RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10371
(219 letters)
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic
effects, aldose-ketose isomerase multiple conformers,
isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP:
c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A
1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Length = 266
Score = 287 bits (737), Expect = 5e-99
Identities = 117/205 (57%), Positives = 149/205 (72%), Gaps = 14/205 (6%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
MRLI L V +W+AR+++ +I FKP D FVLGLPTGGTP+ YK L+E H+ G+
Sbjct: 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQ 60
Query: 61 ISFKYVKTFNMDEYG----------RNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHA 110
+SFK+V TFNMDEY +F+ NFF H+DI EN+++L+GNAPD+ A
Sbjct: 61 VSFKHVVTFNMDEYVGLPKEHPESYYSFM----HRNFFDHVDIPAENINLLNGNAPDIDA 116
Query: 111 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 170
EC QYE+ I+ G IHLF+GG+G DGHIAFNEP SSLASRTR+KTL +T AN+RFFDN
Sbjct: 117 ECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDN 176
Query: 171 DIKKVPKEALTVGVGTVMDAQEVRI 195
D+ +VPK ALTVGVGT++DA+EV I
Sbjct: 177 DVNQVPKYALTVGVGTLLDAEEVMI 201
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI,
infectious disease, LYME DI non-hodgkin lymphomas,
neuroborreliosis; 2.20A {Borrelia burgdorferi}
Length = 289
Score = 283 bits (726), Expect = 4e-97
Identities = 120/205 (58%), Positives = 153/205 (74%), Gaps = 14/205 (6%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
MRLII ++++W+A +V +KI +F P +N F+LGLPTG +P+GMYK LIE ++ K
Sbjct: 22 MRLIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELNKNKK 81
Query: 61 ISFKYVKTFNMDEYG----------RNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHA 110
ISF+ V TFNMDEY +F+ +NFFSHIDI+ EN++IL+GNA +L
Sbjct: 82 ISFQNVITFNMDEYIGIEENHPESYHSFM----WNNFFSHIDIKKENINILNGNASNLKK 137
Query: 111 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 170
EC +YEK IK GGI LFVGGIGPDGHIAFNEPGSSL SRTR+KTL Q+T+ AN+RFF+
Sbjct: 138 ECEEYEKKIKSFGGIMLFVGGIGPDGHIAFNEPGSSLTSRTRIKTLTQDTIIANSRFFEG 197
Query: 171 DIKKVPKEALTVGVGTVMDAQEVRI 195
D+ KVPK ALTVG+GT+MD+QEV I
Sbjct: 198 DVNKVPKNALTVGIGTIMDSQEVLI 222
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme,
conformational disorder, conformational differences,
hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP:
c.124.1.1
Length = 289
Score = 280 bits (718), Expect = 6e-96
Identities = 132/203 (65%), Positives = 154/203 (75%), Gaps = 14/203 (6%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
M+LIIL+ S +EW+A+Y+ +I F PGP+ YF LGLPTG TPLG YKKLIEY++ G
Sbjct: 1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD 60
Query: 61 ISFKYVKTFNMDEYG----------RNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHA 110
+SFKYVKTFNMDEY +F+ +NFF HIDI PEN HILDGNA DL A
Sbjct: 61 LSFKYVKTFNMDEYVGLPRDHPESYHSFM----WNNFFKHIDIHPENTHILDGNAVDLQA 116
Query: 111 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 170
EC +E+ IK AGGI LFVGGIGPDGHIAFNEPGSSL SRTR+KTLA +T+ ANARFFD
Sbjct: 117 ECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDG 176
Query: 171 DIKKVPKEALTVGVGTVMDAQEV 193
++ KVP ALTVGVGTVMDA+EV
Sbjct: 177 ELTKVPTMALTVGVGTVMDAREV 199
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition,
fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis}
PDB: 2bkv_A*
Length = 242
Score = 261 bits (668), Expect = 6e-89
