Query psy10386
Match_columns 166
No_of_seqs 210 out of 2281
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 16:30:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4237|consensus 99.8 1.8E-21 4E-26 149.3 4.9 124 1-136 278-410 (498)
2 KOG4194|consensus 99.7 6.9E-18 1.5E-22 135.4 5.2 123 1-131 369-500 (873)
3 KOG4237|consensus 99.6 2.2E-16 4.8E-21 121.6 -1.1 118 2-130 72-247 (498)
4 PF13855 LRR_8: Leucine rich r 99.4 8.4E-13 1.8E-17 77.7 3.7 57 1-59 5-61 (61)
5 TIGR00864 PCC polycystin catio 99.2 8.6E-12 1.9E-16 114.0 5.7 84 29-134 1-85 (2740)
6 PF13855 LRR_8: Leucine rich r 98.9 7.6E-10 1.7E-14 64.9 3.1 49 23-71 1-49 (61)
7 smart00082 LRRCT Leucine rich 98.7 5.4E-09 1.2E-13 59.0 2.2 49 73-129 1-50 (51)
8 PLN00113 leucine-rich repeat r 98.7 2.3E-08 4.9E-13 87.6 6.6 68 2-71 480-547 (968)
9 PLN03150 hypothetical protein; 98.7 7.3E-08 1.6E-12 80.9 8.0 74 2-77 423-504 (623)
10 PLN00113 leucine-rich repeat r 98.6 1.9E-07 4.1E-12 81.9 8.4 76 2-79 504-587 (968)
11 PF12799 LRR_4: Leucine Rich r 98.6 5.9E-08 1.3E-12 53.1 3.2 41 23-64 1-41 (44)
12 KOG4194|consensus 98.6 2.6E-08 5.6E-13 81.2 2.2 68 2-71 178-245 (873)
13 PF14580 LRR_9: Leucine-rich r 98.5 8.8E-08 1.9E-12 67.9 3.6 59 2-64 47-105 (175)
14 PLN03150 hypothetical protein; 98.5 1.4E-07 3E-12 79.2 4.8 64 2-67 447-510 (623)
15 KOG0444|consensus 98.1 4.5E-07 9.9E-12 74.9 -0.5 63 1-66 107-169 (1255)
16 PF12799 LRR_4: Leucine Rich r 98.1 2.1E-06 4.6E-11 46.8 2.0 37 1-40 5-41 (44)
17 PF14580 LRR_9: Leucine-rich r 98.0 3.1E-06 6.6E-11 60.0 2.7 59 2-65 24-82 (175)
18 KOG0617|consensus 98.0 1.3E-06 2.8E-11 61.6 -0.1 60 2-65 38-97 (264)
19 KOG0617|consensus 98.0 1.4E-06 3E-11 61.4 -0.4 63 1-67 60-124 (264)
20 KOG0444|consensus 97.9 9.8E-07 2.1E-11 73.0 -1.7 60 1-63 130-189 (1255)
21 KOG1259|consensus 97.8 7.5E-06 1.6E-10 62.4 0.9 58 2-64 289-346 (490)
22 KOG1644|consensus 97.7 2E-05 4.4E-10 56.7 2.6 58 2-63 47-104 (233)
23 KOG0618|consensus 97.6 8.7E-06 1.9E-10 69.6 -1.3 59 3-63 365-423 (1081)
24 KOG0472|consensus 97.6 3.2E-05 7E-10 61.0 1.4 52 6-60 490-541 (565)
25 KOG0618|consensus 97.5 5.6E-06 1.2E-10 70.8 -3.1 60 1-62 387-467 (1081)
26 KOG0472|consensus 97.5 1.5E-05 3.3E-10 62.8 -1.0 85 2-90 233-330 (565)
27 KOG1859|consensus 97.4 3.2E-05 6.9E-10 65.1 0.0 56 2-62 192-247 (1096)
28 KOG4579|consensus 97.3 2.6E-05 5.6E-10 53.0 -1.6 60 2-64 58-117 (177)
29 KOG1259|consensus 97.1 0.00013 2.8E-09 55.8 0.6 56 1-61 311-366 (490)
30 KOG4579|consensus 97.1 3.3E-05 7.2E-10 52.5 -2.4 75 2-80 82-163 (177)
31 PRK15387 E3 ubiquitin-protein 97.1 0.00014 3E-09 62.5 0.7 65 2-77 387-459 (788)
32 PF00560 LRR_1: Leucine Rich R 97.1 0.00017 3.7E-09 33.1 0.7 17 25-41 2-18 (22)
33 PRK15370 E3 ubiquitin-protein 97.1 0.00056 1.2E-08 58.8 4.1 65 2-71 204-286 (754)
34 smart00370 LRR Leucine-rich re 97.1 0.00038 8.1E-09 33.2 1.7 22 23-44 2-23 (26)
35 smart00369 LRR_TYP Leucine-ric 97.1 0.00038 8.1E-09 33.2 1.7 22 23-44 2-23 (26)
36 PF00560 LRR_1: Leucine Rich R 96.9 0.00047 1E-08 31.6 1.2 22 48-70 1-22 (22)
37 PRK15370 E3 ubiquitin-protein 96.9 0.0012 2.5E-08 56.9 4.5 58 2-67 246-303 (754)
38 KOG0531|consensus 96.9 0.00041 8.9E-09 55.7 1.4 58 2-64 100-157 (414)
39 PRK15387 E3 ubiquitin-protein 96.8 0.0015 3.2E-08 56.3 4.4 53 2-63 206-258 (788)
40 smart00370 LRR Leucine-rich re 96.8 0.00096 2.1E-08 31.8 1.8 23 46-68 1-23 (26)
41 smart00369 LRR_TYP Leucine-ric 96.8 0.00096 2.1E-08 31.8 1.8 23 46-68 1-23 (26)
42 KOG0531|consensus 96.4 0.0013 2.9E-08 52.8 1.3 58 1-64 122-179 (414)
43 KOG1644|consensus 96.4 0.003 6.5E-08 45.7 2.9 62 1-64 68-130 (233)
44 PF13504 LRR_7: Leucine rich r 96.4 0.0021 4.4E-08 27.5 1.3 15 24-38 2-16 (17)
45 COG4886 Leucine-rich repeat (L 96.4 0.0012 2.6E-08 52.4 0.7 60 2-65 145-204 (394)
46 PF13504 LRR_7: Leucine rich r 96.1 0.0043 9.4E-08 26.5 1.4 17 47-63 1-17 (17)
47 KOG1859|consensus 96.0 0.00047 1E-08 58.4 -3.3 62 3-69 170-231 (1096)
48 COG4886 Leucine-rich repeat (L 95.9 0.0035 7.5E-08 49.8 1.5 60 2-65 121-181 (394)
49 PF13306 LRR_5: Leucine rich r 95.7 0.023 5E-07 37.5 4.5 56 8-67 22-77 (129)
50 PF13306 LRR_5: Leucine rich r 95.7 0.021 4.5E-07 37.7 4.3 63 2-69 40-102 (129)
51 KOG0532|consensus 95.4 0.0019 4.1E-08 53.3 -2.0 70 2-76 148-247 (722)
52 KOG0532|consensus 94.9 0.0057 1.2E-07 50.6 -0.5 57 4-65 105-161 (722)
53 cd00116 LRR_RI Leucine-rich re 94.4 0.016 3.4E-07 44.3 0.8 38 23-60 137-178 (319)
54 cd00116 LRR_RI Leucine-rich re 94.2 0.013 2.8E-07 44.8 -0.0 57 2-60 86-150 (319)
55 KOG2739|consensus 94.1 0.035 7.6E-07 41.6 2.1 43 18-61 60-105 (260)
56 smart00365 LRR_SD22 Leucine-ri 93.8 0.047 1E-06 26.0 1.5 17 23-39 2-18 (26)
57 PLN03210 Resistant to P. syrin 93.8 0.11 2.4E-06 47.2 5.0 51 2-57 616-667 (1153)
58 KOG2123|consensus 93.7 0.0048 1.1E-07 46.9 -3.1 54 2-59 46-100 (388)
59 KOG4658|consensus 93.4 0.023 5E-07 50.0 0.0 53 2-58 576-629 (889)
60 KOG4658|consensus 93.1 0.04 8.8E-07 48.5 1.0 60 3-65 551-613 (889)
61 PLN03210 Resistant to P. syrin 92.9 0.19 4.2E-06 45.7 5.2 52 2-57 783-835 (1153)
62 PF01463 LRRCT: Leucine rich r 92.7 0.048 1E-06 25.6 0.6 23 104-130 2-25 (25)
63 KOG2123|consensus 91.8 0.0088 1.9E-07 45.6 -3.9 64 2-71 24-88 (388)
64 KOG3207|consensus 91.6 0.15 3.2E-06 41.2 2.5 59 2-61 251-315 (505)
65 KOG0473|consensus 91.0 0.0033 7.1E-08 46.7 -6.7 57 2-62 47-103 (326)
66 smart00364 LRR_BAC Leucine-ric 90.9 0.16 3.5E-06 24.2 1.3 18 47-64 2-19 (26)
67 KOG3207|consensus 90.0 0.095 2.1E-06 42.3 0.1 44 19-62 242-286 (505)
68 KOG0473|consensus 88.7 0.033 7.2E-07 41.5 -3.1 55 2-60 70-124 (326)
69 KOG2982|consensus 88.7 0.17 3.8E-06 39.1 0.7 35 25-59 73-109 (418)
70 KOG2739|consensus 88.7 0.27 5.8E-06 36.9 1.6 59 2-63 70-132 (260)
71 TIGR00864 PCC polycystin catio 85.5 0.4 8.7E-06 46.7 1.3 32 3-36 1-32 (2740)
72 PF13516 LRR_6: Leucine Rich r 84.8 0.66 1.4E-05 21.1 1.3 15 47-61 2-16 (24)
73 smart00368 LRR_RI Leucine rich 84.5 0.73 1.6E-05 22.1 1.4 13 24-36 3-15 (28)
74 KOG3763|consensus 81.7 0.5 1.1E-05 39.3 0.3 37 21-57 216-254 (585)
75 PRK15386 type III secretion pr 81.6 2.1 4.5E-05 34.8 3.6 54 2-64 57-112 (426)
76 KOG2982|consensus 78.2 1.3 2.9E-05 34.4 1.5 58 2-59 76-133 (418)
77 KOG3763|consensus 71.5 2.6 5.6E-05 35.2 1.7 59 2-61 223-284 (585)
78 COG5238 RNA1 Ran GTPase-activa 66.8 5.1 0.00011 31.0 2.3 46 19-64 88-137 (388)
79 PF06084 Cytomega_TRL10: Cytom 61.3 6.4 0.00014 25.8 1.7 32 135-166 49-80 (150)
80 KOG1909|consensus 55.2 4.5 9.8E-05 32.0 0.3 44 18-61 180-227 (382)
81 KOG1909|consensus 54.0 6.3 0.00014 31.2 0.9 57 3-61 191-255 (382)
82 KOG3665|consensus 48.4 6.4 0.00014 34.2 0.2 42 21-62 146-188 (699)
