BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10386
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
+I++ ++S++ + + + L +L+L++N+LR IPPR F L L L L GN I
Sbjct: 58 LIDLSNNRISTLSNQ--SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 61 TVDPAAFSGLE--------DNPLVCTCDLMWYKEWSTS 90
V AF+ L NPL C C++ W +W S
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73
L +L L L +NQL+ +P F L L +L+LD N + V AF LE +N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Query: 74 PLVCTCD-LMWYKEWSTSLGEKEDE 97
P CTC+ +++ +W L +K DE
Sbjct: 216 PWDCTCNGIIYMAKW---LKKKADE 237
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL L L NQL+++PPRVF L L L L N + ++ F L
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL++L + N+L+ +P VF L L L LD N + ++ P F L
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
+++ +LSS+ K L L L L N+L+T+P +F L L +L + N +
Sbjct: 42 LDLQSNKLSSLPSKAFHR--LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 62 VDPAAFSGL 70
+ F L
Sbjct: 100 LPIGVFDQL 108
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 18 TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
T L NL SL+L+HN L I F +P L L+L NH+HT+D FS L+
Sbjct: 59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73
L NL L N+L IP VF L L L+L+ NH+ ++ AF L+ +N
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Query: 74 PLVCTC-DLMWYKEW 87
P C C D+M+ + W
Sbjct: 116 PWDCECRDIMYLRNW 130
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED-------- 72
GL +L +L+L N++ + F L + L L N I TV P AF L
Sbjct: 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162
Query: 73 NPLVCTCDLMWYKEW 87
NP C C L W EW
Sbjct: 163 NPFNCNCYLAWLGEW 177
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GL NLD+L+L N L TIP F G+H+ F+ L NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81 LMWYKEW 87
+++++ W
Sbjct: 213 ILYFRRW 219
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
K+ G L L +L L+HNQL+++ P + LP L L++ N + ++ A GL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 17/68 (25%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC 79
GL NLD+L+L N L TIP F G+H+ F+ L NP +C C
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNC 211
Query: 80 DLMWYKEW 87
++++++ W
Sbjct: 212 EILYFRRW 219
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
K+ G L L +L L+HNQL+++ P + LP L L++ N + ++ A GL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 17/68 (25%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC 79
GL NLD+L+L N L TIP F G+H+ F+ L NP +C C
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNC 211
Query: 80 DLMWYKEW 87
++++++ W
Sbjct: 212 EILYFRRW 219
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
K+ G L L +L L+HNQL+++ P + LP L L++ N + ++ A GL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GL NLD+L+L N L TIP F G+H+ F+ L NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81 LMWYKEW 87
+++++ W
Sbjct: 213 ILYFRRW 219
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
K+ G L L +L L+HNQL+++ P + LP L L++ N + ++ A GL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GL NLD+L+L N L TIP F G+H+ F+ L NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81 LMWYKEW 87
+++++ W
Sbjct: 213 ILYFRRW 219
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
K+ G L L +L L+HNQL+++ P + LP L L++ N + ++ A GL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GL NLD+L+L N L TIP F G+H+ F+ L NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81 LMWYKEW 87
+++++ W
Sbjct: 213 ILYFRRW 219
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
K+ G L L +L L+HNQL+++ P + LP L L++ N + ++ A GL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GL NLD+L+L N L TIP F G+H+ F+ L NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81 LMWYKEW 87
+++++ W
Sbjct: 213 ILYFRRW 219
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
K+ G L L +L L+HNQL+++ P + LP L L++ N + ++ A GL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GL NLD+L+L N L TIP F G+H+ F+ L NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81 LMWYKEW 87
+++++ W
Sbjct: 213 ILYFRRW 219
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
K+ G L L +L L+HNQL+++ P + LP L L++ N + ++ A GL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GL NLD+L+L N L TIP F G+H+ F+ L NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81 LMWYKEW 87
+++++ W
Sbjct: 213 ILYFRRW 219
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
K+ G L L +L L+HNQL+++ P + LP L L++ N + ++ A GL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GL NLD+L+L N L TIP F G+H+ F+ L NP +C C+
Sbjct: 171 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 213
Query: 81 LMWYKEW 87
+++++ W
Sbjct: 214 ILYFRRW 220