Identities = 76/203 (37%), Positives = 115/203 (56%), Gaps = 20/203 (9%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
M+++ +++ +AR I + VLGL TGGTP G Y++LI HQ
Sbjct: 1 MKVMECQTYEELSQIAARITADTIKEKPD-----AVLGLATGGTPEGTYRQLIRLHQTEN 55
Query: 61 ISFKYVKTFNMDEYG----------RNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHA 110
+SF+ + T N+DEY ++ FF HID +P I +GNA DL A
Sbjct: 56 LSFQNITTVNLDEYAGLSSDDPNSYHFYM----NDRFFQHIDSKPSRHFIPNGNADDLEA 111
Query: 111 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 170
EC +YE+ + G + + GIG +GHI FNEPG+S SRT + TL ++T +ANAR+F +
Sbjct: 112 ECRRYEQLVDSLGDTDIQLLGIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARYFPS 171
Query: 171 DIKKVPKEALTVGVGTVMDAQEV 193
I VPK+ALT+G+ T++ ++ +
Sbjct: 172 -IDSVPKKALTMGIQTILSSKRI 193
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET:
BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Length = 234
Score = 246 bits (629), Expect = 4e-83
Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 28/203 (13%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
M+ I + + + ++ + R + ++IT LGL TG TPL +YK++ E
Sbjct: 2 MKTIKVKNKTEGSKVAFRMLEEEITFGA------KTLGLATGSTPLELYKEIRE----SH 51
Query: 61 ISFKYVKTFNMDEY-G---------RNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHA 110
+ F + + N+DEY G F+ + N F+ + ++ +G A DL
Sbjct: 52 LDFSDMVSINLDEYVGLSADDKQSYAYFM----KQNLFAAKPF--KKSYLPNGLAADLAK 105
Query: 111 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 170
E Y++ + + I L + GIG + HI FNEPG++ +S+T L L T+ AN+RFF+
Sbjct: 106 ETEYYDQILAQ-YPIDLQILGIGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFEK 164
Query: 171 DIKKVPKEALTVGVGTVMDAQEV 193
+ VPK+A+++G+ ++M A+ +
Sbjct: 165 -AEDVPKQAISMGLASIMSAKMI 186
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase,
malaria, carbohydrate metabolism, glucose metabolism,
NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium
vivax}
Length = 312
Score = 158 bits (401), Expect = 9e-48
Identities = 39/225 (17%), Positives = 81/225 (36%), Gaps = 36/225 (16%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDN-YFVLGLPTGGTPLGMYKKLIEYHQQG 59
++ + D+++ + SA Y+ +I + + + + V+GL G TP+ +YK + +
Sbjct: 27 VKYLEAKDLTDFNQKSAYYICHQIAEKQLSKEGGHVVIGLSGGKTPIDVYKNIAL-VKDI 85
Query: 60 KISFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAEC 112
KI + F +DE N+ + F S + E ++ D + ++
Sbjct: 86 KIDTSKLIFFIIDERYKRDDHKFSNY--NNIKFLFESLKINEKEQLYRPDTSK-NIVECV 142
Query: 113 VQYEKDIKEA----GGIHLFVGGIGPDGHIAFNEPGSS--------------------LA 148
Y + IK + + + G+G D HIA P +A
Sbjct: 143 RDYNEKIKNMVKKYTKVDIAILGMGSDFHIASLFPNIFFNIYMNNYQNSYIYDESSIKVA 202
Query: 149 SRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEV 193
+ L +F ++ +TV + + +A
Sbjct: 203 NSNDTSDNDNLDLLKEYVYFTTTNNFDVRKRITVSLDLLGNASSK 247
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, carboxylic
ester hydrolase; 2.10A {Mycobacterium smegmatis}
Length = 248
Score = 151 bits (383), Expect = 9e-46
Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 36/211 (17%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDF--KPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQ 58
+ D + + + ++ I+ + G + L GGT +G+ K++ E
Sbjct: 8 TVIERHADTAALVAAAGDRLVDAISSAIGERGQ---ATIVLTGGGTGIGLLKRVRERS-- 62
Query: 59 GKISFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDG----NAPD 107
G+I + V + DE RN K R HI I P NVH + D
Sbjct: 63 GEIDWSKVHIYWGDERFVPQDDDERND--KQAREALLDHIGIPPVNVHAMAASDGEFGDD 120