83 PRK15386 type III secretion pr 46.1 21 0.00046 29.1 2.8 40 21-64 50-90 (426)
84 KOG1026|consensus 46.0 18 0.0004 31.7 2.5 71 21-91 83-163 (774)
85 KOG3665|consensus 41.8 20 0.00043 31.3 2.1 40 19-60 169-208 (699)
86 KOG3864|consensus 39.4 5.2 0.00011 29.3 -1.4 13 46-58 150-162 (221)
87 PF14991 MLANA: Protein melan- 23.3 23 0.00049 23.3 -0.3 22 144-165 25-46 (118)
88 PF05725 FNIP: FNIP Repeat; I 22.8 1.3E+02 0.0028 15.6 2.8 31 23-55 12-42 (44)
89 smart00367 LRR_CC Leucine-rich 20.8 75 0.0016 14.3 1.3 12 47-58 2-13 (26)
No 1
>KOG4237|consensus
Probab=99.84 E-value=1.8e-21 Score=149.33 Aligned_cols=124 Identities=28% Similarity=0.483 Sum_probs=112.6
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------C
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~ 72 (166)
.|+|++|+|+.+.++ +|.++..+++|+|..|+|..+...+|.++..|+.|+|.+|+|+.+.+.+|+.+. .
T Consensus 278 ~lnlsnN~i~~i~~~--aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 278 KLNLSNNKITRIEDG--AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred EeccCCCccchhhhh--hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 378999999999999 999999999999999999999999999999999999999999999999999988 8
Q ss_pred CCccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCCCCC
Q psy10386 73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEKGGR 136 (166)
Q Consensus 73 Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~~~~ 136 (166)
|||.|+|.+.|+.+|+++... .....|..|.. +++.+++++.. ++.|..+....
T Consensus 356 Np~~CnC~l~wl~~Wlr~~~~-------~~~~~Cq~p~~---~~~~~~~dv~~~~~~c~~~ee~~ 410 (498)
T KOG4237|consen 356 NPFNCNCRLAWLGEWLRKKSV-------VGNPRCQSPGF---VRQIPISDVAFGDFRCGGPEELG 410 (498)
T ss_pred CcccCccchHHHHHHHhhCCC-------CCCCCCCCCch---hccccchhccccccccCCccccC
Confidence 999999999999999998651 35589999999 99999999987 77887554433
No 2
>KOG4194|consensus
Probab=99.71 E-value=6.9e-18 Score=135.41 Aligned_cols=123 Identities=27% Similarity=0.550 Sum_probs=105.1
Q ss_pred CEEecCCCCceee-CCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-------C
Q psy10386 1 MIEIWGGQLSSIF-EKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------D 72 (166)
Q Consensus 1 ~L~ls~N~l~~~~-~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-------~ 72 (166)
.|||++|.|++.. +..+.|.||++|+.|++.+|+|+.|+..+|.++.+|++|||.+|.|.+|.+++|+.+. .
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcc
Confidence 3788888888753 2222688999999999999999999999999999999999999999999999999887 5
Q ss_pred CCccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCC
Q psy10386 73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEG 131 (166)
Q Consensus 73 Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~ 131 (166)
-.+.|||.+.|+..|+.....+. .-...|+.|.. +.|+.+..++. ++.|.+
T Consensus 449 ssflCDCql~Wl~qWl~~~~lq~-----sv~a~CayPe~---Lad~~i~svd~~~lvC~D 500 (873)
T KOG4194|consen 449 SSFLCDCQLKWLAQWLYRRKLQS-----SVIAKCAYPEP---LADQSIVSVDTANLVCDD 500 (873)
T ss_pred cceEEeccHHHHHHHHHhccccc-----ceeeeccCCcc---cccceeEeechhhceecC
Confidence 67899999999999999865442 23489999999 99999999999 899974
No 3
>KOG4237|consensus
Probab=99.56 E-value=2.2e-16 Score=121.62 Aligned_cols=118 Identities=29% Similarity=0.438 Sum_probs=98.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccC-CcccccCccccCCCC---------
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG-NHIHTVDPAAFSGLE--------- 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~-N~l~~~~~~~~~~l~--------- 71 (166)
++|..|+|+.+|++ +|+.+++|+.||||+|+|+.|.+++|++++++..|-+-+ |+|+.++.++|.++.
T Consensus 72 irLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 72 IRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred EEeccCCcccCChh--hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 68999999999999 999999999999999999999999999999887765555 999999999999998
Q ss_pred -----------------------------------------------CCCccccCCcHHHHHHHHhccCCcchhcccCCc
Q psy10386 72 -----------------------------------------------DNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRT 104 (166)
Q Consensus 72 -----------------------------------------------~Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~ 104 (166)
.||+.|+|.+.|+.+.+..+.-. -.-.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie------tsga 223 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE------TSGA 223 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh------cccc
Confidence 79999999999999987764322 2336
Q ss_pred eecCCCCCCcccCccccCCCC-cccCC
Q psy10386 105 VCTLGSSNVHQREIKLSDLPK-QLVCE 130 (166)
Q Consensus 105 ~C~~p~~~~~~~~~~l~~~~~-~~~C~ 130 (166)
.|..|.. +....+..++. .+.|.
T Consensus 224 rc~~p~r---l~~~Ri~q~~a~kf~c~ 247 (498)
T KOG4237|consen 224 RCVSPYR---LYYKRINQEDARKFLCS 247 (498)
T ss_pred eecchHH---HHHHHhcccchhhhhhh
Confidence 7777766 66666666655 44443
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.35 E-value=8.4e-13 Score=77.69 Aligned_cols=57 Identities=33% Similarity=0.598 Sum_probs=54.6
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l 59 (166)
.|++++|+++.++++ .|.++++|+.|++++|+++.+++++|.++++|+++++++|+|
T Consensus 5 ~L~l~~n~l~~i~~~--~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 5 SLDLSNNKLTEIPPD--SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp EEEETSSTESEECTT--TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred EEECCCCCCCccCHH--HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 378999999999999 999999999999999999999999999999999999999986
No 5
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.24 E-value=8.6e-12 Score=114.03 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=71.8
Q ss_pred eccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCCCCCccccCCcHHHHHHHHhccCCcchhcccCCceecC
Q psy10386 29 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTL 108 (166)
Q Consensus 29 ~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~~Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~ 108 (166)
||++|+|+.++++.|..+++|+.|+|+ +|||+|||++.||..|++..... +.....+.|..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLs----------------gNPw~CDC~L~WL~~WL~~~~v~---v~~~~~i~Cas 61 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLS----------------GNPFECDCGLARLPRWAEEKGVK---VRQPEAALCAG 61 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEee----------------CCccccccccHHHHHHHHhcCcc---ccCCcccCCCC
Confidence 689999999999999999999999997 78999999999999999985432 22345789999
Q ss_pred CCCCCcccCccccCCCC-cccCCCCCC
Q psy10386 109 GSSNVHQREIKLSDLPK-QLVCEGEKG 134 (166)
Q Consensus 109 p~~~~~~~~~~l~~~~~-~~~C~~~~~ 134 (166)
|.. ++|+++.+++. ++.|..+..
