RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10378
(62 letters)
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 61.5 bits (149), Expect = 2e-15
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEG 59
M RY D+F GG SS+ V+R+ ++ ALGITL+GHQKKI+ SIQ MR QL++ G
Sbjct: 19 MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTSTQGSG 77
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 58.4 bits (141), Expect = 3e-14
Identities = 26/53 (49%), Positives = 38/53 (71%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
M RY DNF G +++EAVV ++ +L +GIT + HQ KI++S+QAMRTQ+
Sbjct: 16 MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQ 68
>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo
sapiens) [TaxId: 9606]}
Length = 78
Score = 54.9 bits (132), Expect = 7e-13
Identities = 11/52 (21%), Positives = 31/52 (59%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
+ +YL +F G ++++ + + L +GI+ GH+++I+ +Q + +++
Sbjct: 20 LEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKM 71
>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 74
Score = 51.5 bits (123), Expect = 2e-11
Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
M +Y ++F G +S + V ++ + ++ +G+TL GHQKKI+NSIQ MR Q++
Sbjct: 18 MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMN 70
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 78
Score = 49.2 bits (117), Expect = 1e-10
Identities = 6/54 (11%), Positives = 24/54 (44%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
+ Y G +++ + + + L L I + +++++ +++ + S+
Sbjct: 24 LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGPSS 77
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains
3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Length = 64
Score = 46.8 bits (111), Expect = 7e-10
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
+ + D FE I + LT + LG+T VGH++ I +++ +
Sbjct: 18 LGEHRDRFEDHEIE-GAHLPALTKEDFVELGVTRVGHRENIERALRQL 64
>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor
of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 42.7 bits (100), Expect = 6e-08
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
+ FE + +++L L AL + +GHQ+ I+ ++ ++
Sbjct: 21 DSLQDYPFEDWQLPGK-NLLQLCPQSLEALAVRSLGHQELILGGVEQLQAL 70
>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 60
Score = 40.8 bits (95), Expect = 2e-07
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
+YLD+F + + + E + L L ALG+ +G + KI+ ++ +
Sbjct: 12 CTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQ 60
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 40.6 bits (95), Expect = 2e-07
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
++ F G+ S+ + LT+ +L AL I ++ I +Q +
Sbjct: 11 CPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIP-EQYRMTIWRGLQDL 57
>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug
{Drosophila melanogaster [TaxId: 7227]}
Length = 62
Score = 37.6 bits (87), Expect = 4e-06
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
+ +Y++ F+ M + +T L ++G+T G K+ I ++
Sbjct: 17 LHKYIELFKNMTYEEM---LLITEDFLQSVGVTK-GASHKLALCIDKLK 61
>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster
[TaxId: 7227]}
Length = 70
Score = 37.1 bits (86), Expect = 6e-06
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
Y+D+F + I +A++RL L +G KI+ +++++
Sbjct: 23 CQDYVDDFIQQEID-GQALLRLKEKHLVNAMGMKLGPALKIVAKVESIK 70
>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 63
Score = 34.5 bits (79), Expect = 6e-05
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
+A + D F + I +A++RL + +G KI N + +
Sbjct: 17 LAVHGDLFRKHEID-GKALLRLNSEMMMKYMGLKLGPALKICNLVNKV 63
>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 30.3 bits (68), Expect = 0.004
Identities = 7/51 (13%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLV--GHQKKIMNSIQAMR 49
M Y + E + + ++ LT + + V + +++++ I+ ++
Sbjct: 28 MPEYCEPLEH---FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLK 75
>d2guja1 b.106.1.3 (A:5-143) Phage-like element PBSX protein XkdM
{Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 24.7 bits (54), Expect = 0.60
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 4 YLDNFERGGISSMEAVVRLTVAELNALGITLVGH 37
+LD E I + EA V +E+N +G + GH
Sbjct: 13 FLDGEEMAHIKTFEANVEKNKSEVNIMGRRMTGH 46
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
typhimurium [TaxId: 90371]}
Length = 417
Score = 24.9 bits (54), Expect = 0.63
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 8/44 (18%)
Query: 1 MARYLDNFERG--------GISSMEAVVRLTVAELNALGITLVG 36
+ E G R T+ +LN G +G
Sbjct: 373 ARKVKAALETGASPGDFPREDYETTWEGRFTLRDLNIHGKRALG 416
>d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans
[TaxId: 162425]}
Length = 519
Score = 22.3 bits (47), Expect = 6.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 16 MEAVVRLTVAELNALGITLVGHQK 39
M A L A G+ +V HQK
Sbjct: 479 MRAYGELVQEPEMANGVDVVTHQK 502
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.346
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 193,104
Number of extensions: 5806
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 16
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)