RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10371
(219 letters)
>gnl|CDD|179028 PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional.
Length = 261
Score = 299 bits (767), Expect = e-103
Identities = 114/203 (56%), Positives = 144/203 (70%), Gaps = 14/203 (6%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
MRLIIL V +W+AR++ +I F P + FVLGL TG +PL YK LIE H+ GK
Sbjct: 1 MRLIILKTAEEVGKWAARHIANRINAFLPTKERPFVLGLATGSSPLETYKALIELHKAGK 60
Query: 61 ISFKYVKTFNMDEY-G---------RNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHA 110
+ F V TFN+DEY G R F+ R NFF H+DI PEN+++L+GNAPD A
Sbjct: 61 VDFSRVTTFNLDEYVGLPADHPESYRYFM----RENFFDHVDIPPENINLLNGNAPDPEA 116
Query: 111 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 170
EC +YE+ IK AGGI L + GIG +GHIAFNEPGSS ASRTR+KTL ++T AN+RFFD
Sbjct: 117 ECRRYEEKIKSAGGIDLQILGIGENGHIAFNEPGSSFASRTRIKTLTEDTRIANSRFFDG 176
Query: 171 DIKKVPKEALTVGVGTVMDAQEV 193
DI++VPK ALTVGVGT++DA+E+
Sbjct: 177 DIEQVPKYALTVGVGTILDAKEI 199
>gnl|CDD|140308 PTZ00285, PTZ00285, glucosamine-6-phosphate isomerase; Provisional.
Length = 253
Score = 288 bits (739), Expect = 2e-99
Identities = 113/203 (55%), Positives = 147/203 (72%), Gaps = 14/203 (6%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
MR++I +D VA++++ Y++K+I DFKP D FVLGLPTG TPL Y++LI +++G+
Sbjct: 1 MRIVISEDADAVADYTSNYIIKRINDFKPTSDRPFVLGLPTGSTPLPTYQELIRAYREGR 60
Query: 61 ISFKYVKTFNMDEYG----------RNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHA 110
+SF V TFNMDEY F+ + NFF H+DI+ EN HIL+G APDL
Sbjct: 61 VSFSNVVTFNMDEYVGLPRDHPQSYHYFM----KENFFDHVDIKEENRHILNGTAPDLEE 116
Query: 111 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 170
EC +YE+ I+ GGI LF+ GIG DGHIAFNEPGSSL SRTR+K+L QET++ANARFF N
Sbjct: 117 ECRRYEEKIRAVGGIDLFLAGIGTDGHIAFNEPGSSLDSRTRVKSLNQETIDANARFFGN 176
Query: 171 DIKKVPKEALTVGVGTVMDAQEV 193
DI KVP ALTVG+ T+M+A+EV
Sbjct: 177 DISKVPTMALTVGIRTIMEAREV 199
>gnl|CDD|129593 TIGR00502, nagB, glucosamine-6-phosphate isomerase. The set of
proteins recognized by This model includes a closely
related pair from Bacillus subtilis, one of which is
uncharacterized but included as a member of the
orthologous set [Central intermediary metabolism, Amino
sugars].
Length = 259
Score = 285 bits (730), Expect = 5e-98
Identities = 120/201 (59%), Positives = 154/201 (76%), Gaps = 6/201 (2%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
MRLIIL +++W+AR++ +I +FKP FVLGLPTGGTP+G YK+LIE HQ GK
Sbjct: 1 MRLIILQTYEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTPIGTYKQLIELHQAGK 60
Query: 61 ISFKYVKTFNMDEYG------RNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQ 114
ISF+ V TFNMDEY +NFF HIDI+PEN++IL+GNAPDL AEC +
Sbjct: 61 ISFQNVTTFNMDEYAGLSEEHPESYHSFMHNNFFQHIDIKPENINILNGNAPDLEAECRR 120
Query: 115 YEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKK 174
YE+ I+ GGI LF+GGIGPDGHIAFNEPGSSL SRTR+KTL ++T++AN+RFF+ D+ +
Sbjct: 121 YEEKIRSYGGIDLFMGGIGPDGHIAFNEPGSSLTSRTRIKTLTEDTIQANSRFFEGDVNQ 180
Query: 175 VPKEALTVGVGTVMDAQEVRI 195
VPK ALTVG+GT++D++EV I
Sbjct: 181 VPKYALTVGIGTILDSKEVLI 201
>gnl|CDD|238693 cd01399, GlcN6P_deaminase, GlcN6P_deaminase:
Glucosamine-6-phosphate (GlcN6P) deaminase subfamily;
GlcN6P deaminase catalyzes the reversible conversion of
GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium.
