EEEeccccCccCHHHHHHHHHHHHHhC-CCCeE---EEEecCCCC---cHHHHH
Confidence 3466667777777655444433 3556666 22 444 333 345554 32332 455544332 111222
Q ss_pred HHHHHHHhCCccEEEEeecC
Q psy10371 115 YEKDIKEAGGIHLFVGGIGP 134 (219)
Q Consensus 115 y~~~i~~~~~~Dl~lLG~G~ 134 (219)
+...-.-...+|..+.|||.
T Consensus 218 laA~~aG~~~id~s~~GlGe 237 (287)
T PRK05692 218 YASLEEGITVFDASVGGLGG 237 (287)
T ss_pred HHHHHhCCCEEEEEccccCC
Confidence 33322222359999999997
No 77
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=25.55 E-value=2.5e+02 Score=24.31 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=53.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecc-cc-cch--HHHHHHHhcCCCCCCCCCCeEeC-------
Q psy10371 33 NYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDE-YG-RNF--LTKLFRHNFFSHIDIQPENVHIL------- 101 (219)
Q Consensus 33 ~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE-~v-~~~--~~~~~~~~l~~~~~i~~~~i~~~------- 101 (219)
++..+++|||..-.-++..+.+.....++ .+.++.+|. +- +.- +...+.+. ++++- .++..
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~---~~~vl~iDTG~~FpEt~ef~d~~a~~----~gl~l-~v~~~~~~i~~g 99 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKL---PFPLLHVDTGWKFPEMIEFRDRRAKE----LGLEL-IVHSNPEGIARG 99 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCC---CeeEEEEeCCCCCHHHHHHHHHHHHH----hCCCE-EEEeChHHHhcC
Confidence 35889999999888888887765332233 356778887 43 332 22222222 22211 11110
Q ss_pred -CCCCCCHHHHHHHHH-----HHHHHhCCccEEEEeecCCCccc
Q psy10371 102 -DGNAPDLHAECVQYE-----KDIKEAGGIHLFVGGIGPDGHIA 139 (219)
Q Consensus 102 -~~~~~~~~~~~~~y~-----~~i~~~~~~Dl~lLG~G~DGHia 139 (219)
.....++..+|.... +.++++ ++|.++.|.=.|=+-+
T Consensus 100 ~~~~~~~~~~cC~~lK~~pL~~al~e~-g~da~~~G~RrDE~~~ 142 (301)
T PRK05253 100 INPFRHGSAKHTNAMKTEGLKQALEKY-GFDAAFGGARRDEEKS 142 (301)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHc-CCCEEEeccccchhhh
Confidence 011123445565543 333443 7999999998876544
No 78
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=25.53 E-value=88 Score=22.60 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=16.0
Q ss_pred HHHHHHHhCCccEEEEeecCCCc
Q psy10371 115 YEKDIKEAGGIHLFVGGIGPDGH 137 (219)
Q Consensus 115 y~~~i~~~~~~Dl~lLG~G~DGH 137 (219)
.+..+... .+|++++|.|..++
T Consensus 44 l~~~~~~~-~peiliiGTG~~~~ 65 (109)
T cd00248 44 LLPLLAED-RPDILLIGTGAEIA 65 (109)
T ss_pred HHHHHhhC-CCCEEEEcCCCCCC
Confidence 44444443 58999999999885
No 79
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=25.21 E-value=2.9e+02 Score=24.60 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=44.9
Q ss_pred CCceEEEecCCCCH--HHHHHHHHHHhhcCCCCCCceeEEeecccc--cch-HH--HHHHHhcCCCCCCCCCCeEeCCCC
Q psy10371 32 DNYFVLGLPTGGTP--LGMYKKLIEYHQQGKISFKYVKTFNMDEYG--RNF-LT--KLFRHNFFSHIDIQPENVHILDGN 104 (219)
Q Consensus 32 ~~~~~i~lsgGstp--~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v--~~~-~~--~~~~~~l~~~~~i~~~~i~~~~~~ 104 (219)
+++..++.+-|..+ ....+.|++ . .+.++.+|--- ..+ .+ ..+++.+- +++|-..|+
T Consensus 94 ~~~l~V~aavg~~~~~~er~~~L~~----a-----gvD~ivID~a~g~s~~~~~~ik~ik~~~~-~~~viaGNV------ 157 (352)
T PF00478_consen 94 KGRLLVAAAVGTRDDDFERAEALVE----A-----GVDVIVIDSAHGHSEHVIDMIKKIKKKFP-DVPVIAGNV------ 157 (352)
T ss_dssp TSCBCEEEEEESSTCHHHHHHHHHH----T-----T-SEEEEE-SSTTSHHHHHHHHHHHHHST-TSEEEEEEE------
T ss_pred cccceEEEEecCCHHHHHHHHHHHH----c-----CCCEEEccccCccHHHHHHHHHHHHHhCC-CceEEeccc------
Confidence 55666677666655 556666665 2 44666777522 333 22 23555552 344333444
Q ss_pred CCCHHHHHHHHHHHHHHhCCccEEEEeecCCCcccc
Q psy10371 105 APDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAF 140 (219)
Q Consensus 105 ~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGHias 140 (219)
.+.+. .+.+++ . +.|.+..|||+ |.+|.
