RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10378
(62 letters)
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 97
Score = 75.3 bits (185), Expect = 3e-20
Identities = 12/59 (20%), Positives = 23/59 (38%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEG 59
+ Y G S++ V L+ L GIT H +K++++ + + G
Sbjct: 35 LPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPPGPEAMSG 93
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 99
Score = 74.1 bits (182), Expect = 1e-19
Identities = 26/57 (45%), Positives = 40/57 (70%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLS 57
M +Y D+F G +S++ V ++T +L +GITL GHQKKI+NSI +MR Q+S + +
Sbjct: 34 MVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQISQSPT 90
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental
regulation, tyrosine kinase, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
SCOP: a.60.1.2
Length = 81
Score = 73.3 bits (180), Expect = 1e-19
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEG 59
M RY D+F GG SS+ V+R+ ++ ALGITL+GHQKKI+ SIQ MR QL++ G
Sbjct: 19 MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTSTQGSG 77
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing
protein 3; SAM domain, helix bundle, cell membrane,
cell projection, cytoplasm; NMR {Homo sapiens}
Length = 100
Score = 73.4 bits (180), Expect = 2e-19
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
+ +Y D F R G+++ A L EL LGI+ GH+K+I+ +Q + S
Sbjct: 38 LEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEGS 90
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase,
membrane, nucleotide- binding, phosphorylation, repeat,
signal, transferase; 2.10A {Homo sapiens}
Length = 83
Score = 72.1 bits (177), Expect = 3e-19
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
M RY ++F G S E V +++ +L +G+TL GHQKKI+ S+Q M++Q
Sbjct: 27 MGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQAK 79
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics,
structural genomics consortium, SGC, alternative
splicing, ATP-binding; 2.10A {Homo sapiens}
Length = 90
Score = 72.2 bits (177), Expect = 4e-19
Identities = 31/52 (59%), Positives = 41/52 (78%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
M RY DNF G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct: 37 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQM 88
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer;
1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Length = 82
Score = 70.6 bits (173), Expect = 2e-18
Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
M +Y ++F G +S + V ++ + ++ +G+TL GHQKKI+NSIQ MR Q++
Sbjct: 23 MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMN 75
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase,
nucleotide-binding, transferase, tyrosine-protein
kinase, signal, sterIle alpha motif; 2.40A {Homo
sapiens}
Length = 86
Score = 70.3 bits (172), Expect = 2e-18
Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
M +Y ++F G +++E VV++T ++ +G+ L GHQK+I S+ ++ Q++
Sbjct: 33 MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQVNT 86
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction
module, dimerization domain, transferase; 2.00A {Mus
musculus} SCOP: a.60.1.2
Length = 94
Score = 70.3 bits (172), Expect = 2e-18
Identities = 26/53 (49%), Positives = 38/53 (71%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
M RY DNF G +++EAVV ++ +L +GIT + HQ KI++S+QAMRTQ+
Sbjct: 38 MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQ 90
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell
signaling, angiogenesis, apopt ATP-binding, cataract;
NMR {Homo sapiens}
Length = 82
Score = 69.8 bits (171), Expect = 3e-18
Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
M +Y ++F G +++E VV++T ++ +G+ L GHQK+I S+ ++ Q++
Sbjct: 28 MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQVNT 81
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 69.5 bits (170), Expect = 5e-18
Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
M +Y ++F G +++E VV++T ++ +G+ L GHQK+I S+ ++ Q++
Sbjct: 24 MQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKDQVNT 77
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal
transduction, SAM domain, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: a.60.1.2
Length = 91
Score = 69.2 bits (169), Expect = 8e-18
Identities = 11/53 (20%), Positives = 31/53 (58%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
+ +YL +F G ++++ + + L +GI+ GH+++I+ +Q + +++
Sbjct: 27 LEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKMQ 79
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase,
nucleotide-binding, transferase, tyrosine-protein
kinase, signal, sterIle alpha motif; 2.00A {Homo
sapiens} PDB: 3kka_A
Length = 82
Score = 67.2 bits (164), Expect = 3e-17
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