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
K+ G L L +L L+HNQL+++ P + LP L L++ N + ++ A GL
Sbjct: 70 KLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL 124
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GLH L +L L NQ+ + P F HL L SL L NP C C
Sbjct: 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL----------------NLASNPFNCNCH 143
Query: 81 LMWYKEW 87
L W+ EW
Sbjct: 144 LAWFAEW 150
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 28 LVLAHNQL-RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69
L+L N+L R +F LP L LEL N + ++P AF G
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDN 73
L NL+S+ N+LR +P +F +P L L L N + +V F L N
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Query: 74 PLVCTCDLMWY-KEWSTSLGEKE 95
P C+C + Y W +KE
Sbjct: 229 PWDCSCPRIDYLSRWLNKNSQKE 251
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 6 GGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65
G ++SS+ E+ GLH+LD L+L N++ + P F L L +L L N++ +
Sbjct: 161 GNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 218
Query: 66 AFSGLE--------DNPLVCTC 79
A + L DNP VC C
Sbjct: 219 ALAPLRALQYLRLNDNPWVCDC 240
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
GL L L L N L+ +P F L L L L GN I +V AF GL
Sbjct: 126 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 176
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 18 TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
T L NL L L N++ ++P R F L L+ L L N + V P AF L
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 10 SSIFEKV--ATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 66
S++ ++ A GL L+ L L+ N QLR++ P F L L++L LD + + P
Sbjct: 64 SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 123
Query: 67 FSGL 70
F GL
Sbjct: 124 FRGL 127
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 6 GGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65
G ++SS+ E+ GLH+LD L+L N++ + P F L L +L L N++ +
Sbjct: 162 GNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219
Query: 66 AFSGLE--------DNPLVCTC 79
A + L DNP VC C
Sbjct: 220 ALAPLRALQYLRLNDNPWVCDC 241
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
GL L L L N L+ +P F L L L L GN I +V AF GL
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 18 TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
T L NL L L N++ ++P R F L L+ L L N + V P AF L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Score = 29.6 bits (65), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 10 SSIFEKV--ATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 66
S++ ++ A GL L+ L L+ N QLR++ P F L L++L LD + + P
Sbjct: 65 SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124
Query: 67 FSGL 70
F GL
Sbjct: 125 FRGL 128
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------DN 73
GL L +L + + LR + P F P L+ L L N + ++ GL N
Sbjct: 54 GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
Query: 74 PLVCTCDLMWYKEW 87
PL C+C L W + W
Sbjct: 114 PLHCSCALRWLQRW 127
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDN 73
L L + L QL + P F L L L + GN + T++ + F L+ N
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Query: 74 PLVCTCDLMWY--KEWSTSLGEKE 95
PL C C L+W + W + ++
Sbjct: 331 PLACDCRLLWVFRRRWRLNFNRQQ 354
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 28 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L N+++T+ FA P L LEL+ N + V+P AF+ L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL 79
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL NL L ++ N++ + +F L L SLE+ N + + AFSGL
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 9 LSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68
LSSI + TS L ++ + L+HN+L + +HL + L L NHI + P+
Sbjct: 488 LSSIDQHAFTS--LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544
Query: 69 --------GLEDNPLVCTCD----LMWYKEWSTSLGEKED 96
L NPL CTC L WYKE L + ED
Sbjct: 545 ILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTED 584
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59
LH L L L+H+ L ++F LP L L L GNH
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 12 IFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+F+K L NL L L HNQL+++P VF L L L+LD N + ++ F L
Sbjct: 128 VFDK------LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 6 GGQLSS----IFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
G QL S +F+K L NL LVL NQL+++P VF L L L L N + +
Sbjct: 94 GNQLQSLPNGVFDK------LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS 147
Query: 62 VDPAAFSGLED 72
+ F L +
Sbjct: 148 LPKGVFDKLTN 158
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED 72
L NL L+L NQL+++P VF L L L L N + ++ F L +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 19/87 (21%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