T Consensus 158 -~T~e~----a~~L~~-a-Gad~vkVGiGp-GsiCt 185 (352)
T PF00478_consen 158 -VTYEG----AKDLID-A-GADAVKVGIGP-GSICT 185 (352)
T ss_dssp --SHHH----HHHHHH-T-T-SEEEESSSS-STTBH
T ss_pred -CCHHH----HHHHHH-c-CCCEEEEeccC-Ccccc
Confidence 23332 223343 3 68999999997 77774
No 80
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=25.07 E-value=3e+02 Score=25.11 Aligned_cols=46 Identities=7% Similarity=-0.138 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHH
Q psy10371 8 DVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIE 54 (219)
Q Consensus 8 ~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~ 54 (219)
+.++..+.+.+.+.+.++..... ..++.+.||||-.=..+...+.+
T Consensus 230 ~~~~~~e~l~~~l~~aV~~r~~~-~~~vg~~LSGGlDSs~iaa~a~~ 275 (467)
T TIGR01536 230 SEEDLVDELRSLLEDAVKRRLVA-DVPVGVLLSGGLDSSLVAAIARR 275 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc-CCceEEEecCChhHHHHHHHHHH
Confidence 55677777777777777766554 66788999999876666655544
No 81
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=24.52 E-value=3.4e+02 Score=25.17 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=48.0
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecc-cc-cch--HHHHHHHhcCCCCCC----CCC----C--
Q psy10371 32 DNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDE-YG-RNF--LTKLFRHNFFSHIDI----QPE----N-- 97 (219)
Q Consensus 32 ~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE-~v-~~~--~~~~~~~~l~~~~~i----~~~----~-- 97 (219)
.+++.++.|||.. ..+...+.+ .. ..+.+|++|- |. ++. +...+.+.| .++| |.. +
T Consensus 115 ~~~iavasSG~ed-svLlhl~~~----~~---~~ipV~flDTG~lFpETy~~~d~v~~~y--gl~l~~~~p~~~~~~~~~ 184 (463)
T TIGR00424 115 GNDIAIAFSGAED-VALIEYAHL----TG---RPFRVFSLDTGRLNPETYRFFDAVEKQY--GIRIEYMFPDAVEVQALV 184 (463)
T ss_pred CCCEEEEeccHHH-HHHHHHHHH----hC---CCCcEEEecCCCCCHHHHHHHHHHHHHh--CCceEEECCCcchHHHHH
Confidence 3468889997655 334443332 22 2479999999 76 554 444455554 2332 110 0
Q ss_pred -eEeCCCC-CCCHHHHHHH--HHHHHHHhCCccEEEEeecCCC
Q psy10371 98 -VHILDGN-APDLHAECVQ--YEKDIKEAGGIHLFVGGIGPDG 136 (219)
Q Consensus 98 -i~~~~~~-~~~~~~~~~~--y~~~i~~~~~~Dl~lLG~G~DG 136 (219)
.+-+..- ..+++.+|.. .+-.-+.+.++|..+-|+=.|=
T Consensus 185 ~~~G~~~~~~~~~~~CC~irKVePL~raL~~~~awitG~Rr~Q 227 (463)
T TIGR00424 185 RSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQ 227 (463)
T ss_pred HhcCcccCCcCChHHHhhHHhHHHHHHHHHhCCcEEeeecccc
Confidence 0001000 1245666532 2333333446888888987653
No 82
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=24.37 E-value=2.6e+02 Score=19.61 Aligned_cols=39 Identities=15% Similarity=-0.062 Sum_probs=32.0
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhhcCCCCCC-ceeEEeecc
Q psy10371 32 DNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFK-YVKTFNMDE 73 (219)
Q Consensus 32 ~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~-~v~~~~~DE 73 (219)
++.+.|-+.|.+.++-++.-++.... -... +++|+..|.