The reaction is an aldo-keto isomerization coupled with
an amination or deamination. It is the last step of the
metabolic pathway of N-acetyl-D-glucosamine-6-phosphate
(GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that
is allosterically activated by GlcNAc6P.
Length = 232
Score = 269 bits (690), Expect = 3e-92
Identities = 100/192 (52%), Positives = 130/192 (67%), Gaps = 20/192 (10%)
Query: 12 VAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNM 71
++E +A + + I + P VLGL TG TPLG+Y++LIE H++G +SF V TFN+
Sbjct: 3 MSEAAAELIAELIREKPP-----AVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNL 57
Query: 72 DEY-G---------RNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKE 121
DEY G F+ R N F HIDI+PEN+HI DGNA DL AEC +YE I E
Sbjct: 58 DEYVGLPPDHPQSYHYFM----RENLFDHIDIKPENIHIPDGNAADLEAECRRYEALIAE 113
Query: 122 AGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALT 181
AGGI L + GIG +GHI FNEPGSSL SRTR+ TL + T +ANARFFD D + VP +A+T
Sbjct: 114 AGGIDLQLLGIGENGHIGFNEPGSSLDSRTRVVTLDESTRQANARFFDGD-EDVPTQAIT 172
Query: 182 VGVGTVMDAQEV 193
+G+GT+M A+E+
Sbjct: 173 MGIGTIMKAKEI 184
>gnl|CDD|223440 COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate
isomerase/deaminase [Carbohydrate transport and
metabolism].
Length = 238
Score = 180 bits (459), Expect = 5e-57
Identities = 78/202 (38%), Positives = 109/202 (53%), Gaps = 23/202 (11%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
M+LII +D +A+ +A + K+ K VL L G TPL +Y+ L++ Q G+
Sbjct: 1 MKLIIFEDAEELAKAAAEIIADKLQAAKAE-RGRAVLALSGGSTPLALYEALVKLPQ-GQ 58
Query: 61 ISFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAEC- 112
+ + V FN+DE N+ L R N F HIDI E +H +G+A D AEC
Sbjct: 59 LDWSKVTIFNLDERVVPPDDPESNY--GLMRRNLFDHIDIPAEFIH--NGDASDPDAECA 114
Query: 113 VQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSS-LASRTRLKTLAQETLEANARFFDND 171
+YE + AGG L + G+G DGHIA PG+ L S T T EAN+R F D
Sbjct: 115 ARYEAKLPSAGGFDLILLGMGEDGHIASLFPGTPALDSAT--------TEEANSRVFVGD 166
Query: 172 IKKVPKEALTVGVGTVMDAQEV 193
KVPKE +T+ + T++DA+EV
Sbjct: 167 SPKVPKERITLTLPTILDAKEV 188
>gnl|CDD|235005 PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein;
Validated.
Length = 652
Score = 169 bits (430), Expect = 3e-49
Identities = 75/172 (43%), Positives = 101/172 (58%), Gaps = 17/172 (9%)
Query: 34 YFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEY----------GRNFLTKLF 83
VLGL TG +P+G+Y +LI H++ +SFK V TFN+DEY F+
Sbjct: 60 PCVLGLATGSSPIGVYAELIRMHREEGLSFKNVITFNLDEYYPMQPDSLQSYHRFM---- 115
Query: 84 RHNFFSHIDIQPENVHILDGNAP--DLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFN 141
+ N F H+DI PEN+HI DG P ++ C YE+ I+ AGGI + GIG GHI FN
Sbjct: 116 KENLFDHVDIPPENIHIPDGTIPKEEIDEYCRDYEEKIEAAGGIDFQLLGIGRTGHIGFN 175
Query: 142 EPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEV 193
EPGS SRTRL TL T A F + VP++A+T+GVGT++ A+ +
Sbjct: 176 EPGSGRNSRTRLVTLDHITRRDAASDF-FGEENVPRKAITMGVGTILKARRI 226
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate
Isomerase family; includes type A ribose 5-phosphate
isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P)
deaminase, and 6-phosphogluconolactonase (6PGL). RPI
catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to
D-fructose-6-phosphate (Fru6P) and ammonium, the last
step of the metabolic pathway of
N-acetyl-D-glucosamine-6-phosphate. 6PGL converts
6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the
second step of the oxidative phase of the pentose
phosphate pathway.
