Query psy10378
Match_columns 62
No_of_seqs 107 out of 447
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 16:19:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b4f_A EPHB2; SAM domain, EPH 99.8 6.2E-21 2.1E-25 105.4 6.3 60 1-60 23-82 (82)
2 1ucv_A Ephrin type-A receptor 99.8 1.7E-20 5.7E-25 103.6 6.3 59 1-59 19-77 (81)
3 3h8m_A Ephrin type-A receptor 99.8 2.3E-20 7.8E-25 105.2 6.6 54 1-54 37-90 (90)
4 3kka_C Ephrin type-A receptor 99.8 2.5E-20 8.5E-25 104.3 4.7 53 1-53 33-85 (86)
5 2eao_A Ephrin type-B receptor 99.8 4.9E-20 1.7E-24 105.0 5.8 60 1-60 34-93 (99)
6 1b0x_A Protein (EPHA4 receptor 99.8 7.2E-20 2.4E-24 103.5 6.3 56 1-56 38-93 (94)
7 2kso_A Ephrin type-A receptor 99.8 4.7E-20 1.6E-24 102.3 5.0 54 1-54 28-81 (82)
8 2e8n_A Ephrin type-A receptor 99.8 7.9E-20 2.7E-24 102.2 5.6 57 1-57 24-80 (88)
9 1x40_A ARAP2; ASAP-related pro 99.8 5.4E-20 1.9E-24 103.6 3.5 54 1-54 27-80 (91)
10 1v38_A SAM-domain protein sams 99.8 1.4E-19 4.7E-24 99.5 4.7 51 1-51 24-74 (78)
11 2y9u_A Tumor protein 63; apopt 99.8 3.7E-19 1.3E-23 96.2 6.1 52 1-53 16-67 (69)
12 2qkq_A Ephrin type-B receptor 99.8 1.1E-19 3.7E-24 100.6 3.4 54 1-54 27-80 (83)
13 2k4p_A Phosphatidylinositol-3, 99.8 6.1E-19 2.1E-23 98.7 4.5 49 1-49 38-86 (86)
14 3k1r_B Usher syndrome type-1G 99.7 3.9E-18 1.3E-22 93.0 6.6 55 1-57 14-68 (74)
15 2dl0_A SAM and SH3 domain-cont 99.7 1.5E-19 5E-24 103.1 0.7 54 1-54 35-88 (97)
16 3hil_A Ephrin type-A receptor 99.7 8.3E-19 2.8E-23 97.4 3.4 48 1-48 35-82 (82)
17 2kg5_A ARF-GAP, RHO-GAP domain 99.7 8.7E-19 3E-23 100.3 3.2 57 1-57 38-94 (100)
18 2y9t_A Tumor protein 63; apopt 99.7 2E-18 6.9E-23 96.0 4.1 52 1-53 18-69 (82)
19 2lmr_A ODIN, ankyrin repeat an 99.7 5.8E-18 2E-22 97.1 1.2 50 1-50 41-92 (101)
20 2eam_A Putative 47 kDa protein 99.7 6.6E-18 2.3E-22 92.8 1.3 50 1-50 24-75 (80)
21 3sei_A Caskin-1; SAM domain, p 99.7 1.5E-16 5E-21 96.1 5.6 52 1-52 91-142 (149)
22 2ke7_A Ankyrin repeat and ster 99.7 6E-17 2E-21 92.8 3.7 50 1-50 34-85 (103)
23 3bs5_B Connector enhancer of k 99.6 2.9E-16 1E-20 85.8 6.0 54 1-55 23-76 (80)
24 2ean_A Connector enhancer of k 99.6 2.2E-16 7.6E-21 87.0 5.3 54 1-55 27-80 (83)
25 2gle_A Neurabin-1; SAM domain, 99.6 3.7E-16 1.3E-20 84.3 5.4 52 1-53 21-72 (74)
26 3bq7_A Diacylglycerol kinase d 99.6 3.8E-16 1.3E-20 85.9 5.3 52 1-53 24-75 (81)
27 2f3n_A SH3 and multiple ankyri 99.6 1.6E-16 5.6E-21 86.5 3.0 52 1-53 19-70 (76)
28 3sei_A Caskin-1; SAM domain, p 99.6 6.5E-16 2.2E-20 93.2 3.9 49 1-50 22-70 (149)
29 3bs7_A Protein aveugle; sterIl 99.6 2.3E-15 7.7E-20 81.9 5.5 52 1-53 22-73 (78)
30 2kiv_A Ankyrin repeat and ster 99.5 9.6E-16 3.3E-20 92.2 1.8 51 1-51 26-78 (148)
31 2kiv_A Ankyrin repeat and ster 99.5 4.7E-15 1.6E-19 89.1 4.4 47 1-47 100-147 (148)
32 1wwv_A Connector enhancer of k 99.5 3.6E-15 1.2E-19 84.0 3.0 53 1-56 30-82 (91)
33 3bs5_A Protein aveugle; sterIl 99.5 1.5E-14 5.3E-19 83.2 5.4 52 1-53 42-93 (106)
34 2d3d_A VTS1 protein; RNA bindi 99.5 6.7E-14 2.3E-18 78.6 5.8 50 1-53 30-79 (88)
35 1ow5_A Serine/threonine-protei 99.5 2.4E-14 8.3E-19 79.8 3.5 53 1-53 27-79 (85)
36 2e8o_A SAM domain and HD domai 99.5 2.7E-14 9.3E-19 81.5 3.4 54 1-55 44-99 (103)
37 1v85_A Similar to ring finger 99.4 1.4E-13 4.9E-18 77.0 5.3 50 2-52 37-88 (91)
38 2es6_A VTS1P; SAM domain, prot 99.4 3.5E-13 1.2E-17 77.2 5.3 50 1-53 43-92 (101)
39 2b6g_A VTS1P; alpha-helix, pen 99.4 9.7E-13 3.3E-17 77.3 5.1 50 1-53 61-110 (119)
40 1kw4_A Polyhomeotic; SAM domai 99.3 5.3E-12 1.8E-16 70.6 5.3 51 1-53 32-83 (89)
41 1oxj_A RNA-binding protein sma 99.2 1.1E-11 3.6E-16 76.6 4.5 49 1-53 19-67 (173)
42 2d8c_A Phosphatidylcholine:cer 99.2 1E-11 3.5E-16 70.6 4.1 50 1-53 34-85 (97)
43 3tad_C Liprin-beta-1; protein 99.2 4.3E-11 1.5E-15 78.0 5.2 50 1-51 32-82 (265)
44 3tad_C Liprin-beta-1; protein 99.1 1E-10 3.5E-15 76.2 5.6 49 1-50 104-152 (265)
45 1pk1_B Sex COMB on midleg CG94 98.8 1.4E-08 4.9E-13 56.7 4.9 48 2-51 34-82 (89)
46 3tac_B Liprin-alpha-2; transfe 98.7 2.4E-08 8.4E-13 66.7 5.8 51 1-52 54-106 (334)
47 3tac_B Liprin-alpha-2; transfe 98.6 8.8E-08 3E-12 64.1 6.2 48 1-49 175-223 (334)
48 1uqv_A STE50 protein; SAM, ste 98.2 1.1E-06 3.7E-11 48.8 3.0 45 4-49 33-77 (85)
49 1dxs_A P53-like transcription 98.1 7.7E-06 2.6E-10 44.9 4.7 49 1-50 18-66 (80)
50 2k60_A Protein (stromal intera 97.9 4.9E-06 1.7E-10 50.4 2.1 45 1-46 96-145 (150)
51 2l5y_A Stromal interaction mol 97.9 2.5E-06 8.6E-11 51.6 0.7 41 1-42 96-140 (150)
52 2dkz_A Hypothetical protein LO 97.5 0.00011 3.6E-09 40.7 3.4 47 1-49 32-80 (84)
53 3idw_A Actin cytoskeleton-regu 97.4 0.00016 5.5E-09 38.9 3.3 46 2-49 20-65 (72)
54 1wcn_A Transcription elongatio 91.2 0.89 3E-05 23.6 5.4 40 5-45 20-60 (70)
55 1b22_A DNA repair protein RAD5 89.9 0.34 1.2E-05 27.6 3.2 44 4-48 37-81 (114)
56 2qol_A Ephrin receptor; recept 89.0 0.076 2.6E-06 34.4 0.0 23 1-23 351-373 (373)
57 1u9l_A Transcription elongatio 87.7 1.9 6.3E-05 22.4 5.6 43 5-48 19-62 (70)
58 1z3e_B DNA-directed RNA polyme 87.4 0.71 2.4E-05 24.3 3.2 24 6-29 22-45 (73)
59 1coo_A RNA polymerase alpha su 85.6 1.1 3.6E-05 25.1 3.5 25 5-29 36-60 (98)
60 3gfk_B DNA-directed RNA polyme 84.7 1.1 3.6E-05 24.1 3.1 44 5-55 28-71 (79)
61 2kz3_A Putative uncharacterize 82.7 3.1 0.00011 22.3 4.5 31 3-33 15-46 (83)
62 3k4g_A DNA-directed RNA polyme 81.9 1.6 5.5E-05 23.8 3.1 44 5-55 24-67 (86)
63 3lda_A DNA repair protein RAD5 80.2 4.6 0.00016 27.0 5.5 44 4-48 95-139 (400)
64 2ofk_A 3-methyladenine DNA gly 78.0 3.4 0.00012 25.4 4.0 43 4-49 56-100 (183)
65 2i1q_A DNA repair and recombin 78.0 5.4 0.00019 25.1 5.1 43 3-46 14-57 (322)
66 2jg6_A DNA-3-methyladenine gly 76.7 3.5 0.00012 25.4 3.8 43 4-49 56-100 (186)
67 1pzn_A RAD51, DNA repair and r 75.9 5.2 0.00018 26.0 4.7 43 3-46 46-89 (349)
68 2eap_A Lymphocyte cytosolic pr 63.8 7.9 0.00027 21.3 3.0 34 5-43 39-73 (90)
69 1y88_A Hypothetical protein AF 61.9 19 0.00066 22.1 4.9 43 6-49 154-196 (199)
70 3im1_A Protein SNU246, PRE-mRN 61.4 15 0.00053 23.5 4.6 41 6-47 171-212 (328)
71 2a1j_A DNA repair endonuclease 50.0 18 0.00062 17.9 2.8 20 13-33 24-43 (63)
72 2z43_A DNA repair and recombin 48.5 3.7 0.00013 26.1 0.0 44 3-47 23-67 (324)
73 3c1y_A DNA integrity scanning 46.3 38 0.0013 22.9 4.6 38 13-51 335-373 (377)
74 2zj8_A DNA helicase, putative 45.1 29 0.001 24.2 4.1 40 5-48 659-698 (720)
75 4glx_A DNA ligase; inhibitor, 43.4 23 0.00079 25.2 3.4 45 4-49 458-504 (586)
76 3u5c_P 40S ribosomal protein S 41.8 9.7 0.00033 22.5 1.1 23 7-30 14-36 (142)
77 2lpe_A Kinase suppressor of RA 40.2 27 0.00093 20.8 2.9 38 12-50 105-146 (149)
78 1z00_B DNA repair endonuclease 38.4 28 0.00095 18.4 2.5 32 13-45 38-69 (84)
79 3i9x_A MUTT/nudix family prote 37.4 40 0.0014 19.2 3.4 38 19-57 144-181 (187)
80 2qar_B Telsam domain; polymer, 37.2 50 0.0017 17.7 4.9 38 10-52 40-78 (93)
81 1g4y_B Calcium-activated potas 33.8 33 0.0011 19.2 2.4 15 35-49 57-71 (101)
82 1sv0_C Modulator of the activi 33.3 54 0.0018 17.0 5.0 33 9-46 40-73 (82)
83 3j20_T 30S ribosomal protein S 31.8 8.3 0.00028 22.6 -0.3 23 7-30 5-27 (132)
84 1v5w_A DMC1, meiotic recombina 30.4 11 0.00037 24.3 0.0 42 4-46 39-81 (343)
85 1x66_A Friend leukemia integra 30.0 61 0.0021 17.5 3.1 35 15-51 57-91 (98)
86 3iz6_R 40S ribosomal protein S 28.8 12 0.00041 22.5 0.0 24 6-30 22-45 (154)
87 4b21_A Probable DNA-3-methylad 28.4 1.1E+02 0.0036 18.8 5.3 21 13-33 95-115 (232)
88 1mpg_A ALKA, 3-methyladenine D 28.2 1.1E+02 0.0037 19.1 4.5 26 13-40 155-180 (282)
89 1kft_A UVRC, excinuclease ABC 28.0 63 0.0021 16.1 3.7 21 13-33 44-65 (78)
90 2if5_A Zinc finger and BTB dom 27.5 64 0.0022 16.9 2.9 21 30-50 1-21 (120)
91 3sjq_C Small conductance calci 27.2 51 0.0017 17.9 2.4 13 35-47 39-51 (87)
92 2va8_A SSO2462, SKI2-type heli 25.4 90 0.0031 21.7 4.0 38 6-46 671-708 (715)
93 2a1j_B DNA excision repair pro 25.3 78 0.0027 16.3 4.0 21 13-33 52-73 (91)
94 2gax_A Hypothetical protein AT 25.0 7.9 0.00027 22.3 -1.3 26 17-42 100-125 (135)
95 3lu0_A DNA-directed RNA polyme 24.5 16 0.00054 24.2 0.0 24 6-29 268-291 (329)
96 3s6i_A DNA-3-methyladenine gly 24.0 1.3E+02 0.0043 18.4 4.1 22 12-33 83-104 (228)
97 1z00_A DNA excision repair pro 23.8 82 0.0028 16.0 4.2 21 13-33 39-60 (89)
98 1uw0_A DNA ligase III; DNA rep 23.7 38 0.0013 18.9 1.5 32 23-54 72-103 (117)
99 1vq8_Y 50S ribosomal protein L 23.1 17 0.0006 22.8 0.0 42 8-50 31-73 (241)
100 4eo3_A Bacterioferritin comigr 22.4 82 0.0028 20.1 3.1 20 31-50 120-139 (322)
101 1x2i_A HEF helicase/nuclease; 21.7 80 0.0028 15.1 3.9 21 13-33 34-55 (75)
102 3h38_A TRNA nucleotidyl transf 21.2 85 0.0029 21.3 3.1 27 22-49 378-405 (441)
103 4ehp_B Catenin alpha-1; adhere 20.8 75 0.0025 17.9 2.3 30 25-54 46-75 (111)
104 1wwu_A Hypothetical protein FL 20.4 51 0.0018 18.2 1.6 36 15-53 50-85 (99)
No 1
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=99.84 E-value=6.2e-21 Score=105.36 Aligned_cols=60 Identities=38% Similarity=0.662 Sum_probs=54.6
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccCCCC
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF 60 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~~~~ 60 (62)
|++|.+.|.++||++++.++.++++||++|||+.+|||+||+++|+.++.++++.++++|
T Consensus 23 L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~~~~~~~~~~ 82 (82)
T 1b4f_A 23 MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMNQIQSVEV 82 (82)
T ss_dssp CGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHccccCCCC
Confidence 689999999999999999999999999999999999999999999999999987665543
No 2
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.82 E-value=1.7e-20 Score=103.62 Aligned_cols=59 Identities=53% Similarity=0.858 Sum_probs=55.5
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccCCC
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEG 59 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~~~ 59 (62)
