RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10372
(63 letters)
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI,
infectious disease, LYME DI non-hodgkin lymphomas,
neuroborreliosis; 2.20A {Borrelia burgdorferi}
Length = 289
Score = 112 bits (283), Expect = 6e-33
Identities = 46/61 (75%), Positives = 55/61 (90%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IGPDGHIAFNEPGSSL SRTR+KTL Q+T+ AN+RFF+ D+ KVPK ALTVG+GT+MD+Q
Sbjct: 159 IGPDGHIAFNEPGSSLTSRTRIKTLTQDTIIANSRFFEGDVNKVPKNALTVGIGTIMDSQ 218
Query: 61 E 61
E
Sbjct: 219 E 219
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic
effects, aldose-ketose isomerase multiple conformers,
isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP:
c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A
1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Length = 266
Score = 110 bits (277), Expect = 3e-32
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
+G DGHIAFNEP SSLASRTR+KTL +T AN+RFFDND+ +VPK ALTVGVGT++DA+
Sbjct: 138 VGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAE 197
Query: 61 E 61
E
Sbjct: 198 E 198
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme,
conformational disorder, conformational differences,
hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP:
c.124.1.1
Length = 289
Score = 110 bits (276), Expect = 6e-32
Identities = 48/61 (78%), Positives = 54/61 (88%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IGPDGHIAFNEPGSSL SRTR+KTLA +T+ ANARFFD ++ KVP ALTVGVGTVMDA+
Sbjct: 138 IGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAR 197
Query: 61 E 61
E
Sbjct: 198 E 198
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition,
fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis}
PDB: 2bkv_A*
Length = 242
Score = 103 bits (260), Expect = 7e-30
Identities = 31/61 (50%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IG +GHI FNEPG+S SRT + TL ++T +ANAR+F + I VPK+ALT+G+ T++ ++
Sbjct: 133 IGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARYFPS-IDSVPKKALTMGIQTILSSK 191
Query: 61 E 61
Sbjct: 192 R 192
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET:
BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Length = 234
Score = 102 bits (256), Expect = 2e-29
Identities = 26/61 (42%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
IG + HI FNEPG++ +S+T L L T+ AN+RFF+ + VPK+A+++G+ ++M A+
Sbjct: 126 IGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFEK-AEDVPKQAISMGLASIMSAK 184
Query: 61 E 61
Sbjct: 185 M 185
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase,
malaria, carbohydrate metabolism, glucose metabolism,
NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium
vivax}
Length = 312
Score = 55.7 bits (134), Expect = 2e-11
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 20/81 (24%)
Query: 1 IGPDGHIAFNEPGSS--------------------LASRTRLKTLAQETLEANARFFDND 40
+G D HIA P +A+ L +F
Sbjct: 166 MGSDFHIASLFPNIFFNIYMNNYQNSYIYDESSIKVANSNDTSDNDNLDLLKEYVYFTTT 225
Query: 41 IKKVPKEALTVGVGTVMDAQE 61
++ +TV + + +A
Sbjct: 226 NNFDVRKRITVSLDLLGNASS 246
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, carboxylic
ester hydrolase; 2.10A {Mycobacterium smegmatis}
Length = 248
Score = 55.3 bits (134), Expect = 2e-11
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
+G +GH+ P + T + +D K P +T+ + V +++
Sbjct: 150 MGGEGHVNSLFPDTDAVRETERLVVG-----------VSDSPKPPPRRITLTLPAVQNSR 198
Query: 61 E 61
E
Sbjct: 199 E 199
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate
pathway, hydrolase, zinc binding site; HET: FLC; 2.00A
{Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Length = 266
Score = 53.2 bits (128), Expect = 1e-10
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
+G DGH A PGS T + F ++ K +T+ T+M A+
Sbjct: 160 LGSDGHTASIFPGSQAEKETD-------GKVVVSVGFPSETMKPKVWRVTLSPATIMQAR 212
Query: 61 E 61
Sbjct: 213 N 213
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A
{Mycobacterium abscessus}
Length = 251
Score = 51.9 bits (125), Expect = 4e-10
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
+G +GHI P + T+ +A D K P + +T+ + + ++
Sbjct: 152 MGGEGHINSLFPHTDAVKETQRLVVA-----------VPDSPKPPPQRITLTLPAIQRSR 200
Query: 61 E 61
E
Sbjct: 201 E 201
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid,
hydrolase, structural genomics; 2.15A {Mycobacterium
tuberculosis}
Length = 268
Score = 45.0 bits (107), Expect = 1e-07
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 1 IGPDGHIAFNEPGSS-LASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 59
+GP+GHI P S + TR+ +D K P +T+ + + +
Sbjct: 168 MGPEGHINSLFPHSPAVLESTRMVVAV------------DDSPKPPPRRITLTLPAIQRS 215
Query: 60 QE 61
+E
Sbjct: 216 RE 217
>1y89_A DEVB protein; structural genomics, protein structure initiative,
PSI, MIDW center for structural genomics, MCSG; HET:
2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Length = 238
Score = 44.6 bits (106), Expect = 2e-07
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 13/61 (21%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
+G DGH A PG + + L +A + + ++ + A+
Sbjct: 139 VGADGHTASLFPGQTDYADANLSVVA-------------SHPESGQLRVSKTAKVLQAAK 185
Query: 61 E 61
Sbjct: 186 R 186
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A
{Shewanella baltica}
Length = 233
Score = 35.5 bits (82), Expect = 3e-04
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
+G DGH P S+ + L A + P +T+ +++++
Sbjct: 137 MGNDGHTCSWFPCSA---------ELENALTTQALCVATNPTTAPHGRITLSKSAILNSR 187
Query: 61 ERL 63
+
Sbjct: 188 QIY 190
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.33A {Neisseria
gonorrhoeae}
Length = 232
Score = 34.6 bits (80), Expect = 6e-04
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 7/61 (11%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
+G DGH A P + A + A P E +++ + +
Sbjct: 135 MGNDGHTASIFPKAPQFQ------TAIDGSAGVALVHTTP-VTAPHERISMTLDAIAHTG 187
Query: 61 E 61
Sbjct: 188 H 188
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.003
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 6 HIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTV 51
HI+ + +L E ++ D + +P+E LT
Sbjct: 288 HISLDHHSMTLTPD--------EVKSLLLKYLDCRPQDLPREVLTT 325
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural
genomics of pathogen protozoa consortium, SGPP, leish
hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Length = 267
Score = 31.5 bits (71), Expect = 0.009
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
G DGH A P S A+ + + F + +T+ + A+
Sbjct: 163 FGSDGHTASIFPDSVAAT---------DEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAK 213
Query: 61 E 61
Sbjct: 214 H 214
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima}
SCOP: c.124.1.1 PDB: 1pbt_A
Length = 232
Score = 29.6 bits (67), Expect = 0.035
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 IGPDGHIAFNEPGS 14
+GPDGH+A
Sbjct: 145 MGPDGHVASIFDLE 158
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative hydrolase;
1.75A {Chromohalobacter salexigens}
Length = 226
Score = 29.2 bits (66), Expect = 0.050
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 1 IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
+G DGH A P S LE + VP+ +T+ + DA
Sbjct: 133 MGGDGHTASLFPDSE---------QLATALETTSAAVVVHAPSVPQARITLSASRLADAG 183
Query: 61 ERL 63
+
Sbjct: 184 LHV 186
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-
deoxyphosphogluconate aldolase; structural genomics,
NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Length = 207
Score = 26.0 bits (57), Expect = 0.75
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 41 IKKVPKEALTVGVGTVMDAQE 61
+K + K L +G GTV +E
Sbjct: 55 LKALRKSGLLLGAGTVRSPKE 75
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 24.8 bits (54), Expect = 2.2
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 41 IKKVPKEALTVGVGTVMDAQE 61
I + +G GTV+ ++
Sbjct: 52 IVDAYGDKALIGAGTVLKPEQ 72
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A
{Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Length = 277
Score = 23.9 bits (51), Expect = 4.1
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 19 RTRLKTLAQETLEA 32
R + +A ET+E
Sbjct: 1 RHSRRAIAAETVEI 14
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown
function; HET: MSE; 1.89A {Haemophilus influenzae}
SCOP: c.1.10.1
Length = 224
Score = 24.0 bits (52), Expect = 4.4
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 41 IKKVPKEA--LTVGVGTVMDAQE 61
I+ + + GTV+ A++
Sbjct: 59 IRLLRANRPDFLIAAGTVLTAEQ 81
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase;
lyase; 1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 23.3 bits (50), Expect = 6.2
Identities = 4/23 (17%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 41 IKKVPKEA--LTVGVGTVMDAQE 61
I+ + + + +G GT+++ ++
Sbjct: 76 IRLLRQAQPEMLIGAGTILNGEQ 98
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase,
sulfate, beta-BA lyase; 2.20A {Pseudomonas putida}
SCOP: c.1.10.1
Length = 225
Score = 22.9 bits (49), Expect = 9.5
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 41 IKKVPKEA--LTVGVGTVMDAQE 61
I+ + ++ L VG GTV+D
Sbjct: 68 IQVLREQRPELCVGAGTVLDRSM 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.362
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 924,177
Number of extensions: 40870
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 24
Length of query: 63
Length of database: 6,701,793
Length adjustment: 34
Effective length of query: 29
Effective length of database: 5,752,479
Effective search space: 166821891
Effective search space used: 166821891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.6 bits)