RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10371
(219 letters)
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Human (Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 186 bits (473), Expect = 2e-59
Identities = 132/201 (65%), Positives = 152/201 (75%), Gaps = 6/201 (2%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
M+LIIL+ S +EW+A+Y+ +I F PGP+ YF LGLPTG TPLG YKKLIEY++ G
Sbjct: 1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD 60
Query: 61 ISFKYVKTFNMDEY------GRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQ 114
+SFKYVKTFNMDEY +NFF HIDI PEN HILDGNA DL AEC
Sbjct: 61 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA 120
Query: 115 YEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKK 174
+E+ IK AGGI LFVGGIGPDGHIAFNEPGSSL SRTR+KTLA +T+ ANARFFD ++ K
Sbjct: 121 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK 180
Query: 175 VPKEALTVGVGTVMDAQEVRI 195
VP ALTVGVGTVMDA+EV I
Sbjct: 181 VPTMALTVGVGTVMDAREVMI 201
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Escherichia coli [TaxId: 562]}
Length = 266
Score = 176 bits (447), Expect = 1e-55
Identities = 116/203 (57%), Positives = 148/203 (72%), Gaps = 8/203 (3%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
MRLI L V +W+AR+++ +I FKP D FVLGLPTGGTP+ YK L+E H+ G+
Sbjct: 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQ 60
Query: 61 ISFKYVKTFNMDEYG-------RNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECV 113
+SFK+V TFNMDEY ++ NFF H+DI EN+++L+GNAPD+ AEC
Sbjct: 61 VSFKHVVTFNMDEYVGLPKEHPESYY-SFMHRNFFDHVDIPAENINLLNGNAPDIDAECR 119
Query: 114 QYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIK 173
QYE+ I+ G IHLF+GG+G DGHIAFNEP SSLASRTR+KTL +T AN+RFFDND+
Sbjct: 120 QYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVN 179
Query: 174 KVPKEALTVGVGTVMDAQEVRIC 196
+VPK ALTVGVGT++DA+EV I
Sbjct: 180 QVPKYALTVGVGTLLDAEEVMIL 202
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
flexneri [TaxId: 623]}
Length = 255
Score = 93.9 bits (233), Expect = 5e-24
Identities = 17/167 (10%), Positives = 49/167 (29%), Gaps = 9/167 (5%)
Query: 36 VLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDEYGRNF----LTKLFRHNFFSHI 91
++G G + + L + Q ++ + + + LT
Sbjct: 52 IVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAKLKGES 111
Query: 92 DIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRT 151
+ + + + + ++ + + + GIG +
Sbjct: 112 HLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDIALVGIGSPAIRDGANWHAFYGGEE 171
Query: 152 RLKTLAQETL-EANARFFDNDIKKV----PKEALTVGVGTVMDAQEV 193
A++ + +RFFD V ++ L++ + + A+
Sbjct: 172 SDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYS 218
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965
{Enterococcus faecalis [TaxId: 1351]}
Length = 247
Score = 75.1 bits (184), Expect = 4e-17
Identities = 23/199 (11%), Positives = 63/199 (31%), Gaps = 11/199 (5%)
Query: 2 RLIILDDVSNVAEWSARYVLKKITDF--KPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQG 59
R I++ S++ + +T+ P+ + + G T + + + +
Sbjct: 15 RCIVVAGDSDIQKKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLETEK 74
Query: 60 KISFKYVKTFNMDEYGRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQ---YE 116
+ + + E + + +++ + + + + +Q +
Sbjct: 75 RHNLFVPARGGIGEAVSVQANSISAV-MANKTGGNYRALYVPEQLSRETYNSLLQEPSIQ 133