|++|.+.|.++||++++.++.++++||++|||+.+|||+||+.+|+.++.++.+..+++
T Consensus 19 L~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~l~~~~~~~~~~~ 77 (81)
T 1ucv_A 19 MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTSTQGSG 77 (81)
T ss_dssp CGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHSCCSSCS
T ss_pred CHHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHHHHHHHhhcCCCC
Confidence 68999999999998899999999999999999999999999999999999998766654
No 3
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=105.24 Aligned_cols=54 Identities=57% Similarity=0.886 Sum_probs=51.5
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~ 54 (62)
|++|.+.|.++||++++.+..++++||++|||+.+|||+||+++|+.|+.+|++
T Consensus 37 L~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai~~Lr~qm~~ 90 (90)
T 3h8m_A 37 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQMLH 90 (90)
T ss_dssp CGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999988999999999999999999999999999999999999863
No 4
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=99.81 E-value=2.5e-20 Score=104.34 Aligned_cols=53 Identities=32% Similarity=0.656 Sum_probs=48.0
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
|++|.+.|..+||++++.+..++++||++|||+.+|||+||+++++.|+.+|.
T Consensus 33 L~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~Lr~qm~ 85 (86)
T 3kka_C 33 MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQVN 85 (86)
T ss_dssp CGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHCC----
T ss_pred cHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 68999999999998899999999999999999999999999999999998875
No 5
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.9e-20 Score=105.01 Aligned_cols=60 Identities=43% Similarity=0.667 Sum_probs=55.9
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccCCCC
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF 60 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~~~~ 60 (62)
|++|.++|.++||++++.++.|+++||++|||+.+|||+||+++|+.++.++.+..+.+|
T Consensus 34 L~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~l~~~~~~~~~~~~ 93 (99)
T 2eao_A 34 MVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQISQSPTAMA 93 (99)
T ss_dssp CGGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSCCCCCSC
T ss_pred cHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHhhccCCCCC
Confidence 689999999999988999999999999999999999999999999999999987666544
No 6
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=99.80 E-value=7.2e-20 Score=103.52 Aligned_cols=56 Identities=46% Similarity=0.735 Sum_probs=53.3
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhcc
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANL 56 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~ 56 (62)
|++|.+.|.++||++++.++.|+++||++|||+.+|||+||+.+|+.++.++.+.+
T Consensus 38 L~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~L~~~~~~~~ 93 (94)
T 1b0x_A 38 MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQQMH 93 (94)
T ss_dssp CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHHhccC
Confidence 68999999999999999999999999999999999999999999999999998643
No 7
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=99.80 E-value=4.7e-20 Score=102.25 Aligned_cols=54 Identities=31% Similarity=0.648 Sum_probs=51.6
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~ 54 (62)
|++|.+.|.++||++++.++.++++||++|||+.+|||+||+++|+.++.++.+
T Consensus 28 L~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~Lr~~~~~ 81 (82)
T 2kso_A 28 MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQVNT 81 (82)
T ss_dssp CTTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHHcc
Confidence 689999999999988999999999999999999999999999999999999863
No 8
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7.9e-20 Score=102.23 Aligned_cols=57 Identities=30% Similarity=0.559 Sum_probs=53.9
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccC
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLS 57 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~ 57 (62)
|++|.++|.++||++++.++.|+++||++|||+.+|||+||+++|+.++.++.+.+.
T Consensus 24 L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~l~~~~~~~~~ 80 (88)
T 2e8n_A 24 MQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKDQVNTVGI 80 (88)
T ss_dssp CGGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHhhcccCC
Confidence 789999999999988999999999999999999999999999999999999986654
No 9
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.79 E-value=5.4e-20 Score=103.61 Aligned_cols=54 Identities=20% Similarity=0.542 Sum_probs=52.0
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~ 54 (62)
|++|.++|.++||++++.++.|+++||++|||+.+|||+||+.+|+.|+.+++.
T Consensus 27 L~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L~~~~~~ 80 (91)
T 1x40_A 27 LEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKMQD 80 (91)
T ss_dssp CGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHHHHhhcCC
Confidence 789999999999999999999999999999999999999999999999999864
No 10
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=99.78 E-value=1.4e-19 Score=99.51 Aligned_cols=51 Identities=10% Similarity=0.273 Sum_probs=48.9
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~ 51 (62)
|++|.++|..+||++++.|..++++||.+|||+.+|||+||+.+++.|+++
T Consensus 24 L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~L~~~ 74 (78)
T 1v38_A 24 LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSG 74 (78)
T ss_dssp CGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999999999999999998754
No 11
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=99.78 E-value=3.7e-19 Score=96.25 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=50.0
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
|++|.++|.++||.+++.+.++|.+||.+|||+. ||||||+++|+.++.++.
T Consensus 16 m~~Y~d~F~~~g~~s~~~v~~lt~eDL~~~GIt~-ghqkkIl~siq~lr~~~~ 67 (69)
T 2y9u_A 16 CSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPE-QFRHAIWKGILDHRQLHE 67 (69)
T ss_dssp CGGGHHHHHTTTCCBHHHHTTCCHHHHHHTTCCH-HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCCcHHHHHHcCHHHHHhcCCCh-hhHHHHHHhHHHHHhccc
Confidence 6899999999999999999999999999999997 999999999999999875
No 12
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=100.61 Aligned_cols=54 Identities=41% Similarity=0.713 Sum_probs=47.0
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~ 54 (62)
|++|.+.|.++||.+++.++.++++||++|||+.+|||+||+++|+.++.++++
T Consensus 27 L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~~~~ 80 (83)
T 2qkq_A 27 MGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQAKP 80 (83)
T ss_dssp CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTC------
T ss_pred CHHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999889999999999999999999999999999999999999874
No 13
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=99.76 E-value=6.1e-19 Score=98.73 Aligned_cols=49 Identities=18% Similarity=0.439 Sum_probs=46.9
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~ 49 (62)
|++|.+.|.++||++++.|..++++||++|||+.+|||+||+.+|+.||
T Consensus 38 L~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~~LK 86 (86)
T 2k4p_A 38 LERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLSK 86 (86)
T ss_dssp CGGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence 7899999999999999999999999999999999999999999998764
No 14
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=93.03 Aligned_cols=55 Identities=16% Similarity=0.366 Sum_probs=52.0
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccC
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLS 57 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~ 57 (62)
|++|.+.|.++++ +++.+..++++||++|||+ +|||+||+++|+.++.++.+.+.
T Consensus 14 L~~Y~~~F~~~~i-d~e~l~~lt~~DL~~lGI~-~G~RkkIl~ai~~~~~~~~~p~~ 68 (74)
T 3k1r_B 14 MEDFAALLRQEKI-DLEALMLCSDLDLRSISVP-LGPREKILGAVRRRRQAMERPPA 68 (74)
T ss_dssp CGGGHHHHHHTTC-CHHHHTTCCHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHcCc-CHHHHhHCCHHHHHHcCCC-cchHHHHHHHHHHHHHHhcCCCC
Confidence 6899999999999 7999999999999999999 99999999999999999997654
No 15
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-19 Score=103.10 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=51.0
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~ 54 (62)
|+||+++|.++||++++.|.+|+++||++|||+.+||||||+++++.++.++.+
T Consensus 35 L~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~lr~~~~~ 88 (97)
T 2dl0_A 35 LPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPPGP 88 (97)
T ss_dssp CGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHTCCCCCCS
T ss_pred CHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHHHHcccCc
Confidence 789999999999988999999999999999999999999999999999877653
No 16
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=99.74 E-value=8.3e-19 Score=97.39 Aligned_cols=48 Identities=48% Similarity=0.822 Sum_probs=45.9
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l 48 (62)
|++|.+.|.++||++++.+..++++||++|||+.+||||||+++++.+
T Consensus 35 L~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~aiq~l 82 (82)
T 3hil_A 35 MKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGF 82 (82)
T ss_dssp CGGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCCHHHHHHHHHHHHhC
Confidence 789999999999988999999999999999999999999999999864
No 17
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=99.74 E-value=8.7e-19 Score=100.33 Aligned_cols=57 Identities=32% Similarity=0.506 Sum_probs=52.6
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccC
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLS 57 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~ 57 (62)
|++|.+.|.++||++++.++.++++||++|||+.+|||+||+++|+.++.+....+.
