Query psy10374
Match_columns 65
No_of_seqs 119 out of 231
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 16:15:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_B SEC61gamma, protein tra 100.0 7.4E-35 2.5E-39 176.0 5.9 59 2-60 10-68 (68)
2 2ww9_B Protein transport prote 100.0 1.4E-32 4.9E-37 170.5 6.6 56 3-58 25-80 (80)
3 1rh5_B Preprotein translocase 100.0 1.7E-30 5.9E-35 159.0 5.3 58 2-59 11-68 (74)
4 3mp7_B Preprotein translocase 99.9 3.6E-27 1.2E-31 139.7 5.3 52 3-54 8-59 (61)
5 3bo0_B Preprotein translocase 99.6 6.3E-16 2.2E-20 90.0 3.6 55 3-57 10-64 (65)
6 3dl8_C SECE; RECA-type ATPase 92.7 0.073 2.5E-06 30.5 2.3 48 3-50 4-51 (65)
7 3j01_B Preprotein translocase 85.4 0.19 6.6E-06 31.9 0.4 48 3-50 57-104 (116)
8 2zjs_E Preprotein translocase 83.9 0.2 6.8E-06 28.1 -0.1 49 2-50 4-52 (60)
9 3din_D Preprotein translocase 82.7 0.077 2.6E-06 30.4 -2.2 48 3-50 4-51 (65)
10 3bo0_B Preprotein translocase 71.8 7.5 0.00026 21.4 4.2 50 2-51 5-55 (65)
11 2da7_A Zinc finger homeobox pr 68.2 3.7 0.00013 24.3 2.4 20 15-34 25-44 (71)
12 2a26_A Calcyclin-binding prote 56.2 8.4 0.00029 21.1 2.3 29 2-30 8-36 (50)
13 1pp9_D Cytochrome C-1, cytochr 55.5 50 0.0017 23.1 6.8 45 3-47 179-223 (241)
14 1ysm_A Calcyclin-binding prote 54.3 19 0.00066 21.2 3.9 29 2-30 7-35 (77)
15 2yiu_B Cytochrome C1, heme pro 50.2 66 0.0022 22.9 6.8 45 3-47 205-249 (263)
16 3nau_A Zinc fingers and homeob 49.7 17 0.00058 20.9 3.0 28 7-34 16-43 (66)
17 2qjy_B Cytochrome C1; cytochro 49.6 68 0.0023 22.9 6.8 45 3-47 204-248 (269)
18 1zrt_D Cytochrome C1; cytochro 49.0 68 0.0023 22.7 6.8 45 3-47 202-246 (258)
19 3cx5_D Cytochrome C1, heme pro 48.8 67 0.0023 22.6 6.8 45 3-47 183-227 (248)
20 1s0p_A CAP, adenylyl cyclase-a 47.4 15 0.00053 24.5 3.0 22 9-30 43-64 (176)
21 1wq6_A AML1-ETO; NHR2, oncopro 47.2 6.1 0.00021 23.6 0.8 30 1-30 34-63 (72)
22 3cx5_E Cytochrome B-C1 complex 46.0 40 0.0014 22.0 4.8 36 17-52 17-52 (185)
23 3hd7_A Vesicle-associated memb 45.7 38 0.0013 19.9 4.3 34 6-39 45-78 (91)
24 3l9k_W Dynein intermediate cha 44.2 14 0.00048 19.4 1.9 16 2-17 14-29 (38)
25 3arc_J Photosystem II reaction 36.9 47 0.0016 17.7 3.3 18 30-47 13-30 (40)
26 2ecc_A Homeobox and leucine zi 35.2 29 0.00099 20.1 2.5 24 11-34 19-42 (76)
27 2pq4_B Periplasmic nitrate red 33.5 43 0.0015 16.8 2.7 17 19-35 2-18 (35)
28 2v52_M MKL/myocardin-like prot 27.8 39 0.0013 17.1 1.9 13 15-27 11-23 (32)
29 2q67_A Potassium channel prote 22.8 82 0.0028 18.6 3.1 37 9-45 7-43 (114)
30 1dtc_A Acetyl-delta-toxin; NMR 22.7 64 0.0022 15.6 2.0 16 38-53 5-20 (26)