+++ QL S+ E V L L L L NQL+++P VF L L HI
Sbjct: 162 LDLDNNQLQSLPEGVF--DKLTQLKQLSLNDNQLKSVPDGVFDRLTSL-------THI-- 210
Query: 62 VDPAAFSGLEDNPLVCTC-DLMWYKEW 87
L +NP C C D+++ W
Sbjct: 211 -------WLLNNPWDCACSDILYLSRW 230
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 27/94 (28%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV------------------ 62
GL +L L L HN L ++PP VF+HL L L L+ N + +
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQ 537
Query: 63 ----DPAAFSGLE-----DNPLVCTCDLMWYKEW 87
+P F L N +C C+L + W
Sbjct: 538 LLAPNPDVFVSLSVLDITHNKFICECELSTFINW 571
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 37 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
TI F +LP L L+L + I+ + P AF GL
Sbjct: 63 TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
+E+ G +L I + + GL +L L L H Q+ TI F L L L L N++ +
Sbjct: 183 LELSGNRLDLI--RPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Query: 62 VDPAAFS--------GLEDNPLVCTCDLMWYKEW 87
+ F+ L NP C CD++W W
Sbjct: 241 LPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWW 274
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68
+V GL +L++L L N+L T+P + F +L L L L N I ++ AF+
Sbjct: 75 EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFN 128
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ T L +L+ L L+ N +R I F LP LN+LEL N + TV AF L
Sbjct: 51 RTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYL 106
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 17 ATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
A GL NL L L L+ IP L L LEL GN + + P +F GL
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQGL 201
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
N L L N ++ I F HL L L+L N + ++ AF+GL
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGL 82
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
+E+ G +L I + + GL +L L L H Q+ TI F L L L L N++ +
Sbjct: 183 LELSGNRLDLI--RPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Query: 62 VDPAAFS--------GLEDNPLVCTCDLMWYKEW 87
+ F+ L NP C CD++W W
Sbjct: 241 LPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWW 274
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68
+V GL +L++L L N+L T+P + F +L L L L N I ++ AF+
Sbjct: 75 EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFN 128
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ T L +L+ L L+ N +R I F LP LN+LEL N + TV AF L
Sbjct: 51 RTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYL 106
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL NL L L L+ IP L L LEL GN + + P +F GL
Sbjct: 154 GLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQGL 201
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
N L L N ++ I F HL L L+L N + ++ AF+GL
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGL 82
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L +L LA+NQL ++P VF HL L+ L L GN + ++ F L
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
+ + G QL S+ V L L L L NQL++IP F L L +L L N + +
Sbjct: 112 LYLGGNQLKSLPSGVFDR--LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 62 VDPAAFSGLED--------NPLVCT-CDLMWYKEW 87
V AF L N C+ C++++ +W
Sbjct: 170 VPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW 204
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L +L LA+NQL ++P VF HL L+ L L GN + ++ F L
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
+ + G QL S+ V L L L L NQL++IP F L L +L L N + +
Sbjct: 112 LYLGGNQLKSLPSGVFDR--LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 62 VDPAAFSGLED--------NPLVCT-CDLMWYKEW 87
V AF L N C+ C+ ++ +W
Sbjct: 170 VPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQW 204
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL L LAHNQL+++P VF L L L+L N + ++ F L
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 6 GGQLSS----IFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
G QL S +F+K L NL LVL NQL+++P VF L L L L N + +
Sbjct: 94 GNQLQSLPNGVFDK------LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147
Query: 62 VDPAAFSGLED 72
+ F L +
Sbjct: 148 LPKGVFDKLTN 158
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED 72
L NL L+L NQL+++P VF L L L L N + ++ F L +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
+++ QL S+ E V L L L L NQL+++P VF L L
Sbjct: 162 LDLSYNQLQSLPEGVFDK--LTQLKDLRLYQNQLKSVPDGVFDRLTSL------------ 207
Query: 62 VDPAAFSGLEDNPLVCTC-DLMWYKEW 87
+ L DNP CTC + + EW
Sbjct: 208 ----QYIWLHDNPWDCTCPGIRYLSEW 230
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 36.6 bits (83), Expect = 0.007, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLM 82