T Consensus 38 L~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~Lr~~~~~~p~ 94 (100)
T 2kg5_A 38 LEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEGSLDPK 94 (100)
T ss_dssp CGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTTTTCCCSCCC
T ss_pred CHHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHHHHhcccCCCC
Confidence 689999999999977999999999999999999999999999999999987765443
No 18
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=99.73 E-value=2e-18 Score=96.01 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=50.2
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
|++|.++|.++||.+++.+.+||.+||.+|||+. ||||||+++|+.++.++.
T Consensus 18 m~~Y~d~F~~~G~~sl~~V~~lt~eDL~~mGIt~-gHqkkIl~siq~lr~~~~ 69 (82)
T 2y9t_A 18 CSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPE-QFRHAIWKGILDHRQLHE 69 (82)
T ss_dssp CGGGHHHHHTTTCCBSGGGTTCCHHHHHHTTCCH-HHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHcCCCcHHHHHhcCHHHHHhcCCCh-hhHHHHHhhHHHHHHHhc
Confidence 6899999999999999999999999999999997 999999999999999985
No 19
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=99.68 E-value=5.8e-18 Score=97.12 Aligned_cols=50 Identities=14% Similarity=0.352 Sum_probs=47.2
Q ss_pred CcchHHHHhhcCcCcHHHHH--cCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAVV--RLTVAELNALGITLVGHQKKIMNSIQAMRT 50 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~--~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~ 50 (62)
|++|.+.|.++||++++.++ .+|++||++|||+.+|||+||+.+|+.|+.
T Consensus 41 L~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~L~~ 92 (101)
T 2lmr_A 41 LQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPK 92 (101)
T ss_dssp CGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHTSSS
T ss_pred CHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 78999999999998899998 999999999999999999999999998764
No 20
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=6.6e-18 Score=92.81 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=46.8
Q ss_pred CcchHHHHhhcCcCcHHHH--HcCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAV--VRLTVAELNALGITLVGHQKKIMNSIQAMRT 50 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~--~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~ 50 (62)
|++|.+.|.++||++++.+ ..|+++||++|||+.+|||+||+.+|+.|+.
T Consensus 24 L~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ai~~L~~ 75 (80)
T 2eam_A 24 LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPS 75 (80)
T ss_dssp CGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 6899999999999888888 7999999999999999999999999998874
No 21
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=99.65 E-value=1.5e-16 Score=96.11 Aligned_cols=52 Identities=27% Similarity=0.519 Sum_probs=49.0
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~ 52 (62)
|++|.+.|.++||++++.+..+|++||++|||+.+|||+||+.+|+.+++-.
T Consensus 91 L~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~l~~~~ 142 (149)
T 3sei_A 91 LAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAELR 142 (149)
T ss_dssp CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999889999999999999999999999999999999987643
No 22
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=99.65 E-value=6e-17 Score=92.78 Aligned_cols=50 Identities=20% Similarity=0.441 Sum_probs=47.1
Q ss_pred CcchHHHHhhcCcCcHHHH--HcCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAV--VRLTVAELNALGITLVGHQKKIMNSIQAMRT 50 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~--~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~ 50 (62)
|++|.++|.++||++.+.+ ..||++||++|||+.+|||+||+.+|+.++.
T Consensus 34 L~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~~GhRkkIl~ai~~L~~ 85 (103)
T 2ke7_A 34 LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPK 85 (103)
T ss_dssp CTTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCCHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCCHHHHHHHHHHHHHHHh
Confidence 6899999999999888888 7999999999999999999999999999873
No 23
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=85.82 Aligned_cols=54 Identities=31% Similarity=0.565 Sum_probs=50.3
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN 55 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~ 55 (62)
|++|.+.|.++++ +++.++.++.+||++|||+.+|||++|+.+|+.|+......
T Consensus 23 l~~Y~~~F~~~~i-~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~~~~~~l 76 (80)
T 3bs5_B 23 LQQYIKNFEREKI-SGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNYGL 76 (80)
T ss_dssp GGGGHHHHHHHTC-CHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC-CHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcc
Confidence 5799999999999 79999999999999999999999999999999999876644
No 24
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=86.96 Aligned_cols=54 Identities=33% Similarity=0.604 Sum_probs=50.7
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN 55 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~ 55 (62)
|++|++.|.++++ +.+.++.++.+||++|||+.+|||++|+.+|+.|+.....+
T Consensus 27 l~~Y~~~F~~~~I-~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~~~~~~l 80 (83)
T 2ean_A 27 LQQYIKNFEREKI-SGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNSGP 80 (83)
T ss_dssp GTTTHHHHHHHTC-CHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCC-CHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 5799999999999 69999999999999999999999999999999999887654
No 25
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=99.64 E-value=3.7e-16 Score=84.34 Aligned_cols=52 Identities=25% Similarity=0.447 Sum_probs=49.1
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
|++|.+.|.++++ +.+.++.++.+||++|||+.+|||++|+.+|+.|+.+..
T Consensus 21 l~~y~~~F~~~~i-~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~~~e 72 (74)
T 2gle_A 21 LDQYVSEFSAQNI-SGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMSLE 72 (74)
T ss_dssp THHHHHHHTTTTC-CHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHHHHH
T ss_pred CHHHHHHHHHcCC-CHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 5799999999999 799999999999999999999999999999999998764
No 26
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=99.63 E-value=3.8e-16 Score=85.92 Aligned_cols=52 Identities=31% Similarity=0.523 Sum_probs=47.0
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
|++|.+.|.++++ +...++.+|++||++|||+.+|||+||+.+|+.++....
T Consensus 24 l~~Y~~~F~~~~i-dg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L~~~~~ 75 (81)
T 3bq7_A 24 LCEYKDIFTRHDI-RGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSRSSR 75 (81)
T ss_dssp CGGGHHHHHHTTC-CHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHcCC-CHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999 788899999999999999999999999999999987654
No 27
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=99.62 E-value=1.6e-16 Score=86.48 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=45.3
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
|++|.+.|.++++ +.+.++.+|++||++|||+.+|||+||+.+|+.++....
T Consensus 19 l~~Y~~~F~~~~i-dg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l~~~~~ 70 (76)
T 2f3n_A 19 LGEHRDRFEDHEI-EGAHLPALTKEDFVELGVTRVGHRENIERALRQLDGSRR 70 (76)
T ss_dssp CGGGHHHHHHTTC-CGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC-----
T ss_pred CHHHHHHHHHcCC-CHHHHccCCHHHHHHcCCCChhHHHHHHHHHHHHHHHHh
Confidence 6899999999999 688999999999999999999999999999999987665
No 28
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=99.59 E-value=6.5e-16 Score=93.24 Aligned_cols=49 Identities=33% Similarity=0.581 Sum_probs=46.6
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRT 50 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~ 50 (62)
|++|.++|.++||+ ++.+..+|.+||++|||+.+|||+||+.+|+.++.
T Consensus 22 L~~Y~~~F~~~g~d-~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~L~~ 70 (149)
T 3sei_A 22 LQLYAPNFISAGYD-LPTISRMTPEDLTAIGVTKPGHRKKIAAEISGLSI 70 (149)
T ss_dssp CGGGHHHHHHTTCC-HHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHcCCC-HHHHccCCHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 68999999999995 99999999999999999999999999999998864
No 29
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=99.59 E-value=2.3e-15 Score=81.92 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=49.2
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
+++|.+.|.++++ +.+.++.++.+||++|||+.+|||++|+.+|+.|+.+..
T Consensus 22 l~~y~~~F~~~~I-~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~Lr~~~~ 73 (78)
T 3bs7_A 22 YTQYEQLFAQHDI-TGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRLKTD 73 (78)
T ss_dssp GGGGHHHHHHTTC-CHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 4789999999999 789999999999999999999999999999999998764
No 30
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=99.55 E-value=9.6e-16 Score=92.18 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=47.6
Q ss_pred CcchHHHHhhcCcCcHHHHH--cCCHHHHhcCCCCCchHHHHHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAVV--RLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~--~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~ 51 (62)
|++|.+.|.++||++.+.+. .+|++||++|||+.+|||+||+.+|+.++..
T Consensus 26 L~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~L~~~ 78 (148)
T 2kiv_A 26 LPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKM 78 (148)
T ss_dssp CTTSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHHCSCC
T ss_pred CHHHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHHh
Confidence 68999999999998888888 9999999999999999999999999998743
No 31
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=99.54 E-value=4.7e-15 Score=89.14 Aligned_cols=47 Identities=34% Similarity=0.624 Sum_probs=44.5
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHH-hcCCCCCchHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQA 47 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL-~~lGIt~~gh~kkIl~~i~~ 47 (62)
|++|.++|.++||++++.+..++.+|| ++|||+.+|||+||+.++++
T Consensus 100 L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~~ 147 (148)
T 2kiv_A 100 LGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGD 147 (148)
T ss_dssp CCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHhh
Confidence 689999999999999999999999997 89999999999999999863
No 32
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.53 E-value=3.6e-15 Score=84.03 Aligned_cols=53 Identities=23% Similarity=0.385 Sum_probs=48.5
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhcc
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANL 56 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~ 56 (62)
|.+| .|.++++ +.+.++.|+.+||++|||+.+|||++|+.+|+.|+.++..+.
T Consensus 30 l~~Y--~F~~~~I-~G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~L~~~~~~l~ 82 (91)
T 1wwv_A 30 LQDY--PFEDWQL-PGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSSRLQ 82 (91)
T ss_dssp HHTS--CHHHHCC-CHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred cccc--cHHhcCc-cHHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHHHHHHhhccc
Confidence 3578 7999999 699999999999999999999999999999999999886544
No 33
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=99.52 E-value=1.5e-14 Score=83.20 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=48.6
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
+++|.+.|.++++ +.+.+..++.+||++|||+.+|||++|+.+|+.|+.+..
T Consensus 42 l~~Y~~~F~~~~I-~G~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~Lr~~~~ 93 (106)
T 3bs5_A 42 YTQYEQLFAQHDI-TGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRLKTD 93 (106)
T ss_dssp GGGGHHHHHHTTC-CHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCc-cHHHHhhCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999 689999999999999999999999999999999987653
No 34
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=99.48 E-value=6.7e-14 Score=78.58 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=45.5
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
|.+|.++|... +++.+..||++||+++||+..|||+||+.+|+.++....
T Consensus 30 LhKY~~~F~~~---~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~lr~~~~ 79 (88)
T 2d3d_A 30 LHKYSDALSGT---PWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKE 79 (88)
T ss_dssp CGGGHHHHTTS---CHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhcC---CHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHHHHHHHh
Confidence 68999999864 789999999999999999999999999999999997543
No 35
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=99.47 E-value=2.4e-14 Score=79.79 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=47.0
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
++||.+.|.+++++.++.+..+..++|++|||+++|||-||+.++..|+.+..