Query: 108 LHAECVQYEKDIKEA-----GGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLE 162
L A Y + + G + + G+G +GH+ P + T +
Sbjct: 121 LEAAAAGYAQLLSANFDSSVPGFDVHLLGMGGEGHVNSLFPDTDAVRETERLVVG----- 175
Query: 163 ANARFFDNDIKKVPKEALTVGVGTVMDAQEV 193
+D K P +T+ + V +++EV
Sbjct: 176 ------VSDSPKPPPRRITLTLPAVQNSREV 200
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A
{Mycobacterium abscessus}
Length = 251
Score = 137 bits (348), Expect = 2e-40
Identities = 37/213 (17%), Positives = 71/213 (33%), Gaps = 38/213 (17%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDF--KPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQ 58
+ D + + + IT + G ++ L GGT + + K L +
Sbjct: 8 TIIEKYADTDALVTAAGDRLASAITGALAERGK---AMIVLTGGGTGIALLKHLRDVAS- 63
Query: 59 GKISFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDG----NAPD 107
+ + V F D+ RN H++ N+H + D
Sbjct: 64 -GLDWTNVHVFWGDDRYVPKTDPERNA--WQAWEALLEHVNFPLRNMHAMPNSESEYGTD 120
Query: 108 LHAECVQYEKDIKEAG-------GIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQET 160
L A + YE+ + + + G+G +GHI P + T+ +A
Sbjct: 121 LDAAALAYEQLLAANAEPGQDCPAFDVHLLGMGGEGHINSLFPHTDAVKETQRLVVA--- 177
Query: 161 LEANARFFDNDIKKVPKEALTVGVGTVMDAQEV 193
D K P + +T+ + + ++EV
Sbjct: 178 --------VPDSPKPPPQRITLTLPAIQRSREV 202
>1y89_A DEVB protein; structural genomics, protein structure initiative,
PSI, MIDW center for structural genomics, MCSG; HET:
2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Length = 238
Score = 130 bits (328), Expect = 1e-37
Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 35/207 (16%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
+ I V + A +L +P + L G TP ++K L
Sbjct: 2 INHKIFPTADAVVKSLADDMLAYSQQGQP-----VHISLSGGSTPKMLFKLLASQPYAND 56
Query: 61 ISFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECV 113
I +K + + DE N+ FS I++ +N+H + G + AE
Sbjct: 57 IQWKNLHFWWGDERCVAPDDAESNY--GEANALLFSKINMPAQNIHRILGEN-EPQAEAE 113
Query: 114 QYEKDIKEA-------GGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANAR 166
++ + + + G+G DGH A PG + + L +A
Sbjct: 114 RFAQAMAHVIPTENGTPVFDWILLGVGADGHTASLFPGQTDYADANLSVVA--------- 164
Query: 167 FFDNDIKKVPKEALTVGVGTVMDAQEV 193
+ + ++ + A+ +
Sbjct: 165 ----SHPESGQLRVSKTAKVLQAAKRI 187
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate
pathway, hydrolase, zinc binding site; HET: FLC; 2.00A
{Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Length = 266
Score = 128 bits (323), Expect = 1e-36
Identities = 38/221 (17%), Positives = 66/221 (29%), Gaps = 41/221 (18%)
Query: 2 RLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKI 61
+ + ++ R +++ I + L G TP Y +L + H
Sbjct: 6 TISVHATPQELSAAGCRKIVEIIEA-SGSQQWPLSIALAGGSTPKMTYARLHDEHLNLLR 64
Query: 62 SFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAP-------- 106
+ ++ F DE N+ + R I + V D +A
Sbjct: 65 EKRALRFFMGDERMVPADSTDSNY--NMAREVLLHDIPD--DLVFPFDTSAVTPSAEATS 120
Query: 107 -DLHAECVQYEKDIKEA-------------GGIHLFVGGIGPDGHIAFNEPGSSLASRTR 152
D Y K + + + G+G DGH A PGS T
Sbjct: 121 ADAMRVAEAYGKQLASLLPLKSVGEAGPKVPVFDVVLLGLGSDGHTASIFPGSQAEKETD 180
Query: 153 LKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEV 193
+ F ++ K +T+ T+M A+ V
Sbjct: 181 -------GKVVVSVGFPSETMKPKVWRVTLSPATIMQARNV 214
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid,
hydrolase, structural genomics; 2.15A {Mycobacterium
tuberculosis}
Length = 268
Score = 125 bits (317), Expect = 1e-35
