BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10374
(65 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8I7D9|SC61G_CIOIN Protein transport protein Sec61 subunit gamma OS=Ciona
intestinalis GN=SEC61G PE=3 SV=1
Length = 68
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/52 (88%), Positives = 50/52 (96%)
Query: 7 GSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRCTKPDR+EFQKIA+ATAIGF+IMGFIGFFVKLIHIPINNIIV
Sbjct: 15 AKDSIRLVKRCTKPDRKEFQKIAVATAIGFAIMGFIGFFVKLIHIPINNIIV 66
>sp|Q9V668|S61G1_DROME Protein transport protein Sec61 gamma-1 subunit OS=Drosophila
melanogaster GN=SEC61G1 PE=3 SV=1
Length = 68
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/52 (88%), Positives = 50/52 (96%)
Query: 7 GSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRCTKPDR+EFQKIAIATA+GF+IMGFIGFFVKLIHIPINNIIV
Sbjct: 15 AKDSIRLVKRCTKPDRKEFQKIAIATAVGFAIMGFIGFFVKLIHIPINNIIV 66
>sp|Q66KU2|SC61G_XENLA Protein transport protein Sec61 subunit gamma OS=Xenopus laevis
GN=sec61g PE=3 SV=1
Length = 68
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/50 (92%), Positives = 50/50 (100%)
Query: 9 NSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRCTKPDR+EFQKIA+ATAIGF+IMGFIGFFVKLIHIPINNIIV
Sbjct: 17 DSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIV 66
>sp|P60060|SC61G_MOUSE Protein transport protein Sec61 subunit gamma OS=Mus musculus
GN=Sec61g PE=2 SV=1
Length = 68
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 8 SNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRCTKPDR+EFQKIA+ATAIGF+IMGFIGFFVKLIHIPINNIIV
Sbjct: 16 KDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIV 66
>sp|P60059|SC61G_HUMAN Protein transport protein Sec61 subunit gamma OS=Homo sapiens
GN=SEC61G PE=2 SV=1
Length = 68
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 8 SNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRCTKPDR+EFQKIA+ATAIGF+IMGFIGFFVKLIHIPINNIIV
Sbjct: 16 KDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIV 66
>sp|P60058|SC61G_CANFA Protein transport protein Sec61 subunit gamma OS=Canis familiaris
GN=SEC61G PE=1 SV=1
Length = 68
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 8 SNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRCTKPDR+EFQKIA+ATAIGF+IMGFIGFFVKLIHIPINNIIV
Sbjct: 16 KDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIV 66
>sp|Q3T104|SC61G_BOVIN Protein transport protein Sec61 subunit gamma OS=Bos taurus
GN=SEC61G PE=3 SV=1
Length = 68
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 8 SNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRCTKPDR+EFQKIA+ATAIGF+IMGFIGFFVKLIHIPINNIIV
Sbjct: 16 KDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIV 66
>sp|Q7SZU9|SC61G_GADMO Protein transport protein Sec61 subunit gamma OS=Gadus morhua
GN=sec61g PE=3 SV=1
Length = 68
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 8 SNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRCTKPDR+EFQKIA+ATAIGF+IMGFIGFFVKLIHIPINNIIV
Sbjct: 16 KDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIV 66
>sp|Q7T207|SC61G_HARAN Protein transport protein Sec61 subunit gamma OS=Harpagifer
antarcticus GN=sec61g PE=3 SV=1
Length = 68
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/51 (88%), Positives = 50/51 (98%)
Query: 8 SNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRCTKPDR+EFQK+A+ATAIGF+IMGFIGFFVKLIHIPINNIIV
Sbjct: 16 KDSIRLVKRCTKPDRKEFQKVAMATAIGFAIMGFIGFFVKLIHIPINNIIV 66
>sp|Q9VWE9|S61G2_DROME Protein transport protein Sec61 gamma-2 subunit OS=Drosophila
melanogaster GN=Sec61gamma PE=3 SV=1
Length = 68
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/52 (88%), Positives = 49/52 (94%)
Query: 7 GSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRCTKPDR+EFQKIAIATA+GF IMGFIGFFVKLIHIPINNIIV
Sbjct: 15 AKDSIRLVKRCTKPDRKEFQKIAIATAVGFCIMGFIGFFVKLIHIPINNIIV 66
>sp|Q7Z1B8|S61G1_GRYOR Protein transport protein Sec61 subunit gamma OS=Gryllotalpa
orientalis GN=SEC61G PE=3 SV=1
Length = 68
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/52 (88%), Positives = 49/52 (94%)
Query: 7 GSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRCTKPDR+EFQKIA+ATAIGF IMGFIGFFVKLIHIPINNIIV
Sbjct: 15 AKDSIRLVKRCTKPDRKEFQKIAVATAIGFCIMGFIGFFVKLIHIPINNIIV 66
>sp|Q962X7|SC61G_BRABE Protein transport protein Sec61 subunit gamma OS=Branchiostoma
belcheri GN=SEC61G PE=3 SV=1
Length = 68
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/52 (86%), Positives = 49/52 (94%)
Query: 7 GSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+S RLVKRCTKPDR+EFQKIA+ATAIGF+IMGFIGFFVKLIHIPINNIIV
Sbjct: 15 AKDSYRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIV 66