T Consensus 27 c~qY~~~F~eN~I~g~d~L~eLd~e~LkElGI~kvGdRirIlk~vk~Lr~~~~ 79 (85)
T 1ow5_A 27 CTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQRDKR 79 (85)
T ss_dssp CTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHTC----
T ss_pred ChhHHHHHHHcCCCcHHHHHHcCHHHHHHhCCCcccHHHHHHHHHHHHHHHHh
Confidence 47999999999997779999999999999999999999999999999987665
No 36
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.7e-14 Score=81.54 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=49.2
Q ss_pred Ccc--hHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy10378 1 MAR--YLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN 55 (62)
Q Consensus 1 L~~--Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~ 55 (62)
|++ |++.|.++++ +.+.++.++.+||++|||+..|||++|+.+|+.|+....++
T Consensus 44 l~~~~y~~~F~~~~I-~G~~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~Lr~~~~~~ 99 (103)
T 2e8o_A 44 FEEPVLLKNIRENEI-TGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQIHVDT 99 (103)
T ss_dssp CCCHHHHHHHHHTTC-CTTTTTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTCS
T ss_pred CChHHHHHHHHHcCC-CHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHH
Confidence 456 9999999999 79999999999999999999999999999999998765543
No 37
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.44 E-value=1.4e-13 Score=77.03 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=46.8
Q ss_pred cchHHHHhhcCcCcHHHHHcCCHHHHhc--CCCCCchHHHHHHHHHHHHHHHh
Q psy10378 2 ARYLDNFERGGISSMEAVVRLTVAELNA--LGITLVGHQKKIMNSIQAMRTQL 52 (62)
Q Consensus 2 ~~Y~~~f~~~g~~~~~~~~~lt~~dL~~--lGIt~~gh~kkIl~~i~~l~~~~ 52 (62)
++|++.|.++.+ +++.++.||++||++ |||+..|||++|+.+|+.|+...
T Consensus 37 ~~Y~~~F~~~~I-dG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~~ 88 (91)
T 1v85_A 37 SLYRDRFLSERV-NGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSGP 88 (91)
T ss_dssp HHHHHHHHHTTC-CHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCC-CHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 789999999988 899999999999998 99999999999999999998643
No 38
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=99.41 E-value=3.5e-13 Score=77.22 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=45.7
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
|.+|.++|... +++.+..||++||.++||+..|||+||+.+|+.++....
T Consensus 43 LhKY~~~F~~~---~~~~l~~LTdedL~~~GVta~GARrKiL~aI~~Lr~~k~ 92 (101)
T 2es6_A 43 LHKYSDALSGT---PWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKE 92 (101)
T ss_dssp CCCTHHHHTTS---CHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHccC---CHHHHHhcCHHHHHHcCCccHhHHHHHHHHHHHHHHHHH
Confidence 67999999774 678999999999999999999999999999999997644
No 39
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.36 E-value=9.7e-13 Score=77.29 Aligned_cols=50 Identities=14% Similarity=0.289 Sum_probs=45.1
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
|.+|++.|.. . +++.|+.++++||+++||+..|||+||+.+|+.+++...
T Consensus 61 L~KY~~~F~~--~-~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~Lr~~k~ 110 (119)
T 2b6g_A 61 LHKYSDALSG--T-PWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKE 110 (119)
T ss_dssp CHHHHHHHTT--S-CHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHcc--C-CHHHHHhcCHHHHHHCCCCccccHHHHHHHHHHHHhhhc
Confidence 6799999954 4 689999999999999999999999999999999997653
No 40
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=99.29 E-value=5.3e-12 Score=70.63 Aligned_cols=51 Identities=27% Similarity=0.498 Sum_probs=44.7
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHH-hcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL-~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
+++|.+.|.++.+ +++.++.++.+|| ++||| +.|||+||+++|+.++..+.
T Consensus 32 l~~y~~~F~~~~I-dG~~LL~Lt~~dL~k~lgI-klG~r~kI~~~I~~L~~~~~ 83 (89)
T 1kw4_A 32 CQDYVDDFIQQEI-DGQALLRLKEKHLVNAMGM-KLGPALKIVAKVESIKEVRD 83 (89)
T ss_dssp CGGGHHHHHHTTC-CHHHHHHCCHHHHHTTTCC-CHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHhCc-cHHHHhcCCHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999 7999999999999 89999 69999999999999987654
No 41
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=99.22 E-value=1.1e-11 Score=76.62 Aligned_cols=49 Identities=20% Similarity=0.433 Sum_probs=43.9
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
|.+|.++|... +++.+..||++||.++||| .|||+||+.+|+.++.+..
T Consensus 19 LhKY~~~F~~~---~~e~~~~LTdedL~~~GVT-~GARrKIL~aIq~Lrer~~ 67 (173)
T 1oxj_A 19 LHKYIELFKNM---TYEEMLLITEDFLQSVGVT-KGASHKLALCIDKLKERAN 67 (173)
T ss_dssp CGGGGGGGTTC---CHHHHTTCCHHHHHHTTCC-HHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHccC---CHHHHHhcCHHHHHHCCCc-hHHHHHHHHHHHHHHHHhh
Confidence 67999999875 4668999999999999999 5999999999999997664
No 42
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=99.22 E-value=1e-11 Score=70.56 Aligned_cols=50 Identities=12% Similarity=0.308 Sum_probs=45.7
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhc--CCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNA--LGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~--lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
+++|++.| ++ + +.+.++.++++||++ |||...|||+||+.+|+.|+.+-.
T Consensus 34 l~~Y~~~F-~~-I-dG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L~~~~~ 85 (97)
T 2d8c_A 34 MPEYCEPL-EH-F-TGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEHH 85 (97)
T ss_dssp CTTTTTTT-TT-C-CHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHSC
T ss_pred CHHHHHHH-Hc-C-CCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhH
Confidence 57899999 66 6 899999999999999 999999999999999999986654
No 43
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=99.15 E-value=4.3e-11 Score=77.99 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=46.9
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHh-cCCCCCchHHHHHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELN-ALGITLVGHQKKIMNSIQAMRTQ 51 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~-~lGIt~~gh~kkIl~~i~~l~~~ 51 (62)
|++|.+.|.++++ +...+..+|++||+ +|||+.++|||||+.+|+.++..
T Consensus 32 L~~Y~~~f~~n~~-dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~el~~~ 82 (265)
T 3tad_C 32 LGSYLSSGKHWII-SGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSE 82 (265)
T ss_dssp CCTTHHHHTTTCS-CSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC-chHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence 6799999999999 78999999999996 99999999999999999999864
No 44
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=99.11 E-value=1e-10 Score=76.20 Aligned_cols=49 Identities=27% Similarity=0.433 Sum_probs=46.5
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRT 50 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~ 50 (62)
|.||.+.|.++++ +...+..+|.+||.+|||+..+||++|+.+|+.|+.
T Consensus 104 L~QY~~~F~~~~i-Dg~~L~~LT~~DL~~LGIt~~~HR~kil~aI~~L~~ 152 (265)
T 3tad_C 104 LPQYKTQFDEGRV-DGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRI 152 (265)
T ss_dssp CGGGHHHHHHHTC-CHHHHHTCBHHHHHHTTCCBHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCC-CHHHhcccCHHHHHHcCCCcHHhHHHHHHHHHHHhh
Confidence 6899999999999 599999999999999999999999999999999874
No 45
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=98.76 E-value=1.4e-08 Score=56.66 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=42.9
Q ss_pred cchHHHHhhcCcCcHHHHHcCCHHHH-hcCCCCCchHHHHHHHHHHHHHHH
Q psy10378 2 ARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQAMRTQ 51 (62)
Q Consensus 2 ~~Y~~~f~~~g~~~~~~~~~lt~~dL-~~lGIt~~gh~kkIl~~i~~l~~~ 51 (62)
++|.+.|.++.+ +++.++.|+.+|| +.|||. .|++.||..+|..++..
T Consensus 34 ~~y~~~F~~~eI-DG~aLL~Lt~~dl~~~mgik-lGpalKi~~~I~~lk~~ 82 (89)
T 1pk1_B 34 AVHGDLFRKHEI-DGKALLRLNSERMMKYMGLK-LGPALKICNLVNKVNGR 82 (89)
T ss_dssp GGGHHHHHHTTC-CHHHHHTCCHHHHHHHSCCC-HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcCc-ChHHHhcCCHHHHHHccCCC-ccHHHHHHHHHHHHHcc
Confidence 589999999999 7999999999998 569996 99999999999999754
No 46
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=98.71 E-value=2.4e-08 Score=66.74 Aligned_cols=51 Identities=24% Similarity=0.239 Sum_probs=46.4
Q ss_pred Ccc-hHHHHhhcCcCcHHHHHcCCHHHHh-cCCCCCchHHHHHHHHHHHHHHHh
Q psy10378 1 MAR-YLDNFERGGISSMEAVVRLTVAELN-ALGITLVGHQKKIMNSIQAMRTQL 52 (62)
Q Consensus 1 L~~-Y~~~f~~~g~~~~~~~~~lt~~dL~-~lGIt~~gh~kkIl~~i~~l~~~~ 52 (62)
|++ |...|.++.. +...++.+|++||. +|||+.|.|||||+.+|+.+.+-.
T Consensus 54 mp~~Yv~~~r~nvk-SG~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel~~~~ 106 (334)
T 3tac_B 54 MPAWYVAACRANVK-SGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLT 106 (334)
T ss_dssp CCHHHHHHHHHHCC-SHHHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcc-chHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Confidence 455 9999999999 79999999999996 999999999999999999997543
No 47
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=98.61 E-value=8.8e-08 Score=64.07 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=45.9
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHH-hcCCCCCchHHHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQAMR 49 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL-~~lGIt~~gh~kkIl~~i~~l~ 49 (62)
|.||.+.|..+++ +...+-.++.+|| ..|||+...|+++|+.+|+-|+
T Consensus 175 LpQY~~~F~~~~V-DgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~~Lr 223 (334)
T 3tac_B 175 LPQYRSYFMECLV-DARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLK 223 (334)
T ss_dssp CGGGHHHHHHTTC-CHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHhcCc-chhhhhhccHHHHHhccCCCcHHHHHHHHHHHHHhh
Confidence 6899999999999 7999999999999 7999999999999999999986
No 48
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=98.19 E-value=1.1e-06 Score=48.81 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=43.0
Q ss_pred hHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378 4 YLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49 (62)
Q Consensus 4 Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~ 49 (62)
.++.|..|++ +.+.+..++.+||++|+|...|+|.++..+|+.||
T Consensus 33 ~~~~f~~ndI-tG~vL~eL~leDlKEL~i~s~~~r~~lk~~In~Lr 77 (85)
T 1uqv_A 33 LCQRLRENDI-VGDLLPELCLQDCQDLCDGDLNKAIKFKILINKMR 77 (85)
T ss_dssp HHHHHHHSCC-CGGGHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-chhhHHHcCHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 4789999999 89999999999999999999999999999999996
No 49
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=98.07 E-value=7.7e-06 Score=44.86 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=44.6
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRT 50 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~ 50 (62)
++.|.+.|.+.|+.++-++-.++-+||..|.|. -.||.||-+++.+.+.