Identities = 45/214 (21%), Positives = 75/214 (35%), Gaps = 40/214 (18%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDF--KPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQ 58
+ I D + + + ++ I G ++ L GG + + + L QQ
Sbjct: 24 SSIEIFPDSDILVAAAGKRLVGAIGAAVAARGQ---ALIVLTGGGNGIALLRYLSAQAQQ 80
Query: 59 GKISFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDG----NAPD 107
I + V F DE RN K R +H+DI VH + D
Sbjct: 81 --IEWSKVHLFWGDERYVPEDDDERNL--KQARRALLNHVDIPSNQVHPMAASDGDFGGD 136
Query: 108 LHAECVQYEKDIKEAGGIHLFVG-------GIGPDGHIAFNEPGSS-LASRTRLKTLAQE 159
L A + YE+ + + G+GP+GHI P S + TR+
Sbjct: 137 LDAAALAYEQVLAASAAPGDPAPNFDVHLLGMGPEGHINSLFPHSPAVLESTRMVVAV-- 194
Query: 160 TLEANARFFDNDIKKVPKEALTVGVGTVMDAQEV 193
+D K P +T+ + + ++EV
Sbjct: 195 ----------DDSPKPPPRRITLTLPAIQRSREV 218
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima}
SCOP: c.124.1.1 PDB: 1pbt_A
Length = 232
Score = 90.4 bits (225), Expect = 2e-22
Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 20/155 (12%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDF--KPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQ 58
+ +I ++ + K+ + + L G TPL +Y+KL E
Sbjct: 14 EKTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDK---IFVVLAGGRTPLPVYEKLAEQK-- 68
Query: 59 GKISFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAE 111
+ + F DE NF + FS I NVH +D + +
Sbjct: 69 --FPWNRIHFFLSDERYVPLDSDQSNF--RNINEVLFSRAKIPSGNVHYVDTSL-PIEKA 123
Query: 112 CVQYEKDIKEA-GGIHLFVGGIGPDGHIAFNEPGS 145
C +YE++I+ A L + G+GPDGH+A
Sbjct: 124 CEKYEREIRSATDQFDLAILGMGPDGHVASIFDLE 158
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.33A {Neisseria
gonorrhoeae}
Length = 232
Score = 87.0 bits (216), Expect = 3e-21
Identities = 32/203 (15%), Positives = 59/203 (29%), Gaps = 26/203 (12%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDF--KPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQ 58
++ + A+ A V + + G VL + G +P+ + L Q
Sbjct: 3 FVWHEYENAAEAAQSLADAVADALQGALDEKGG---AVLAVSGGRSPIAFFNALS----Q 55
Query: 59 GKISFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVH-ILDGNAPDLHA 110
+ +K V DE N L R + + + DG
Sbjct: 56 KDLDWKNVGITLADERIVPTNHADSNT--GLVREYLLKNKAAAAVWIPMVEDGKTETELH 113
Query: 111 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 170
+ +K + + G+G DGH A P + A + A
Sbjct: 114 PDAVVDYALKHYKQPDVLILGMGNDGHTASIFPKAPQFQ------TAIDGSAGVALVHTT 167
Query: 171 DIKKVPKEALTVGVGTVMDAQEV 193
P E +++ + + V
Sbjct: 168 P-VTAPHERISMTLDAIAHTGHV 189
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A
{Shewanella baltica}
Length = 233
Score = 86.7 bits (215), Expect = 4e-21
Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 25/200 (12%)
Query: 2 RLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKI 61
D S + + A + ++ + L + G TPL +++ L I
Sbjct: 7 VFKSFDTPSALEQQLASKIASQLQEAVDA-RGKASLVVSGGSTPLKLFQLLSM----KSI 61
Query: 62 SFKYVKTFNMDEYG-------RNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQ 114
+ V DE N +L R + + L A
Sbjct: 62 DWSDVYITLADERWVEADADASNE--RLVREHLLQNR-ASNAKFRGLKNMFSTAEAGADM 118
Query: 115 YEKDIKE-AGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIK 173
+ + + V G+G DGH P S+ + L A +
Sbjct: 119 AAESLSNFPRPFDVVVLGMGNDGHTCSWFPCSA---------ELENALTTQALCVATNPT 169
Query: 174 KVPKEALTVGVGTVMDAQEV 193
P +T+ +++++++
Sbjct: 170 TAPHGRITLSKSAILNSRQI 189
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural
genomics of pathogen protozoa consortium, SGPP, leish
hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Length = 267