T Consensus 22 ~~~~~iLl~G~gD~Rhvl~Tl~~~~~---~~~~~~l~~~l~D~ 61 (100)
T PF14737_consen 22 DEDLNILLLGCGDLRHVLKTLASLPR---SYDGRKLHFTLNDI 61 (100)
T ss_pred CCCceEEEecCccHHHHHHHHHhccc---CcccceeEEEEecC
Confidence 67899999999999999999998532 2334 899999987
No 83
>PRK13794 hypothetical protein; Provisional
Probab=23.81 E-value=2.1e+02 Score=26.47 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=26.9
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 32 DNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 32 ~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
+.++.+++|||..-..++..+.+.. . .++.++++|.-.
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~---~---~~~~vvfiDTG~ 284 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKAL---G---INFPVLFNDTGL 284 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHh---C---CCeEEEEEECCC
Confidence 4579999999988777777665532 1 357788888744
No 84
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=23.78 E-value=61 Score=24.11 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=46.5
Q ss_pred eEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeec--c-cc-cch--H--HHHHHHhcCCCCCCCCCCeEeCCCCCC
Q psy10371 35 FVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMD--E-YG-RNF--L--TKLFRHNFFSHIDIQPENVHILDGNAP 106 (219)
Q Consensus 35 ~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~D--E-~v-~~~--~--~~~~~~~l~~~~~i~~~~i~~~~~~~~ 106 (219)
+.+--+|--.|.-+.+.|.+ + -+-|.+.-.- | +. .++ - +...-+.+|+.++|+++++.....++.
T Consensus 32 IrvpC~Grv~~~~il~Af~~----G---ADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~ 104 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILRAFEK----G---ADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISAP 104 (124)
T ss_pred EEccCCCccCHHHHHHHHHc----C---CCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCcc
Confidence 34444555566667777764 3 2455554433 2 11 232 1 112346777889999999988765555
Q ss_pred CHHHH---HHHHHHHHHHhC
Q psy10371 107 DLHAE---CVQYEKDIKEAG 123 (219)
Q Consensus 107 ~~~~~---~~~y~~~i~~~~ 123 (219)
+.++. ...+.+.|+++|
T Consensus 105 ~~~~fa~~~~~f~~~i~~lG 124 (124)
T PF02662_consen 105 EGKRFAEIVNEFTERIKELG 124 (124)
T ss_pred cHHHHHHHHHHHHHHHHHcC
Confidence 55554 455556666553
No 85
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=23.71 E-value=4.6e+02 Score=22.92 Aligned_cols=114 Identities=17% Similarity=0.239 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCceEEEecC---CCCHHHHHHHHHHHhhcCCCCCCceeEEeecccccchHHHHHHHhcC
Q psy10371 12 VAEWSARYVLKKITDFKPGPDNYFVLGLPT---GGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYGRNFLTKLFRHNFF 88 (219)
Q Consensus 12 ~~~~~a~~i~~~i~~~~~~~~~~~~i~lsg---Gstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v~~~~~~~~~~~l~ 88 (219)
+.+.--+.+.+.+.+.++. . -.+++|| -..|...|..|++..+... + .+. .|.|...+++.|=
T Consensus 111 is~~~~~~~l~~~~~~l~~-~--d~VvlsGSlP~g~~~d~y~~li~~~~~~g-----~-~vi-----lD~Sg~~L~~~L~ 176 (310)
T COG1105 111 ISEAELEQFLEQLKALLES-D--DIVVLSGSLPPGVPPDAYAELIRILRQQG-----A-KVI-----LDTSGEALLAALE 176 (310)
T ss_pred CCHHHHHHHHHHHHHhccc-C--CEEEEeCCCCCCCCHHHHHHHHHHHHhcC-----C-eEE-----EECChHHHHHHHc