31 2ly9_A Zinc fingers and homeob 22.4 92 0.0032 16.7 3.0 25 10-34 21-45 (74)
32 1ps1_A Pentalenene synthase; a 21.5 1.4E+02 0.0047 20.0 4.3 25 18-42 161-186 (337)
33 3kb9_A EPI-isozizaene synthase 21.1 2.2E+02 0.0075 19.9 5.9 24 18-41 204-227 (382)
34 2kog_A Vesicle-associated memb 20.2 53 0.0018 20.4 1.8 26 9-34 76-101 (119)
35 2jln_A MHP1; hydantoin, transp 20.2 1.1E+02 0.0037 22.4 3.8 38 7-44 227-268 (501)
36 1ig7_A Homeotic protein MSX-1; 20.0 1E+02 0.0035 15.7 2.8 23 12-34 17-39 (58)
No 1
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=7.4e-35 Score=176.00 Aligned_cols=59 Identities=78% Similarity=1.171 Sum_probs=57.5
Q ss_pred chHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeecc
Q psy10374 2 DAAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIVLR 60 (65)
Q Consensus 2 ~~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIkLI~ipInniivg~ 60 (65)
.+++|++||+|++++|+|||||||+++++++++||++||+|||+|||||+||||++|||
T Consensus 10 ~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~IklI~ipinniivg~ 68 (68)
T 2wwb_B 10 PSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG 68 (68)
T ss_dssp THHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHHHHHGGGTSCSSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 47899999999999999999999999999999999999999999999999999999996
No 2
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=99.97 E-value=1.4e-32 Score=170.53 Aligned_cols=56 Identities=41% Similarity=0.771 Sum_probs=55.0
Q ss_pred hHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceee
Q psy10374 3 AAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58 (65)
Q Consensus 3 ~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIkLI~ipInniiv 58 (65)
+++|++||+|++++|+|||||||+++++++++||++||+|||+|||||+|||||||
T Consensus 25 ~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkLI~iPInnIiv 80 (80)
T 2ww9_B 25 PVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIPIRYVIV 80 (80)
T ss_dssp HHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 68999999999999999999999999999999999999999999999999999986
No 3
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=99.96 E-value=1.7e-30 Score=158.95 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=54.9
Q ss_pred chHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeec
Q psy10374 2 DAAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIVL 59 (65)
Q Consensus 2 ~~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIkLI~ipInniivg 59 (65)
.+++|++||+|++++|+|||||||+++++++++||++||+|||+|||+|+||||++..