T Consensus 62 P~~---LrG~~L~~l~~~d~~C~~~y~ 85 (2740)
T TIGR00864 62 PGA---LAGQPLLGIPLLDSGCDEEYV 85 (2740)
T ss_pred ChH---HCCCCcccCCcccCCCCCcce
Confidence 999 99999999987 778876553
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=7.6e-10 Score=64.93 Aligned_cols=49 Identities=45% Similarity=0.789 Sum_probs=46.7
Q ss_pred ccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
++|+.|++++|+++.+++++|.++++|++|++++|.++.+++++|.+++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~ 49 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP 49 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTST
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC
Confidence 5789999999999999999999999999999999999999999999876
No 7
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=98.75 E-value=5.4e-09 Score=58.99 Aligned_cols=49 Identities=29% Similarity=0.613 Sum_probs=37.0
Q ss_pred CCccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccC
Q psy10386 73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVC 129 (166)
Q Consensus 73 Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C 129 (166)
|||.|||++.||..|+++.. . +.....+.|..|.. ++ .++.++.. ++.|
T Consensus 1 NP~~CdC~l~~~~~w~~~~~-~---~~~~~~~~C~~P~~---~~-~~l~~~~~~~~~C 50 (51)
T smart00082 1 NPFICDCELRWLLRWLQANE-H---LQDPVSLRCASPSS---LR-GPLLELLHSEFKC 50 (51)
T ss_pred CCccCcCCchHHHHHHHhCC-c---cCCCCCCEeCCcHH---HH-hHHHcCCHhhCCC
Confidence 89999999999999998821 1 12245799999988 77 55777665 5566
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.73 E-value=2.3e-08 Score=87.57 Aligned_cols=68 Identities=28% Similarity=0.371 Sum_probs=41.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|++++..+. .|.++++|+.|++++|+++...|..|..+++|+.|++++|.+++..+..|..++
T Consensus 480 L~ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 480 LDLSRNQFSGAVPR--KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred EECcCCccCCccCh--hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc
Confidence 55666666655555 566666666666666666655555566666666666666666655555555444
No 9
>PLN03150 hypothetical protein; Provisional
Probab=98.68 E-value=7.3e-08 Score=80.87 Aligned_cols=74 Identities=22% Similarity=0.287 Sum_probs=61.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|+|++|.+++..+. .+..+++|+.|+|++|+++...|..+..+++|+.|++++|++++..+..+..+. +|
T Consensus 423 L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 423 LGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EECCCCCccccCCH--HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 68899999987777 899999999999999999876676788999999999999999876666665554 66
Q ss_pred Cccc
Q psy10386 74 PLVC 77 (166)
Q Consensus 74 p~~C 77 (166)
.+.+
T Consensus 501 ~l~g 504 (623)
T PLN03150 501 SLSG 504 (623)
T ss_pred cccc
Confidence 6654
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.59 E-value=1.9e-07 Score=81.89 Aligned_cols=76 Identities=28% Similarity=0.392 Sum_probs=66.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|++++..|. .|.++++|+.|++++|.++...+..|..+++|+.|++++|++.+..+..+..+. +|
T Consensus 504 L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 504 LKLSENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred EECcCCcceeeCCh--HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 78999999988888 899999999999999999999898999999999999999999876666555544 78
Q ss_pred CccccC
Q psy10386 74 PLVCTC 79 (166)
Q Consensus 74 p~~C~C 79 (166)
++.+..
T Consensus 582 ~l~~~~ 587 (968)
T PLN00113 582 HLHGSL 587 (968)
T ss_pred cceeeC
Confidence 877644
No 11
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.59 E-value=5.9e-08 Score=53.05 Aligned_cols=41 Identities=39% Similarity=0.756 Sum_probs=34.0
Q ss_pred ccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
++|++|++++|+|+.+++. ++.+++|+.|++++|+++.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCcC
Confidence 4789999999999999774 7899999999999999988754
No 12
>KOG4194|consensus
Probab=98.57 E-value=2.6e-08 Score=81.19 Aligned_cols=68 Identities=31% Similarity=0.546 Sum_probs=36.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|+|++|+|+.+..+ .|.++.+|..|.|+.|+++.+|+..|+.+++|+.|+|..|+|.-+..-+|++++
T Consensus 178 L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~ 245 (873)
T KOG4194|consen 178 LNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP 245 (873)
T ss_pred Eeeccccccccccc--cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCch
Confidence 44555555555555 555555555555555555555555555555555555555555555444555444
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.52 E-value=8.8e-08 Score=67.86 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=21.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|++++|.|+.+.. +.+++.|+.|++++|+|+.+.+.....+++|+.|++++|++..+..
T Consensus 47 L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~ 105 (175)
T PF14580_consen 47 LDLSNNQITKLEG----LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNE 105 (175)
T ss_dssp EE-TTS--S--TT--------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCC
T ss_pred EECCCCCCccccC----ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHH
Confidence 5677777776652 4566777777777777777754433346677777777777765543
No 14
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=1.4e-07 Score=79.23 Aligned_cols=64 Identities=27% Similarity=0.415 Sum_probs=56.7
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~ 67 (166)
|+|++|.+++..|. .+..+++|+.|+|++|+++...|..+..+++|+.|++++|++++..|..+
T Consensus 447 L~Ls~N~l~g~iP~--~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 447 INLSGNSIRGNIPP--SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred EECCCCcccCcCCh--HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 78999999977777 79999999999999999998878889999999999999999986555444
No 15
>KOG0444|consensus
Probab=98.11 E-value=4.5e-07 Score=74.93 Aligned_cols=63 Identities=25% Similarity=0.328 Sum_probs=43.3
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 66 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~ 66 (166)
+||||+|++++.|.+ +....++-.|+||+|+|.+||...|.++..|.+|||++|++..+||..
T Consensus 107 ~lDLShNqL~EvP~~---LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTN---LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI 169 (1255)
T ss_pred eeecchhhhhhcchh---hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence 366777777777664 455666667777777777777777777777777777777777776653
No 16
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=2.1e-06 Score=46.81 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=32.0
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP 40 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~ 40 (166)
.|++++|+|+.+++ .+..+++|+.|++++|+++.+++
T Consensus 5 ~L~l~~N~i~~l~~---~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 5 ELDLSNNQITDLPP---ELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp EEEETSSS-SSHGG---HGTTCTTSSEEEETSSCCSBEGG
T ss_pred EEEccCCCCcccCc---hHhCCCCCCEEEecCCCCCCCcC
Confidence 38999999999987 48899999999999999998754
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.05 E-value=3.1e-06 Score=60.04 Aligned_cols=59 Identities=29% Similarity=0.506 Sum_probs=20.9
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~ 65 (166)
|+|.+|+|+.+..- -..+.+|+.|++++|.|+.++. +..++.|+.|++++|+|+++.+.
T Consensus 24 L~L~~n~I~~Ie~L---~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 24 LNLRGNQISTIENL---GATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp ------------S-----TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHH
T ss_pred ccccccccccccch---hhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccc
Confidence 78999999998743 1257899999999999999975 78899999999999999998753
No 18
>KOG0617|consensus
Probab=97.99 E-value=1.3e-06 Score=61.58 Aligned_cols=60 Identities=23% Similarity=0.404 Sum_probs=45.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~ 65 (166)
|-+|+|+++.++|+ ...+.+|+.|++++|+++.+|.. .+.+++|++|++..|++..++.+
T Consensus 38 LtLSHNKl~~vppn---ia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPN---IAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred hhcccCceeecCCc---HHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccc
Confidence 56788888888886 45778888888888888888765 46777888888888877766553
No 19
>KOG0617|consensus
Probab=97.96 E-value=1.4e-06 Score=61.42 Aligned_cols=63 Identities=22% Similarity=0.411 Sum_probs=53.6
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccc--ccCcccc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH--TVDPAAF 67 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~--~~~~~~~ 67 (166)
+|++++|+|+.+|. +.+.++.|+.|+++.|++..+|.+ |+.++.|+.||+..|.++ +++.+.|
T Consensus 60 vln~~nnqie~lp~---~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 60 VLNLSNNQIEELPT---SISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred hhhcccchhhhcCh---hhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccccccccCCcchh
Confidence 47899999999998 477999999999999999988766 899999999999999985 3444433
No 20
>KOG0444|consensus
Probab=97.94 E-value=9.8e-07 Score=73.04 Aligned_cols=60 Identities=23% Similarity=0.392 Sum_probs=54.5
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~ 63 (166)
+|+||+|+|..+|.. .|.++..|-.||||+|++..+||. .+.+..|+.|.|++|++....