T Consensus 18 c~~~Id~F~~qgl~~i~qL~~~~ledL~~mkIp-e~~R~kIWk~l~e~~q 66 (80)
T 1dxs_A 18 CPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIP-EQYRMTIWRGLQDLKQ 66 (80)
T ss_dssp CTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCC-TTTHHHHHHHHHHC--
T ss_pred chHHHHHHHHcCcccchhhccCCHHHHHhCCCC-HHHHHHHHhhHHHhcc
Confidence 367999999999999999999999999999998 8999999999999873
No 50
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=97.89 E-value=4.9e-06 Score=50.37 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=39.1
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHH--H--hcCCCCCchHHHHHH-HHHH
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAE--L--NALGITLVGHQKKIM-NSIQ 46 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~d--L--~~lGIt~~gh~kkIl-~~i~ 46 (62)
|+||.+.|..+.+ +...+..|+..+ + .+|||+.++||+||- +|+.
T Consensus 96 LpqY~~~Fr~~~I-~G~~LprLa~~~~~~L~~~LgI~~~~hRqKl~lkald 145 (150)
T 2k60_A 96 LPQYEETFRKLQL-SGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALD 145 (150)
T ss_dssp CTTHHHHHHHHCC-STTHHHHHSSCHHHHCSSCSCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCC-CHHHHHhhccccHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 6899999999999 799999998875 4 899999999999986 4544
No 51
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=97.88 E-value=2.5e-06 Score=51.63 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=37.4
Q ss_pred CcchHHHHhhcCcCcHHHHHcCCHHH----HhcCCCCCchHHHHHH
Q psy10378 1 MARYLDNFERGGISSMEAVVRLTVAE----LNALGITLVGHQKKIM 42 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt~~d----L~~lGIt~~gh~kkIl 42 (62)
|+||.+.|.++.+ +...+..|+..+ +.+|||+.++||+||.
T Consensus 96 LpqY~~~Fr~~~I-dG~~LprL~~~~~~~L~~~LGI~~~~hR~Kl~ 140 (150)
T 2l5y_A 96 LPQYEKNFRDNNV-KGTTLPRIAVHEPSFMISQLKISDRSHRQKLQ 140 (150)
T ss_dssp CTTSHHHHHHHHC-SSSTTTTCCSSSCCSTTTTSSCCCHHHHHHHH
T ss_pred cHHHHHHHHHcCC-CHHHhhhhhhcchHHHHHHhCCCCHHHHHHHH
Confidence 6899999999999 799999999866 4699999999999998
No 52
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=0.00011 Score=40.65 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=40.2
Q ss_pred Ccc-hHHHHhhcCcCcHHHHHcCCHHHHh-cCCCCCchHHHHHHHHHHHHH
Q psy10378 1 MAR-YLDNFERGGISSMEAVVRLTVAELN-ALGITLVGHQKKIMNSIQAMR 49 (62)
Q Consensus 1 L~~-Y~~~f~~~g~~~~~~~~~lt~~dL~-~lGIt~~gh~kkIl~~i~~l~ 49 (62)
|++ |.+.|.++.+ +...++.|++++|. ++|++ .=+.+||+..|..+|
T Consensus 32 L~e~vv~~F~~e~I-DG~lL~~L~ee~L~edf~ls-~Lq~kKi~~fI~GWr 80 (84)
T 2dkz_A 32 LSEDVISFFVTEKI-DGNLLVQLTEEILSEDFKLS-KLQVKKIMQFINGSG 80 (84)
T ss_dssp CCHHHHHHHHTTTC-CHHHHHHCCHHHHHHTSCCC-HHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHHHHcc-chHHHHhCCHHHHHhhcCCC-HHHHHHHHHHHhcCC
Confidence 454 5799999999 79999999999995 69996 889999999886543
No 53
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00016 Score=38.92 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=41.3
Q ss_pred cchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378 2 ARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49 (62)
Q Consensus 2 ~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~ 49 (62)
++|..+|.++-+ +-+.+.+++.+=|.+|||+ .|+.=+|++.+....
T Consensus 20 ~rYA~~F~~~ri-~e~mL~Dl~~~~Lr~LGi~-eGDIIrVmk~l~~k~ 65 (72)
T 3idw_A 20 QRYTINFDREQL-TEDMMPDINNSMLRTLGLR-EGDIVRVMKHLDKKF 65 (72)
T ss_dssp HHHHHHHHHTTC-CGGGGGGCCHHHHHHTTCC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccC-CHHHHhhCCHHHHHHcCCc-hhhHHHHHHHHHHHh
Confidence 479999999999 6889999999999999998 899999999877653
No 54
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=91.18 E-value=0.89 Score=23.59 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=30.0
Q ss_pred HHHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHH
Q psy10378 5 LDNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSI 45 (62)
Q Consensus 5 ~~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i 45 (62)
...+.++||.|++.+...+.++|.+ .||+ ..--.+|+.+.
T Consensus 20 ~~kL~e~Gi~TvedlA~~~~~eL~~i~gis-e~kA~~ii~aA 60 (70)
T 1wcn_A 20 AFKLAARGVCTLEDLAEQGIDDLADIEGLT-DEKAGALIMAA 60 (70)
T ss_dssp HHHHHTTTCCSHHHHHTSCHHHHHTSSSCC-HHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHcCCHHHHHHccCCC-HHHHHHHHHHH
Confidence 3568899999999999999999987 4665 44444555443
No 55
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=89.89 E-value=0.34 Score=27.59 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=37.1
Q ss_pred hHHHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHHHH
Q psy10378 4 YLDNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQAM 48 (62)
Q Consensus 4 Y~~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~~l 48 (62)
....+.++||.|++.+...+..+|.+ -||+ ..--.||+.+...+
T Consensus 37 ~i~kL~eAG~~Tve~va~a~~~eL~~i~GIs-e~ka~kIi~aA~kl 81 (114)
T 1b22_A 37 DVKKLEEAGFHTVEAVAYAPKKELINIKGIS-EAKADKILAEAAKL 81 (114)
T ss_dssp HHHHHHTTCCSSGGGBTSSBHHHHHTTTTCS-TTHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCcHHHHHhCCHHHHHHccCCC-HHHHHHHHHHHHHH
Confidence 46788999999999999999999986 6777 77788888877665
No 56
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=89.00 E-value=0.076 Score=34.39 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred CcchHHHHhhcCcCcHHHHHcCC
Q psy10378 1 MARYLDNFERGGISSMEAVVRLT 23 (62)
Q Consensus 1 L~~Y~~~f~~~g~~~~~~~~~lt 23 (62)
+++|.++|.++|+++++.+++||
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~ 373 (373)
T 2qol_A 351 TAHCKEIFTGVEYSSCDTIAKIS 373 (373)
T ss_dssp -----------------------
T ss_pred chHHHHHHHhcCCCcHHHHhccC
Confidence 47899999999999999999875
No 57
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=87.72 E-value=1.9 Score=22.44 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=33.6
Q ss_pred HHHHhhcCcCcHHHHHcCCHHHHhcC-CCCCchHHHHHHHHHHHH
Q psy10378 5 LDNFERGGISSMEAVVRLTVAELNAL-GITLVGHQKKIMNSIQAM 48 (62)
Q Consensus 5 ~~~f~~~g~~~~~~~~~lt~~dL~~l-GIt~~gh~kkIl~~i~~l 48 (62)
...+.++||+|++.+...+.++|..+ |++ ..--.+|....+.+
T Consensus 19 a~~L~~~Gf~tve~vA~~~~~eL~~I~G~d-E~~a~~l~~~A~~~ 62 (70)
T 1u9l_A 19 ATVLVEEGFSTLEELAYVPMKELLEIEGLD-EPTVEALRERAKNA 62 (70)
T ss_dssp HHHHHHTTCCCHHHHHHSCHHHHTTSTTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCcCcHHHHHcCCHHHHhhccCCC-HHHHHHHHHHHHHH
Confidence 46788999999999999999999996 665 56666666554443
No 58
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=87.40 E-value=0.71 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=21.4
Q ss_pred HHHhhcCcCcHHHHHcCCHHHHhc
Q psy10378 6 DNFERGGISSMEAVVRLTVAELNA 29 (62)
Q Consensus 6 ~~f~~~g~~~~~~~~~lt~~dL~~ 29 (62)
..+.++|+.++.+++..+.+||..
T Consensus 22 NcLkragI~Tv~dL~~~s~~dLlk 45 (73)
T 1z3e_B 22 NCLKRAGINTVQELANKTEEDMMK 45 (73)
T ss_dssp HHHHHTTCCBHHHHHTSCHHHHHT
T ss_pred HHHHHcCCCcHHHHHcCCHHHHHH
Confidence 456889999999999999999965
No 59
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=85.62 E-value=1.1 Score=25.06 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.1
Q ss_pred HHHHhhcCcCcHHHHHcCCHHHHhc
Q psy10378 5 LDNFERGGISSMEAVVRLTVAELNA 29 (62)
Q Consensus 5 ~~~f~~~g~~~~~~~~~lt~~dL~~ 29 (62)
...+.++|+.++.+++..|.+||..
T Consensus 36 ~NcLkragI~Tv~dL~~~se~dLlk 60 (98)
T 1coo_A 36 ANCLKAEAIHYIGDLVQRTEVELLK 60 (98)
T ss_dssp HHHHHTTTCCBHHHHHTSCHHHHTT
T ss_pred HHHHHHcCCCcHHHHHhCCHHHHHh
Confidence 4677899999999999999999954
No 60
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=84.71 E-value=1.1 Score=24.12 Aligned_cols=44 Identities=16% Similarity=0.407 Sum_probs=31.9
Q ss_pred HHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy10378 5 LDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN 55 (62)
Q Consensus 5 ~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~ 55 (62)
...+.++|+.++.+++..|.+||..+ ...| + +++.+++..+.++
T Consensus 28 ~NcLk~agI~Tv~dL~~~se~dLlki--~n~G--~---kSl~EI~~~L~e~ 71 (79)
T 3gfk_B 28 YNCLKRAGINTVQELANKTEEDMMKV--RNLG--R---KSLEEVKAKLEEL 71 (79)
T ss_dssp HHHHHHTTCCBHHHHTTCCHHHHTTS--TTCH--H---HHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHhCCHHHHHHc--CCCC--H---hHHHHHHHHHHHc
Confidence 45778999999999999999999764 3334 2 3556666666543
No 61
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=82.68 E-value=3.1 Score=22.29 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=27.5
Q ss_pred chHHHHhhcCcCcHHHHHcCCHHHHhcC-CCC
Q psy10378 3 RYLDNFERGGISSMEAVVRLTVAELNAL-GIT 33 (62)
Q Consensus 3 ~Y~~~f~~~g~~~~~~~~~lt~~dL~~l-GIt 33 (62)
..++.|..+++.|..++...+..+|.++ |++
T Consensus 15 ~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls 46 (83)
T 2kz3_A 15 EMIQLLRSHRIKTVVDLVSADLEEVAQKCGLS 46 (83)
T ss_dssp HHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCC
T ss_pred HHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCC
Confidence 3578899999999999999999999976 776
No 62
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=81.91 E-value=1.6 Score=23.76 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=31.8
Q ss_pred HHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy10378 5 LDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN 55 (62)
Q Consensus 5 ~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~ 55 (62)
...+.++|+.++.+++..|.+||..+ ...| + +++.+++..+...