>sp|Q19967|SC61G_CAEEL Protein transport protein Sec61 subunit gamma OS=Caenorhabditis
elegans GN=emo-1 PE=2 SV=1
Length = 68
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/50 (88%), Positives = 49/50 (98%)
Query: 9 NSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+S RLVKRCTKPDR+E+QKIA+ATAIGF+IMGFIGFFVKLIHIPINNIIV
Sbjct: 17 DSYRLVKRCTKPDRKEYQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIV 66
>sp|Q54JV6|SC61G_DICDI Protein transport protein Sec61 subunit gamma OS=Dictyostelium
discoideum GN=sec61g PE=3 SV=1
Length = 69
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 47/52 (90%)
Query: 7 GSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
NSIRL K+CTKPD +EFQKIA+AT IGF+IMGFIGFFVKLIHIPINNI+V
Sbjct: 15 AKNSIRLFKKCTKPDAQEFQKIALATLIGFAIMGFIGFFVKLIHIPINNILV 66
>sp|P0DI75|S61G2_ARATH Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis
thaliana GN=SEC61G2 PE=3 SV=1
Length = 69
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 45/52 (86%)
Query: 7 GSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRC KPDR+EF K+A+ TAIGF +MGF+GFFVKLI IPINNIIV
Sbjct: 15 AKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIV 66
>sp|P0DI74|S61G1_ARATH Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis
thaliana GN=SEC61G1 PE=3 SV=1
Length = 69
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 45/52 (86%)
Query: 7 GSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+SIRLVKRC KPDR+EF K+A+ TAIGF +MGF+GFFVKLI IPINNIIV
Sbjct: 15 AKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIV 66
>sp|P38385|SC61G_ORYSJ Protein transport protein Sec61 subunit gamma OS=Oryza sativa
subsp. japonica GN=Os02g0178400 PE=3 SV=1
Length = 69
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 44/52 (84%)
Query: 7 GSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+S+RLVKRC KPDR+EF K+A TAIGF +MGF+GFFVKLI IPINNIIV
Sbjct: 15 AKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIPINNIIV 66
>sp|Q9SMP2|S61G3_ARATH Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis
thaliana GN=SEC61G3 PE=3 SV=1
Length = 69
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 7 GSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+S+RLV+RC KPDR+EF K+A+ TAIGF +MGF+GFFVKL+ IPINNIIV
Sbjct: 15 AKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIPINNIIV 66
>sp|Q9C2D4|SC61G_NEUCR Probable protein transport protein Sec61 subunit gamma
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=9G6.310 PE=3 SV=2
Length = 70
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 8 SNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+ I+ +K+C KPDRREF KI+ A GF IMG +G+ VKLIHIP+N ++V
Sbjct: 17 KDGIQFIKKCQKPDRREFIKISQAVGTGFLIMGAVGYLVKLIHIPLNQVLV 67
>sp|Q09827|SC61G_SCHPO Probable protein transport protein Sec61 subunit gamma
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sss1 PE=3 SV=1
Length = 70
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 14 VKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+KRC KPDR+EF I+ A A GF +MG IG+ +KLIHIPIN ++V
Sbjct: 23 IKRCVKPDRKEFLSISKAVATGFVLMGLIGYIIKLIHIPINKVLV 67
>sp|P35179|SC61G_YEAST Protein transport protein SSS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSS1 PE=1 SV=2
Length = 80
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 16 RCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
+C KPD +E+ KI A IGF +G IG+ +KLIHIPI +IV
Sbjct: 38 KCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIPIRYVIV 80
>sp|Q8SRW9|SC61G_ENCCU Probable protein transport protein Sec61 subunit gamma
OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU05_0885 PE=3 SV=1
Length = 72
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 10 SIRL-VKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
SIRL K+C +P +E AIG +G +G+ +KLIHIPINNIIV
Sbjct: 17 SIRLFSKKCVRPSGKELSMSIKRHAIGIGFLGILGYAIKLIHIPINNIIV 66
>sp|Q6LXB7|SECE_METMP Preprotein translocase subunit SecE OS=Methanococcus maripaludis
(strain S2 / LL) GN=secE PE=3 SV=2
Length = 69
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 19 KPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIVL 59
KP R+E+ I+ T +G ++GF+GF +IH+PI + L
Sbjct: 29 KPTRQEYITISKVTGLGICLLGFVGF---VIHVPITYLKAL 66
>sp|Q5V456|SECE_HALMA Preprotein translocase subunit SecE OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=secE PE=3 SV=1
Length = 59
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 1 MDAAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFV 46
MD + ++ IR++K + P EF +IA G +++G +GF +
Sbjct: 1 MDVPYDLTSYIRVLKLASTPSWEEFSQIAKIAGAGIALVGLLGFII 46
>sp|Q18KS3|SECE_HALWD Preprotein translocase subunit SecE OS=Haloquadratum walsbyi
(strain DSM 16790) GN=secE PE=3 SV=1
