Query psy10386
Match_columns 166
No_of_seqs 210 out of 2281
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 16:31:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wfh_A SLIT homolog 2 protein 99.9 4.3E-22 1.5E-26 142.4 10.4 119 2-131 59-186 (193)
2 4g8a_A TOLL-like receptor 4; l 99.9 9.6E-22 3.3E-26 160.9 11.9 120 1-130 498-626 (635)
3 2v9t_B SLIT homolog 2 protein 99.9 1.3E-21 4.4E-26 142.4 10.3 121 2-133 85-214 (220)
4 1w8a_A SLIT protein; signaling 99.9 6.2E-21 2.1E-25 136.0 12.0 121 2-133 59-188 (192)
5 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-20 7.3E-25 136.0 10.2 121 2-133 86-215 (220)
6 3zyj_A Leucine-rich repeat-con 99.8 1.2E-19 4.3E-24 143.9 11.5 124 2-134 212-344 (440)
7 3zyi_A Leucine-rich repeat-con 99.8 4.6E-19 1.6E-23 141.1 12.0 125 2-135 223-356 (452)
8 3g39_A Variable lymphocyte rec 99.8 6.4E-19 2.2E-23 123.4 10.8 106 2-109 35-151 (170)
9 2r9u_A Variable lymphocyte rec 99.8 6.2E-18 2.1E-22 118.8 11.3 107 1-109 37-157 (174)
10 2ifg_A High affinity nerve gro 99.8 3.9E-18 1.3E-22 131.3 11.0 104 2-111 36-147 (347)
11 3j0a_A TOLL-like receptor 5; m 99.7 2.1E-18 7.2E-23 146.7 5.0 120 2-131 485-609 (844)
12 1p9a_G Platelet glycoprotein I 99.7 3.7E-17 1.3E-21 123.5 11.3 90 2-93 129-225 (290)
13 3rfe_A Platelet glycoprotein I 99.7 2.7E-17 9.4E-22 110.4 8.2 102 2-131 13-119 (130)
14 2z66_A Variable lymphocyte rec 99.7 7.7E-17 2.6E-21 121.9 11.0 115 2-124 180-303 (306)
15 1ozn_A Reticulon 4 receptor; N 99.7 5.9E-17 2E-21 121.5 8.6 117 2-129 158-284 (285)
16 1ziw_A TOLL-like receptor 3; i 99.7 4.3E-18 1.5E-22 141.2 1.1 117 2-125 541-667 (680)
17 3vq2_A TLR4, TOLL-like recepto 99.7 6E-17 2.1E-21 132.7 6.8 118 2-129 478-604 (606)
18 3m19_A Variable lymphocyte rec 99.7 5.5E-16 1.9E-20 114.4 10.9 90 2-93 112-210 (251)
19 3t6q_A CD180 antigen; protein- 99.7 1E-16 3.5E-21 131.3 6.8 114 2-124 481-602 (606)
20 2o6q_A Variable lymphocyte rec 99.6 1.3E-15 4.3E-20 113.6 11.5 120 2-132 138-269 (270)
21 3e6j_A Variable lymphocyte rec 99.6 1.5E-15 5.2E-20 110.8 11.2 106 2-109 69-211 (229)
22 2id5_A Lingo-1, leucine rich r 99.6 2.7E-16 9.2E-21 125.6 7.1 120 2-132 253-385 (477)
23 2o6r_A Variable lymphocyte rec 99.6 2.9E-15 9.9E-20 104.9 9.1 103 2-111 57-168 (177)
24 2xot_A Amphoterin-induced prot 99.6 1.5E-15 5.2E-20 117.7 8.0 106 2-111 93-236 (361)
25 3v47_A TOLL-like receptor 5B a 99.5 7E-14 2.4E-18 110.7 10.3 103 2-111 328-439 (455)
26 2o6s_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 93.8 11.3 90 2-93 81-179 (208)
27 2z7x_B TOLL-like receptor 1, v 99.4 4.4E-13 1.5E-17 107.9 8.2 83 23-111 421-512 (520)
28 2z62_A TOLL-like receptor 4, v 99.4 6.1E-13 2.1E-17 99.1 7.4 102 2-111 129-268 (276)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.3E-12 4.5E-17 106.3 9.5 85 23-108 450-546 (562)
30 2z63_A TOLL-like receptor 4, v 99.4 1.8E-12 6E-17 105.2 9.2 103 2-111 450-562 (570)
31 3rfs_A Internalin B, repeat mo 99.3 5.2E-12 1.8E-16 94.1 9.7 90 2-93 138-236 (272)
32 2z81_A CD282 antigen, TOLL-lik 99.3 7.4E-12 2.5E-16 101.2 7.8 84 21-111 449-541 (549)
33 2z80_A TOLL-like receptor 2, v 99.3 2.2E-12 7.4E-17 99.3 4.1 64 43-111 273-345 (353)
34 4g8a_A TOLL-like receptor 4; l 99.2 1.5E-11 5.2E-16 100.4 6.9 68 2-71 57-124 (635)