T Consensus 24 ~NcLkragI~Tv~dL~~~se~dLlki--~n~G--~---KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 24 ANCLXAEAIHYIGDLVQRTEVELLXT--PNLG--X---XSLTEIXDVLASR 67 (86)
T ss_dssp HHHHHHTTCCBHHHHHHSCHHHHHTS--TTCC--H---HHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcHHHHHhCCHHHHhhc--cccC--c---ccHHHHHHHHHHc
Confidence 45688999999999999999999764 3333 2 3566666666543
No 63
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=80.25 E-value=4.6 Score=27.00 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=35.5
Q ss_pred hHHHHhhcCcCcHHHHHcCCHHHHhcC-CCCCchHHHHHHHHHHHH
Q psy10378 4 YLDNFERGGISSMEAVVRLTVAELNAL-GITLVGHQKKIMNSIQAM 48 (62)
Q Consensus 4 Y~~~f~~~g~~~~~~~~~lt~~dL~~l-GIt~~gh~kkIl~~i~~l 48 (62)
-...+.++||.+++.+...+..+|.++ ||+ ...-.+|+.++..+
T Consensus 95 ~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis-~~~~~~i~~~a~~~ 139 (400)
T 3lda_A 95 DVKKLRESGLHTAEAVAYAPRKDLLEIKGIS-EAKADKLLNEAARL 139 (400)
T ss_dssp HHHHHHHTTCCBHHHHHHSCHHHHHTSTTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHhCCHHHHHHHhCCC-HHHHHHHHHHHHHh
Confidence 356789999999999999999999865 776 56677787776653
No 64
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=78.04 E-value=3.4 Score=25.36 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=31.5
Q ss_pred hHHHHhhcCcCcHHHHHcCCHHHHhcCCCCC--chHHHHHHHHHHHHH
Q psy10378 4 YLDNFERGGISSMEAVVRLTVAELNALGITL--VGHQKKIMNSIQAMR 49 (62)
Q Consensus 4 Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~--~gh~kkIl~~i~~l~ 49 (62)
|...| .|| +.+.++.++++|+.++--.. .-|+.||-..|..-+
T Consensus 56 fr~AF--~~F-d~~~VA~~~e~~ve~Ll~d~~IIRnr~KI~A~i~NA~ 100 (183)
T 2ofk_A 56 YRACF--HQF-DPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNAR 100 (183)
T ss_dssp HHHHT--GGG-CHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHH
T ss_pred HHHHH--cCC-CHHHHcCCCHHHHHHHhcCCcchhhHHHHHHHHHHHH
Confidence 44444 457 79999999999998764331 469999998777655
No 65
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.00 E-value=5.4 Score=25.10 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=33.1
Q ss_pred chHHHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHH
Q psy10378 3 RYLDNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQ 46 (62)
Q Consensus 3 ~Y~~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~ 46 (62)
.+...+.++||.+++.++..+..+|.+ .|++ ..-..+++.+..
T Consensus 14 ~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis-~~~a~~~i~~a~ 57 (322)
T 2i1q_A 14 STAEKLVEAGYIDFMKIATATVGELTDIEGIS-EKAAAKMIMGAR 57 (322)
T ss_dssp HHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcC-HHHHHHHHHHHH
Confidence 467889999999999999999999986 4665 445555555443
No 66
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=76.70 E-value=3.5 Score=25.40 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=31.3
Q ss_pred hHHHHhhcCcCcHHHHHcCCHHHHhcCCCCC--chHHHHHHHHHHHHH
Q psy10378 4 YLDNFERGGISSMEAVVRLTVAELNALGITL--VGHQKKIMNSIQAMR 49 (62)
Q Consensus 4 Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~--~gh~kkIl~~i~~l~ 49 (62)
|...| .|| +.+.++.++++|+.+|--.. .-||.||-..|..-+
T Consensus 56 fR~AF--~~F-D~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~ 100 (186)
T 2jg6_A 56 YEEAF--YDF-EPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQ 100 (186)
T ss_dssp HHHHT--GGG-CHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHH
T ss_pred HHHHH--cCC-CHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHH
Confidence 44444 457 68999999999998764331 469999998776554
No 67
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=75.87 E-value=5.2 Score=25.97 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=33.8
Q ss_pred chHHHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHH
Q psy10378 3 RYLDNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQ 46 (62)
Q Consensus 3 ~Y~~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~ 46 (62)
.....+.++||.|++.++..+..+|.. .|++ ..-..||+.++.
T Consensus 46 ~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s-~~~~~~~l~~~~ 89 (349)
T 1pzn_A 46 ATAEKLREAGYDTLEAIAVASPIELKEVAGIS-EGTALKIIQAAR 89 (349)
T ss_dssp HHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCC-HHHHHHHHHHHh
Confidence 457789999999999999999999985 6775 455666665543
No 68
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.77 E-value=7.9 Score=21.29 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=24.1
Q ss_pred HHHHh-hcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHH
Q psy10378 5 LDNFE-RGGISSMEAVVRLTVAELNALGITLVGHQKKIMN 43 (62)
Q Consensus 5 ~~~f~-~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~ 43 (62)
++.|. .+.+ +...++.||+.||+. .|--+-.|+.
T Consensus 39 cd~lv~Kh~I-DG~~lL~LtE~Dlrk----~Pkl~~p~~~ 73 (90)
T 2eap_A 39 CEKAVKKYHI-DGARFLNLTENDIQK----FPKLRVPILS 73 (90)
T ss_dssp HHHHHHHTTC-CHHHHHTCCHHHHTT----SCTTTHHHHH
T ss_pred HHHHHHHhcc-CchhhhcccHHHhcc----CCccccHHHH
Confidence 56665 6667 799999999999998 3444444444
No 69
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=61.88 E-value=19 Score=22.10 Aligned_cols=43 Identities=16% Similarity=0.355 Sum_probs=34.4
Q ss_pred HHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378 6 DNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49 (62)
Q Consensus 6 ~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~ 49 (62)
+.+...++.-..++.+.+..=|.++||+ ..-.++|+.-...|-
T Consensus 154 ~~l~~~~~v~~k~~~~~~~~~l~~~gi~-~~~~~~i~~~~~~l~ 196 (199)
T 1y88_A 154 DELVRAGLVFCRDVVSAGEEKLREIGLS-AKKAREVIAEAKKVI 196 (199)
T ss_dssp HHHHHTTCCBHHHHHHHCHHHHHHTTCC-HHHHHHHHHHHHHHH
T ss_pred hhhhcCCcEEEehhhhcChHHHHHcCCc-HHHHHHHHHHHHHHh
Confidence 4466788878889999889999999998 666678887776664
No 70
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=61.42 E-value=15 Score=23.49 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=29.8
Q ss_pred HHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHHH
Q psy10378 6 DNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQA 47 (62)
Q Consensus 6 ~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~~ 47 (62)
..+.++|+.+++++..++.+++.+ +|.+ ...-++|.+.+..
T Consensus 171 ~~l~~~~i~s~~~l~~~~~~e~~~ll~~~-~~~~~~v~~~~~~ 212 (328)
T 3im1_A 171 EKCKEINVETVYDIMALEDEERDEILTLT-DSQLAQVAAFVNN 212 (328)
T ss_dssp HHHHHTTCCSHHHHHHSCHHHHHHHCCCC-HHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHhcCCHHHHHhHhCCC-HHHHHHHHHHHHh
Confidence 456788999999999999999998 5554 3445555555443
No 71
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=49.99 E-value=18 Score=17.86 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=17.3
Q ss_pred cCcHHHHHcCCHHHHhcCCCC
Q psy10378 13 ISSMEAVVRLTVAELNALGIT 33 (62)
Q Consensus 13 ~~~~~~~~~lt~~dL~~lGIt 33 (62)
|.|++.+...|.+||.++ |.
T Consensus 24 Fgs~~~i~~As~eeL~~v-ig 43 (63)
T 2a1j_A 24 VKNIAELAALSQDELTSI-LG 43 (63)
T ss_dssp CSSHHHHHTCCHHHHHHH-HS
T ss_pred cCCHHHHHHCCHHHHHHH-cC
Confidence 558999999999999998 54
No 72
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=48.51 E-value=3.7 Score=26.14 Aligned_cols=44 Identities=20% Similarity=0.393 Sum_probs=0.0
Q ss_pred chHHHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHHH
Q psy10378 3 RYLDNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQA 47 (62)
Q Consensus 3 ~Y~~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~~ 47 (62)
.....+.++||.|++.+...+..+|.+ .|++ .....++++++..
T Consensus 23 ~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s-~~~~~~~~~~~~~ 67 (324)
T 2z43_A 23 TVINKLIEAGYSSLETLAVASPQDLSVAAGIP-LSTAQKIIKEARD 67 (324)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCC-HHHHHHHHHHHHh
Confidence 456788999999999999999999875 5776 5566677765543
No 73
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=46.31 E-value=38 Score=22.92 Aligned_cols=38 Identities=18% Similarity=0.459 Sum_probs=29.2
Q ss_pred cCcHHHHHcCCHHHHhcC-CCCCchHHHHHHHHHHHHHHH
Q psy10378 13 ISSMEAVVRLTVAELNAL-GITLVGHQKKIMNSIQAMRTQ 51 (62)
Q Consensus 13 ~~~~~~~~~lt~~dL~~l-GIt~~gh~kkIl~~i~~l~~~ 51 (62)
|.+++.++..+.+||.++ ||. .---++|-+++..++.+
T Consensus 335 FGsLq~Il~AS~eEL~~VeGIG-e~rAr~IregL~r~~~~ 373 (377)
T 3c1y_A 335 FKTLDQISKASVEDLKKVEGIG-EKRARAISESISSLKHR 373 (377)
T ss_dssp HCSHHHHTTCCHHHHTTSTTCC-HHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHhCCHHHHHhccCcc-HHHHHHHHHHHHHHhcc
Confidence 567999999999999977 555 55566777777777654
No 74
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=45.15 E-value=29 Score=24.23 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=30.3
Q ss_pred HHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHH
Q psy10378 5 LDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48 (62)
Q Consensus 5 ~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l 48 (62)
...+.++|+.|+.+++.++.++|..+ ++--++|.+.+...