T Consensus 130 VLNLS~N~IetIPn~--lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNS--LFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred EEEcccCccccCCch--HHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHH
Confidence 489999999999998 999999999999999999999998 468999999999999875543
No 21
>KOG1259|consensus
Probab=97.78 E-value=7.5e-06 Score=62.44 Aligned_cols=58 Identities=29% Similarity=0.462 Sum_probs=50.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
+|||+|.|+.+.. +..-++.++.|++|+|.|..+.. ++.+++|+.|||++|.++.+..
T Consensus 289 lDLS~N~I~~iDE---SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G 346 (490)
T KOG1259|consen 289 LDLSGNLITQIDE---SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG 346 (490)
T ss_pred ccccccchhhhhh---hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh
Confidence 7899999999886 45677899999999999999977 6789999999999999988754
No 22
>KOG1644|consensus
Probab=97.75 E-value=2e-05 Score=56.65 Aligned_cols=58 Identities=28% Similarity=0.415 Sum_probs=50.6
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~ 63 (166)
+||++|.+..++ .|.+++.|.+|.+++|+|+.|.+..-.-+++|+.|.|.+|.|..+.
T Consensus 47 iDLtdNdl~~l~----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 47 IDLTDNDLRKLD----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG 104 (233)
T ss_pred ecccccchhhcc----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh
Confidence 688999988776 4789999999999999999999987767889999999999987653
No 23
>KOG0618|consensus
Probab=97.59 E-value=8.7e-06 Score=69.64 Aligned_cols=59 Identities=24% Similarity=0.323 Sum_probs=31.8
Q ss_pred EecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386 3 EIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 3 ~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~ 63 (166)
.+.+|+++.-.-. .+.+...|+.|+|++|+|+.+|...+..+..|+.|+|++|+|++++
T Consensus 365 ylanN~Ltd~c~p--~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 365 YLANNHLTDSCFP--VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred HHhcCcccccchh--hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh
Confidence 3445555543322 4555555555555555555555555555555555555555555554
No 24
>KOG0472|consensus
Probab=97.55 E-value=3.2e-05 Score=61.02 Aligned_cols=52 Identities=35% Similarity=0.539 Sum_probs=29.4
Q ss_pred CCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccc
Q psy10386 6 GGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60 (166)
Q Consensus 6 ~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~ 60 (166)
+|++..+++. -..++.+|.+|||.+|.++.+||. ++.+.+|++|++.+|+++
T Consensus 490 ~nqi~~vd~~--~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 490 NNQIGSVDPS--GLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccccChH--HhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC
Confidence 3555555554 455555556666666666655555 455555666666655555
No 25
>KOG0618|consensus
Probab=97.54 E-value=5.6e-06 Score=70.78 Aligned_cols=60 Identities=30% Similarity=0.439 Sum_probs=50.4
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCcc---------------------ccCCCCCCCEEeccCCcc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPR---------------------VFAHLPLLNSLELDGNHI 59 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~---------------------~f~~l~~L~~l~l~~N~l 59 (166)
+|+|++|+++.+|.. .+.+++.|++|+||+|+++.++.. .+..++.|+.+|++.|.|
T Consensus 387 VLhLsyNrL~~fpas--~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 387 VLHLSYNRLNSFPAS--KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred eeeecccccccCCHH--HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchh
Confidence 589999999999998 899999999999999999888643 144577888888888888
Q ss_pred ccc
Q psy10386 60 HTV 62 (166)
Q Consensus 60 ~~~ 62 (166)
+.+
T Consensus 465 ~~~ 467 (1081)
T KOG0618|consen 465 SEV 467 (1081)
T ss_pred hhh
Confidence 653
No 26
>KOG0472|consensus
Probab=97.50 E-value=1.5e-05 Score=62.82 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=57.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-------CCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------DNP 74 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-------~Np 74 (166)
|+++.|+|..++.. ...+++++..|||.+|++++.|.+.. -+++|..||+++|.+++++.. +..+. |||
T Consensus 233 lh~g~N~i~~lpae--~~~~L~~l~vLDLRdNklke~Pde~c-lLrsL~rLDlSNN~is~Lp~s-LgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 233 LHVGENQIEMLPAE--HLKHLNSLLVLDLRDNKLKEVPDEIC-LLRSLERLDLSNNDISSLPYS-LGNLHLKFLALEGNP 308 (565)
T ss_pred HHhcccHHHhhHHH--HhcccccceeeeccccccccCchHHH-HhhhhhhhcccCCccccCCcc-cccceeeehhhcCCc
Confidence 45566777777776 66677788888888888888877754 567788888888888877653 22222 888
Q ss_pred cc------ccCCcHHHHHHHHh
Q psy10386 75 LV------CTCDLMWYKEWSTS 90 (166)
Q Consensus 75 ~~------C~C~l~~l~~~~~~ 90 (166)
+. -+|....+..++++
T Consensus 309 lrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 309 LRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred hHHHHHHHHcccHHHHHHHHHH
Confidence 73 23555666666665
No 27
>KOG1859|consensus
Probab=97.43 E-value=3.2e-05 Score=65.11 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=37.6
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 62 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~ 62 (166)
|+|++|+++.+. .+..++.|++|||++|.++.++.-...+. +|+.|.+++|.++++
T Consensus 192 LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 192 LNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL 247 (1096)
T ss_pred hccchhhhhhhH----HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh
Confidence 678888888776 35678888888888888887765322222 366666666655443
No 28
>KOG4579|consensus
Probab=97.29 E-value=2.6e-05 Score=53.05 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=38.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
.+|++|.+...++. .-...+.++.+++++|.|+.+|.. +..++.|+.++++.|++...+.
T Consensus 58 i~ls~N~fk~fp~k--ft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~ 117 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKK--FTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPR 117 (177)
T ss_pred EecccchhhhCCHH--HhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchH
Confidence 35666766666664 333344666777777777777666 6666777777777777665544
No 29
>KOG1259|consensus
Probab=97.14 E-value=0.00013 Score=55.85 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=40.0
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~ 61 (166)
.|++|+|+|..+.. +..+++|+.||||+|.++.+.... ..+.+.+.|.|++|.+.+
T Consensus 311 ~L~lS~N~i~~v~n----La~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 311 RLILSQNRIRTVQN----LAELPQLQLLDLSGNLLAECVGWH-LKLGNIKTLKLAQNKIET 366 (490)
T ss_pred EEeccccceeeehh----hhhcccceEeecccchhHhhhhhH-hhhcCEeeeehhhhhHhh
Confidence 37899999998875 457899999999999998876543 244455555555554433
No 30
>KOG4579|consensus
Probab=97.14 E-value=3.3e-05 Score=52.55 Aligned_cols=75 Identities=23% Similarity=0.253 Sum_probs=62.6
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-------CCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------DNP 74 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-------~Np 74 (166)
|++++|.|+.+|.+ |..++.|+.|+++.|.+...+.-.+ .+.++-.|+..+|.+..|+-+.|..-. ++|
T Consensus 82 lNl~~neisdvPeE---~Aam~aLr~lNl~~N~l~~~p~vi~-~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnep 157 (177)
T KOG4579|consen 82 LNLANNEISDVPEE---LAAMPALRSLNLRFNPLNAEPRVIA-PLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEP 157 (177)
T ss_pred hhcchhhhhhchHH---HhhhHHhhhcccccCccccchHHHH-HHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCc
Confidence 68999999999975 8899999999999999998876655 599999999999999999887665544 566
Q ss_pred ccccCC
Q psy10386 75 LVCTCD 80 (166)
Q Consensus 75 ~~C~C~ 80 (166)
|.-.|.