Query: 117 KDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVP 176
+ + + V IG H+A S + E+ FFD + KV
Sbjct: 134 EVLTLISHANCVVHSIGRALHMAARRKMSD--DEMVMLKQKNAVAESFGYFFDEE-GKVV 190
Query: 177 KEALTVGVG--TVMDAQEV 193
+ +G+ + + V
Sbjct: 191 YKIPRIGLQLKNLQEIPYV 209
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga
maritima [TaxId: 2336]}
Length = 218
Score = 74.6 bits (182), Expect = 4e-17
Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 23/197 (11%)
Query: 2 RLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGKI 61
+ +I ++ + K+ D + L G TPL +Y+KL E K
Sbjct: 1 KTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDK-IFVVLAGGRTPLPVYEKLAE----QKF 55
Query: 62 SFKYVKTFNMDEYGRNFLT-----KLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYE 116
+ + F DE + + FS I NVH +D + P A
Sbjct: 56 PWNRIHFFLSDERYVPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYER 115
Query: 117 KDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVP 176
+ L + G+GPDGH+A + N F +
Sbjct: 116 EIRSATDQFDLAILGMGPDGHVASIFDLETGNKD-------------NLVTFTDPSGDPK 162
Query: 177 KEALTVGVGTVMDAQEV 193
+T+ + + V
Sbjct: 163 VPRVTLTFRALNTSLYV 179
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR
{Bacillus subtilis [TaxId: 1423]}
Length = 250
Score = 73.9 bits (181), Expect = 1e-16
Identities = 21/202 (10%), Positives = 59/202 (29%), Gaps = 19/202 (9%)
Query: 2 RLIILDDVSNVAEWSARYVLKKITDF-----KPGPDNYFVLGLPTGGTPLGMYKKLIEYH 56
II+ S+ + W + + + ++ + G T + + +
Sbjct: 21 DAIIVSGDSDQSPWVKKEMGRAAVACMKKRFSGKN----IVAVTGGTTIEAVAEMMTPDS 76
Query: 57 QQGKISFKYVKTFNMDEYGRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQ-- 114
+ ++ F V + + + + ++ ++
Sbjct: 77 KNRELLF--VPARGGLGEDVKNQANTICAHMAEKASGTYRLLFVPGQLSQGAYSSIIEEP 134
Query: 115 -YEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIK 173
++ + + V GIG +A + A EA +F+ D
Sbjct: 135 SVKEVLNTIKSASMLVHGIGEAKTMAQRRNTPLEDLKKIDDNDA--VTEAFGYYFNAD-G 191
Query: 174 KVPKEALTVGVG--TVMDAQEV 193
+V + +VG+ + ++
Sbjct: 192 EVVHKVHSVGMQLDDIDAIPDI 213
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395
{Pseudomonas syringae [TaxId: 317]}
Length = 258
Score = 64.2 bits (156), Expect = 3e-13
Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 10/168 (5%)
Query: 36 VLGLPTGGTPLGMYKKLIEYHQQGKISFKYVKTFNMDE----YGRNFLTKLFRHNFFSHI 91
+G+ + + + + + + + V+ + LT+
Sbjct: 55 HIGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATLLNCPA 114
Query: 92 DIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRT 151
+ P + E + ++ + I L + GIG + +
Sbjct: 115 FLLPSQSIEQSVESKQRIVEMEEVKEVLHRFDSITLAIVGIGELEPSQLLRNSGNYYTED 174
Query: 152 RLKTLAQETL--EANARFFDNDIKKVPKE----ALTVGVGTVMDAQEV 193
L+ LA+ + R+FD K V +E +++G+G + V
Sbjct: 175 MLRVLAERGAVGDICLRYFDAQGKPVLEEDEEFVVSMGLGKLRSINRV 222
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 262
Score = 64.2 bits (156), Expect = 4e-13
Identities = 24/189 (12%), Positives = 56/189 (29%), Gaps = 14/189 (7%)
Query: 12 VAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKL--IEYHQQGKISFKYVKTF 69
+++ +A + I D +G G + + + +
Sbjct: 40 ISQVAAGVLRNLIDDNM-------KIGFSWGKSLSNLVDLIHSKSVRNVHFYPLAGGPSH 92
Query: 70 NMDEYGRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFV 129
+Y N L F + + D + +E + + V