Confidence 3444455666666664443 2 2367776 1346788999998766432 1 122 2223333343332
Q ss_pred CC-CCCCCCCeEeC----CCCCCCHHHHHHHHHHHHHHhCCccEEEEeecCCCcccccC
Q psy10371 89 SH-IDIQPENVHIL----DGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNE 142 (219)
Q Consensus 89 ~~-~~i~~~~i~~~----~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGHiaslf 142 (219)
.+ .=|.| |.+-+ .... +-.+.+..|.+.+... ++-.+|+.||.||-+...-
T Consensus 177 ~~P~lIKP-N~~EL~~~~g~~~-~~~~d~i~~a~~l~~~-g~~~ViVSlG~~Gal~~~~ 232 (310)
T COG1105 177 AKPWLIKP-NREELEALFGREL-TTLEDVIKAARELLAE-GIENVIVSLGADGALLVTA 232 (310)
T ss_pred cCCcEEec-CHHHHHHHhCCCC-CChHHHHHHHHHHHHC-CCCEEEEEecCcccEEEcc
Confidence 22 10111 11111 1111 1223455666665443 7889999999999777543
No 86
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=23.68 E-value=45 Score=27.23 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=15.3
Q ss_pred EEEEeecCCCcccccCCC
Q psy10371 127 LFVGGIGPDGHIAFNEPG 144 (219)
Q Consensus 127 l~lLG~G~DGHiaslfP~ 144 (219)
+++.|+|..||+|-=|--
T Consensus 42 v~V~G~GkSG~Igkk~Aa 59 (202)
T COG0794 42 VFVTGVGKSGLIGKKFAA 59 (202)
T ss_pred EEEEcCChhHHHHHHHHH
Confidence 799999999999976644
No 87
>KOG1205|consensus
Probab=23.64 E-value=1.3e+02 Score=25.90 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=30.4
Q ss_pred CeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEeecC
Q psy10371 97 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGP 134 (219)
Q Consensus 97 ~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 134 (219)
+++.+..+..|.++..+..+..++.+|++|+++--=|-
T Consensus 64 ~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNAG~ 101 (282)
T KOG1205|consen 64 KVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNAGI 101 (282)
T ss_pred ccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 67777776678888777888888899999999976554
No 88
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=23.47 E-value=81 Score=22.71 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=15.2
Q ss_pred HHHHHHHhCCccEEEEeecCC
Q psy10371 115 YEKDIKEAGGIHLFVGGIGPD 135 (219)
Q Consensus 115 y~~~i~~~~~~Dl~lLG~G~D 135 (219)
.+..+...+.+|++++|.|..
T Consensus 44 l~~l~~~~p~pe~liiGtG~~ 64 (110)
T PF04430_consen 44 LEELLELEPKPEVLIIGTGKR 64 (110)
T ss_dssp HHHHHCTCCS-SEEEEEETTS
T ss_pred HHHHHhccCCCcEEEEccCCc
Confidence 445555567899999999986
No 89
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=23.26 E-value=1e+02 Score=22.27 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=12.5
Q ss_pred CccEEEEeecCCCc
Q psy10371 124 GIHLFVGGIGPDGH 137 (219)
Q Consensus 124 ~~Dl~lLG~G~DGH 137 (219)
.+|++++|.|..++
T Consensus 52 ~peiliiGTG~~~~ 65 (109)
T cd05560 52 QPEVILLGTGERQR 65 (109)
T ss_pred CCCEEEEecCCCCC
Confidence 46999999999887
No 90
>PRK13981 NAD synthetase; Provisional
Probab=22.94 E-value=1.3e+02 Score=28.10 Aligned_cols=59 Identities=12% Similarity=-0.066 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 9 VSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 9 ~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
.+++.+.+...+.+.+++.. .+.++|+||||-.-.-+...+.+. +.-++|+.+.+.-+.