T Consensus 158 l~~~~~ 163 (177)
T KOG4579|consen 158 LGDETK 163 (177)
T ss_pred ccccCc
Confidence 665554
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.13 E-value=0.00014 Score=62.50 Aligned_cols=65 Identities=25% Similarity=0.294 Sum_probs=46.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+|+.++.. .++|+.|++++|+++.+|.. ..+|+.|++++|+++.+|... ..+. +|
T Consensus 387 LdLs~N~Lt~LP~l------~s~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~sl-~~L~~L~~LdLs~N 455 (788)
T PRK15387 387 LIVSGNRLTSLPVL------PSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPESL-IHLSSETTVNLEGN 455 (788)
T ss_pred EEecCCcccCCCCc------ccCCCEEEccCCcCCCCCcc----hhhhhhhhhccCcccccChHH-hhccCCCeEECCCC
Confidence 67778888776653 25688888888888887652 246788899999998887642 2232 88
Q ss_pred Cccc
Q psy10386 74 PLVC 77 (166)
Q Consensus 74 p~~C 77 (166)
++..
T Consensus 456 ~Ls~ 459 (788)
T PRK15387 456 PLSE 459 (788)
T ss_pred CCCc
Confidence 8864
No 32
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.12 E-value=0.00017 Score=33.12 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=9.0
Q ss_pred CceeeccCCcCCccCcc
Q psy10386 25 LDSLVLAHNQLRTIPPR 41 (166)
Q Consensus 25 L~~L~ls~N~l~~i~~~ 41 (166)
|++||+++|+++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 45555555555555444
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.11 E-value=0.00056 Score=58.83 Aligned_cols=65 Identities=26% Similarity=0.268 Sum_probs=34.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccC------------------CCCCCCEEeccCCcccccC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFA------------------HLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~------------------~l~~L~~l~l~~N~l~~~~ 63 (166)
|++++|+|+.++.. .+ .+|+.|++++|+++.++..... -..+|+.|++++|+|+.++
T Consensus 204 L~Ls~N~LtsLP~~--l~---~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP 278 (754)
T PRK15370 204 LILDNNELKSLPEN--LQ---GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLP 278 (754)
T ss_pred EEecCCCCCcCChh--hc---cCCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccCccc
Confidence 56666666666654 32 3455555555555555432110 0125666666666666665
Q ss_pred ccccCCCC
Q psy10386 64 PAAFSGLE 71 (166)
Q Consensus 64 ~~~~~~l~ 71 (166)
...+..+.
T Consensus 279 ~~l~~sL~ 286 (754)
T PRK15370 279 ENLPEELR 286 (754)
T ss_pred cccCCCCc
Confidence 54443333
No 34
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=97.09 E-value=0.00038 Score=33.22 Aligned_cols=22 Identities=45% Similarity=0.753 Sum_probs=13.1
Q ss_pred ccCceeeccCCcCCccCccccC
Q psy10386 23 HNLDSLVLAHNQLRTIPPRVFA 44 (166)
Q Consensus 23 ~~L~~L~ls~N~l~~i~~~~f~ 44 (166)
++|+.|+|++|+|+.+++++|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4556666666666666665553
No 35
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=97.09 E-value=0.00038 Score=33.22 Aligned_cols=22 Identities=45% Similarity=0.753 Sum_probs=13.1
Q ss_pred ccCceeeccCCcCCccCccccC
Q psy10386 23 HNLDSLVLAHNQLRTIPPRVFA 44 (166)
Q Consensus 23 ~~L~~L~ls~N~l~~i~~~~f~ 44 (166)
++|+.|+|++|+|+.+++++|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4556666666666666665553
No 36
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.94 E-value=0.00047 Score=31.61 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=18.5
Q ss_pred CCCEEeccCCcccccCccccCCC
Q psy10386 48 LLNSLELDGNHIHTVDPAAFSGL 70 (166)
Q Consensus 48 ~L~~l~l~~N~l~~~~~~~~~~l 70 (166)
+|++||+++|+++.+++. |+.+
T Consensus 1 ~L~~Ldls~n~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTT-TTT-
T ss_pred CccEEECCCCcCEeCChh-hcCC
Confidence 589999999999999887 7653
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.93 E-value=0.0012 Score=56.90 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=41.6
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~ 67 (166)
|++++|.+..+|.. .+ .+|+.|++++|+++.++...+ .+|+.|++++|+++.++....
T Consensus 246 L~Ls~N~L~~LP~~--l~---s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp 303 (754)
T PRK15370 246 MELSINRITELPER--LP---SALQSLDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPAHLP 303 (754)
T ss_pred EECcCCccCcCChh--Hh---CCCCEEECcCCccCccccccC---CCCcEEECCCCccccCcccch
Confidence 45566666655543 21 468888999998888876432 589999999999999876543
No 38
>KOG0531|consensus
Probab=96.89 E-value=0.00041 Score=55.68 Aligned_cols=58 Identities=26% Similarity=0.456 Sum_probs=29.7
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|++.+|+|..+... +..+++|+.|++++|+|+.+.+ +..+..|+.|++++|.++.+..
T Consensus 100 l~l~~n~i~~i~~~---l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~ 157 (414)
T KOG0531|consen 100 LDLYDNKIEKIENL---LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG 157 (414)
T ss_pred eeccccchhhcccc---hhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC
Confidence 44555555555541 3345555555555555555544 3344445555555555554443
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.85 E-value=0.0015 Score=56.34 Aligned_cols=53 Identities=23% Similarity=0.476 Sum_probs=31.7
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~ 63 (166)
|++++|.++.+|+. .. ++|+.|++++|+++.++. .+++|+.|++++|+|+.++
T Consensus 206 LdLs~~~LtsLP~~--l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP 258 (788)
T PRK15387 206 LNVGESGLTTLPDC--LP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLP 258 (788)
T ss_pred EEcCCCCCCcCCcc--hh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCccc
Confidence 67777777777764 22 255666666666666553 1355666666666665554
No 40
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.80 E-value=0.00096 Score=31.76 Aligned_cols=23 Identities=39% Similarity=0.762 Sum_probs=21.0
Q ss_pred CCCCCEEeccCCcccccCccccC
Q psy10386 46 LPLLNSLELDGNHIHTVDPAAFS 68 (166)
Q Consensus 46 l~~L~~l~l~~N~l~~~~~~~~~ 68 (166)
+++|+.|++++|+|+.+++++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46899999999999999999886
No 41
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.80 E-value=0.00096 Score=31.76 Aligned_cols=23 Identities=39% Similarity=0.762 Sum_probs=21.0
Q ss_pred CCCCCEEeccCCcccccCccccC
Q psy10386 46 LPLLNSLELDGNHIHTVDPAAFS 68 (166)
Q Consensus 46 l~~L~~l~l~~N~l~~~~~~~~~ 68 (166)
+++|+.|++++|+|+.+++++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46899999999999999999886
No 42
>KOG0531|consensus
Probab=96.43 E-value=0.0013 Score=52.76 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=50.5
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
.|++++|.|+.+.+- ..++.|+.|++++|.|+.+.. |..+..|+.+++++|.+..+..
T Consensus 122 ~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 122 VLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred heeccccccccccch----hhccchhhheeccCcchhccC--CccchhhhcccCCcchhhhhhh
Confidence 378999999998864 567779999999999999976 6678999999999999998887
No 43
>KOG1644|consensus
Probab=96.41 E-value=0.003 Score=45.73 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=49.9
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCcccccCc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
+|.+++|+|+.+.++ .-.-+++|+.|.|.+|.|+.+.. ..+..+++|++|.+-+|+...-..
T Consensus 68 tLll~nNrIt~I~p~--L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~ 130 (233)
T KOG1644|consen 68 TLLLNNNRITRIDPD--LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN 130 (233)
T ss_pred eEEecCCcceeeccc--hhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccC
Confidence 478999999999998 55567889999999999887532 235678899999999999876543
No 44
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.40 E-value=0.0021 Score=27.51 Aligned_cols=15 Identities=40% Similarity=0.662 Sum_probs=6.2
Q ss_pred cCceeeccCCcCCcc
Q psy10386 24 NLDSLVLAHNQLRTI 38 (166)
Q Consensus 24 ~L~~L~ls~N~l~~i 38 (166)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555444
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.36 E-value=0.0012 Score=52.40 Aligned_cols=60 Identities=30% Similarity=0.490 Sum_probs=37.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~ 65 (166)
|++++|++..++. ....+++|+.|++++|+++.++.... .+++|+.|++++|+++.++..