Sbjct: 93 IHAKYHVNTLIYEMSRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNSWKDLDIAV 152
Query: 130 GGIGPDGHIAFNEPGSSLASRTRLKTLAQETL-EANARFFDNDIKKV----PKEALTVGV 184
GIG + ++ L + +T+ E RFFD+ K+V + + + +
Sbjct: 153 VGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISL 212
Query: 185 GTVMDAQEV 193
+ + +
Sbjct: 213 EDLKNIPQS 221
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 29.5 bits (65), Expect = 0.24
Identities = 17/135 (12%), Positives = 33/135 (24%), Gaps = 4/135 (2%)
Query: 3 LIILDDVS----NVAEWSARYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQ 58
L + D S N +V + F + + T + +
Sbjct: 8 LYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISK 67
Query: 59 GKISFKYVKTFNMDEYGRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKD 118
G K V + + + + DG L + E
Sbjct: 68 GLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAK 127
Query: 119 IKEAGGIHLFVGGIG 133
I + G ++ G+
Sbjct: 128 ISRSLGASVYCVGVL 142
>d1rdua_ c.55.5.1 (A:) Hypothetical protein TM1290 {Thermotoga
maritima [TaxId: 2336]}
Length = 116
Score = 28.0 bits (62), Expect = 0.48
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 87 FFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPG 144
+F D + NV +++ D H + + + G +L +G + G
Sbjct: 26 YFIIYDTESGNVEVVENTIADAHGTGPKVVQSLVSKGVEYLIASNVGRNAFETLKAAG 83
>d1spgb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Fish (Leiostomus
xanthurus) [TaxId: 59837]}
Length = 147
Score = 28.1 bits (62), Expect = 0.53
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 5/51 (9%)
Query: 70 NMDEYGRNFLTKLFR-----HNFFSHIDIQPENVHILDGNAPDLHAECVQY 115
++ E G L++L F N IL H + V
Sbjct: 19 DVGEIGPQALSRLLIVYPWTQRHFKGFGNISTNAAILGNAKVAEHGKTVMG 69
>d2dn3a1 a.1.1.2 (A:2-141) Hemoglobin, alpha-chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 25.8 bits (56), Expect = 2.5
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 70 NMDEYGRNFLTKLFRHN-----FFSHIDIQPENVHI 100
+ EYG L ++F +F H D+ + +
Sbjct: 19 HAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQV 54
>d1a6ma_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon)
[TaxId: 9755]}
Length = 151
Score = 25.8 bits (56), Expect = 3.6
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 5/46 (10%)
Query: 70 NMDEYGRNFLTKLF-----RHNFFSHIDIQPENVHILDGNAPDLHA 110
++ +G++ L +LF F + H
Sbjct: 20 DVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHG 65
>d3d1kb1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish
(Trematomus newnesi) [TaxId: 35730]}
Length = 146
Score = 25.5 bits (55), Expect = 3.6
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 5/51 (9%)
Query: 70 NMDEYGRNFLTKLFRHN-----FFSHIDIQPENVHILDGNAPDLHAECVQY 115
+ D+ G L++ +FS I+ H V +
Sbjct: 19 DYDDIGPKALSRCLVVYPWTQRYFSGFGNLYNAEGIMSNANVAAHGIKVLH 69
>d1wmub_ a.1.1.2 (B:) Hemoglobin, beta-chain {Aldabra giant tortoise
(Geochelone gigantea) [TaxId: 167804]}
Length = 146
Score = 25.0 bits (54), Expect = 4.9
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 70 NMDEYGRNFLTKLF------RHNFFSHIDIQPENVHILDGNAPDLHAECVQ 114
N+ E G L +L + F S ++ N IL H + V
Sbjct: 19 NVGEVGGEALARLLIVYPWTQRFFASFGNLSSAN-AILHNAKVLAHGQKVL 68
>g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human
rhinovirus B 14 (HRV-14) [TaxId: 12131]}
Length = 295
Score = 25.5 bits (56), Expect = 4.9