Length = 169
Score = 97.4 bits (242), Expect = 2e-25
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 8/128 (6%)
Query: 13 AEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMD 72
A+ + +++ K + V+GL TG TP YK L E ++G + F D
Sbjct: 1 AKEALKFIEDKXEKL-LEEKDDMVIGLGTGSTPAYFYKLLGEKLKRG--EISDIVGFPTD 57
Query: 73 EY-----GRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHL 127
E + + F H I NVH +D + P A + + + I L
Sbjct: 58 ERYVPLDSDQSNFRQAKLLAFEHDIIPASNVHYVDTSLPIEKACEKYEREILDQVDAIDL 117
Query: 128 FVGGIGPD 135
V G G
Sbjct: 118 AVDGAGYR 125
>gnl|CDD|183470 PRK12358, PRK12358, putative 6-phosphogluconolactonase;
Provisional.
Length = 239
Score = 81.0 bits (200), Expect = 1e-18
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 26/204 (12%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
M++II D ++ +A ++L ++ L + G TP GMY+ LI +GK
Sbjct: 1 MKIIITKDYEEMSRVAAHHLLGYMSK-----TKRVNLAITAGSTPKGMYEYLIT-LVKGK 54
Query: 61 ISFKYVKTFNMDE--------YGRNFLTKLFRHNFFSHIDIQPENVHILD-GNAPDLHAE 111
+ V +N DE G +T L R+ FF+ I+ EN+H L N
Sbjct: 55 AWYDNVHYYNFDEIPFRGKEGEGVT-ITNL-RNLFFTPAGIKEENIHKLTIDNY------ 106
Query: 112 CVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPG-SSLASRTRLKTLAQETLEANARFFDN 170
++++ + GG+ L V G+G DGH N PG + T + E ++ A
Sbjct: 107 -REHDQKLARDGGLDLVVLGLGADGHFCGNLPGTTHFHDETVEVPIQGEMVDIVAHGELG 165
Query: 171 -DIKKVPKEALTVGVGTVMDAQEV 193
D VP +T+G ++M A+ +
Sbjct: 166 GDFSLVPDSYVTMGPKSIMAAKNL 189
>gnl|CDD|182064 PRK09762, PRK09762, galactosamine-6-phosphate isomerase;
Provisional.
Length = 232
Score = 76.0 bits (187), Expect = 6e-17
Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 15/199 (7%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
L +++ + ++E ++ Y+L I KP V+ L TG TPL Y L+E Q +
Sbjct: 1 QTLQQVENYTALSERASEYLLAVIRS-KPD----AVICLATGATPLLTYHYLVEKIHQQQ 55
Query: 61 ISFKYVKTFNMDEYGRNFLTK------LFRHNFFSHIDIQPENVHILDGNAPDLHAECVQ 114
+ + +DE+ LT + + + ++ + + + EC +
Sbjct: 56 VDVSQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEIN-ETECER 114
Query: 115 YEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKK 174
I GG+ L V G+G +GH+ NEPG SL + L T + +
Sbjct: 115 VTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAG---R 171
Query: 175 VPKEALTVGVGTVMDAQEV 193
+T+G+ +++A+EV
Sbjct: 172 PVTRGITLGLKDILNAREV 190
>gnl|CDD|216349 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate
isomerases/6-phosphogluconolactonase.
Length = 191
Score = 61.0 bits (149), Expect = 1e-11
Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 25/147 (17%)
Query: 12 VAEWSARYVLKKITDF--KPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTF 69
+AE A + ++ + G VL L G TP +Y+ L + + V F
Sbjct: 1 LAEALAERIANELLAAIAERGR---AVLALSGGSTPKPLYELLAS--APDDLDWSRVHVF 55
Query: 70 NMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEA 122
DE N+ KL R ++ I NVH A +YE++++
Sbjct: 56 WGDERCVPPDHPDSNY--KLAREALLDNVPIPAANVH-----PIPPEAAAERYERELRGL 108
Query: 123 GGIH----LFVGGIGPDGHIAFNEPGS 145
G L + G+G DGH A PGS
Sbjct: 109 FGPEPPFDLVLLGMGEDGHTASLFPGS 135
>gnl|CDD|238694 cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily;
6PGL catalyzes the second step of the oxidative phase of
the pentose phosphate pathway, the hydrolyzation of
6-phosphoglucono-1,5-lactone (delta form) to
6-phosphogluconate. 6PGL is thought to guard against the
accumulation of the delta form of the lactone, which may
be toxic through its reaction with endogenous cellular
nucleophiles.