T Consensus 145 L~l~~N~i~~l~~---~~~~l~~L~~L~l~~N~l~~l~~~~~-~~~~L~~L~ls~N~i~~l~~~ 204 (394)
T COG4886 145 LDLSDNKIESLPS---PLRNLPNLKNLDLSFNDLSDLPKLLS-NLSNLNNLDLSGNKISDLPPE 204 (394)
T ss_pred ccccccchhhhhh---hhhccccccccccCCchhhhhhhhhh-hhhhhhheeccCCccccCchh
Confidence 4566666666642 23466666666666666666665421 456677777777777766664
No 46
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.06 E-value=0.0043 Score=26.47 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=11.5
Q ss_pred CCCCEEeccCCcccccC
Q psy10386 47 PLLNSLELDGNHIHTVD 63 (166)
Q Consensus 47 ~~L~~l~l~~N~l~~~~ 63 (166)
++|+.|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998775
No 47
>KOG1859|consensus
Probab=96.01 E-value=0.00047 Score=58.38 Aligned_cols=62 Identities=27% Similarity=0.338 Sum_probs=51.0
Q ss_pred EecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC
Q psy10386 3 EIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69 (166)
Q Consensus 3 ~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~ 69 (166)
+.+.|++..++. ++.-++.|+.|+|++|+++.+. .+..+++|++||++.|.|+.++.-.-.+
T Consensus 170 ~fsyN~L~~mD~---SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~g 231 (1096)
T KOG1859|consen 170 SFSYNRLVLMDE---SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVG 231 (1096)
T ss_pred hcchhhHHhHHH---HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhh
Confidence 456777776665 5677889999999999999997 5789999999999999999887754444
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.94 E-value=0.0035 Score=49.79 Aligned_cols=60 Identities=25% Similarity=0.423 Sum_probs=50.3
Q ss_pred EEecCCCCceeeCCccccCCCc-cCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLH-NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~-~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~ 65 (166)
|++.+|+++.+++. ...+. +|+.|++++|.++.++.. ...+++|+.|++++|++..++..
T Consensus 121 L~l~~n~i~~i~~~---~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~ 181 (394)
T COG4886 121 LDLDNNNITDIPPL---IGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKL 181 (394)
T ss_pred EecCCcccccCccc---cccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhh
Confidence 67889999999985 23443 899999999999999632 56889999999999999998886
No 49
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.71 E-value=0.023 Score=37.50 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=22.0
Q ss_pred CCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcccc
Q psy10386 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67 (166)
Q Consensus 8 ~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~ 67 (166)
.+..+... .|.+..+|+.+.+..+ ++.+...+|.+..+++.+.+.+ .+..++...|
T Consensus 22 ~~~~I~~~--~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 22 TIKKIGEN--AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp T--EE-TT--TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred CeeEeChh--hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence 34444444 4555555555555443 4555555555544455555533 4444444443
No 50
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.70 E-value=0.021 Score=37.70 Aligned_cols=63 Identities=22% Similarity=0.413 Sum_probs=46.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~ 69 (166)
+.+.++ +..+... .|.+..+++.+.+.+ .+..++...|....+++.+++..+ +..+....|..
T Consensus 40 i~~~~~-~~~i~~~--~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~ 102 (129)
T PF13306_consen 40 INFPNN-LTSIGDN--AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN 102 (129)
T ss_dssp EEESST-TSCE-TT--TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred cccccc-cccccee--eeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence 445554 8888888 999998999999976 778888889988999999999876 88888877764
No 51
>KOG0532|consensus
Probab=95.37 E-value=0.0019 Score=53.30 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=37.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccc----------------------cCCCCCCCEEeccCCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRV----------------------FAHLPLLNSLELDGNHI 59 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~----------------------f~~l~~L~~l~l~~N~l 59 (166)
|-+++|+++.++.+ .+.+..|.+||.+.|.+..+++.. +..| .|..||++.|++
T Consensus 148 li~sNNkl~~lp~~---ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLTSLPEE---IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccccCCcc---cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCce
Confidence 34555555555554 234555555555555555544331 1122 366677777777
Q ss_pred cccCccccCCCC--------CCCcc
Q psy10386 60 HTVDPAAFSGLE--------DNPLV 76 (166)
Q Consensus 60 ~~~~~~~~~~l~--------~Np~~ 76 (166)
..||-. |..+. +||++
T Consensus 224 s~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 224 SYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eecchh-hhhhhhheeeeeccCCCC
Confidence 777643 33333 67775
No 52
>KOG0532|consensus
Probab=94.93 E-value=0.0057 Score=50.62 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=28.5
Q ss_pred ecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386 4 IWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65 (166)
Q Consensus 4 ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~ 65 (166)
++.|.+..++. ....+..|..||++.|+++.++...+ . --|+.|-+++|++..+++.
T Consensus 105 Ly~n~~r~ip~---~i~~L~~lt~l~ls~NqlS~lp~~lC-~-lpLkvli~sNNkl~~lp~~ 161 (722)
T KOG0532|consen 105 LYHNCIRTIPE---AICNLEALTFLDLSSNQLSHLPDGLC-D-LPLKVLIVSNNKLTSLPEE 161 (722)
T ss_pred HHhccceecch---hhhhhhHHHHhhhccchhhcCChhhh-c-CcceeEEEecCccccCCcc
Confidence 33444444443 23445555555555555555555543 2 2255555555555555543
No 53
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.35 E-value=0.016 Score=44.30 Aligned_cols=38 Identities=29% Similarity=0.360 Sum_probs=17.5
Q ss_pred ccCceeeccCCcCCccC----ccccCCCCCCCEEeccCCccc
Q psy10386 23 HNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIH 60 (166)
Q Consensus 23 ~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l~~N~l~ 60 (166)
++|+.|++++|.++.-. ...+..+++|+.|++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 45555555555554210 112333445555555555544
No 54
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.22 E-value=0.013 Score=44.85 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=32.1
Q ss_pred EEecCCCCceeeCCccccCCCcc---CceeeccCCcCCccC----ccccCCC-CCCCEEeccCCccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHN---LDSLVLAHNQLRTIP----PRVFAHL-PLLNSLELDGNHIH 60 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~---L~~L~ls~N~l~~i~----~~~f~~l-~~L~~l~l~~N~l~ 60 (166)
|++++|.+....+. .|..+.+ |+.|++++|+++... ...+..+ ++|+.|++++|.++
T Consensus 86 L~l~~~~~~~~~~~--~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 86 LDLSDNALGPDGCG--VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred EEccCCCCChhHHH--HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 56666666543333 3444444 777777777665211 1223344 67777777777766
No 55
>KOG2739|consensus
Probab=94.14 E-value=0.035 Score=41.56 Aligned_cols=43 Identities=28% Similarity=0.354 Sum_probs=32.1
Q ss_pred ccCCCccCceeeccCC--cCCc-cCccccCCCCCCCEEeccCCcccc
Q psy10386 18 TSGGLHNLDSLVLAHN--QLRT-IPPRVFAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 18 ~f~~l~~L~~L~ls~N--~l~~-i~~~~f~~l~~L~~l~l~~N~l~~ 61 (166)
.|..|++|+.|.++.| ++.. ++.- ....++|+++++++|+++-
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc
Confidence 4667889999999999 4432 3332 3355999999999999864
No 56
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=93.81 E-value=0.047 Score=26.02 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=10.0
Q ss_pred ccCceeeccCCcCCccC
Q psy10386 23 HNLDSLVLAHNQLRTIP 39 (166)
Q Consensus 23 ~~L~~L~ls~N~l~~i~ 39 (166)
.+|+.|+++.|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45666666666665553
No 57
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.77 E-value=0.11 Score=47.20 Aligned_cols=51 Identities=22% Similarity=0.425 Sum_probs=24.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCC-cCCccCccccCCCCCCCEEeccCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGN 57 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N-~l~~i~~~~f~~l~~L~~l~l~~N 57 (166)
|++++|++..++.+ +..+++|+.|+++++ .++.++. +..+++|+.|++++|
T Consensus 616 L~L~~s~l~~L~~~---~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 616 LQMQGSKLEKLWDG---VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDC 667 (1153)
T ss_pred EECcCccccccccc---cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCC
Confidence 44555555554432 345555555555544 2334432 334444555555443
No 58
>KOG2123|consensus
Probab=93.71 E-value=0.0048 Score=46.93 Aligned_cols=54 Identities=24% Similarity=0.301 Sum_probs=33.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHI 59 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l 59 (166)
|.||-|+|+.+.+ |.+..+|++|+|..|.|..+.. ..+.++++|+.|.|..|+-
T Consensus 46 LsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 46 LSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred EEeeccccccchh----HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 5566666666653 4566666666666666666543 2345666666666666654
No 59
>KOG4658|consensus
Probab=93.37 E-value=0.023 Score=50.02 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=25.9
Q ss_pred EEecCC-CCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCc
Q psy10386 2 IEIWGG-QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH 58 (166)
Q Consensus 2 L~ls~N-~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~ 58 (166)
|||++| .+..+|. ..++|-+||+|++++..++.+|.+ ++.+..|.+|++..+.