H + L + N +R +PP VF ++PLL L L+ N + ++ F + P + T +
Sbjct: 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF---HNTPKLTTLSMS 155
Query: 83 WYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLP 124
+ +L ED+ ++ L S+ + LS +P
Sbjct: 156 -----NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 192
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 26/131 (19%)
Query: 11 SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
S+ E+ A G L +L L LAHN L ++P +F PL +EL H+H
Sbjct: 255 SLIERNAFDG-LASLVELNLAHNNLSSLPHDLFT--PLRYLVEL---HLH---------- 298
Query: 71 EDNPLVCTCDLMWYKEW--------STSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSD 122
NP C CD++W W ST G R R + + ++ + D
Sbjct: 299 -HNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMD 357
Query: 123 LPKQL-VCEGE 132
P+ L + EG
Sbjct: 358 APRDLNISEGR 368
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68
+V GL +L++L L N L IP F +L L L L N I ++ AF+
Sbjct: 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMW 83
N L L N ++ I F HL L L+L N I ++ AF+GL + T +L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS---LNTLEL-- 130
Query: 84 YKEWSTSLGEKEDEQMSRKR 103
+ W T + E +S+ R
Sbjct: 131 FDNWLTVIPSGAFEYLSKLR 150
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
LH+L+ L L N +R I F L LN+LEL N + + AF L
Sbjct: 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL NL L L ++ +P L L LE+ GNH + P +F GL
Sbjct: 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGL 241
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED 72
N L L NQ++ I F HL L L+L NHI T++ AF+GL +
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL NL L LA LR IP L L+ L+L GNH+ + P +F GL
Sbjct: 183 GLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68
++ GL NL++L L N+L TIP F +L L L L N I ++ AF+
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
+++ G LS+I + + GL +L L + +Q++ I F +L L + L N++
Sbjct: 212 LDLSGNHLSAI--RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269
Query: 62 VDPAAFS--------GLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRT 104
+ F+ L NP C CD++W W + +R T
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNT 320
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
KV + L +L+ L L+ N +RTI F L LN+LEL N + T+ AF L
Sbjct: 80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 23/115 (20%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP--------AAFSGLED 72
GL N++ L L+HN L +HL L L + N+I + P + L
Sbjct: 497 GLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSH 555
Query: 73 NPLVCTCD----LMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDL 123
NPL CTC + WYKE +L + ED + T C S R +KLSD+
Sbjct: 556 NPLDCTCSNIHFITWYKE---NLHKLEDSE----ETTCANPPS---LRGVKLSDV 600
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 6 GGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65
G ++ S+ E GLH+LD L+L N + + P F L L +L L N++ ++ PA
Sbjct: 161 GNRIPSVPEHAFR--GLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL-SMLPA 217
Query: 66 ---------AFSGLEDNPLVCTC 79
+ L DNP VC C
Sbjct: 218 EVLVPLRSLQYLRLNDNPWVCDC 240
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
GL L L L N L+ +P F L L L L GN I +V AF GL
Sbjct: 126 GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLH 176
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL L L N++ ++P F L L+ L L NH+ V P AF L
Sbjct: 151 LGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDL 199
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 16 VATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
A GL L+ L L+ N QLR + P F L L++L LD + + P F GL
Sbjct: 72 AAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGL 127
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 17 ATSGGLH--NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED 72
+T GL NL L L++N L + F++LP L L L+ N+I + P +F GL +
Sbjct: 240 STFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSN 297
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
N+ L L HNQLR +PP F L L+ N I ++P
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNP 74
+V LHNL+ L L N+L+TI F+ L + ++ L NP
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH----------------LAQNP 163
Query: 75 LVCTCDLMWYKEW 87
+C C L W ++
Sbjct: 164 FICDCHLKWLADY 176
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
+ + L N ++ IPP F+ L ++L N I + P AF GL
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69
L + L++NQ+ + P F L LNSL L GN I + + F G
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 15 KVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNP 74
+V LHNL+ L L N+L+TI F+ L + ++ L NP
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH----------------LAQNP 163
Query: 75 LVCTCDLMWYKEW 87