Length = 57
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 1 MDAAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFV 46
MD + S+ +R++K + P EF +I + G +GF+GF +
Sbjct: 1 MDVKIELSSYVRVLKLASTPSWNEFSQIGLIAGAGIVFVGFLGFLI 46
>sp|Q3ITN6|SECE_NATPD Preprotein translocase subunit SecE OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=secE PE=3 SV=1
Length = 57
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 8 SNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFV 46
++ IR++K + P EF K+A +G ++GFIGF +
Sbjct: 8 TSYIRVLKLASTPTWDEFSKVATIAGLGILLVGFIGFVI 46
>sp|Q12UQ2|SECE_METBU Preprotein translocase subunit SecE OS=Methanococcoides burtonii
(strain DSM 6242) GN=secE PE=3 SV=1
Length = 69
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 11 IRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGF--FVKLIHIP 52
+R++K KP R EF I+ G ++GF+GF +V L +P
Sbjct: 23 LRVLKLSKKPSREEFLMISKVAGAGILVIGFVGFLIYVLLTEVP 66
>sp|Q57817|SECE_METJA Preprotein translocase subunit SecE OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=secE PE=1 SV=1
Length = 74
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 19 KPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNI 56
KP + E+ +A TA+G S++G IG+ +IH+P I
Sbjct: 28 KPTKDEYLAVAKVTALGISLLGIIGY---IIHVPATYI 62
>sp|B9LV21|SECE_HALLT Preprotein translocase subunit SecE OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=secE PE=3 SV=1
Length = 58
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 1 MDAAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFV 46
MD + ++ IR++K + P EF +++ G ++GFIGF +
Sbjct: 1 MDVPYDLNSYIRVLKLASTPSTDEFLQVSKIAGAGILLIGFIGFLM 46
>sp|Q9HS72|SECE_HALSA Preprotein translocase subunit SecE OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=secE PE=3
SV=1
Length = 57
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 1 MDAAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNII 57
MD + S R+++ + P EF +IA G ++G IGF V LI I ++I
Sbjct: 1 MDVPLELSAYTRVLRLASTPSWEEFSQIAKIAGAGILLIGAIGFLVFLIMGGIVSVI 57
>sp|B0R382|SECE_HALS3 Preprotein translocase subunit SecE OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=secE PE=3 SV=1
Length = 57
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 1 MDAAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNII 57
MD + S R+++ + P EF +IA G ++G IGF V LI I ++I
Sbjct: 1 MDVPLELSAYTRVLRLASTPSWEEFSQIAKIAGAGILLIGAIGFLVFLIMGGIVSVI 57
>sp|Q9V2S5|SECE_HALMT Preprotein translocase subunit SecE OS=Haloferax mediterranei
(strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 /
NCIMB 2177 / R-4) GN=secE PE=3 SV=1
Length = 57
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 1 MDAAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFV 46
MD + ++ +R++K + P +EF +I+ G ++G +GF +
Sbjct: 1 MDVKYDLNSYVRVLKLASTPSWQEFSQISKIAGAGIFLVGLLGFII 46
>sp|Q46EU5|SECE_METBF Preprotein translocase subunit SecE OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=secE PE=3 SV=1
Length = 71
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 11 IRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGF--FVKLIHIP 52
+R++K KP R EF IA +G +G IGF +V L +P
Sbjct: 23 LRVLKLTRKPSREEFLTIAKVAGVGILAVGAIGFIIYVLLTMLP 66
>sp|P58198|SECE_AERPE Preprotein translocase subunit SecE OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=secE PE=3 SV=2
Length = 60
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 12 RLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINN 55
R++ KPD E+ + +GF+++G IG+ + L +I + +
Sbjct: 16 RILTLARKPDEEEYSLLLKLNLLGFALVGGIGYLIHLGYIILTS 59
>sp|Q8TI84|SECE_METAC Preprotein translocase subunit SecE OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=secE PE=3 SV=1
Length = 71
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 11 IRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGF--FVKLIHIP 52
+R++K KP R EF IA G +G IGF +V L +P
Sbjct: 23 LRVLKLTKKPSREEFLTIAKVAGAGILAVGAIGFIIYVLLTMLP 66
>sp|Q8PY55|SECE_METMA Preprotein translocase subunit SecE OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=secE PE=3 SV=1
Length = 71
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 11 IRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGF--FVKLIHIP 52
+R++K KP R EF IA G +G +GF +V L +P
Sbjct: 23 LRVLKLTKKPSREEFLTIAKVAGAGILAVGAVGFIIYVLLTMLP 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.333 0.145 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,482,499
Number of Sequences: 539616
Number of extensions: 542578
Number of successful extensions: 2209
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2168
Number of HSP's gapped (non-prelim): 41
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)