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~---~~~~vvglSGGiDSa~~a~la~~a-----~g~~~v~~~~~p~~~ 318 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNG---FPGVVLGLSGGIDSALVAAIAVDA-----LGAERVRAVMMPSRY 318 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcC---CCeEEEECCCCHHHHHHHHHHHHH-----hCcCcEEEEECCCCC
Confidence 56777788888888887642 346999999996544433333332 222478877777543
No 91
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=22.88 E-value=1.1e+02 Score=25.67 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCccEEEEeecC
Q psy10371 112 CVQYEKDIKEAGGIHLFVGGIGP 134 (219)
Q Consensus 112 ~~~y~~~i~~~~~~Dl~lLG~G~ 134 (219)
.+.+-+.|.+. +.|++++|||.
T Consensus 146 ~~~i~~~I~~s-~~dil~VglG~ 167 (243)
T PRK03692 146 RQALFERIHAS-GAKIVTVAMGS 167 (243)
T ss_pred HHHHHHHHHhc-CCCEEEEECCC
Confidence 34566777776 56999999995
No 92
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=22.69 E-value=1.3e+02 Score=24.87 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHH
Q psy10371 14 EWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIE 54 (219)
Q Consensus 14 ~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~ 54 (219)
+...+.+.+.+++.+++ .+.-.|.|+||++-.+....+.+
T Consensus 176 ~~~~~~i~~~i~~~l~~-~~~~~v~LtGG~a~ipgl~e~l~ 215 (239)
T TIGR02529 176 KPVYQKMASIVKRHIEG-QGVKDLYLVGGACSFSGFADVFE 215 (239)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCEEEEECchhcchhHHHHHH
Confidence 33444555555555543 44457999999988886666654
No 93
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=22.62 E-value=1.8e+02 Score=24.35 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=44.0
Q ss_pred EeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Q psy10371 5 ILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYG 75 (219)
Q Consensus 5 v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE~v 75 (219)
.|+|++-+-+.-+..|++.+++ +.| .. =+||...++.|.+.-. +.+--+.+|+.+++||=
T Consensus 32 efpDydvfrAfTS~kIIkkLK~----rdg-i~-----~dTP~~aL~klk~~gy-~eviiQ~lhiIpG~EyE 91 (265)
T COG4822 32 EFPDYDVFRAFTSRKIIKKLKE----RDG-ID-----FDTPIQALNKLKDQGY-EEVIIQPLHIIPGIEYE 91 (265)
T ss_pred hCccHHHHHHHhHHHHHHHHHh----hcC-cc-----cCCHHHHHHHHHHccc-hheeeeeeeecCchHHH
Confidence 3678887778888888888887 233 22 2679999999987432 34556888999999964
No 94
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.55 E-value=1.1e+02 Score=23.85 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=15.3
Q ss_pred HHHHHHHhCCccEEEEeecC
Q psy10371 115 YEKDIKEAGGIHLFVGGIGP 134 (219)
Q Consensus 115 y~~~i~~~~~~Dl~lLG~G~ 134 (219)
.-+.|++. +.|++++|||.
T Consensus 91 i~~~I~~~-~pdiv~vglG~ 109 (171)
T cd06533 91 IIERINAS-GADILFVGLGA 109 (171)
T ss_pred HHHHHHHc-CCCEEEEECCC
Confidence 66777776 56999999995
No 95
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=22.41 E-value=1.2e+02 Score=23.44 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=34.2
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHH
Q psy10371 2 RLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIE 54 (219)
Q Consensus 2 ~i~v~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~ 54 (219)
|+++.++.+.|...++..+++.|++- ...+.+.|.+- .+..+..-+.+
T Consensus 104 KviiI~~ad~l~~~a~NaLLK~LEep----p~~~~fiL~t~-~~~~il~TI~S 151 (162)
T PF13177_consen 104 KVIIIDEADKLTEEAQNALLKTLEEP----PENTYFILITN-NPSKILPTIRS 151 (162)
T ss_dssp EEEEEETGGGS-HHHHHHHHHHHHST----TTTEEEEEEES--GGGS-HHHHT
T ss_pred eEEEeehHhhhhHHHHHHHHHHhcCC----CCCEEEEEEEC-ChHHChHHHHh
Confidence 68899999999999999999999983 33477777664 35666665554
No 96
>PRK02628 nadE NAD synthetase; Reviewed
Probab=22.28 E-value=3.3e+02 Score=26.39 Aligned_cols=60 Identities=8% Similarity=0.041 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEee
Q psy10371 9 VSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNM 71 (219)
Q Consensus 9 ~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~ 71 (219)
.+++.+.....+.+.++... ...++|+||||..-.-..-.+++.......+=.+|+.+.+
T Consensus 341 ~~~~~~~~v~~l~~~~~~~~---~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m 400 (679)
T PRK02628 341 CYEAYNIQVSGLAQRLRATG---LKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM 400 (679)
T ss_pred HHHHHHHHHHHHHHHHHHcC---CCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC
Confidence 46677777777777777632 4469999999976554444444432211222357776666
No 97
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=22.19 E-value=3.3e+02 Score=25.73 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeEEeecc
Q psy10371 45 PLGMYKKLIEYHQQGKISFKYVKTFNMDE 73 (219)
Q Consensus 45 p~~~y~~L~~~~~~~~i~w~~v~~~~~DE 73 (219)
|..+++.|.+ ...++++++.++-+||
T Consensus 142 P~rL~~~l~~---~~~~~l~~v~~lViDE 167 (572)
T PRK04537 142 PGRLIDYVKQ---HKVVSLHACEICVLDE 167 (572)
T ss_pred HHHHHHHHHh---ccccchhheeeeEecC
Confidence 4444444432 1236788999999999
No 98
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=21.58 E-value=97 Score=21.96 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=27.0
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhhcCCCCCCc
Q psy10371 34 YFVLGLPTGGTPLGMYKKLIEYHQQGKISFKY 65 (219)
Q Consensus 34 ~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~ 65 (219)
-|+|-++.|+....+|+.|.+.-...++.|.+
T Consensus 53 m~vv~f~~~~~g~~~yq~Lrelr~~r~l~~~~ 84 (91)
T PF12829_consen 53 MCVVNFPNYEVGVSAYQKLRELRKLRELSWDK 84 (91)
T ss_pred eEEEECCChHHHHHHHHHHHHHHHHHhccCch
Confidence 48899999999999999999976666777754
No 99
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.25 E-value=3.7e+02 Score=24.00 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=34.3
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhhcCCCCCCceeEEeecc
Q psy10371 32 DNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDE 73 (219)
Q Consensus 32 ~~~~~i~lsgGstp~~~y~~L~~~~~~~~i~w~~v~~~~~DE 73 (219)
+|.-+|.=+||..|..+.+.+.+...+..++ -||-++..|.
T Consensus 70 ~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~-lkvA~V~gDd 110 (362)
T PF07287_consen 70 KGIKVITNAGGLNPAGCADIVREIARELGLS-LKVAVVYGDD 110 (362)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHHHHHhcCCC-eeEEEEECcc
Confidence 6666777799999999999988888888888 7787777776
No 100
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=20.66 E-value=4.2e+02 Score=20.76 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHH----hhcCCCCCCceeEEeecc
Q psy10371 7 DDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEY----HQQGKISFKYVKTFNMDE 73 (219)
Q Consensus 7 ~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~----~~~~~i~w~~v~~~~~DE 73 (219)
++..++.+.+...+.+..... .+..+++++-|.+-..++..+... .....++.-.+..+..++
T Consensus 123 Es~~~~~~R~~~~~~~~~~~~----~~~~vlvVsHg~~ir~l~~~~~~~~~~~~~~~~~~~~si~~l~~~~ 189 (208)
T COG0406 123 ESLADVSKRVVAALAELLRSP----PGNNVLVVSHGGVIRALLAYLLGLDLEELWRLRLDNASVTVLEFDD 189 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHhc----CCCeEEEEEChHHHHHHHHHhcCCChhhHHhcCCCCceEEEEEeeC
Confidence 567778888887777777652 222677778777777777776642 223345556666666666
No 101
>PRK06194 hypothetical protein; Provisional
Probab=20.66 E-value=4.7e+02 Score=21.41 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=26.0
Q ss_pred CeEeCCCCCCCHHHHHHHHHHHHHHhCCccEEEEeecC
Q psy10371 97 NVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGP 134 (219)
Q Consensus 97 ~i~~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~ 134 (219)
+++.+..+..+.++..+..+...+.++++|+++---|.