Length = 219
Score = 59.1 bits (144), Expect = 7e-11
Identities = 43/157 (27%), Positives = 61/157 (38%), Gaps = 28/157 (17%)
Query: 12 VAEWSARYVLKKITDF--KPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTF 69
+AE A + + + K G F L L G TP +Y+ L + + V F
Sbjct: 3 LAEALADRIAEALAAAIAKRG---RFSLALSGGSTPKPLYELL---AAAPALDWSKVHVF 56
Query: 70 NMDE-Y------GRNFLTKLFRHNFFSHIDIQPENVH-ILDGNAPDLHAECVQYEKDIKE 121
DE N+ +L R SH+ I N+H I P+ A YEK+++
Sbjct: 57 LGDERCVPPDDPDSNY--RLAREALLSHVAIPAANIHPIPTELGPEDAAA--AYEKELRA 112
Query: 122 AGG----IHLFVGGIGPDGHIA--FNEPGSSLASRTR 152
G L + G+GPDGH A F PG
Sbjct: 113 LFGGVPPFDLVLLGMGPDGHTASLF--PGHPALLEET 147
>gnl|CDD|233308 TIGR01198, pgl, 6-phosphogluconolactonase. This enzyme of the
pentose phosphate pathway is often found as a part of a
multifunctional protein with [Energy metabolism, Pentose
phosphate pathway].
Length = 233
Score = 49.3 bits (118), Expect = 2e-07
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 17/117 (14%)
Query: 35 FVLGLPTGGTPLGMYKKLIEYHQQGK---ISF---KYVKTFNMDEYGRNFLTKLFRHNFF 88
F L L G +P+ + + L + +YV + D N L R
Sbjct: 30 FSLALSGGRSPIALLEALAAQPLDWSRIHLFLGDERYVPLDHAD---SNT--GLAREALL 84
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQYEKDIKEA------GGIHLFVGGIGPDGHIA 139
+ I N+H + D+ YE+++ A L + G+GPDGH A
Sbjct: 85 DRVAIPASNIHPMPTELSDIEEAAELYEQELAAAFQPIVFPVFDLLLLGMGPDGHTA 141
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis].
Length = 513
Score = 32.5 bits (74), Expect = 0.17
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 22 KKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYGRNFLTK 81
K+I K G D TP +L++ ++GK+ V+T +DE R L
Sbjct: 142 KQIEALKRGVDIVV-------ATPG----RLLDLIKRGKLDLSGVETLVLDEADR-MLDM 189
Query: 82 LFRHNFFSHIDIQPENVHIL 101
F + + P + L
Sbjct: 190 GFIDDIEKILKALPPDRQTL 209
>gnl|CDD|234861 PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.
Length = 552
Score = 32.3 bits (75), Expect = 0.17
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIG-PDGHIAFNEPG--S 145
S +I P N+H+ + A+ V ++ ++ AGG+ IG DG IA G
Sbjct: 39 SWNEITPCNIHLNE------LADAV--KEGVRAAGGVPFEFNTIGVSDG-IAMGHEGMKY 89
Query: 146 SLASR 150
SL SR
Sbjct: 90 SLVSR 94
>gnl|CDD|163175 TIGR03178, allantoinase, allantoinase. This enzyme carries out the
first step in the degradation of allantoin, a
ring-opening hydrolysis. The seed members of this model
are all in the vicinity of other genes involved in the
processes of xanthine/urate/allantoin catabolism.
Although not included in the seed, many eukaryotic
homologs of this family are included above the trusted
cutoff. Below the noise cutoff are related
hydantoinases.
Length = 443
Score = 32.4 bits (74), Expect = 0.19
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 94 QPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPG 144
+ +V + G + + + I +AGG+ +F G + D H+ NEPG
Sbjct: 16 READVGVKGGKIAAIGPDILGPAAKIIDAGGLVVFPGVV--DTHVHINEPG 64
>gnl|CDD|166001 PLN02360, PLN02360, probable 6-phosphogluconolactonase.