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 33 NYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
+ LP +G++ + + +H G+
Sbjct: 109 KGWCWKLPDALKDMGVFGQNMFFHSLGR 136
>d1qcsa2 d.31.1.1 (A:86-201) C-terminal domain of NSF-N, NSF-Nc
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 116
Score = 24.8 bits (54), Expect = 5.3
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 61 ISFKYVKTFNMDEYGRNFLTKLFRHNFFSHI 91
I F K + + Y + + F F +
Sbjct: 14 IDFLQKKNIDSNPYDTDKMAAEFIQQFNNQA 44
>d1jeba_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Human (Homo sapiens),
zeta isoform [TaxId: 9606]}
Length = 141
Score = 25.0 bits (54), Expect = 6.1
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 70 NMDEYGRNFLTKLFR-----HNFFSHIDIQPENVHI 100
D G L +LF +F H D+ P + +
Sbjct: 20 QADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQL 55
>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 320
Score = 25.2 bits (55), Expect = 6.9
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 18 RYVLKKITDFKPGPDNYFVLGLPTGGTPLGMYKKLIEYHQQGK 60
R+ ++ G + P + +G++ + ++YH G+
Sbjct: 121 RFYTLDSIKWEKG-SVGWWWKFPEALSDMGLFGQNMQYHYLGR 162
>d1scta_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca
inaequivalvis) [TaxId: 6561]}
Length = 149
Score = 24.7 bits (53), Expect = 8.4
Identities = 5/44 (11%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 62 SFKYVKTFNMDEYGRNFLTKLFR-----HNFFSHIDIQPENVHI 100
S+ + +++ G ++ LF +F+ + +
Sbjct: 21 SWGVLSA-DIEATGLMLMSNLFTLRPDTKTYFTRLGDVQKGKAN 63
>d1spga_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Fish (Leiostomus
xanthurus) [TaxId: 59837]}
Length = 143
Score = 24.7 bits (53), Expect = 8.4
Identities = 7/57 (12%), Positives = 13/57 (22%), Gaps = 1/57 (1%)
Query: 70 NMDEYGRNFLTKLFRHNFFSHIDIQPENVHILDGNAPDLHAECVQYEKDIKEAGGIH 126
E G L ++ + E L P + + +A
Sbjct: 20 KSAELGAEALGRMLVSFPQTK-IYFSEWGQDLGPQTPQVRNHGAVIMAAVGKAVKSI 75
>d3d1ka1 a.1.1.2 (A:1-142) Hemoglobin, alpha-chain {Antarctic fish
(Trematomus newnesi) [TaxId: 35730]}
Length = 142
Score = 24.3 bits (52), Expect = 8.5
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 70 NMDEYGRNFLTKLFR-----HNFFSHIDIQPEN---VHILDGNAPDLHAECVQYEKDIKE 121
+ D G + L+++ +FSH + A V D+K
Sbjct: 20 SSDAIGNDALSRMIVVYPQTKIYFSHWPDVTPGSPNIKAHGKKVMGGIALAVSKIDDLKT 79
Query: 122 A 122
Sbjct: 80 G 80
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 24.8 bits (54), Expect = 8.7
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 54 EYHQQGKISFKYVKTFNMDEYGRN--FLTKLF 83
E +++ IS V Y +N L KLF
Sbjct: 63 EIYRKNNISVFEVDGNVSTIYCQNLCLLAKLF 94
>d1xq5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Yellow perch (Perca
flavescens) [TaxId: 8167]}
Length = 142
Score = 24.3 bits (52), Expect = 9.7
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 12/77 (15%)
Query: 70 NMDEYGRNFLTKLFRH-----NFFSHIDIQPENVHILDGNAPDLHAECVQYEKDI----- 119
+E G + L+++ +FSH ++ + + V I
Sbjct: 20 KAEEIGSDALSRMLAVYPQTKTYFSHWKDLSPGSAPVNKHGKTIMGGIVDAVASIDDLNA 79
Query: 120 --KEAGGIHLFVGGIGP 134
+H F + P
Sbjct: 80 GLLALSELHAFTLRVDP 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.141 0.422
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 872,774
Number of extensions: 42016
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 33
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)