M RY+ +F G+ +ME V+ LT +L +GITL GHQK+I+ SIQ
Sbjct: 35 MKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGF 82
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix
bundle, signaling protein, actin-binding, alternative
splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Length = 86
Score = 66.4 bits (162), Expect = 7e-17
Identities = 9/49 (18%), Positives = 24/49 (48%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
+ RY + G +E + +T +L G+ H++ +++++Q +
Sbjct: 38 LERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLSK 86
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling
protein; 2.40A {Homo sapiens} PDB: 3sen_A
Length = 149
Score = 67.8 bits (165), Expect = 1e-16
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
+A+Y G +++ + +T +L +GIT +GHQKK+M +++ +
Sbjct: 91 LAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAEL 141
Score = 37.3 bits (86), Expect = 5e-05
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
+ Y NF G + + R+T +L A+G+T GH+KKI I +
Sbjct: 22 LQLYAPNFISAGY-DLPTISRMTPEDLTAIGVTKPGHRKKIAAEISGL 68
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, alternative splicing, ANK repeat, cell
junction, cell membrane; NMR {Homo sapiens}
Length = 103
Score = 61.9 bits (150), Expect = 8e-15
Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 1 MARYLDNFERGGISSMEAVVR--LTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLS 57
+ +Y ++ G +++ + + +L +GI GH+++I+ +IQ +
Sbjct: 34 LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHD 92
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical
protein, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: a.60.1.2
Length = 78
Score = 60.6 bits (147), Expect = 1e-14
Identities = 6/54 (11%), Positives = 24/54 (44%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
+ Y G +++ + + + L L I + +++++ +++ + S+
Sbjct: 24 LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGPSS 77
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 80
Score = 59.5 bits (144), Expect = 3e-14
Identities = 11/56 (19%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 1 MARYLDNFERGGISSMEAVVR--LTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
+ +Y ++ G +++ + + +L +GI GH+++I+ +IQ + + S+
Sbjct: 24 LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPSGPSS 79
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, tandem, signaling protein, alternative
splicing, ANK repeat; NMR {Homo sapiens}
Length = 148
Score = 58.6 bits (141), Expect = 3e-13
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQ 46
+ Y F G +SM+ + ++ EL N L I L+GH+K+I+ S+
Sbjct: 100 LGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLG 146
Score = 35.1 bits (80), Expect = 3e-04
Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MARYLDNFERGGISSMEAV--VRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
+ +Y ++ G +++A+ + +L +GI GH+++I+ +IQ +
Sbjct: 26 LPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKM 78
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling
protein; NMR {Homo sapiens}
Length = 101
Score = 56.9 bits (137), Expect = 5e-13
Identities = 7/51 (13%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 1 MARYLDNFERGGISSMEAV--VRLTVAELNALGITLVGHQKKIMNSIQAMR 49
+ +Y G + + + +L +GI+ H++K++ + +++
Sbjct: 41 LQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLP 91
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 52.8 bits (127), Expect = 1e-11
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEG 59
+ +Y+ NFER IS + ++R+T EL LG++ +GHQ+ I+ ++ + L++ S G
Sbjct: 27 LQQYIKNFEREKISG-DQLLRITHQELEDLGVSRIGHQELILEAVDLLC-ALNSGPSSG 83
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density,
SAM domain, shank, scaffolding protein, structural
protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB:
2f44_A
Length = 76
Score = 52.4 bits (126), Expect = 2e-11
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
+ + D FE I + LT + LG+T VGH++ I +++ +
Sbjct: 19 LGEHRDRFEDHEIE-GAHLPALTKEDFVELGVTRVGHRENIERALRQLDGS 68
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM
domain, pointed domain, SCM domain, STE50 regulator,
transferase; NMR {Saccharomyces cerevisiae} SCOP:
a.60.1.2 PDB: 1x9x_A
Length = 85
Score = 51.1 bits (122), Expect = 9e-11
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN 55
+YLD+F + + + E + L L ALG+ +G + KI+ ++ +
Sbjct: 27 CTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQRDKRIE 81
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction,
protein binding; NMR {Rattus norvegicus}
Length = 74
Score = 47.3 bits (113), Expect = 2e-09
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
+ +Y+ F IS E +++L +L ALG+T + + ++ M+
Sbjct: 21 LDQYVSEFSAQNIS-GEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMS 70
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain
complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 47.1 bits (112), Expect = 2e-09
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
+ +Y+ NFER IS + ++R+T EL LG++ +GHQ+ I+ ++ +
Sbjct: 23 LQQYIKNFEREKIS-GDQLLRITHQELEDLGVSRIGHQELILEAVDLLC 70
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain,
alternative splicing, cytoplasm, membrane,
metal-binding, phorbol-ester binding; 2.90A {Homo
sapiens}
Length = 81
Score = 47.0 bits (112), Expect = 3e-09
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
+ Y D F R I ++ L +L LG+T VGH K+I+ I+ +
Sbjct: 24 LCEYKDIFTRHDIR-GSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSRS 73
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural
genomics, protein regulation, transcription; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 47.1 bits (112), Expect = 3e-09
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 4 YLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSE 58
FE + + +++L L AL + +GHQ+ I+ ++ ++ S +E
Sbjct: 31 QDYPFEDWQLPG-KNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSSRLQTE 84
>3k1r_B Usher syndrome type-1G protein; protein-protein complex,
alternative splicing, coiled coil, deafness, hearing,
non-syndromic deafness, polymorphism; 2.30A {Homo
sapiens}
Length = 74
Score = 43.2 bits (102), Expect = 9e-08
Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
M + + I +EA++ + +L ++ + L G ++KI+ +++ R +
Sbjct: 14 MEDFAALLRQEKID-LEALMLCSDLDLRSISVPL-GPREKILGAVRRRRQAME 64
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 103
Score = 43.7 bits (103), Expect = 1e-07
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSE 58
L N I+ + L + LG++ +G +KK+++ IQ + Q+ + +
Sbjct: 46 EPVLLKNIRENEIT-GALLPCLDESRFENLGVSSLGERKKLLSYIQRLV-QIHVDTMK 101
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm,
membrane, sensory transduction, vision, signaling
protein; 1.90A {Drosophila melanogaster}
Length = 78
Score = 42.5 bits (100), Expect = 1e-07
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
+Y F + I+ A++R+T + L +G+T ++ I I R +
Sbjct: 22 YTQYEQLFAQHDITG-RALLRITDSSLQRMGVTDNRDREAIWREIVKQRLK 71
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain
dimer, SAM domain complex, cytoplasm, membrane; 2.00A
{Drosophila melanogaster}
Length = 106
Score = 41.5 bits (97), Expect = 8e-07
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
+Y F + I+ A++R+T + L +G+T ++ I I R +
Sbjct: 42 YTQYEQLFAQHDITG-RALLRITDSSLQRMGVTDNRDREAIWREIVKQRLK 91
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR
{Saccharomyces cerevisiae}
Length = 119
Score = 41.2 bits (96), Expect = 1e-06
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 3 RYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANL 56
+Y D + ++ L L G+ +G ++K++ + + +L
Sbjct: 63 KYSDALSG---TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKERDL 113
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Length = 265
Score = 41.7 bits (97), Expect = 2e-06
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
+ +Y F+ G + + +TV +L +L + V H I +IQ +R
Sbjct: 104 LPQYKTQFDEGRVDG-RMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLR 151
Score = 30.9 bits (69), Expect = 0.014
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQAMRTQ 51
+ YL + + IS + +++ + +L LGI H+KK+ ++QA+ ++
Sbjct: 32 LGSYLSSGKHWIIS-GQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSE 82
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR
{Saccharomyces cerevisiae} PDB: 2ese_A
Length = 101
Score = 39.2 bits (91), Expect = 4e-06
Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
+ +Y D + ++ L L G+ +G ++K++ + +
Sbjct: 43 LHKYSDALSG---TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVI 88
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA
binding protein; 1.60A {Saccharomyces cerevisiae} PDB:
2f8k_A 2fe9_A
Length = 88
Score = 38.7 bits (90), Expect = 6e-06
Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
+ +Y D + ++ L L G+ +G ++K++ + +
Sbjct: 30 LHKYSDALSG---TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVI 75
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 91
Score = 36.9 bits (85), Expect = 3e-05
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAEL--NALGITLVGHQKKIMNSIQAMRTQLSA 54
+ Y D F ++ ++ LT E I H++ I+ ++ +R+ S+
Sbjct: 36 ASLYRDRFLSERVNG-RLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSGPSS 90
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 37.3 bits (87), Expect = 6e-05
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 1 MARYLDNFERGGISSMEAVVRLT 23
A + F SS + + +++
Sbjct: 351 TAHCKEIFTGVEYSSCDTIAKIS 373
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding
protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2
PDB: 1pk1_A
Length = 89
Score = 33.3 bits (76), Expect = 8e-04
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 2 ARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQAMRTQLSANLSE 58