T Consensus 11 ~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIkli~ipIn~ii~~ 68 (74)
T 1rh5_B 11 QLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILKP 68 (74)
T ss_dssp -CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3689999999999999999999999999999999999999999999999999999875
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=99.94 E-value=3.6e-27 Score=139.68 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=50.4
Q ss_pred hHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10374 3 AAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPIN 54 (65)
Q Consensus 3 ~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIkLI~ipIn 54 (65)
+++|++||+|++++|+|||||||+++++++++||++||+|||+|||+|+.++
T Consensus 8 ~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikli~~~l~ 59 (61)
T 3mp7_B 8 IRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIRIVGILIL 59 (61)
T ss_dssp CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999876
No 5
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=99.59 E-value=6.3e-16 Score=90.01 Aligned_cols=55 Identities=25% Similarity=0.507 Sum_probs=52.5
Q ss_pred hHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccee
Q psy10374 3 AAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNII 57 (65)
Q Consensus 3 ~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIkLI~ipInnii 57 (65)
++++.+|++|+...|+||||+||.++++.|++|++++|++||+++++++++++++
T Consensus 10 ~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~lid~~i~~~l 64 (65)
T 3bo0_B 10 AREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 64 (65)
T ss_dssp HHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHC
T ss_pred HHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999864
No 6
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=92.66 E-value=0.073 Score=30.49 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=15.9
Q ss_pred hHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10374 3 AAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIH 50 (65)
Q Consensus 3 ~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIkLI~ 50 (65)
+.+|++|.+.=+||.+=|+|+|-.+...++.+-.++++++=+.+-.++
T Consensus 4 ~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~v~i~~~~i~~vD~~~ 51 (65)
T 3dl8_C 4 LKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTF 51 (65)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999888888777777766555544443
No 7
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=85.42 E-value=0.19 Score=31.90 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=38.4
Q ss_pred hHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10374 3 AAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIH 50 (65)
Q Consensus 3 ~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIkLI~ 50 (65)
+.+|.+|.+.=+||.+=|+|+|-.+...++.+-.++++.+=+.+-.++
T Consensus 57 ~~~F~kev~~ElkKV~WPtr~E~~~~T~vViv~vii~al~l~~vD~~~ 104 (116)
T 3j01_B 57 TVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGIL 104 (116)
T ss_dssp TTTCSSSHHHHHHHHHTTTTTSCHHHHHHHHTTHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhheeeCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999988888777777776655554444
No 8
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=83.95 E-value=0.2 Score=28.08 Aligned_cols=49 Identities=12% Similarity=-0.067 Sum_probs=32.2
Q ss_pred chHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10374 2 DAAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIH 50 (65)
Q Consensus 2 ~~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIkLI~ 50 (65)
++.+|++|.+.=+||.+=|+|+|-.+...++.+-.++++++=+.+-.++
T Consensus 4 ~~~~f~~~v~~ElkKV~WPtr~e~~~~t~vViv~v~i~~~~~~~vD~~~ 52 (60)
T 2zjs_E 4 RLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVF 52 (60)
T ss_dssp --------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888889999999999999888888777777776655554443
No 9
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=82.66 E-value=0.077 Score=30.38 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=32.3
Q ss_pred hHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10374 3 AAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIH 50 (65)
Q Consensus 3 ~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIkLI~ 50 (65)
+.+|++|.+.=+|+.+=|+|+|-.+...++.+-.++++++=+.+-.++
T Consensus 4 ~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i~~~~i~~vD~~~ 51 (65)
T 3din_D 4 LRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIF 51 (65)
T ss_dssp ------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999988887777777666666555444433
No 10
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=71.81 E-value=7.5 Score=21.42 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=40.4
Q ss_pred chHHhhHHHHHHHhHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10374 2 DAAHKGSNSIRLVKRCTKPDRREF-QKIAIATAIGFSIMGFIGFFVKLIHI 51 (65)
Q Consensus 2 ~~~~~~k~~~r~lk~c~KPdr~Ef-~~i~k~~~iG~~imG~IGfiIkLI~i 51 (65)
.+.+|++|.++=+++...|+|++= ....+++..-.+.+.++|++-.++..
T Consensus 5 ~~~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~l 55 (65)
T 3bo0_B 5 ATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHV 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 467899999999999999999664 56667778888888888888766553
No 11
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.17 E-value=3.7 Score=24.33 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=16.8
Q ss_pred hHhcCCCHHHHHHHHHHHHH
Q psy10374 15 KRCTKPDRREFQKIAIATAI 34 (65)
Q Consensus 15 k~c~KPdr~Ef~~i~k~~~i 34 (65)
....+|+.+|..++|..+++
T Consensus 25 ~~n~~Ps~eei~~LA~~lgL 44 (71)
T 2da7_A 25 AMNMEPNSDELLKISIAVGL 44 (71)
T ss_dssp HHCSSCCHHHHHHHHHHHTC
T ss_pred HhCCCCCHHHHHHHHHHhCC
Confidence 45599999999999988764
No 12
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=56.25 E-value=8.4 Score=21.13 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=24.8
Q ss_pred chHHhhHHHHHHHhHhcCCCHHHHHHHHH
Q psy10374 2 DAAHKGSNSIRLVKRCTKPDRREFQKIAI 30 (65)
Q Consensus 2 ~~~~~~k~~~r~lk~c~KPdr~Ef~~i~k 30 (65)
+++.++.+.++++..|+.|.-+++++.-.
