RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10372
(63 letters)
>gnl|CDD|140308 PTZ00285, PTZ00285, glucosamine-6-phosphate isomerase; Provisional.
Length = 253
Score = 120 bits (302), Expect = 6e-36
Identities = 46/63 (73%), Positives = 54/63 (85%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IG DGHIAFNEPGSSL SRTR+K+L QET++ANARFF NDI KVP ALTVG+ T+M+A+
Sbjct: 138 IGTDGHIAFNEPGSSLDSRTRVKSLNQETIDANARFFGNDISKVPTMALTVGIRTIMEAR 197
Query: 61 ERL 63
E L
Sbjct: 198 EVL 200
>gnl|CDD|179028 PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional.
Length = 261
Score = 115 bits (291), Expect = 5e-34
Identities = 44/61 (72%), Positives = 54/61 (88%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IG +GHIAFNEPGSS ASRTR+KTL ++T AN+RFFD DI++VPK ALTVGVGT++DA+
Sbjct: 138 IGENGHIAFNEPGSSFASRTRIKTLTEDTRIANSRFFDGDIEQVPKYALTVGVGTILDAK 197
Query: 61 E 61
E
Sbjct: 198 E 198
>gnl|CDD|129593 TIGR00502, nagB, glucosamine-6-phosphate isomerase. The set of
proteins recognized by This model includes a closely
related pair from Bacillus subtilis, one of which is
uncharacterized but included as a member of the
orthologous set [Central intermediary metabolism, Amino
sugars].
Length = 259
Score = 112 bits (282), Expect = 7e-33
Identities = 42/61 (68%), Positives = 56/61 (91%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IGPDGHIAFNEPGSSL SRTR+KTL ++T++AN+RFF+ D+ +VPK ALTVG+GT++D++
Sbjct: 138 IGPDGHIAFNEPGSSLTSRTRIKTLTEDTIQANSRFFEGDVNQVPKYALTVGIGTILDSK 197
Query: 61 E 61
E
Sbjct: 198 E 198
>gnl|CDD|238693 cd01399, GlcN6P_deaminase, GlcN6P_deaminase:
Glucosamine-6-phosphate (GlcN6P) deaminase subfamily;
GlcN6P deaminase catalyzes the reversible conversion of
GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium.
The reaction is an aldo-keto isomerization coupled with
an amination or deamination. It is the last step of the
metabolic pathway of N-acetyl-D-glucosamine-6-phosphate
(GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that
is allosterically activated by GlcNAc6P.
Length = 232
Score = 107 bits (269), Expect = 5e-31
Identities = 38/61 (62%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IG +GHI FNEPGSSL SRTR+ TL + T +ANARFFD D + VP +A+T+G+GT+M A+
Sbjct: 124 IGENGHIGFNEPGSSLDSRTRVVTLDESTRQANARFFDGD-EDVPTQAITMGIGTIMKAK 182
Query: 61 E 61
E
Sbjct: 183 E 183
>gnl|CDD|235005 PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein;
Validated.
Length = 652
Score = 70.8 bits (174), Expect = 2e-16
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IG GHI FNEPGS SRTRL TL T A F + VP++A+T+GVGT++ A+
Sbjct: 166 IGRTGHIGFNEPGSGRNSRTRLVTLDHITRRDAASDF-FGEENVPRKAITMGVGTILKAR 224
Query: 61 E 61
Sbjct: 225 R 225
>gnl|CDD|223440 COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate
isomerase/deaminase [Carbohydrate transport and
metabolism].
Length = 238
Score = 65.7 bits (161), Expect = 4e-15
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 1 IGPDGHIAFNEPGSS-LASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 59
+G DGHIA PG+ L S T T EAN+R F D KVPKE +T+ + T++DA
Sbjct: 134 MGEDGHIASLFPGTPALDSAT--------TEEANSRVFVGDSPKVPKERITLTLPTILDA 185
Query: 60 QERL 63
+E L
Sbjct: 186 KEVL 189
>gnl|CDD|182064 PRK09762, PRK09762, galactosamine-6-phosphate isomerase;
Provisional.
