RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10374
         (65 letters)



>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma;
          ribosome, protein EXIT tunnel, cotranslational protein
          translocation, protein conducting channel; 6.48A {Canis
          lupus familiaris}
          Length = 68

 Score = 92.5 bits (230), Expect = 3e-27
 Identities = 46/50 (92%), Positives = 50/50 (100%)

Query: 9  NSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
          +SIRLVKRCTKPDR+EFQKIA+ATAIGF+IMGFIGFFVKLIHIPINNIIV
Sbjct: 17 DSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIV 66


>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane,
          phospho signal sequence, membrane, ribosome, transport;
          8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
          Length = 80

 Score = 91.5 bits (227), Expect = 7e-27
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 9  NSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
             + + +C KPD +E+ KI  A  IGF  +G IG+ +KLIHIPI  +IV
Sbjct: 31 EGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIPIRYVIV 80


>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY,
          membrane protein, protein channels, protein transport;
          3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1
          PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
          Length = 74

 Score = 51.2 bits (122), Expect = 6e-11
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 8  SNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
              R+     KP + E+  +A  TA+G S++G IG+ + +    I  I+ 
Sbjct: 17 EECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILK 67


>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane
          protein complex, preprotein TRAN membrane insertion,;
          2.90A {Pyrococcus furiosus}
          Length = 61

 Score = 34.6 bits (79), Expect = 1e-04
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 8  SNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPI 53
            S R      KP+   +++ A  T +G  ++G IG    LI I  
Sbjct: 13 KESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGM---LIRIVG 55


>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics,
          center for structural genomics, JCSG, protein structure
          INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens
          str}
          Length = 508

 Score = 23.8 bits (52), Expect = 4.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 7  GSNSIRLV 14
          GSNS+RLV
Sbjct: 23 GSNSVRLV 30


>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP;
          2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
          Length = 800

 Score = 23.8 bits (51), Expect = 6.0
 Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 1  MDAAHKGSNSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNIIV 58
          M+     S +I+  ++ T         +     I  +++   G+++     P    + 
Sbjct: 1  MEVNRTVSPNIQTGRKTTN--SFLKSILIFTILISSTVLLVGGYWIFKEMAPRPKEVR 56


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.333    0.145    0.428 

Gapped
Lambda     K      H
   0.267   0.0555    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 986,004
Number of extensions: 44791
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 8
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 51 (23.8 bits)