Length = 268
Score = 31.4 bits (71), Expect = 0.34
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 25/127 (19%)
Query: 34 YFVLGLPTGGTPLGMYKKLIE--YHQQGKISFKYVKTFNMDE--YGRNFLT---KLFRHN 86
F + L +GG+ + KL E Y++ + Y+ F DE +N KL +
Sbjct: 43 VFAIAL-SGGSLISFMGKLCEAPYNKTVDWAKWYI--FWADERVVAKNHADSNYKLAKDG 99
Query: 87 FFSHIDIQPENVHILDGNAPDLHAECVQYE--------------KDIKEAGGIHLFVGGI 132
S + + P +V+ ++ A YE DI + L + G+
Sbjct: 100 LLSKVPVVPSHVYSINDTVTAEEA-ATDYEFAIRQLVKTRTIGVSDISDCPKFDLILLGM 158
Query: 133 GPDGHIA 139
G DGH+A
Sbjct: 159 GSDGHVA 165
>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function
prediction only].
Length = 517
Score = 31.5 bits (72), Expect = 0.34
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 23/98 (23%)
Query: 60 KISFKYVKTFNMDEYGRN----FLTKLFRHNFFSHIDIQPENVHI--------------- 100
I+ + E FL +L R FF H D P N+ +
Sbjct: 255 DIAALKSAGIDRKELAELLVRAFLRQLLRDGFF-HADPHPGNILVRSDGRIVLLDFGIVG 313
Query: 101 -LDGNAPDLHAECVQ--YEKDIKEAGGIHLFVGGIGPD 135
LD AE + +D +H+ +G + PD
Sbjct: 314 RLDPKFRRYLAELLLAFLNRDYDRVAELHVELGYVPPD 351
>gnl|CDD|182951 PRK11085, PRK11085, magnesium/nickel/cobalt transporter CorA;
Provisional.
Length = 316
Score = 30.5 bits (69), Expect = 0.62
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 141 NEPGSSLASRTRLKTLAQETLEANARFFDND 171
+E G SLA+R L E +EA+ARFF+++
Sbjct: 44 SELGQSLATRPEL-----EDIEASARFFEDE 69
>gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional.
Length = 451
Score = 29.3 bits (66), Expect = 1.4
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 117 KDIKEAGGIHLFVGGIGPDGHIAFNEPG 144
++I +A G+++F G I D H+ FNEPG
Sbjct: 42 REIIDADGLYVFPGMI--DVHVHFNEPG 67
>gnl|CDD|227650 COG5346, COG5346, Predicted membrane protein [Function unknown].
Length = 136
Score = 28.3 bits (63), Expect = 1.7
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 55 YHQQGKISFKYVKTFNMDEYGRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHA 110
+ + +++ KTF+ +E NF K F H + N I + A
Sbjct: 6 FVKNNRLNKGLAKTFSSNEPDNNFYRKKFEHILPPPDLLSQYN-SIYPNTLQRIMA 60
>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB;
Reviewed.
Length = 537
Score = 29.5 bits (67), Expect = 1.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 78 FLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQY 115
F T++FR FF H D+ P N+ + + D E +Y
Sbjct: 272 FFTQVFRDGFF-HADMHPGNIFV----SYD-PPENPRY 303
>gnl|CDD|215489 PLN02902, PLN02902, pantothenate kinase.
Length = 876
Score = 29.1 bits (65), Expect = 2.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GRNFLTKLFRHNFFSHIDIQPENVHI 100
G NFL K RH F+H++ + E V I
Sbjct: 183 GANFLLKAIRHEAFTHMEGEKEFVQI 208
>gnl|CDD|223207 COG0129, IlvD, Dihydroxyacid dehydratase/phosphogluconate
dehydratase [Amino acid transport and metabolism /
Carbohydrate transport and metabolism].