+C C L W ++
Sbjct: 164 FICDCHLKWLADY 176
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
+ + L N ++ IPP F+ L ++L N I + P AF GL
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69
L + L++NQ+ + P F L LNSL L GN I + + F G
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL +L L L+ N L +I R+F +L L L+L NHI + +F GL
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 17/76 (22%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GL NL L L NQL+++P +F L L + L HT NP C+C
Sbjct: 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL-----HT-----------NPWDCSCP 412
Query: 81 LMWY-KEWSTSLGEKE 95
+ Y W +KE
Sbjct: 413 RIDYLSRWLNKNSQKE 428
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69
H + L + N +R +PP VF ++PLL L L+ N + ++ F
Sbjct: 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT--VDPAAFSGLEDNPL 75
L L + N++R +P VF+ L +N +E+ GN + +P AF GL+ N L
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L L HNQ+R I + LP L L LD N + V PA L+
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLK 264
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL +L +LVL +N++ I + F+ L L L + NH+ + P S L
Sbjct: 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSL 125
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 16/67 (23%)
Query: 28 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWYKEW 87
LVL N L ++PP F HLP L + L NP C C L + + W
Sbjct: 35 LVLTGNNLTSVPPGAFDHLPQLRTAHLGA----------------NPWRCDCSLTYLRLW 78
Query: 88 STSLGEK 94
E+
Sbjct: 79 LEDRPER 85
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI--------HTVDPAAFSGLEDN 73
LH L L ++HN L + + L L++L+ N I H AF L +N
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 550
Query: 74 PLVCTCD----LMWYKE 86
+ C C+ L W KE
Sbjct: 551 SVACICEHQKFLQWVKE 567
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 20 GGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLV 76
G L L L +AHN + + P F++L L ++L N+I T+ L +NP V
Sbjct: 120 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 177
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 15 KVATSGGLHNLDSLV---LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
K+ S N L L+ ++ TI + + L L++L L GN I + P +FSGL
Sbjct: 40 KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 98
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI--------HTVDPAAFSGLEDN 73
LH L L ++HN L + + L L++L+ N I H AF L +N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Query: 74 PLVCTCD----LMWYKE 86
+ C C+ L W KE
Sbjct: 556 SVACICEHQKFLQWVKE 572
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 20 GGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLV 76
G L L L +AHN + + P F++L L ++L N+I T+ L +NP V
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 15 KVATSGGLHNLDSLV---LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
K+ S N L L+ ++ TI + + L L++L L GN I + P +FSGL
Sbjct: 45 KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
N+ L L HNQLR +P F L SL++ N I ++P
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 71
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
N+ L L HNQLR +P F L SL++ N I ++P
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 76
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain
Structure
Length = 680
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
N+ L L HNQLR +P F L SL++ N I ++P
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
++ G L+S+ + T+ + L L NQ+ + P VF L L L+LD N +
Sbjct: 22 VDCSGKSLASVPTGIPTTTQV-----LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 62 VDPAAFSGL 70
+ F L
Sbjct: 77 LPAGVFDKL 85
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
++ G L+S+ + T+ + L L NQ+ + P VF L L L+LD N +
Sbjct: 14 VDCSGKSLASVPTGIPTTTQV-----LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 62 VDPAAFSGL 70
+ F L
Sbjct: 69 LPAGVFDKL 77
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI---------HTVDPAAFSGL 70
L +L L ++HN ++ + L L L+ NHI H AF L
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255
Query: 71 EDNPLVCTCDLMWYKEW 87
N CTC+ + +W
Sbjct: 256 TQNDFACTCEHQSFLQW 272
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED 72
L LD+L L NQ+R I P A L L +L L NHI D A GL++
Sbjct: 153 LTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHIS--DLRALRGLKN 199
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 33/129 (25%)
Query: 12 IFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
+F+K L L L L NQL++IP VF +L L HI+ L
Sbjct: 83 VFDK------LTKLTHLALHINQLKSIPMGVFDNLKSL-------THIY---------LF 120
Query: 72 DNPLVCTC-DLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCE 130
+NP C C D+++ K W + V LG+ V + ++ P + V E
Sbjct: 121 NNPWDCECSDILYLKNWI----------VQHASIVNPLGNGGVDNVKCSGTNTPVRAVTE 170