T Consensus 56 ~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 56 EVLGVRTDVSDAAQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 56666666566666555566666677889999887665
No 102
>cd00344 FBP_aldolase_I Fructose-bisphosphate aldolase class I. Fructose-1,6-bisphosphate aldolase is an enzyme of the glycolytic and gluconeogenic pathways found in vertebrates, plants, and bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.48 E-value=2.5e+02 Score=24.81 Aligned_cols=44 Identities=11% Similarity=-0.031 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCCCHHHHHHHHHHHh
Q psy10371 8 DVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYH 56 (219)
Q Consensus 8 ~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstp~~~y~~L~~~~ 56 (219)
+.+++++.--..+....=.+++ =++.||||.|...--..|..+.
T Consensus 233 ~~~~va~~t~~~l~~~vP~aVp-----gVvfLSGGqS~eeAt~~Lna~n 276 (328)
T cd00344 233 SHEEIAMATVTALRRTVPPAVT-----GVTFLSGGQSEEEASINLNAIN 276 (328)
T ss_pred CHHHHHHhhHHHHHhhCCCcCC-----eEEeccCCCCHHHHHHHHHHhc
Confidence 5565555554444444433333 4889999999999999998863
No 103
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=20.39 E-value=1.6e+02 Score=24.95 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHhCCccEEEEeecC-CCcccc
Q psy10371 107 DLHAECVQYEKDIKEAGGIHLFVGGIGP-DGHIAF 140 (219)
Q Consensus 107 ~~~~~~~~y~~~i~~~~~~Dl~lLG~G~-DGHias 140 (219)
|+..-+....+.|++. ++||+|.|... ||-++-
T Consensus 96 D~~~tA~~La~ai~~~-~~DLVl~G~~s~D~~tgq 129 (256)
T PRK03359 96 LPQQTASALAAAAQKA-GFDLILCGDGSSDLYAQQ 129 (256)
T ss_pred CHHHHHHHHHHHHHHh-CCCEEEEcCccccCCCCc
Confidence 5555566667777775 58999999876 665554
No 104
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=20.24 E-value=42 Score=21.68 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=8.4
Q ss_pred cCCCcccccCCCCC
Q psy10371 133 GPDGHIAFNEPGSS 146 (219)
Q Consensus 133 G~DGHiaslfP~~~ 146 (219)
-.|||.+..|||.+
T Consensus 42 ~D~Ghe~lv~PGPD 55 (58)
T PF08940_consen 42 DDTGHESLVFPGPD 55 (58)
T ss_dssp TTTTEEEEE---SS
T ss_pred cCCCcEEEEeCCCC
Confidence 45699999999953
No 105
>KOG2044|consensus
Probab=20.18 E-value=2.8e+02 Score=27.61 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=27.9
Q ss_pred CCCCCCceeEEeecccc---cch-HHHH--HHHhcCCCCCCCCCCeEeCCCC
Q psy10371 59 GKISFKYVKTFNMDEYG---RNF-LTKL--FRHNFFSHIDIQPENVHILDGN 104 (219)
Q Consensus 59 ~~i~w~~v~~~~~DE~v---~~~-~~~~--~~~~l~~~~~i~~~~i~~~~~~ 104 (219)
.+--|+++.|+++|--| -+| --.+ .++..- +-.|...|.+-+.
T Consensus 184 ~DPgWkNikvIlSDAnVPGEGEHKIM~yIR~QR~~P---~~dPNT~HclyGl 232 (931)
T KOG2044|consen 184 SDPGWKNIKVILSDANVPGEGEHKIMSYIRSQRAQP---GYDPNTHHCLYGL 232 (931)
T ss_pred CCccccceEEEEecCCCCCcchhHHHHHHHHccCCC---CCCCCceeeeecC
Confidence 45679999999999988 245 2223 344442 3356667777764
No 106
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=20.18 E-value=1.3e+02 Score=25.73 Aligned_cols=16 Identities=50% Similarity=0.794 Sum_probs=7.4
Q ss_pred CCccEEEEeecCCCccc
Q psy10371 123 GGIHLFVGGIGPDGHIA 139 (219)
Q Consensus 123 ~~~Dl~lLG~G~DGHia 139 (219)
|.-=|+-|| |.||||-
T Consensus 98 GkavllsLG-GAdghIe 113 (332)
T COG3469 98 GKAVLLSLG-GADGHIE 113 (332)
T ss_pred CcEEEEEcc-CccceEE
Confidence 333333344 5566654
Done!