Length = 575
Score = 27.9 bits (63), Expect = 5.4
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 89 SHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPG--SS 146
S+ D+ P + H+ D L E I+EAGG+ + G I IA G S
Sbjct: 50 SYNDMVPGHQHLKDL--AQLVKE------GIREAGGVPVEFGTIAVCDGIAMGHDGMPYS 101
Query: 147 LASR 150
L SR
Sbjct: 102 LPSR 105
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 27.6 bits (62), Expect = 5.4
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 138 IAFNEPGSSLASR 150
IAF+EP SSL++R
Sbjct: 162 IAFDEPTSSLSAR 174
>gnl|CDD|220428 pfam09826, Beta_propel, Beta propeller domain. Members of this
family comprise secreted bacterial proteins containing
C-terminal beta-propeller domain distantly related to
WD-40 repeats.
Length = 521
Score = 27.6 bits (62), Expect = 5.9
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 53 IEYHQQGKISFKYVKTFNMDEYGRNFLTKLFRHNFFSHIDIQPENVHILDGN 104
+ Y G++ + + F+MDEY N + D NV++LD +
Sbjct: 261 VTYVGSGEVPGRLLNQFSMDEYNGYLRVATTVGNTWREGDTSTNNVYVLDED 312
>gnl|CDD|176044 cd08399, C2_PI3K_class_I_gamma, C2 domain present in class I gamma
phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA
phosphatidylinositol (PtdIns) 3-kinases) regulate cell
processes such as cell growth, differentiation,
proliferation, and motility. PI3Ks work on
phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain. The
members here are class I, gamma isoform PI3Ks and
contain both a Ras-binding domain and a p85-binding
domain. Class II PI3Ks contain both of these as well as
a PX domain, and a C-terminal C2 domain containing a
nuclear localization signal. C2 domains fold into an
8-standed beta-sandwich that can adopt 2 structural
arrangements: Type I and Type II, distinguished by a
circular permutation involving their N- and C-terminal
beta strands. Many C2 domains are Ca2+-dependent
membrane-targeting modules that bind a wide variety of
substances including bind phospholipids, inositol
polyphosphates, and intracellular proteins. Most C2
domain proteins are either signal transduction enzymes
that contain a single C2 domain, such as protein kinase
C, or membrane trafficking proteins which contain at
least two C2 domains, such as synaptotagmin 1. However,
there are a few exceptions to this including RIM
isoforms and some splice variants of piccolo/aczonin and
intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 178
Score = 27.2 bits (60), Expect = 5.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 147 LASRTRLKTLAQETLEANARFFDNDIKKVPKEAL 180
RT K +E L FD IK +PK AL
Sbjct: 46 CQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGAL 79
>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. CysM differs from CysK in
that it can also use thiosulfate instead of sulfide, to
produce cysteine thiosulfonate instead of cysteine.
Alternate name: O-acetylserine (thiol)-lyase [Amino acid
biosynthesis, Serine family].
Length = 290
Score = 27.6 bits (61), Expect = 6.1
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 5 ILDDVSNVAEWSARYVLK--KITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEY 55
+LD +N A Y +I G +FV + T GT +G+ + L E
Sbjct: 135 LLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQ 187
>gnl|CDD|215555 PLN03063, PLN03063, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 797
Score = 27.5 bits (61), Expect = 6.6
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 54 EYHQQGKISFKYVKTFNMDEYGRNFLTKL 82
E + + +F+YVKT + ++ +F+++L
Sbjct: 447 ERETRHRHNFQYVKTHSAQKWADDFMSEL 475
>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase. Benzyl
alcohol dehydrogenase is similar to liver alcohol
dehydrogenase, but has some amino acid substitutions
near the active site, which may determine the enzyme's
specificity of oxidizing aromatic substrates. Also
known as aryl-alcohol dehydrogenases, they catalyze the
conversion of an aromatic alcohol + NAD+ to an aromatic
aldehyde + NADH + H+. NAD(P)(H)-dependent
oxidoreductases are the major enzymes in the
interconversion of alcohols and aldehydes, or ketones.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which has a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. A GxGxxG motif
after the first mononucleotide contact half allows the
close contact of the coenzyme with the ADH backbone.
The N-terminal catalytic domain has a distant homology
to GroES. These proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and have 2 tightly bound zinc atoms per
subunit, a catalytic zinc at the active site and a
structural zinc in a lobe of the catalytic domain.