T Consensus 8 eL~~DL~El~~Ll~~AkR~rVk~~L~~ei 36 (50)
T 2a26_A 8 ELQKDLEEVKVLLEKATRKRVRDALTAEK 36 (50)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46788999999999999999998876543
No 13
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=55.46 E-value=50 Score=23.10 Aligned_cols=45 Identities=4% Similarity=0.217 Sum_probs=38.6
Q ss_pred hHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10374 3 AAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVK 47 (65)
Q Consensus 3 ~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIk 47 (65)
..+..+|-..+|.-+..|.++|=+++-.-+.+-++++.++.|..|
T Consensus 179 ~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y~~k 223 (241)
T 1pp9_D 179 MSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMK 223 (241)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999988888887788777777654
No 14
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=54.31 E-value=19 Score=21.18 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=25.1
Q ss_pred chHHhhHHHHHHHhHhcCCCHHHHHHHHH
Q psy10374 2 DAAHKGSNSIRLVKRCTKPDRREFQKIAI 30 (65)
Q Consensus 2 ~~~~~~k~~~r~lk~c~KPdr~Ef~~i~k 30 (65)
+++.++.+.++++..|+.|.-++++..-+
T Consensus 7 eL~~DLeEl~~Ll~~AkR~rVk~~L~~ei 35 (77)
T 1ysm_A 7 ELQKDLEEVKVLLEKSTRKRLRDTLTSEK 35 (77)
T ss_dssp HHHHHHHHHHHHHHHTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 47889999999999999999999886543
No 15
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=50.23 E-value=66 Score=22.87 Aligned_cols=45 Identities=4% Similarity=0.197 Sum_probs=36.2
Q ss_pred hHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10374 3 AAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVK 47 (65)
Q Consensus 3 ~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIk 47 (65)
+.+..+|-..||.-+..|..+|=+++-.-+.+-++++.++.|..|
T Consensus 205 ~~q~a~DVvaFL~waaEP~~~~Rk~lG~~vl~fL~il~~l~y~~k 249 (263)
T 2yiu_B 205 VDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLYLTN 249 (263)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999988877766666666666666654
No 16
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=49.70 E-value=17 Score=20.87 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=22.2
Q ss_pred hHHHHHHHhHhcCCCHHHHHHHHHHHHH
Q psy10374 7 GSNSIRLVKRCTKPDRREFQKIAIATAI 34 (65)
Q Consensus 7 ~k~~~r~lk~c~KPdr~Ef~~i~k~~~i 34 (65)
+..-.+-...+..||.+|...+|..+++
T Consensus 16 l~~LE~~F~~~~YPs~~er~eLA~~tgL 43 (66)
T 3nau_A 16 IAHLKASFLQSQFPDDAEVYRLIEVTGL 43 (66)
T ss_dssp HHHHHHHHHGGGSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCc
Confidence 3444556678999999999999998864
No 17
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=49.55 E-value=68 Score=22.89 Aligned_cols=45 Identities=2% Similarity=0.144 Sum_probs=38.1
Q ss_pred hHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10374 3 AAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVK 47 (65)
Q Consensus 3 ~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIk 47 (65)
+.+..+|-..||.-+..|..+|=+++-..+.+-++++.++.|..|
T Consensus 204 ~~q~a~DVvaFL~waaEP~~~~Rk~lG~~Vl~fL~il~~l~y~~k 248 (269)
T 2qjy_B 204 VHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTVLSVLLYLTN 248 (269)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999988877777777777777655