Score = 78.5 bits (193), Expect = 8e-18
Identities = 37/224 (16%), Positives = 67/224 (29%), Gaps = 47/224 (20%)
Query: 2 RLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKI 61
+ I +++S ++ + +L I + VL L G TP +Y++L E +
Sbjct: 7 TVKICENLSQMSFAAREVILAAIDA-RVDKSVPVVLALSGGSTPKRLYEELHEKDL-ALL 64
Query: 62 SFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAP-------- 106
V+ DE NF + + +V +D A
Sbjct: 65 QQHAVQFILGDERLLSEDDEQSNF--SMATKALLRDVP--SSDVISIDRRAALATSKDEK 120
Query: 107 ----DLHAECVQYEKDIKEA-------------GGIHLFVGGIGPDGHIAFNEPGSSLAS 149
A YE + + + + G G DGH A P S A+
Sbjct: 121 GGLDGAWAVAQDYEVKLLNCLPCKQINGTAKSVPVVDIVLLGFGSDGHTASIFPDSVAAT 180
Query: 150 RTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEV 193
+ + F + +T+ + A+ V
Sbjct: 181 ---------DEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAKHV 215
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative hydrolase;
1.75A {Chromohalobacter salexigens}
Length = 226
Score = 74.7 bits (184), Expect = 1e-16
Identities = 35/203 (17%), Positives = 56/203 (27%), Gaps = 29/203 (14%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDF--KPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQ 58
M + +AE A V + + K +L + G TP + L
Sbjct: 2 MMNTTQEGRQRLAERLADTVAQALEADLAKRER---ALLVVSGGSTPKPFFTSL----AA 54
Query: 59 GKISFKYVKTFNMDEY-------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAE 111
+ + V DE N +L R H L + A
Sbjct: 55 KALPWARVDVTLADERWVTADDADSNA--RLVRETLLVGP-AAEACFHPLTTDDDTPEAG 111
Query: 112 CVQYEKDIKEA-GGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 170
+ ++ + G+G DGH A P S LE +
Sbjct: 112 VETVAERLESLPWPASAVILGMGGDGHTASLFPDSE---------QLATALETTSAAVVV 162
Query: 171 DIKKVPKEALTVGVGTVMDAQEV 193
VP+ +T+ + DA
Sbjct: 163 HAPSVPQARITLSASRLADAGLH 185
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 1e-08
Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 69/188 (36%)
Query: 3 LIILDDVSNVAEWSA-----------RYVLKKITDFKPG----------------PD--- 32
L++L +V N W+A R+ K++TDF PD
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 33 NYF--VLG-----LP---TGGTPLGMYKKLI-EYHQQGKISFKYVKTFNMDEYGR---NF 78
+ L LP P + +I E + G ++ K N D+ +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 79 LTKL----FRHNFFSHIDIQPENVHI------------LDGNAPDLHAECVQY---EKDI 119
L L +R F + + P + HI + + + + +Y EK
Sbjct: 363 LNVLEPAEYRKMFDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 120 KEAG-GIH 126
KE+ I
Sbjct: 422 KESTISIP 429
Score = 32.5 bits (73), Expect = 0.10
Identities = 25/172 (14%), Positives = 47/172 (27%), Gaps = 47/172 (27%)
Query: 31 PDNYFVLGLPTGGTP---LGMYKKLI-----EYHQQGKISFKYVKTFNMDEYGRNFLTKL 82
F L L +P L M +KL+ + + S + L +L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI---HSIQAELRRL 237
Query: 83 FRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIK------------EAGGIHLFVG 130
+ + + +L + VQ K + F+
Sbjct: 238 LKSKPY------ENCLLVLL----N-----VQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 131 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTV 182
HI+ + +L E ++ D + +P+E LT
Sbjct: 283 AATT-THISLDHHSMTLTPD--------EVKSLLLKYLDCRPQDLPREVLTT 325
Score = 32.5 bits (73), Expect = 0.12
Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 48/153 (31%)
Query: 18 RYVLKKITD----FKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDE 73
Y + K D P D YF Y I +H + + + F M
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYF-------------Y-SHIGHHLKNIEHPERMTLFRMVF 497
