RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10374
         (65 letters)



>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit
          {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 56

 Score = 70.4 bits (173), Expect = 3e-19
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 9  NSIRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGFFVKLIHIPINNII 57
             R+     KP + E+  +A  TA+G S++G IG+ + +    I  I+
Sbjct: 7  ECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 55


>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase
          associated protein, CAP {Dictyostelium discoideum
          [TaxId: 44689]}
          Length = 176

 Score = 22.4 bits (48), Expect = 4.7
 Identities = 3/34 (8%), Positives = 8/34 (23%), Gaps = 2/34 (5%)

Query: 11 IRLVKRCTKPDRREFQKIAIATAIGFSIMGFIGF 44
          I    +  KP +    +  +   +          
Sbjct: 45 INTASQSKKPSQETLLE--LIKPLNNFAAEVGKI 76


>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 336

 Score = 22.5 bits (48), Expect = 5.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 9   NSIRLVKRCTKPDRREFQKIA 29
           ++I L +R  K +  EF++IA
Sbjct: 310 DNISLAQRLEKHELIEFRRIA 330


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.145    0.428 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 239,578
Number of extensions: 8374
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 7
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 47 (22.0 bits)