No 18
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=49.00 E-value=68 Score=22.70 Aligned_cols=45 Identities=2% Similarity=0.193 Sum_probs=37.9
Q ss_pred hHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10374 3 AAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVK 47 (65)
Q Consensus 3 ~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIk 47 (65)
+.+..+|-..||.-+..|..+|=+++-..+.+-++++.++.|..|
T Consensus 202 ~~q~a~DVv~FL~waaEP~~~~Rk~~G~~vl~fL~il~~l~y~~k 246 (258)
T 1zrt_D 202 VDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLYLTN 246 (258)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999888877777777777777654
No 19
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=48.80 E-value=67 Score=22.57 Aligned_cols=45 Identities=18% Similarity=0.441 Sum_probs=38.1
Q ss_pred hHHhhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10374 3 AAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVK 47 (65)
Q Consensus 3 ~~~~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIk 47 (65)
..+..+|-..||.-+..|..+|=+++-.-+.+-++++.++.|..|
T Consensus 183 ~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y~~k 227 (248)
T 3cx5_D 183 TSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVK 227 (248)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999988888777777777777654
No 20
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=47.44 E-value=15 Score=24.52 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=15.6
Q ss_pred HHHHHHhHhcCCCHHHHHHHHH
Q psy10374 9 NSIRLVKRCTKPDRREFQKIAI 30 (65)
Q Consensus 9 ~~~r~lk~c~KPdr~Ef~~i~k 30 (65)
+...+-..|+|||.+++...++
T Consensus 43 ~~L~~as~~kKP~~~~~~~lL~ 64 (176)
T 1s0p_A 43 ALINTASQSKKPSQETLLELIK 64 (176)
T ss_dssp HHHHHHHHEECCCHHHHHHHTH
T ss_pred HHHHHHHhcCCCCchhHHHHHH
Confidence 3445567899999988775544
No 21
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=47.23 E-value=6.1 Score=23.60 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=23.4
Q ss_pred CchHHhhHHHHHHHhHhcCCCHHHHHHHHH
Q psy10374 1 MDAAHKGSNSIRLVKRCTKPDRREFQKIAI 30 (65)
Q Consensus 1 m~~~~~~k~~~r~lk~c~KPdr~Ef~~i~k 30 (65)
||.-+..+-+.-+|+||..-||||...-++
T Consensus 34 ~~MVEKTrRsltvLrRcQe~dReeln~W~R 63 (72)
T 1wq6_A 34 MDMVEKTRRSLTVLRRCQEADREELNYWIR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345567778889999999999999876443
No 22
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=46.01 E-value=40 Score=22.02 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=27.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10374 17 CTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIP 52 (65)
Q Consensus 17 c~KPdr~Ef~~i~k~~~iG~~imG~IGfiIkLI~ip 52 (65)
...++|..|+..+-.++.+....|..+-+..++..+
T Consensus 17 ~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (185)
T 3cx5_E 17 NDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSM 52 (185)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 456789999999877776667777777777777654
No 23
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=45.68 E-value=38 Score=19.90 Aligned_cols=34 Identities=15% Similarity=-0.009 Sum_probs=25.7
Q ss_pred hhHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHH
Q psy10374 6 KGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIM 39 (65)
Q Consensus 6 ~~k~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~im 39 (65)
.-.++.+|-+.++|=.|+-+.+-.|...+-.+++
T Consensus 45 L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv 78 (91)
T 3hd7_A 45 LQAGASQFETSAAKLKRKYWWKNLKMMIILGVIC 78 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788889999999999999998765543333
No 24
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=44.16 E-value=14 Score=19.37 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=13.6
Q ss_pred chHHhhHHHHHHHhHh
Q psy10374 2 DAAHKGSNSIRLVKRC 17 (65)
Q Consensus 2 ~~~~~~k~~~r~lk~c 17 (65)
|+.+|+..+.|++.|+
T Consensus 14 ~F~~F~~rsskviERA 29 (38)
T 3l9k_W 14 NFQRFVVRAGRVIERA 29 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678999999999886
No 25
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=36.90 E-value=47 Score=17.66 Aligned_cols=18 Identities=28% Similarity=0.665 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10374 30 IATAIGFSIMGFIGFFVK 47 (65)
Q Consensus 30 k~~~iG~~imG~IGfiIk 47 (65)
-.+..|++++|++|-+.+
T Consensus 13 vgtv~G~~vi~~~giFfy 30 (40)
T 3arc_J 13 VATVAGMGVIVIVGLFFY 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhhhheeeEEEe
Confidence 356678899999998755
No 26
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=35.21 E-value=29 Score=20.12 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=19.6
Q ss_pred HHHHhHhcCCCHHHHHHHHHHHHH
Q psy10374 11 IRLVKRCTKPDRREFQKIAIATAI 34 (65)
Q Consensus 11 ~r~lk~c~KPdr~Ef~~i~k~~~i 34 (65)
.+-...+.-||.+|...+|..+++
T Consensus 19 e~~F~~~~YPs~~er~~LA~~tgL 42 (76)
T 2ecc_A 19 KSFFLQCQWARREDYQKLEQITGL 42 (76)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHTCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHCc
Confidence 344568899999999999988764
No 27
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=33.50 E-value=43 Score=16.82 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy10374 19 KPDRREFQKIAIATAIG 35 (65)
Q Consensus 19 KPdr~Ef~~i~k~~~iG 35 (65)
+.+|.+|+|..-+++..
T Consensus 2 ~lsRR~FLK~~aaa~Aa 18 (35)
T 2pq4_B 2 KLSRRSFMKANAVAAAA 18 (35)
T ss_dssp CCCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 57899999976655544
No 28
>2v52_M MKL/myocardin-like protein 1; structural protein/contractIle protein, structural protein, contractIle protein, nucleotide-binding; HET: LAB ATP; 1.45A {Mus musculus}
Probab=27.75 E-value=39 Score=17.07 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=9.9
Q ss_pred hHhcCCCHHHHHH
Q psy10374 15 KRCTKPDRREFQK 27 (65)
Q Consensus 15 k~c~KPdr~Ef~~ 27 (65)
+....|||+|..+
T Consensus 11 kl~~RPdR~eLV~ 23 (32)
T 2v52_M 11 KIRSRPERAELVR 23 (32)
T ss_dssp HHHTCCCHHHHHH
T ss_pred HHHcCCCHHHHHH
Confidence 4568999999743
No 29
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=22.83 E-value=82 Score=18.63 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=20.8
Q ss_pred HHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10374 9 NSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFF 45 (65)
Q Consensus 9 ~~~r~lk~c~KPdr~Ef~~i~k~~~iG~~imG~IGfi 45 (65)
...|+++++++--+++=...+-...+..++.|.++|.