T Consensus 576 LDLs~~~~l~~LP~---~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPS---SIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTG 629 (889)
T ss_pred EECCCCCccCcCCh---HHhhhhhhhcccccCCCccccchH-HHHHHhhheecccccc
Confidence 455544 3333433 234455555555555555555444 4455555555555443
No 60
>KOG4658|consensus
Probab=93.05 E-value=0.04 Score=48.52 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=46.3
Q ss_pred EecCCC--CceeeCCccccCCCccCceeeccCC-cCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386 3 EIWGGQ--LSSIFEKVATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65 (166)
Q Consensus 3 ~ls~N~--l~~~~~~~~~f~~l~~L~~L~ls~N-~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~ 65 (166)
-+..|. +..++.+ .|..++.|+.|||++| .+..+|.. .+.+-+|++|++++..++.+|.+
T Consensus 551 ll~~n~~~l~~is~~--ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 551 LLQRNSDWLLEISGE--FFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSG 613 (889)
T ss_pred EEeecchhhhhcCHH--HHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchH
Confidence 344554 5556666 6899999999999988 56667554 67899999999999999888764
No 61
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=92.93 E-value=0.19 Score=45.69 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=29.9
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCC-cCCccCccccCCCCCCCEEeccCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGN 57 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N-~l~~i~~~~f~~l~~L~~l~l~~N 57 (166)
|++++|....-.|. .+.++++|+.|+++++ .++.+|... .+++|+.|++++|
T Consensus 783 L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c 835 (1153)
T PLN03210 783 LFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGC 835 (1153)
T ss_pred eeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCC
Confidence 55666643332333 5777888888888775 566665442 3445555555543
No 62
>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.
Probab=92.68 E-value=0.048 Score=25.63 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=16.6
Q ss_pred ceecCCCCCCcccCccccCCCC-cccCC
Q psy10386 104 TVCTLGSSNVHQREIKLSDLPK-QLVCE 130 (166)
Q Consensus 104 ~~C~~p~~~~~~~~~~l~~~~~-~~~C~ 130 (166)
..|..|+. ++| ++.+++. ++.|.
T Consensus 2 ~~Ca~P~~---lrg-~l~~~~~~~f~C~ 25 (25)
T PF01463_consen 2 ARCASPPE---LRG-PLLDLPPSDFKCS 25 (25)
T ss_dssp -BEEESGG---GTT-BGGGSSGGG----
T ss_pred CccCCChH---HcC-cHhhCCcccCcCC
Confidence 67999999 999 9999987 77773
No 63
>KOG2123|consensus
Probab=91.83 E-value=0.0088 Score=45.57 Aligned_cols=64 Identities=25% Similarity=0.415 Sum_probs=50.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc-ccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA-AFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~-~~~~l~ 71 (166)
|+..+..++.+. .-..++.|+.|.||-|+|+.+.+ |....+|+.|+|..|.|..+..- .+.+++
T Consensus 24 LNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 24 LNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred hcccCCCccHHH----HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 445555665554 34678999999999999999987 77899999999999999888763 345555
No 64
>KOG3207|consensus
Probab=91.63 E-value=0.15 Score=41.20 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=36.7
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccc------cCCCCCCCEEeccCCcccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRV------FAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~------f~~l~~L~~l~l~~N~l~~ 61 (166)
|||++|++-..+.. .....++.|+.|+++.+.+..+..-. ....++|++|++..|++..
T Consensus 251 LdLs~N~li~~~~~-~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQG-YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ccccCCcccccccc-cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 67777777665532 03445667777777777776654211 2345778888888888744
No 65
>KOG0473|consensus
Probab=90.98 E-value=0.0033 Score=46.67 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=29.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 62 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~ 62 (166)
||++.|++-.+... |+-+..|..||++.|++..++.+ |..+..+..+++.+|.++..
T Consensus 47 ld~~s~r~vn~~~n---~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~ 103 (326)
T KOG0473|consen 47 LDLSSNRLVNLGKN---FSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQ 103 (326)
T ss_pred ehhhhhHHHhhccc---hHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhC
Confidence 45555555544443 55555555566666655555544 34444455555555555444
No 66
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.90 E-value=0.16 Score=24.15 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=12.9
Q ss_pred CCCCEEeccCCcccccCc
Q psy10386 47 PLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 47 ~~L~~l~l~~N~l~~~~~ 64 (166)
++|+.|+.++|+|+++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457777777777777765
No 67
>KOG3207|consensus
Probab=90.05 E-value=0.095 Score=42.26 Aligned_cols=44 Identities=30% Similarity=0.372 Sum_probs=21.1
Q ss_pred cCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCccccc
Q psy10386 19 SGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTV 62 (166)
Q Consensus 19 f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l~~~ 62 (166)
+.-+..|+.|||++|++-..+. .....++.|..|+++.+.+.++
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence 4444555555555555544442 1223344555555555555443
No 68
>KOG0473|consensus
Probab=88.69 E-value=0.033 Score=41.50 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=48.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~ 60 (166)
|+++.|++..++.+ |..+..++.+++..|.++..|.+ |...+.++.+++.+|.+.
T Consensus 70 l~~sknq~~~~~~d---~~q~~e~~~~~~~~n~~~~~p~s-~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 70 LDLSKNQIKFLPKD---AKQQRETVNAASHKNNHSQQPKS-QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HhccHhhHhhChhh---HHHHHHHHHHHhhccchhhCCcc-ccccCCcchhhhccCcch
Confidence 68899999888874 88999999999999999988765 789999999999999854
No 69
>KOG2982|consensus
Probab=88.69 E-value=0.17 Score=39.11 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=14.5
Q ss_pred CceeeccCCcCCccC--ccccCCCCCCCEEeccCCcc
Q psy10386 25 LDSLVLAHNQLRTIP--PRVFAHLPLLNSLELDGNHI 59 (166)
Q Consensus 25 L~~L~ls~N~l~~i~--~~~f~~l~~L~~l~l~~N~l 59 (166)
++.+||.+|+|+... ...+.++|.|++|+++.|++
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC
Confidence 344444444444322 12233444444444444444
No 70
>KOG2739|consensus
Probab=88.66 E-value=0.27 Score=36.93 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=39.4
Q ss_pred EEecCC--CCc-eeeCCccccCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCcccccC
Q psy10386 2 IEIWGG--QLS-SIFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 2 L~ls~N--~l~-~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l~~~~ 63 (166)
|.+|.| ++. ++... -..+++|++|++++|+++.+.. ...+.+.+|..|++.++.-..+.
T Consensus 70 L~lsdn~~~~~~~l~vl---~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~ 132 (260)
T KOG2739|consen 70 LELSDNYRRVSGGLEVL---AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD 132 (260)
T ss_pred hcccCCcccccccceeh---hhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc
Confidence 567888 443 23332 3355999999999999875321 12456778888999888765543
No 71
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=85.50 E-value=0.4 Score=46.66 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=29.8
Q ss_pred EecCCCCceeeCCccccCCCccCceeeccCCcCC
Q psy10386 3 EIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLR 36 (166)
Q Consensus 3 ~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~ 36 (166)
||++|+|+.++++ .|.++++|+.|+|++|-+.
T Consensus 1 DLSnN~LstLp~g--~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEG--ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChH--HhccCCCceEEEeeCCccc
Confidence 6899999999999 9999999999999999763
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.84 E-value=0.66 Score=21.14 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=8.7
Q ss_pred CCCCEEeccCCcccc
Q psy10386 47 PLLNSLELDGNHIHT 61 (166)
Q Consensus 47 ~~L~~l~l~~N~l~~ 61 (166)
++|+.|++++|+++.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 567777777777653
No 73
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.53 E-value=0.73 Score=22.06 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=7.5
Q ss_pred cCceeeccCCcCC
Q psy10386 24 NLDSLVLAHNQLR 36 (166)
Q Consensus 24 ~L~~L~ls~N~l~ 36 (166)
+|+.|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 74
>KOG3763|consensus
Probab=81.72 E-value=0.5 Score=39.27 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCccCceeeccCCcCCccCc--cccCCCCCCCEEeccCC
Q psy10386 21 GLHNLDSLVLAHNQLRTIPP--RVFAHLPLLNSLELDGN 57 (166)
Q Consensus 21 ~l~~L~~L~ls~N~l~~i~~--~~f~~l~~L~~l~l~~N 57 (166)
+.+.+..+.|++|++..++. ..-+..|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34566667777777766642 11223567777777777
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=81.55 E-value=2.1 Score=34.77 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=33.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccC-CcCCccCccccCCCCCCCEEeccCC-cccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~-N~l~~i~~~~f~~l~~L~~l~l~~N-~l~~~~~ 64 (166)
|+++++.++.+|.- .++|+.|.+++ +.++.++.. + ..+|+.|++++| .+..+++
T Consensus 57 L~Is~c~L~sLP~L------P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 57 LYIKDCDIESLPVL------PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred EEeCCCCCcccCCC------CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc
Confidence 67788877777632 24577778766 466555532 2 246777777777 5655543
No 76
>KOG2982|consensus
Probab=78.17 E-value=1.3 Score=34.44 Aligned_cols=58 Identities=26% Similarity=0.227 Sum_probs=36.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l 59 (166)
|||.+|.|+.-..--.....+|.|+.|+++.|.+..-....=.++.+|+.+-|.+..+
T Consensus 76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 6788888875432101467888999999999988653322102455666666666554
No 77
>KOG3763|consensus
Probab=71.50 E-value=2.6 Score=35.22 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=38.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCC--cCCccC-ccccCCCCCCCEEeccCCcccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHN--QLRTIP-PRVFAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N--~l~~i~-~~~f~~l~~L~~l~l~~N~l~~ 61 (166)
+.|++|++..+..-.+.-...+.|..|+|++| .+..-. -+.+++ ..|+.|-+.+|++-+
T Consensus 223 l~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 223 LSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred eecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence 57899999888753112334578999999999 444322 122333 347888888888743
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=66.79 E-value=5.1 Score=30.95 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=33.5
Q ss_pred cCCCccCceeeccCCcCCccCc----cccCCCCCCCEEeccCCcccccCc
Q psy10386 19 SGGLHNLDSLVLAHNQLRTIPP----RVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 19 f~~l~~L~~L~ls~N~l~~i~~----~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
+.+.+.|+..+||.|.+..-.+ +..+....|.+|.+++|.+..+..