Query: 131 GEKGGRRSP 139
+ P
Sbjct: 171 ASTSPSKCP 179
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.6 bits (65), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 23/77 (29%)
Query: 12 IFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
+F+K L L L L NQL+++P VF L L + L
Sbjct: 119 VFDK------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQ----------------YIWLH 156
Query: 72 DNPLVCTCDLMWY-KEW 87
DNP CTC + Y EW
Sbjct: 157 DNPWDCTCPGIRYLSEW 173
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 28 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDNPLVCTC 79
L L +N++ +IP V HL L L + N + +V F L DNP CTC
Sbjct: 455 LDLHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513
Query: 80 D-LMWYKEW 87
+ + EW
Sbjct: 514 PGIRYLSEW 522
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI---------HTVDPAAFSGL 70
L +L L ++HN ++ + L L L+ NHI H AF L
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550
Query: 71 EDNPLVCTCD----LMWYKEWSTSLGEKE 95
N CTC+ L W K+ L E E
Sbjct: 551 TQNDFACTCEHQSFLQWIKDQRQLLVEVE 579
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L+ +++TI + L L++L L GN I ++ AFSGL
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI---------HTVDPAAFSGL 70
L +L L ++HN ++ + L L L+ NHI H AF L
Sbjct: 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574
Query: 71 EDNPLVCTCD----LMWYKEWSTSLGEKE 95
N CTC+ L W K+ L E E
Sbjct: 575 TQNDFACTCEHQSFLQWIKDQRQLLVEVE 603
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L+ +++TI + L L++L L GN I ++ AFSGL
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Query: 30 LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS--------GLEDNPLVCTCD- 80
L+HN L +HL + L L N I+ + P L NPL CTC
Sbjct: 504 LSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSN 562
Query: 81 ---LMWYKE 86
L WYKE
Sbjct: 563 IHFLTWYKE 571
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 54 LDGNHIHTVDPAAFSGLEDNPLVCTCDLMW-----YKEWSTSLGEKEDEQMSRKRTVCTL 108
L G+ HT+ P+ G+ + + DL W + W+ E+ R + +L
Sbjct: 313 LTGDAAHTLSPSGGFGM-NTGIGSAADLGWKLAATLRGWAGPGLLATYEEERRPVAITSL 371
Query: 109 GSSNVHQREIKLSDLPKQLVCEGEKGGR 136
+NV+ R +LP L +G +G R
Sbjct: 372 EEANVNLRRTMDRELPPGLHDDGPRGER 399
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 17/76 (22%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GL +L L L NQL+++P +F L L + L HT NP C+C
Sbjct: 321 GLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWL-----HT-----------NPWDCSCP 364
Query: 81 LMWY-KEWSTSLGEKE 95
+ Y W +KE
Sbjct: 365 RIDYLSRWLNKNSQKE 380
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 17/67 (25%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC-D 80
L +L L L NQL++IP F L L L G NP C C D
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG----------------NPWDCECRD 177
Query: 81 LMWYKEW 87
+M+ + W
Sbjct: 178 IMYLRNW 184
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L NLD L L NQL+ I A L L L+L N I + P SGL
Sbjct: 214 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 260
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLED 72
L NL+SL+ +NQ+ I P L L+ L L+GN + + A+ + L D
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTD 243
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L NLD L L NQL+ I A L L L+L N I + P SGL
Sbjct: 214 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 260
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLED 72
L NL+SL+ +NQ+ I P L L+ L L+GN + + A+ + L D
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTD 243
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L NLD L L NQL+ I A L L L+L N I + P SGL
Sbjct: 214 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 260
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLED 72
L NL+SL+ +NQ+ I P L L+ L L+GN + + A+ + L D
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTD 243
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L NLD L L NQL+ I A L L L+L N I + P SGL
Sbjct: 217 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 263
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLED 72
L NL+SL+ +NQ+ I P L L+ L L+GN + + A+ + L D
Sbjct: 197 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTD 246
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L NLD L L NQL+ I A L L L+L N I + P SGL
Sbjct: 218 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 264
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLED 72
L NL+SL+ +NQ+ I P L L+ L L+GN + + A+ + L D
Sbjct: 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTD 247
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L NLD L L NQL+ I A L L L+L N I + P SGL
Sbjct: 213 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 259