NAD(H) binding occurs in the cleft between the catalytic
and coenzyme-binding domains at the active site, and
coenzyme binding induces a conformational closing of
this cleft. Coenzyme binding typically precedes and
contributes to substrate binding. In human ADH
catalysis, the zinc ion helps coordinate the alcohol,
followed by deprotonation of a histidine, the ribose of
NAD, a serine, then the alcohol, which allows the
transfer of a hydride to NAD+, creating NADH and a
zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 365
Score = 27.1 bits (61), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 51 KLIEYHQQGKISF-KYVKTFNMDEY 74
+LIE ++QGK F K V + ++
Sbjct: 323 RLIELYRQGKFPFDKLVTFYPFEDI 347
>gnl|CDD|238733 cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A
(vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Not much is known about the function of the
members of this subgroup. All members of this subgroup
however have a conserved MIDAS motif. .
Length = 206
Score = 27.0 bits (60), Expect = 7.8
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 37 LGLPTGGTPLGMYKKLIE-YHQQGKISFKYVKT 68
L PTG TPL Y G+++ + T
Sbjct: 110 LQTPTGWTPLAAALAEAAAYVDPGRVNVVVLIT 142
>gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase
(ALN); L-Hydantoinases are a member of the
dihydropyrimidinase family, which catalyzes the
reversible hydrolytic ring opening of dihydropyrimidines
and hydantoins (five-membered cyclic diamides used in
biotechnology). But L-HYDs differ by having an L-enantio
specificity and by lacking activity on possible natural
substrates such as dihydropyrimidines. Allantoinase
catalyzes the hydrolytic cleavage of the five-member
ring of allantoin (5-ureidohydantoin) to form allantoic
acid.
Length = 447
Score = 27.3 bits (61), Expect = 8.0
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 122 AGGIHLFVGGIGPDGHIAFNEPG 144
AGG+ + G I D H+ NEPG
Sbjct: 45 AGGLVVMPGLI--DTHVHINEPG 65
>gnl|CDD|215439 PLN02819, PLN02819, lysine-ketoglutarate reductase/saccharopine
dehydrogenase.
Length = 1042
Score = 27.1 bits (60), Expect = 8.4
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 87 FFSH-IDIQPENVHILD 102
FFSH QPEN+ +LD
Sbjct: 95 FFSHTHKAQPENMPLLD 111
>gnl|CDD|234255 TIGR03557, F420_G6P_family, F420-dependent oxidoreductase, G6PDH
family. Members of this protein family include
F420-dependent glucose-6-phosphate dehydrogenases
(TIGR03554) and related proteins. All members of this
family come from species that synthesize coenzyme F420,
with the exception of those that belong to TIGR03885, a
clade within this family in which cofactor binding may
instead be directed to FMN [Unknown function, Enzymes of
unknown specificity].
Length = 316
Score = 27.0 bits (60), Expect = 8.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 93 IQPENV--HILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPD 135
++ E+V I G PD H E V ++ +AG + + IGPD
Sbjct: 257 VREEDVAASIPCGPDPDRHVEAV---REYVDAGFDEVALVQIGPD 298
>gnl|CDD|223829 COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [DNA replication, recombination,
and repair / Intracellular trafficking and secretion].
Length = 350
Score = 26.9 bits (60), Expect = 9.1
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 5 ILDDVSNVAEWSARYVLKKITDF-KPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKIS 62
IL++++ + Y + P L TG T + L+E +GK+
Sbjct: 282 ILEELNALLVLLYPYTFLALLANLGDEPKEIDRLASCTGLTIAQVLAWLLELELEGKVK 340
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 27.0 bits (59), Expect = 9.8
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 47 GMYKKLIEYHQQGKISFKYVKTFN-----MDEYGRNFLTKLFRHNFFS 89
G+ K+I+ + FK + +N + E ++FL + RH F
Sbjct: 607 GITNKIIDSTRLYGACFKNIIIYNAIISGIHEKIKHFLKLMPRHGFLL 654
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 26.9 bits (60), Expect = 10.0
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 75 GRNFLTKLF--RHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKE 121
G N LT + R I + P N IL P + Q + ++ +
Sbjct: 680 GDNPLTAVHVARE---CGI-VNPSNTLILAEAEPPESGKPNQIKFEVID 724
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.141 0.422
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,698,139
Number of extensions: 1115624
Number of successful extensions: 1014
Number of sequences better than 10.0: 1
Number of HSP's gapped: 985
Number of HSP's successfully gapped: 49
Length of query: 219
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 126
Effective length of database: 6,812,680
Effective search space: 858397680
Effective search space used: 858397680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)