T Consensus 659 ar~L~~~G~~s~~dl~~~~~~~l~~~----~~~~~~i~~~~~~~ 698 (720)
T 2zj8_A 659 ARALYNSGFRSIEDISQARPEELLKI----EGIGVKTVEAIFKF 698 (720)
T ss_dssp HHHHHTTTCCSHHHHHTCCHHHHHTS----TTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHhCCHHHHHHh----HhHHHHHHHHHHHh
Confidence 34567899999999999999999998 34445566665433
No 75
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=43.36 E-value=23 Score=25.16 Aligned_cols=45 Identities=13% Similarity=0.305 Sum_probs=32.8
Q ss_pred hHHHHhhcCc-CcHHHHHcCCHHHHhcC-CCCCchHHHHHHHHHHHHH
Q psy10378 4 YLDNFERGGI-SSMEAVVRLTVAELNAL-GITLVGHQKKIMNSIQAMR 49 (62)
Q Consensus 4 Y~~~f~~~g~-~~~~~~~~lt~~dL~~l-GIt~~gh~kkIl~~i~~l~ 49 (62)
-.+.|.++|+ .+..++..|+.+||..+ |+. .---.+|+++|+.-|
T Consensus 458 ~i~~L~~~g~i~~~~Dly~L~~~~L~~l~g~g-eKsa~nL~~aIe~sk 504 (586)
T 4glx_A 458 IIDQLVEKEYVHTPADLFKLTAGKLTGLERMG-PKSAQNVVNALEKAK 504 (586)
T ss_dssp HHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCHHHHhCCCHHHHhcccCcc-HHHHHHHHHHHHHHc
Confidence 3566778885 78889999999999987 554 444567777776543
No 76
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=41.83 E-value=9.7 Score=22.55 Aligned_cols=23 Identities=13% Similarity=0.413 Sum_probs=19.2
Q ss_pred HHhhcCcCcHHHHHcCCHHHHhcC
Q psy10378 7 NFERGGISSMEAVVRLTVAELNAL 30 (62)
Q Consensus 7 ~f~~~g~~~~~~~~~lt~~dL~~l 30 (62)
.|.-.|+ ++|++.+|+.++|..|
T Consensus 14 kFtyrG~-~ld~Ll~ms~e~l~~L 36 (142)
T 3u5c_P 14 THSYRGV-DLEKLLEMSTEDFVKL 36 (142)
T ss_dssp CCBSSSC-BHHHHHTTCHHHHHHH
T ss_pred eEEEccc-cHHHHHcCCHHHHHHH
Confidence 3555688 8999999999999875
No 77
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=40.18 E-value=27 Score=20.76 Aligned_cols=38 Identities=11% Similarity=0.289 Sum_probs=29.7
Q ss_pred CcCcHHHHHcCCHHHHhc----CCCCCchHHHHHHHHHHHHHH
Q psy10378 12 GISSMEAVVRLTVAELNA----LGITLVGHQKKIMNSIQAMRT 50 (62)
Q Consensus 12 g~~~~~~~~~lt~~dL~~----lGIt~~gh~kkIl~~i~~l~~ 50 (62)
...+++.+..++++++++ .|.. ...-+|+..|++.||.
T Consensus 105 ~~~TLe~LLemsd~evr~~L~~~ga~-eEEcrRL~~Al~nLRk 146 (149)
T 2lpe_A 105 QELTLDALLEMDEAKAKEMLRRWGAS-TEECSRLQQALTCLRK 146 (149)
T ss_dssp TTCSHHHHTTSCHHHHHHHHHTTTCC-THHHHHHHHHHTTGGG
T ss_pred hhccHHHHHhcCHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHH
Confidence 355899999999999876 5654 6678888888877764
No 78
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=38.44 E-value=28 Score=18.38 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=22.7
Q ss_pred cCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHH
Q psy10378 13 ISSMEAVVRLTVAELNALGITLVGHQKKIMNSI 45 (62)
Q Consensus 13 ~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i 45 (62)
|.+++.++..+.++|..+ |...---++|...+
T Consensus 38 FgSl~~i~~AS~eEL~~v-ig~~~~A~~I~~~l 69 (84)
T 1z00_B 38 VKNIAELAALSQDELTSI-LGNAANAKQLYDFI 69 (84)
T ss_dssp SSCHHHHHHSCHHHHHHH-HSCHHHHHHHHHHH
T ss_pred cCCHHHHHHCCHHHHHHH-hCchHHHHHHHHHH
Confidence 568999999999999998 54222145665554
No 79
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=37.36 E-value=40 Score=19.23 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=28.8
Q ss_pred HHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccC
Q psy10378 19 VVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLS 57 (62)
Q Consensus 19 ~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~ 57 (62)
+..++.++|.++... +.|++-|-.+++.|+.++..++.
T Consensus 144 ~~W~~~~el~~~~l~-~~~~~il~~a~~~l~~~~~~~~~ 181 (187)
T 3i9x_A 144 IGLFPMTEALELPLA-FDHLDMLKKAFSAITEEFLLTEG 181 (187)
T ss_dssp EEEEEHHHHTTSCBS-TTHHHHHHHHHHHHHHHHHTC--
T ss_pred EEEEeHHHcccCCCC-ccHHHHHHHHHHHHHhhhhcccc
Confidence 446777888887776 68998888899999988876543
No 80
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=37.17 E-value=50 Score=17.72 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=26.7
Q ss_pred hcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHHHHHHHh
Q psy10378 10 RGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQAMRTQL 52 (62)
Q Consensus 10 ~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~~l~~~~ 52 (62)
.... ++..+|.||.+|+.. +|. .|.. +...++.|+.+-
T Consensus 40 ~f~m-dGk~Lc~Lt~edF~~~~p~--~Gdi--L~~hL~~Lk~~~ 78 (93)
T 2qar_B 40 TFEM-NGKALLLLTKEDFRYRSPH--SGDV--LYELLQHILKQR 78 (93)
T ss_dssp GGCS-CHHHHTTCCHHHHHHHCTT--THHH--HHHHHHHHHHHH
T ss_pred cCCC-CHHHHHcCCHHHHhhhCCc--chHH--HHHHHHHHHHhc
Confidence 3345 799999999999986 554 3553 556777776544
No 81
>1g4y_B Calcium-activated potassium channel RSK2; small-conductance calcium-activated potassium channel, channel gating, signalin; 1.60A {Rattus norvegicus} SCOP: f.15.1.1 PDB: 1kkd_A 1qx7_D
Probab=33.81 E-value=33 Score=19.16 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHHH
Q psy10378 35 VGHQKKIMNSIQAMR 49 (62)
Q Consensus 35 ~gh~kkIl~~i~~l~ 49 (62)
.-||++.|.+|-.+|
T Consensus 57 R~HQRkfL~AI~~fR 71 (101)
T 1g4y_B 57 RKHQRKFLQAIHQLR 71 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 458999999999886
No 82
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=33.30 E-value=54 Score=17.00 Aligned_cols=33 Identities=6% Similarity=0.131 Sum_probs=23.1
Q ss_pred hhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHH
Q psy10378 9 ERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQ 46 (62)
Q Consensus 9 ~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~ 46 (62)
..... ++..+|.||.+|+.. .+ ..|.. +...++
T Consensus 40 ~~f~m-~G~~Lc~ls~edF~~~~p--~~Gdi--L~~hL~ 73 (82)
T 1sv0_C 40 QKFPM-NGKALCLMSLDMYLCRVP--VGGKM--LYRDFR 73 (82)
T ss_dssp HTCCS-CHHHHHHCCHHHHHHHCT--TTHHH--HHHHHH
T ss_pred ccCCC-CHHHHHhCCHHHHHhhCC--CchHH--HHHHHH
Confidence 33444 799999999999997 55 35654 445555
No 83
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.80 E-value=8.3 Score=22.57 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=19.3
Q ss_pred HHhhcCcCcHHHHHcCCHHHHhcC
Q psy10378 7 NFERGGISSMEAVVRLTVAELNAL 30 (62)
Q Consensus 7 ~f~~~g~~~~~~~~~lt~~dL~~l 30 (62)
.|.-.|+ ++|++.+|+.++|.+|
T Consensus 5 kftyrG~-~ld~L~~ms~~~l~~L 27 (132)
T 3j20_T 5 EFRYRGY-TLEQLMNMSLEELARL 27 (132)
T ss_dssp -CCSSSS-CHHHHHHHHHHHHHHH
T ss_pred EEEEcCC-cHHHHHcCCHHHHHHH
Confidence 4666788 7999999999999886
No 84
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=30.37 E-value=11 Score=24.28 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred hHHHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHH
Q psy10378 4 YLDNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQ 46 (62)
Q Consensus 4 Y~~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~ 46 (62)
....+.++||.|++.+...+..+|.+ .|++ ..-..+|++.+.
T Consensus 39 ~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is-~~~~~~~~~~a~ 81 (343)
T 1v5w_A 39 DIKKLKSVGICTIKGIQMTTRRALCNVKGLS-EAKVDKIKEAAN 81 (343)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHcCCCcHHHHHhCCHHHHHHhhCCC-HHHHHHHHHHHH
Confidence 45678899999999999999999875 5776 455666666544
No 85
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.02 E-value=61 Score=17.53 Aligned_cols=35 Identities=3% Similarity=0.112 Sum_probs=23.7
Q ss_pred cHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHH
Q psy10378 15 SMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51 (62)
Q Consensus 15 ~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~ 51 (62)
+...+|.|+.+|..++--...|.. +...++.|+..
T Consensus 57 ~G~~LC~ls~edF~~~~~~~~Gdi--L~~hL~~Lk~~ 91 (98)
T 1x66_A 57 DGKELCKMNKEDFLRATTLYNTEV--LLSHLSYLRES 91 (98)
T ss_dssp CHHHHHHCCHHHHHTTSCHHHHHH--HHHHHHHHHTC
T ss_pred CHHHHHcCCHHHHHHHcCCCchHH--HHHHHHHHHhc
Confidence 788999999999987632223432 44667777654
No 86
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=28.77 E-value=12 Score=22.46 Aligned_cols=24 Identities=17% Similarity=0.511 Sum_probs=0.0
Q ss_pred HHHhhcCcCcHHHHHcCCHHHHhcC
Q psy10378 6 DNFERGGISSMEAVVRLTVAELNAL 30 (62)
Q Consensus 6 ~~f~~~g~~~~~~~~~lt~~dL~~l 30 (62)
..|.-.|+ ++|++.+|+.++|..|
T Consensus 22 ~kFtYrG~-~ld~Ll~ms~eel~~L 45 (154)
T 3iz6_R 22 RKYSYRGV-DLDALLDMSTDDLVQL 45 (154)
T ss_dssp -------------------------
T ss_pred eeEEEecC-cHHHHHhCCHHHHHHH
Confidence 34666788 7999999999998775
No 87
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=28.43 E-value=1.1e+02 Score=18.85 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=19.4
Q ss_pred cCcHHHHHcCCHHHHhcCCCC
Q psy10378 13 ISSMEAVVRLTVAELNALGIT 33 (62)
Q Consensus 13 ~~~~~~~~~lt~~dL~~lGIt 33 (62)
|-+.+.++..+.++|..+|..
T Consensus 95 fPtpe~la~~~~e~Lr~~Gl~ 115 (232)
T 4b21_A 95 FPTPKQIMETDVETLHECGFS 115 (232)
T ss_dssp CCCHHHHHTSCHHHHHTTTCC
T ss_pred CCCHHHHHcCCHHHHHHcCCc
Confidence 678999999999999999986
No 88
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=28.23 E-value=1.1e+02 Score=19.12 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.1
Q ss_pred cCcHHHHHcCCHHHHhcCCCCCchHHHH
Q psy10378 13 ISSMEAVVRLTVAELNALGITLVGHQKK 40 (62)
Q Consensus 13 ~~~~~~~~~lt~~dL~~lGIt~~gh~kk 40 (62)
|-+.+.++.++.++|+.+|.. +-+.+
T Consensus 155 fPtp~~la~~~~~~Lr~~G~~--~~ra~ 180 (282)
T 1mpg_A 155 FPTPQRLAAADPQALKALGMP--LKRAE 180 (282)
T ss_dssp CCCHHHHHTCCHHHHHHTTSC--HHHHH
T ss_pred CCCHHHHHcCCHHHHHHcCCC--HHHHH
Confidence 558999999999999999986 44444
No 89
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=27.98 E-value=63 Score=16.09 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=15.4
Q ss_pred cCcHHHHHcCCHHHHhcC-CCC
Q psy10378 13 ISSMEAVVRLTVAELNAL-GIT 33 (62)
Q Consensus 13 ~~~~~~~~~lt~~dL~~l-GIt 33 (62)
|.+++.+...+.++|.++ ||.