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLED 72
L NL+SL+ +NQ+ I P L L+ L L+GN + + A+ + L D
Sbjct: 193 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTD 242
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVF--AHLPLLNSLELDGNHIHTVDPAAFSGLEDNPL 75
G +++L AHN+L+ I P +F + + ++++ N I +VD F L+ P
Sbjct: 374 GFTEQVENLSFAHNKLKYI-PNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPF 430
Score = 27.3 bits (59), Expect = 4.1, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDN 73
N+ S+ L++NQ+ P +F+ L+S+ L GN + + + +N
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENEN 483
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L NLD L L NQL+ I A L L L+L N I + P SGL
Sbjct: 213 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 259
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLED 72
L NL+SL+ +NQ+ I P L L+ L L+GN + + A+ + L D
Sbjct: 193 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTD 242
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer
Protein
Length = 90
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 55
G+HNL+ + R+IPP+ +LP SL +D
Sbjct: 57 GIHNLN-----EDNARSIPPKCGVNLPYTISLNID 86
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 55
G+HNL+ + R+IPP+ +LP SL +D
Sbjct: 57 GIHNLN-----EDNARSIPPKCGVNLPYTISLNID 86
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 28 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 66
L L+HN+LR +PP A L L L+ N + VD A
Sbjct: 468 LDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVA 505
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 2 IEIWGGQLSSIFEKVATSGG-LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE 53
+EIWGG+ I KV GG + ++ + H + +P +V A + L +L+
Sbjct: 306 LEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVPYKVPAGVSLARNLK 358
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 28 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 66
L L+HN+LR +PP A L L L+ N + VD A
Sbjct: 468 LDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVA 505
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 26.9 bits (58), Expect = 4.9, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 54 LDGNHIHTVDPAAFSGLEDNPLVCTCDLMW-----YKEWSTSLGEKEDEQMSRKRTVCTL 108
L G+ HT+ P+ G+ + + DL W + W+ E+ R + +L
Sbjct: 313 LTGDAAHTLSPSGGFGM-NTGIGSAADLGWKLAATLRGWAGPGLLATYEEERRPVAITSL 371
Query: 109 GSSNVHQREIKLSDLPKQLVCEGEKGGRRSPNSAPSASLSGS 150
+NV+ R +LP L +G +G R A SG+
Sbjct: 372 EEANVNLRRTMDRELPPGLHDDGPRGERIRAAVAEKLERSGA 413
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 10 SSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 66
S+ ++ L L+SL L +NQL V L L +L L NHI + P A
Sbjct: 274 SNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLA 330
>pdb|3VUV|A Chain A, Crystal Structure Of The Merozoite Surface Protein Mspdbl2
From P. Falciparum Bound To Zinc
Length = 339
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 65 AAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVC 106
+ ++D P L W++EW T + E+ ++ M+ + VC
Sbjct: 214 TGYGNIDDIPQF----LRWFREWGTYVCEESEKNMNTLKAVC 251
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L+ +++TI + L L++L L GN I ++ AFSGL
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99
>pdb|3VUU|A Chain A, Crystal Structure Of The Merozoite Surface Protein Mspdbl2
From P. Falciparum
Length = 305
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 65 AAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVC 106
+ ++D P L W++EW T + E+ ++ M+ + VC
Sbjct: 180 TGYGNIDDIPQF----LRWFREWGTYVCEESEKNMNTLKAVC 217
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L+ +++TI + L L++L L GN I ++ AFSGL
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 101
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L+ +++TI + L L++L L GN I ++ AFSGL
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 100
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L+ +++TI + L L++L L GN I ++ AFSGL
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 100
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L+ +++TI + L L++L L GN I ++ AFSGL
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 101
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 25 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L+ +++TI + L L++L L GN I ++ AFSGL
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
NL L+L +++ TI F L L L+L NH+ ++ + F L
Sbjct: 77 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,053,816
Number of Sequences: 62578
Number of extensions: 195587
Number of successful extensions: 578
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 228
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)