Length = 232
Score = 34.4 bits (79), Expect = 0.001
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
+G +GH+ NEPG SL + L T + + +T+G+ +++A+
Sbjct: 132 LGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAG---RPVTRGITLGLKDILNAR 188
Query: 61 ERL 63
E L
Sbjct: 189 EVL 191
>gnl|CDD|183470 PRK12358, PRK12358, putative 6-phosphogluconolactonase;
Provisional.
Length = 239
Score = 31.6 bits (72), Expect = 0.010
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 1 IGPDGHIAFNEPG-SSLASRTRLKTLAQETLEANARFFDN-DIKKVPKEALTVGVGTVMD 58
+G DGH N PG + T + E ++ A D VP +T+G ++M
Sbjct: 126 LGADGHFCGNLPGTTHFHDETVEVPIQGEMVDIVAHGELGGDFSLVPDSYVTMGPKSIMA 185
Query: 59 AQE 61
A+
Sbjct: 186 AKN 188
>gnl|CDD|182951 PRK11085, PRK11085, magnesium/nickel/cobalt transporter CorA;
Provisional.
Length = 316
Score = 29.7 bits (67), Expect = 0.059
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 10 NEPGSSLASRTRLKTLAQETLEANARFFDND 40
+E G SLA+R L E +EA+ARFF+++
Sbjct: 44 SELGQSLATRPEL-----EDIEASARFFEDE 69
>gnl|CDD|176044 cd08399, C2_PI3K_class_I_gamma, C2 domain present in class I
gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks
(AKA phosphatidylinositol (PtdIns) 3-kinases) regulate
cell processes such as cell growth, differentiation,
proliferation, and motility. PI3Ks work on
phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the
inositol ring. There are 3 classes of PI3Ks based on
structure, regulation, and specificity. All classes
contain a C2 domain, a PIK domain, and a kinase
catalytic domain. The members here are class I, gamma
isoform PI3Ks and contain both a Ras-binding domain and
a p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2
domain containing a nuclear localization signal. C2
domains fold into an 8-standed beta-sandwich that can
adopt 2 structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind
phospholipids, inositol polyphosphates, and
intracellular proteins. Most C2 domain proteins are
either signal transduction enzymes that contain a
single C2 domain, such as protein kinase C, or membrane
trafficking proteins which contain at least two C2
domains, such as synaptotagmin 1. However, there are a
few exceptions to this including RIM isoforms and some
splice variants of piccolo/aczonin and intersectin
which only have a single C2 domain. C2 domains with a
calcium binding region have negatively charged
residues, primarily aspartates, that serve as ligands
for calcium ions. Members have a type-I topology.
Length = 178
Score = 27.2 bits (60), Expect = 0.40
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 16 LASRTRLKTLAQETLEANARFFDNDIKKVPKEAL 49
RT K +E L FD IK +PK AL
Sbjct: 46 CQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGAL 79
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 26.8 bits (60), Expect = 0.58
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 7 IAFNEPGSSLASR 19
IAF+EP SSL++R
Sbjct: 162 IAFDEPTSSLSAR 174
>gnl|CDD|216349 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate
isomerases/6-phosphogluconolactonase.
Length = 191
Score = 24.4 bits (54), Expect = 4.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 1 IGPDGHIAFNEPGS 14
+G DGH A PGS
Sbjct: 122 MGEDGHTASLFPGS 135
>gnl|CDD|237801 PRK14719, PRK14719, bifunctional
RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase;
Provisional.
Length = 360
Score = 23.7 bits (51), Expect = 9.1
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
Query: 29 TLEANARFF-DNDIKKVPK-----EALTVGVGTVMDAQERL 63
T+E ++R +ND+K+V + +A+ VG+GTV+ RL
Sbjct: 156 TIENDSRISGENDLKRVHEIRKDVDAIMVGIGTVLKDDPRL 196
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.362
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,121,686
Number of extensions: 215935
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 13
Length of query: 63
Length of database: 10,937,602
Length adjustment: 34
Effective length of query: 29
Effective length of database: 9,429,566
Effective search space: 273457414
Effective search space used: 273457414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)