BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10372
(63 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HN6|A Chain A, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|B Chain B, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|C Chain C, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|D Chain D, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|E Chain E, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|F Chain F, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
Length = 289
Score = 104 bits (260), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/63 (74%), Positives = 56/63 (88%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IGPDGHIAFNEPGSSL SRTR+KTL Q+T+ AN+RFF+ D+ KVPK ALTVG+GT+MD+Q
Sbjct: 159 IGPDGHIAFNEPGSSLTSRTRIKTLTQDTIIANSRFFEGDVNKVPKNALTVGIGTIMDSQ 218
Query: 61 ERL 63
E L
Sbjct: 219 EVL 221
>pdb|1NE7|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|B Chain B, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|C Chain C, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|D Chain D, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|E Chain E, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|F Chain F, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
Length = 289
Score = 103 bits (256), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/61 (78%), Positives = 54/61 (88%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IGPDGHIAFNEPGSSL SRTR+KTLA +T+ ANARFFD ++ KVP ALTVGVGTVMDA+
Sbjct: 138 IGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAR 197
Query: 61 E 61
E
Sbjct: 198 E 198
>pdb|1HOR|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOR|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOT|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOT|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1CD5|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T Conformer
pdb|1FQO|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FQO|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FRZ|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FRZ|B Chain B, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS5|B Chain B, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS6|A Chain A, Glucosamine-6-phosphate Deaminase From E.coli, T
Conformer, At 2.2a Resolution
pdb|1FSF|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 1.9a Resolution
pdb|2WU1|A Chain A, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites.
pdb|2WU1|B Chain B, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites
Length = 266
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
+G DGHIAFNEP SSLASRTR+KTL +T AN+RFFDND+ +VPK ALTVGVGT++DA+
Sbjct: 138 VGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAE 197
Query: 61 ERL 63
E +
Sbjct: 198 EVM 200
>pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of The
Glucosamine-6-Phosphate Deaminase From E.Coli
Length = 266
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 53/63 (84%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
+G DGHIAFNEP SSLASRTR+KTL +T AN+RF DND+ +VPK ALTVGVGT++DA+
Sbjct: 138 VGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFADNDVNQVPKYALTVGVGTLLDAE 197
Query: 61 ERL 63
E +
Sbjct: 198 EVM 200
>pdb|2BKV|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKV|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
Length = 242
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IG +GHI FNEPG+S SRT + TL ++T +ANAR+F + I VPK+ALT+G+ T++ ++
Sbjct: 133 IGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARYFPS-IDSVPKKALTMGIQTILSSK 191
Query: 61 ERL 63
L
Sbjct: 192 RIL 194
>pdb|2RI0|A Chain A, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) From S. Mutans
pdb|2RI0|B Chain B, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) From S. Mutans
Length = 234
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IG + HI FNEPG++ +S+T L L T+ AN+RFF+ + VPK+A+++G+ ++M A+
Sbjct: 126 IGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFEK-AEDVPKQAISMGLASIMSAK 184
>pdb|2RI1|A Chain A, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) With Glcn6p From S. Mutans
pdb|2RI1|B Chain B, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) With Glcn6p From S. Mutans
Length = 235
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IG + HI FNEPG++ +S+T L L T+ AN+RFF+ + VPK+A+++G+ ++M A+
Sbjct: 127 IGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFEK-AEDVPKQAISMGLASIMSAK 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,690,453
Number of Sequences: 62578
Number of extensions: 41856
Number of successful extensions: 54
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 7
length of query: 63
length of database: 14,973,337
effective HSP length: 34
effective length of query: 29
effective length of database: 12,845,685
effective search space: 372524865
effective search space used: 372524865
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)