Y+D+F + I +A++RL L NA+G+ L G KI+ +++++ +
Sbjct: 33 QDYVDDFIQQEID-GQALLRLKEKHLVNAMGMKL-GPALKIVAKVESIKEVRDHHHHH 88
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 32.2 bits (73), Expect = 0.002
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 2 ARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQAMRTQLSANLSE 58
A + D F + I +A++RL + +G+ L G KI N + + + +
Sbjct: 34 AVHGDLFRKHEID-GKALLRLNSERMMKYMGLKL-GPALKICNLVNKVNGRDHHHHHH 89
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo
sapiens} PDB: 3tad_A
Length = 334
Score = 30.7 bits (68), Expect = 0.018
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQAMRTQ 51
+ +Y F + + + LT +L L + H+ + I ++
Sbjct: 175 LPQYRSYFMECLVDARM-LDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRL 225
Score = 30.3 bits (67), Expect = 0.024
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 2 ARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQAMRTQLS 53
A Y+ S + L+ E+ +GI+ H+ K+ +IQ M + S
Sbjct: 56 AWYVAACRANVKSGAI-MSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTS 107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.13
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 9 ERGGISSMEAVVRLTVAE-LNALGI--TL 34
E+ + ++A ++L + AL I T+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 27.3 bits (60), Expect = 0.24
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAE----LNALGITLVGHQKKIMNSIQAMRTQL 52
+ +Y + F + +S A+ RL V L +T H++K+ ++A+ T L
Sbjct: 96 LPQYEETFRKLQLSGH-AMPRLAVTNTTMTGTVLKMTDRSHRQKLQ--LKALDTVL 148
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 26.9 bits (59), Expect = 0.30
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAE----LNALGITLVGHQKKIMNSIQAMRTQL 52
+ +Y NF + + R+ V E ++ L I+ H++K+ ++A+ L
Sbjct: 96 LPQYEKNFRDNNVKGT-TLPRIAVHEPSFMISQLKISDRSHRQKLQ--LKALDVVL 148
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 1.1
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 21/68 (30%)
Query: 6 DNFERG-GI-SSMEAVVRLT-------VAELNA-------LGITLV-GHQKKIM----NS 44
D+ E G+ S M ++ LT V + N+ + I+LV G + ++ S
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 45 IQAMRTQL 52
+ + L
Sbjct: 386 LYGLNLTL 393
>2guj_A Phage-like element PBSX protein XKDM; X-RAY, SR353, structural
genomics, PSI, protein structure initiative; 3.00A
{Bacillus subtilis} SCOP: b.106.1.3
Length = 155
Score = 24.2 bits (52), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 4 YLDNFERGGISSMEAVVRLTVAELNALGITLVGH 37
+LD E I + EA V +E+N +G + GH
Sbjct: 17 FLDGEEMAHIKTFEANVEKNKSEVNIMGRRMTGH 50
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 23.8 bits (52), Expect = 3.8
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 3/30 (10%)
Query: 11 GGISSMEAVVRLTVAELNALGI---TLVGH 37
+ + + L L+ TL G+
Sbjct: 61 DETWNFDYITTLLDRILDKYKDKSITLFGY 90
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, KI glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A*
2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A*
2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A*
...
Length = 416
Score = 23.7 bits (52), Expect = 5.3
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 5 LDNFERGGISSMEAVVRLTVAELNALGITLVG 36
+ F RG + M+ VV+ T IT++G
Sbjct: 344 WEAFARGTKALMDEVVKATSRG----CITIIG 371
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2ykr_B 3fih_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B
3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 3i1m_B
1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B ...
Length = 218
Score = 23.2 bits (51), Expect = 5.7
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 13/49 (26%)
Query: 1 MARYLDNFER--GGISSMEA------VV-----RLTVAELNALGITLVG 36
R L+ E GGI M V+ + + E N LGI +
Sbjct: 129 RTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFA 177
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi
malaria parasite; 2.70A {Plasmodium falciparum} PDB:
1ltk_A* 3oza_A
Length = 417
Score = 23.3 bits (51), Expect = 7.3
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 6 DNFERGGISSMEAVVRLTVAELNALGITLVG 36
NF +G I + VV +T IT+VG
Sbjct: 347 PNFAKGSIECLNLVVEVTKKG----AITIVG 373
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria
isoprenoid biosynthesis and prenylation pathways ISPF;
2.26A {Plasmodium vivax sai-1}
Length = 187
Score = 23.1 bits (50), Expect = 7.3
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 12 GISSM---EAVVRLTVA---ELNALGITLVGHQKKIMNSIQAMRTQLSANL 56
+S+ L + + I ++ KI + + +S+ L
Sbjct: 98 NKNSLSFLRYARLLLYKRNYAIANVDIIVIAEVPKISPIREEIVRNISSAL 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.346
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 870,039
Number of extensions: 37854
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 56
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)