Query: 74 YGRNFLTKLFRHNFFSH----------IDIQPENVHILDGNAPDLHAECVQYEKDIKEAG 123
FL + RH+ + ++ +I D N P + I +
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-NDPKYE----RLVNAILD-- 550
Query: 124 GIHLFVGGIGPDG---------HIAFNEPGSSL 147
F+ I + IA ++
Sbjct: 551 ----FLPKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 27.1 bits (59), Expect = 6.5
Identities = 25/154 (16%), Positives = 42/154 (27%), Gaps = 39/154 (25%)
Query: 69 FNMDE--YGRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIH 126
F E Y + +F F + D + + D L E E D
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCK----DVQDMPKSILSKE----EID-------- 52
Query: 127 LFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIK--------KVPKE 178
HI + + TL + E +F + ++ + E
Sbjct: 53 ----------HI-IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 179 ALTVGVGTVMDAQEVRICYGFVDSYKLRKPAVPR 212
+ T M ++ Y D+ K V R
Sbjct: 102 QRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVSR 133
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 30.2 bits (68), Expect = 0.36
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 172 IKKVPKEALTVGVGTVMDAQEVRIC 196
+K + K L +G GTV +E
Sbjct: 55 LKALRKSGLLLGAGTVRSPKEAEAA 79
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase,
structural genomics CONS SGC, hemicholinium-3,
phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens}
PDB: 3lq3_A* 2ig7_A*
Length = 379
Score = 30.2 bits (67), Expect = 0.52
Identities = 13/71 (18%), Positives = 19/71 (26%)
Query: 46 LGMYKKLIEYHQQGKISFKYVKTFNMDEYGRNFLTKLFRHNFFSHIDIQPENVHILDGNA 105
L + L + + R L F H DIQ N+ +L
Sbjct: 180 LKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPE 239
Query: 106 PDLHAECVQYE 116
V +E
Sbjct: 240 NADSLMLVDFE 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.61
Identities = 36/187 (19%), Positives = 61/187 (32%), Gaps = 62/187 (33%)
Query: 30 GPDNYFVLGLPTGGTPLGMYKKLIEYHQ--------QGKISF-----KYVKTFN------ 70
G N V G P +Y + + Q +I F K+ F
Sbjct: 373 GAKNLVV-----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 71 ----MDEYGRNFLTKLFRHNF-FSHIDIQ-P-------ENVHILDGNAPDLHAEC----- 112
+ L ++N F+ DIQ P ++ +L G+ + +C
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 113 VQYEKDIKEAGGIHL--FVGGIGPDGHIAFNEPG-SSLASRTR----LKTLAQETLEANA 165
V++E + H+ F GP G G L R + ++ + TL+ N
Sbjct: 488 VKWET-TTQFKATHILDF----GPGG-----ASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Query: 166 RFFDNDI 172
D+D
Sbjct: 538 ---DDDY 541
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics,
joint center for structu genomics, JCSG, protein
structure initiative; NMR {Thermotoga maritima} SCOP:
c.55.5.1
Length = 116
Score = 28.6 bits (64), Expect = 0.63
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 87 FFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPG 144
+F D + NV +++ D H + + + G +L +G + G
Sbjct: 26 YFIIYDTESGNVEVVENTIADAHGTGPKVVQSLVSKGVEYLIASNVGRNAFETLKAAG 83
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 29.0 bits (65), Expect = 1.0
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 172 IKKVPKEALTVGVGTVMDAQEVRIC 196
I + +G GTV+ ++V
Sbjct: 52 IVDAYGDKALIGAGTVLKPEQVDAL 76
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 28.9 bits (65), Expect = 1.5
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 22/73 (30%)
Query: 38 GLP--TGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYGRNFLTKLF------------ 83
G + +G Y K++ K S + ++ + +N +