T Consensus 7 ~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 43 (114)
T 2q67_A 7 TLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYS 43 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554433222235556666677777887775
No 30
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=22.70 E-value=64 Score=15.64 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhc
Q psy10374 38 IMGFIGFFVKLIHIPI 53 (65)
Q Consensus 38 imG~IGfiIkLI~ipI 53 (65)
+++.||=++|+|.-.+
T Consensus 5 IisTIgdfvKlI~~TV 20 (26)
T 1dtc_A 5 IISTIGDLVKWIIDTV 20 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788999999986443
No 31
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.38 E-value=92 Score=16.70 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=19.5
Q ss_pred HHHHHhHhcCCCHHHHHHHHHHHHH
Q psy10374 10 SIRLVKRCTKPDRREFQKIAIATAI 34 (65)
Q Consensus 10 ~~r~lk~c~KPdr~Ef~~i~k~~~i 34 (65)
-.+....+..|+.+|-..+|..+++
T Consensus 21 Le~~F~~~~yp~~~~r~~La~~l~l 45 (74)
T 2ly9_A 21 LKVSYLKNQFPHDSEIIRLMKITGL 45 (74)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCc
Confidence 3455677999999999998887654
No 32
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=21.52 E-value=1.4e+02 Score=20.02 Aligned_cols=25 Identities=4% Similarity=-0.081 Sum_probs=15.8
Q ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHH
Q psy10374 18 TKP-DRREFQKIAIATAIGFSIMGFI 42 (65)
Q Consensus 18 ~KP-dr~Ef~~i~k~~~iG~~imG~I 42 (65)
..| +-+||......+.-.-.++..+
T Consensus 161 ~~P~s~eEYl~~r~~s~g~~~~~~~~ 186 (337)
T 1ps1_A 161 APCDSAAQYLAMRRHTIGVQPTVDLA 186 (337)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCCHHHHHHHcccccchhhHHHHH
Confidence 469 9999999988876544444433
No 33
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=21.15 E-value=2.2e+02 Score=19.93 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=17.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Q psy10374 18 TKPDRREFQKIAIATAIGFSIMGF 41 (65)
Q Consensus 18 ~KPdr~Ef~~i~k~~~iG~~imG~ 41 (65)
..|+-+||......+.-.-.++..
T Consensus 204 ~vPs~eEYl~~r~~s~g~~~~~~l 227 (382)
T 3kb9_A 204 IVPGVEEYLELRRLTFAHWIWTDL 227 (382)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCCHHHHHHHHhhhcCHHHHHHH
Confidence 479999999998877654444443
No 34
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=20.22 E-value=53 Score=20.36 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=16.7
Q ss_pred HHHHHHhHhcCCCHHHHHHHHHHHHH
Q psy10374 9 NSIRLVKRCTKPDRREFQKIAIATAI 34 (65)
Q Consensus 9 ~~~r~lk~c~KPdr~Ef~~i~k~~~i 34 (65)
++.+|-+.++|-.|+-+.+-.|...+
T Consensus 76 ~S~~F~k~A~kl~rkmwwkn~K~~ii 101 (119)
T 2kog_A 76 GASQFETSAAKLKRKYWWKNLKMMII 101 (119)
T ss_dssp SSHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677777777666544
No 35
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=20.16 E-value=1.1e+02 Score=22.37 Aligned_cols=38 Identities=18% Similarity=0.045 Sum_probs=25.2
Q ss_pred hHHHHHHHhHhcCCCHHHHHH----HHHHHHHHHHHHHHHHH
Q psy10374 7 GSNSIRLVKRCTKPDRREFQK----IAIATAIGFSIMGFIGF 44 (65)
Q Consensus 7 ~k~~~r~lk~c~KPdr~Ef~~----i~k~~~iG~~imG~IGf 44 (65)
..|+.|..++-+.+.++-|.. ....+.+|..+...+..
T Consensus 227 ~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~ 268 (501)
T 2jln_A 227 IHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFG 268 (501)
T ss_dssp THHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHH
Confidence 568888887666667777777 66666666665544333
No 36
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=20.05 E-value=1e+02 Score=15.66 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=18.2
Q ss_pred HHHhHhcCCCHHHHHHHHHHHHH
Q psy10374 12 RLVKRCTKPDRREFQKIAIATAI 34 (65)
Q Consensus 12 r~lk~c~KPdr~Ef~~i~k~~~i 34 (65)
.....+..||.+|-..+|..+++
T Consensus 17 ~~F~~~~yp~~~~r~~La~~l~l 39 (58)
T 1ig7_A 17 RKFRQKQYLSIAERAEFSSSLSL 39 (58)
T ss_dssp HHHHHCSCCCHHHHHHHHHHTTC
T ss_pred HHHhcCCCcCHHHHHHHHHHHCc
Confidence 44578999999999888877654
Done!