RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10372
         (63 letters)



>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
           NagB {Human (Homo sapiens) [TaxId: 9606]}
          Length = 281

 Score = 62.1 bits (150), Expect = 4e-14
 Identities = 48/61 (78%), Positives = 54/61 (88%)

Query: 1   IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
           IGPDGHIAFNEPGSSL SRTR+KTLA +T+ ANARFFD ++ KVP  ALTVGVGTVMDA+
Sbjct: 138 IGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAR 197

Query: 61  E 61
           E
Sbjct: 198 E 198


>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
           NagB {Escherichia coli [TaxId: 562]}
          Length = 266

 Score = 58.6 bits (141), Expect = 6e-13
 Identities = 44/63 (69%), Positives = 54/63 (85%)

Query: 1   IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQ 60
           +G DGHIAFNEP SSLASRTR+KTL  +T  AN+RFFDND+ +VPK ALTVGVGT++DA+
Sbjct: 138 VGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAE 197

Query: 61  ERL 63
           E +
Sbjct: 198 EVM 200


>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
           flexneri [TaxId: 623]}
          Length = 255

 Score = 40.8 bits (95), Expect = 2e-06
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 1   IGPDGHIAFNEPGSSLASRTRLKTLAQETL-EANARFFDNDIKKV----PKEALTVGVGT 55
           IG           +           A++   +  +RFFD     V     ++ L++ +  
Sbjct: 152 IGSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNK 211

Query: 56  VMDAQERL 63
           +  A+  +
Sbjct: 212 LKQARYSI 219


>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR
           {Bacillus subtilis [TaxId: 1423]}
          Length = 250

 Score = 36.9 bits (85), Expect = 4e-05
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 1   IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVG 54
           IG    +A          +      A    EA   +F+ D  +V  +  +VG+ 
Sbjct: 153 IGEAKTMAQRRNTPLEDLKKIDDNDA--VTEAFGYYFNAD-GEVVHKVHSVGMQ 203


>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 247

 Score = 36.2 bits (83), Expect = 6e-05
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 1   IGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVG 54
           IG   H+A     S       +        E+   FFD +  KV  +   +G+ 
Sbjct: 149 IGRALHMAARRKMSD--DEMVMLKQKNAVAESFGYFFDEE-GKVVYKIPRIGLQ 199


>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395
           {Pseudomonas syringae [TaxId: 317]}
          Length = 258

 Score = 34.2 bits (78), Expect = 3e-04
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 1   IGPDGHIAFNEPGSSLASRTRLKTLAQETL--EANARFFDNDIKKVPKE----ALTVGVG 54
           IG            +  +   L+ LA+     +   R+FD   K V +E     +++G+G
Sbjct: 155 IGELEPSQLLRNSGNYYTEDMLRVLAERGAVGDICLRYFDAQGKPVLEEDEEFVVSMGLG 214

Query: 55  TVMDAQERL 63
            +      L
Sbjct: 215 KLRSINRVL 223


>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 262

 Score = 33.0 bits (75), Expect = 8e-04
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 1   IGPDGHIAFNEPGSSLASRTRLKTLAQETL-EANARFFDNDIKKV----PKEALTVGVGT 55
           IG   +   ++    L      +    +T+ E   RFFD+  K+V     +  + + +  
Sbjct: 155 IGDFSNKGKHQWLDMLTEDDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISLED 214

Query: 56  VMDAQERL 63
           + +  + L
Sbjct: 215 LKNIPQSL 222


>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase
           homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}
          Length = 164

 Score = 23.6 bits (50), Expect = 1.7
 Identities = 2/19 (10%), Positives = 11/19 (57%)

Query: 36  FFDNDIKKVPKEALTVGVG 54
           ++D  + ++ ++   +G+ 
Sbjct: 122 YYDRYLMQLTRQQPKIGIA 140


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 214,289
Number of extensions: 6941
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 8
Length of query: 63
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 31
Effective length of database: 1,968,236
Effective search space: 61015316
Effective search space used: 61015316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.3 bits)