Sbjct: 269 GDTPFYADSLVGTYSKIM----NHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGV 324
Query: 84 ----RHNFFSHID 92
RH FF +
Sbjct: 325 EEIKRHLFFKNDQ 337
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 28.2 bits (63), Expect = 1.7
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 172 IKKVPKEA--LTVGVGTVMDAQEVRIC 196
I+ + + GTV+ A++V +
Sbjct: 59 IRLLRANRPDFLIAAGTVLTAEQVVLA 85
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 27.5 bits (61), Expect = 3.0
Identities = 4/27 (14%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 172 IKKVPKEA--LTVGVGTVMDAQEVRIC 196
I+ + + + +G GT+++ ++
Sbjct: 76 IRLLRQAQPEMLIGAGTILNGEQALAA 102
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 27.5 bits (62), Expect = 3.5
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 122 AGGIHLFVGGIGPDGHIAFNEPG 144
G+HLF G + D H+ FNEPG
Sbjct: 52 GTGLHLFPGMV--DVHVHFNEPG 72
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate,
beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Length = 225
Score = 27.1 bits (60), Expect = 3.8
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 172 IKKVPKEA--LTVGVGTVMDAQEVRIC 196
I+ + ++ L VG GTV+D
Sbjct: 68 IQVLREQRPELCVGAGTVLDRSMFAAV 94
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 26.9 bits (60), Expect = 5.9
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 31 PDNYFVLGLPTG--GTPLGMYKKLIEYHQQGKIS 62
PD + + P G G +K EYHQ G I
Sbjct: 188 PDVHAL---PVGNAGNITAYWKGYTEYHQLGLID 218
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 26.8 bits (60), Expect = 6.3
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 31 PDNYFVLGLPTG--GTPLGMYKKLIEYHQQGKIS 62
P + + P G G + YH GK
Sbjct: 179 PHYHAL---PVGNAGNITAHWMGYKAYHALGKAK 209
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 26.8 bits (58), Expect = 6.8
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 8/130 (6%)
Query: 47 GMYKKLIEYHQQGKISFKYVKTFNMDEYGRNFLTKLFRHNFFSHIDIQPENVHILDGNAP 106
G+ ++ ++ Q K + ++ + + + S + + + L
Sbjct: 152 GLLQRRRKWRSQLKAFYDRESENPLEMFETVPVWRRQPVRVLSLFEDIKKELTSLGFLES 211
Query: 107 DLHAECVQY--------EKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQ 158
+++ KD++E G L G P GH P L RL A+
Sbjct: 212 GSDPGQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDRPPSWYLFQFHRLLQYAR 271
Query: 159 ETLEANARFF 168
+ FF
Sbjct: 272 PKPGSPGPFF 281
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain,
hydrolase, metal-binding, purine metabolism, zinc; HET:
KCX; 2.10A {Escherichia coli}
Length = 473
Score = 26.8 bits (60), Expect = 6.9
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 122 AGGIHLFVGGIGPDGHIAFNEPG 144
A G+ + G + D H +EPG
Sbjct: 66 ASGLVVSPGMV--DAHTHISEPG 86
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 26.3 bits (58), Expect = 7.7
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 172 IKKVPKEALTVGVGTVMDAQEVRIC 196
+ + ++ +G GTV ++ R
Sbjct: 55 LSFLKEKGAIIGAGTVTSVEQCRKA 79
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 26.5 bits (59), Expect = 7.9
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 31 PDNYFVLGLPTG--GTPLGMYKKLIEYHQQGKIS 62
PD +F+ P G G +K Y+++GKI+
Sbjct: 181 PDYHFI---PVGNAGNITAYWKGFKIYYEEGKIT 211
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.422
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,539,090
Number of extensions: 216189
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 47
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)