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG 137 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG 137 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch
Confidence 4466889999999998764322 335566789999999998866544
No 79
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=61.34 E-value=6.4 Score=25.77 Aligned_cols=32 Identities=28% Similarity=0.236 Sum_probs=21.7
Q ss_pred CCCCCCCcccchhhhHHHHHHHHHHhhheeeC
Q psy10386 135 GRRSPNSAPSASLSGSFIALLVAAADLVCIVF 166 (166)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 166 (166)
.+.+..+.......+++++.+++.++++++|+
T Consensus 49 epis~lg~ysawgagsfiatliillviffviy 80 (150)
T PF06084_consen 49 EPISMLGIYSAWGAGSFIATLIILLVIFFVIY 80 (150)
T ss_pred CcchhhhhhhhcccchHHHHHHHHHHHhheeE
Confidence 33455556667777888888887777777664
No 80
>KOG1909|consensus
Probab=55.19 E-value=4.5 Score=31.99 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=26.1
Q ss_pred ccCCCccCceeeccCCcCCcc----CccccCCCCCCCEEeccCCcccc
Q psy10386 18 TSGGLHNLDSLVLAHNQLRTI----PPRVFAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 18 ~f~~l~~L~~L~ls~N~l~~i----~~~~f~~l~~L~~l~l~~N~l~~ 61 (166)
.|...+.|+.+.++.|.|..- -..+|...++|+.||++.|.++.
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 355556666777777765431 22345566677777777776643
No 81
>KOG1909|consensus
Probab=54.02 E-value=6.3 Score=31.22 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=38.8
Q ss_pred EecCCCCcee----eCCccccCCCccCceeeccCCcCCccC----ccccCCCCCCCEEeccCCcccc
Q psy10386 3 EIWGGQLSSI----FEKVATSGGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 3 ~ls~N~l~~~----~~~~~~f~~l~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l~~N~l~~ 61 (166)
.++.|.|..- ... .|...++|+.|||.+|.++..- ..++..+++|+.++++...+..
T Consensus 191 r~~qN~I~~eG~~al~e--al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 191 RLSQNGIRPEGVTALAE--ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred EEecccccCchhHHHHH--HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 4556655421 223 5777888999999999887543 3346667788888888877754
No 82
>KOG3665|consensus
Probab=48.35 E-value=6.4 Score=34.19 Aligned_cols=42 Identities=31% Similarity=0.472 Sum_probs=20.5
Q ss_pred CCccCceeeccCCcCCccC-ccccCCCCCCCEEeccCCccccc
Q psy10386 21 GLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTV 62 (166)
Q Consensus 21 ~l~~L~~L~ls~N~l~~i~-~~~f~~l~~L~~l~l~~N~l~~~ 62 (166)
-+|+|+.|.+++-.+..-. ...+..+++|..||+++.+++.+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL 188 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc
Confidence 3555555555554443222 22344455555556555555433
No 83
>PRK15386 type III secretion protein GogB; Provisional
Probab=46.06 E-value=21 Score=29.09 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCccCceeeccCCcCCccCccccCCCCCCCEEeccC-CcccccCc
Q psy10386 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG-NHIHTVDP 64 (166)
Q Consensus 21 ~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~-N~l~~~~~ 64 (166)
.+.+++.|+++++.++.+|. + ..+|+.|.+++ +.+..++.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~ 90 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPG 90 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCc
Confidence 35788999999999999972 2 34799999987 56666654
No 84
>KOG1026|consensus
Probab=45.96 E-value=18 Score=31.71 Aligned_cols=71 Identities=24% Similarity=0.494 Sum_probs=49.0
Q ss_pred CCccCceeeccCCcCCccCccccCCCCCCCEEeccCCc---ccccCccccCCCC-------CCCccccCCcHHHHHHHHh
Q psy10386 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH---IHTVDPAAFSGLE-------DNPLVCTCDLMWYKEWSTS 90 (166)
Q Consensus 21 ~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~---l~~~~~~~~~~l~-------~Np~~C~C~l~~l~~~~~~ 90 (166)
+.+.++.++.-.-.+.......+...+.+....+..+. +..++...++.+. +|+.+|.|...|+..|.+.
T Consensus 83 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~e~ 162 (774)
T KOG1026|consen 83 NYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTELSLVGNPFTCSCSIRWLDRYRED 162 (774)
T ss_pred cchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccchhhhccCCCCcchhhhHHhhhccc
Confidence 34444444444445555666666677778888888887 6666666666666 8999999999998876554
Q ss_pred c
Q psy10386 91 L 91 (166)
Q Consensus 91 ~ 91 (166)
.
T Consensus 163 ~ 163 (774)
T KOG1026|consen 163 G 163 (774)
T ss_pred C
Confidence 3
No 85
>KOG3665|consensus
Probab=41.83 E-value=20 Score=31.31 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=31.0
Q ss_pred cCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccc
Q psy10386 19 SGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60 (166)
Q Consensus 19 f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~ 60 (166)
+.++++|..||+|+-.++.+. ..+.+++|+.|.+.+=.+.
T Consensus 169 c~sFpNL~sLDIS~TnI~nl~--GIS~LknLq~L~mrnLe~e 208 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNLS--GISRLKNLQVLSMRNLEFE 208 (699)
T ss_pred hhccCccceeecCCCCccCcH--HHhccccHHHHhccCCCCC
Confidence 456789999999999999883 3678888888877754443
No 86
>KOG3864|consensus
Probab=39.37 E-value=5.2 Score=29.28 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=10.0
Q ss_pred CCCCCEEeccCCc
Q psy10386 46 LPLLNSLELDGNH 58 (166)
Q Consensus 46 l~~L~~l~l~~N~ 58 (166)
.++|+.|++++++
T Consensus 150 ~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 150 APSLQDLDLSGCP 162 (221)
T ss_pred ccchheeeccCCC
Confidence 4688888888774
No 87
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=23.34 E-value=23 Score=23.26 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=1.9
Q ss_pred cchhhhHHHHHHHHHHhhheee
Q psy10386 144 SASLSGSFIALLVAAADLVCIV 165 (166)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~v~~~ 165 (166)
....++++++++.+.+++.|++
T Consensus 25 EAaGIGiL~VILgiLLliGCWY 46 (118)
T PF14991_consen 25 EAAGIGILIVILGILLLIGCWY 46 (118)
T ss_dssp ---SSS----------------
T ss_pred HhccceeHHHHHHHHHHHhhee
Confidence 4555666666666666666664
No 88
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=22.83 E-value=1.3e+02 Score=15.65 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=18.9
Q ss_pred ccCceeeccCCcCCccCccccCCCCCCCEEecc
Q psy10386 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 55 (166)
Q Consensus 23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~ 55 (166)
.+++.|.+.++.=+.+.++.+. .+++.|.+.
T Consensus 12 ~~l~~L~~g~~fn~~i~~~~lP--~sl~~L~fg 42 (44)
T PF05725_consen 12 SSLKSLIFGSSFNQPIEPGSLP--NSLKSLSFG 42 (44)
T ss_pred CCCeEEEECCccCccCCCCccC--CCceEEEee
Confidence 4677788866555556555442 467777654
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=20.76 E-value=75 Score=14.33 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=7.9
Q ss_pred CCCCEEeccCCc
Q psy10386 47 PLLNSLELDGNH 58 (166)
Q Consensus 47 ~~L~~l~l~~N~ 58 (166)
++|+.|++++..
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 467777777654
Done!