T Consensus 44 fgsl~~l~~a~~eeL~~i~GIG 65 (78)
T 1kft_A 44 MGGLQGLRNASVEEIAKVPGIS 65 (78)
T ss_dssp HSCHHHHHHCCHHHHTTSSSTT
T ss_pred cCCHHHHHHCCHHHHHHCCCCC
Confidence 346778888888888776 565
No 90
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=27.51 E-value=64 Score=16.91 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=17.1
Q ss_pred CCCCCchHHHHHHHHHHHHHH
Q psy10378 30 LGITLVGHQKKIMNSIQAMRT 50 (62)
Q Consensus 30 lGIt~~gh~kkIl~~i~~l~~ 50 (62)
+++..++|...++..+..++.
T Consensus 1 i~~~~~~h~~~l~~~l~~l~~ 21 (120)
T 2if5_A 1 IGIPFPDHSSDILSGLNEQRT 21 (120)
T ss_dssp CCCCCTTHHHHHHHHHHHHHH
T ss_pred CCcCccchHHHHHHHHHHHHh
Confidence 567788999999988887764
No 91
>3sjq_C Small conductance calcium-activated potassium CHA protein 2; protein-protein complex, EF hand, calmodulin, calcium bindin binding protein; HET: PHU; 1.90A {Rattus norvegicus}
Probab=27.19 E-value=51 Score=17.87 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=11.1
Q ss_pred chHHHHHHHHHHH
Q psy10378 35 VGHQKKIMNSIQA 47 (62)
Q Consensus 35 ~gh~kkIl~~i~~ 47 (62)
.-||++.|.+|..
T Consensus 39 R~HQRk~L~AI~~ 51 (87)
T 3sjq_C 39 RKHQRKFLQAIHQ 51 (87)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHh
Confidence 3688999999998
No 92
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=25.42 E-value=90 Score=21.67 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHH
Q psy10378 6 DNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQ 46 (62)
Q Consensus 6 ~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~ 46 (62)
..+.++|+.++++++ .+.++|.++ +. ++--++|.+++.
T Consensus 671 r~L~~~g~~s~~~l~-~~~~~l~~~-l~-~~~~~~i~~~~~ 708 (715)
T 2va8_A 671 RLLYNNGIKELGDVV-MNPDKVKNL-LG-QKLGEKVVQEAA 708 (715)
T ss_dssp HHHHHTTCCSHHHHH-HCHHHHHHH-HC-HHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHh-CCHHHHHHH-hC-hhHHHHHHHHHH
Confidence 356689999999999 999999987 32 566666666544
No 93
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=25.33 E-value=78 Score=16.26 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=15.9
Q ss_pred cCcHHHHHcCCHHHHhcC-CCC
Q psy10378 13 ISSMEAVVRLTVAELNAL-GIT 33 (62)
Q Consensus 13 ~~~~~~~~~lt~~dL~~l-GIt 33 (62)
|.+++.+...+.++|..+ ||.
T Consensus 52 fgs~~~l~~as~~eL~~i~GIG 73 (91)
T 2a1j_B 52 FGSLEQLIAASREDLALCPGLG 73 (91)
T ss_dssp HSSHHHHHSCCHHHHHTSSSCC
T ss_pred CCCHHHHHhCCHHHHHhCCCCC
Confidence 346788888899999876 665
No 94
>2gax_A Hypothetical protein ATU0240; MCSG, structural genomics, agrobacterium tumfaciens, hypothe protein, PSI; 1.80A {Agrobacterium tumefaciens str} SCOP: c.131.1.1
Probab=24.97 E-value=7.9 Score=22.32 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=22.7
Q ss_pred HHHHcCCHHHHhcCCCCCchHHHHHH
Q psy10378 17 EAVVRLTVAELNALGITLVGHQKKIM 42 (62)
Q Consensus 17 ~~~~~lt~~dL~~lGIt~~gh~kkIl 42 (62)
+.+.....++|.-+||..+|.++.|=
T Consensus 100 ~~~~~~~~~~l~~~GI~l~Gp~k~Vd 125 (135)
T 2gax_A 100 QVFSHFSPDTAKVVGMALRADRKIVD 125 (135)
T ss_dssp HHHTTCCTTTCCEEEEEEEEEHHHHH
T ss_pred HHHhcCCcccceEEEEEEECCHHHHH
Confidence 45688999999999999999998874
No 95
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=24.52 E-value=16 Score=24.22 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHhhcCcCcHHHHHcCCHHHHhc
Q psy10378 6 DNFERGGISSMEAVVRLTVAELNA 29 (62)
Q Consensus 6 ~~f~~~g~~~~~~~~~lt~~dL~~ 29 (62)
..+.++|+.++.+++..|++||.+
T Consensus 268 NCLKra~I~tv~dL~~~se~dLlk 291 (329)
T 3lu0_A 268 NCLKAEAIHYIGDLVQRTEVELLK 291 (329)
T ss_dssp ------------------------
T ss_pred HHHHHcCCcCHHHHhhCCHHHHhh
Confidence 466788999999999999999854
No 96
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=24.01 E-value=1.3e+02 Score=18.39 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.8
Q ss_pred CcCcHHHHHcCCHHHHhcCCCC
Q psy10378 12 GISSMEAVVRLTVAELNALGIT 33 (62)
Q Consensus 12 g~~~~~~~~~lt~~dL~~lGIt 33 (62)
.|-+.+.++.++.++|..+|..
T Consensus 83 ~fPtp~~la~~~~e~Lr~~G~~ 104 (228)
T 3s6i_A 83 QFPTPEEIRDMDFEIMRACGFS 104 (228)
T ss_dssp SCCCHHHHHHSCHHHHHHHTCC
T ss_pred CCCCHHHHHcCCHHHHHHcCCC
Confidence 4678999999999999999987
No 97
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=23.77 E-value=82 Score=16.01 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=16.6
Q ss_pred cCcHHHHHcCCHHHHhcC-CCC
Q psy10378 13 ISSMEAVVRLTVAELNAL-GIT 33 (62)
Q Consensus 13 ~~~~~~~~~lt~~dL~~l-GIt 33 (62)
|.+++.+...+.++|..+ ||.
T Consensus 39 fgsl~~l~~a~~~eL~~i~GIG 60 (89)
T 1z00_A 39 FGSLEQLIAASREDLALCPGLG 60 (89)
T ss_dssp TCBHHHHHHCCHHHHHTSTTCC
T ss_pred CCCHHHHHhCCHHHHHhCCCCC
Confidence 456888889999999876 665
No 98
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=23.74 E-value=38 Score=18.91 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=23.3
Q ss_pred CHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378 23 TVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54 (62)
Q Consensus 23 t~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~ 54 (62)
+.+||....--...+|.+|...|..++.+...
T Consensus 72 ~~~~i~G~~~L~~eDQ~~I~~~i~~~~~~~~~ 103 (117)
T 1uw0_A 72 DLTELEGWEELEDNEKEQITQHIADLSSKAAG 103 (117)
T ss_dssp TTSSSBSTTTSCHHHHHHHHHHHHHHHCCSSS
T ss_pred ChHHCcChHHCCHHHHHHHHHHHHHhhccCCC
Confidence 34556655566678999999999888766544
No 99
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=23.10 E-value=17 Score=22.85 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=0.0
Q ss_pred HhhcCcCcHHHHHcCCHHHHhcC-CCCCchHHHHHHHHHHHHHH
Q psy10378 8 FERGGISSMEAVVRLTVAELNAL-GITLVGHQKKIMNSIQAMRT 50 (62)
Q Consensus 8 f~~~g~~~~~~~~~lt~~dL~~l-GIt~~gh~kkIl~~i~~l~~ 50 (62)
+.++||.+++.+...+.++|..+ ||. .--..+|+..+..+..
T Consensus 31 Ll~~gf~sve~L~~a~~~eL~~v~GIG-~ktAe~I~~~l~~~~~ 73 (241)
T 1vq8_Y 31 LREAGFESVEDVRGADQSALADVSGIG-NALAARIKADVGGLEV 73 (241)
T ss_dssp --------------------------------------------
T ss_pred HHHcCCCCHHHHHhCCHHHHHhccCCC-HHHHHHHHHHHHHHHh
Confidence 33448889999998899999886 666 4456677776665543
No 100
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=22.39 E-value=82 Score=20.07 Aligned_cols=20 Identities=10% Similarity=0.385 Sum_probs=17.7
Q ss_pred CCCCchHHHHHHHHHHHHHH
Q psy10378 31 GITLVGHQKKIMNSIQAMRT 50 (62)
Q Consensus 31 GIt~~gh~kkIl~~i~~l~~ 50 (62)
+|...||-..||+.++.|..
T Consensus 120 ~v~~~~h~~~~l~~~~~~~~ 139 (322)
T 4eo3_A 120 RVKVEGHVQEVKEALDRLIE 139 (322)
T ss_dssp SCCSTTHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHhhhch
Confidence 67888999999999999964
No 101
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=21.68 E-value=80 Score=15.12 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=16.0
Q ss_pred cCcHHHHHcCCHHHHhcC-CCC
Q psy10378 13 ISSMEAVVRLTVAELNAL-GIT 33 (62)
Q Consensus 13 ~~~~~~~~~lt~~dL~~l-GIt 33 (62)
|.+++.+...+.++|..+ ||.
T Consensus 34 fgs~~~l~~a~~~~L~~i~Gig 55 (75)
T 1x2i_A 34 FGSVERVFTASVAELMKVEGIG 55 (75)
T ss_dssp HCSHHHHHHCCHHHHTTSTTCC
T ss_pred cCCHHHHHhCCHHHHhcCCCCC
Confidence 456788888899999876 565
No 102
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=21.21 E-value=85 Score=21.31 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCHHHHhcCCCCCchH-HHHHHHHHHHHH
Q psy10378 22 LTVAELNALGITLVGH-QKKIMNSIQAMR 49 (62)
Q Consensus 22 lt~~dL~~lGIt~~gh-~kkIl~~i~~l~ 49 (62)
++..||.++|+. ||. -++||+.+....
T Consensus 378 i~G~DLi~~G~~-PGP~~G~iL~~l~~a~ 405 (441)
T 3h38_A 378 INGEYLIRKGIT-SGKIIGEVLEKILMKK 405 (441)
T ss_dssp SCCHHHHTTTCC-CSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHcCCC-CCcHHHHHHHHHHHHH
Confidence 889999999997 676 577777766543
No 103
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=20.76 E-value=75 Score=17.90 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=21.9
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378 25 AELNALGITLVGHQKKIMNSIQAMRTQLSA 54 (62)
Q Consensus 25 ~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~ 54 (62)
+++.+-..|.-.|+++|+..-..+|.-+++
T Consensus 46 a~~aDS~~Tr~e~RerIv~eCnavRqaLQd 75 (111)
T 4ehp_B 46 ALMADSSCTRDDRRERIVAECNAVRQALQD 75 (111)
T ss_dssp TCSCCCCSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 366677888899999999766666655443
No 104
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=20.38 E-value=51 Score=18.23 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=26.3
Q ss_pred cHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378 15 SMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53 (62)
Q Consensus 15 ~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~ 53 (62)
+..++..|+.+||+.+= +..-.|+.+.|.-.|..+.
T Consensus 50 tGaqLf~Ltk~eL~~vC---g~EG~RlysqL~~qk~~le 85 (99)
T 1wwu_A 50 TGPQLFSLNKEELKKVC---GEEGVRVYSQLTMQKAFLE 85 (99)
T ss_dssp CHHHHHTCCHHHHHHHH---TTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHcCCHHHHHHHC---cchhHHHHHHHHHHHHHHh
Confidence 78889999999998753 2455677777777776655
Done!