35 2v9t_B SLIT homolog 2 protein 99.2 5.7E-11 2E-15 86.0 7.9 68 2-71 37-104 (220)
36 2wfh_A SLIT homolog 2 protein 99.1 9.6E-11 3.3E-15 83.2 7.0 67 2-71 36-102 (193)
37 2v70_A SLIT-2, SLIT homolog 2 99.1 1.3E-10 4.3E-15 84.1 7.7 68 2-71 62-129 (220)
38 2o6r_A Variable lymphocyte rec 99.1 3.8E-10 1.3E-14 78.6 7.2 68 2-71 33-100 (177)
39 1w8a_A SLIT protein; signaling 99.1 3.4E-10 1.2E-14 80.2 7.0 69 2-71 34-102 (192)
40 3g39_A Variable lymphocyte rec 99.0 3.7E-10 1.3E-14 78.5 6.1 61 1-63 58-118 (170)
41 2xot_A Amphoterin-induced prot 99.0 5.2E-10 1.8E-14 86.5 7.0 68 2-71 69-136 (361)
42 3m19_A Variable lymphocyte rec 99.0 6.9E-10 2.4E-14 81.5 7.2 65 2-68 64-128 (251)
43 2r9u_A Variable lymphocyte rec 99.0 6.6E-10 2.3E-14 77.6 6.5 62 1-64 61-122 (174)
44 2o6s_A Variable lymphocyte rec 99.0 8.5E-10 2.9E-14 78.7 7.2 68 2-71 33-100 (208)
45 3e6j_A Variable lymphocyte rec 98.9 1.4E-09 4.8E-14 79.0 6.6 69 1-71 44-112 (229)
46 4ay9_X Follicle-stimulating ho 98.9 3.9E-10 1.3E-14 86.8 3.6 67 2-71 159-226 (350)
47 1p9a_G Platelet glycoprotein I 98.9 1.7E-09 5.9E-14 81.3 6.8 68 2-71 105-172 (290)
48 2xwt_C Thyrotropin receptor; s 98.9 1.1E-09 3.9E-14 79.7 4.9 68 2-71 36-105 (239)
49 2o6q_A Variable lymphocyte rec 98.9 3.1E-09 1.1E-13 78.8 7.2 68 2-71 42-109 (270)
50 3zyi_A Leucine-rich repeat-con 98.9 3.2E-09 1.1E-13 84.3 7.1 68 2-71 80-147 (452)
51 1ozn_A Reticulon 4 receptor; N 98.9 4.6E-09 1.6E-13 78.3 7.6 68 2-71 110-177 (285)
52 1a9n_A U2A', U2A'; complex (nu 98.9 2.1E-09 7.1E-14 74.9 5.2 59 2-64 47-105 (176)
53 2z62_A TOLL-like receptor 4, v 98.9 4E-09 1.4E-13 78.3 7.0 68 2-71 33-100 (276)
54 3zyj_A Leucine-rich repeat-con 98.9 4.3E-09 1.5E-13 83.2 7.4 68 2-71 69-136 (440)
55 3rfs_A Internalin B, repeat mo 98.9 4.9E-09 1.7E-13 77.9 7.2 67 2-70 90-156 (272)
56 3v47_A TOLL-like receptor 5B a 98.8 4.2E-09 1.4E-13 83.2 6.4 68 2-71 304-371 (455)
57 2id5_A Lingo-1, leucine rich r 98.8 8.2E-09 2.8E-13 82.2 7.1 68 2-71 37-104 (477)
58 3o53_A Protein LRIM1, AGAP0063 98.8 6.3E-09 2.1E-13 78.9 6.0 76 2-83 174-257 (317)
59 3rgz_A Protein brassinosteroid 98.8 5.1E-09 1.7E-13 88.3 6.0 100 2-110 637-745 (768)
60 2z80_A TOLL-like receptor 2, v 98.8 9.1E-09 3.1E-13 79.0 6.9 65 2-68 57-121 (353)
61 4ay9_X Follicle-stimulating ho 98.8 7.6E-09 2.6E-13 79.6 6.1 68 2-71 35-104 (350)
62 3t6q_A CD180 antigen; protein- 98.8 9.8E-09 3.3E-13 83.9 7.0 68 2-71 38-105 (606)
63 3o6n_A APL1; leucine-rich repe 98.8 1.2E-08 4E-13 79.3 7.1 67 2-70 74-140 (390)
64 3vq2_A TLR4, TOLL-like recepto 98.8 1.1E-08 3.7E-13 83.7 7.1 68 2-71 37-104 (606)
65 1xku_A Decorin; proteoglycan, 98.8 1.5E-08 5E-13 77.1 7.4 68 2-71 57-124 (330)
66 3o6n_A APL1; leucine-rich repe 98.8 1.4E-08 4.7E-13 78.9 7.2 68 2-71 98-165 (390)
67 2ft3_A Biglycan; proteoglycan, 98.8 1.7E-08 5.9E-13 76.8 7.4 68 2-71 59-126 (332)
68 2z63_A TOLL-like receptor 4, v 98.8 1.3E-08 4.5E-13 82.4 7.0 68 2-71 33-100 (570)
69 2xwt_C Thyrotropin receptor; s 98.8 1.3E-08 4.3E-13 74.1 6.1 66 2-70 135-203 (239)
70 1xku_A Decorin; proteoglycan, 98.7 2.4E-08 8.2E-13 75.9 7.6 61 2-64 197-257 (330)
71 3oja_A Leucine-rich immune mol 98.7 1.7E-08 5.9E-13 81.0 7.1 73 2-80 174-254 (487)
72 2z81_A CD282 antigen, TOLL-lik 98.7 1.1E-08 3.8E-13 82.6 5.9 68 2-71 31-98 (549)
73 2ft3_A Biglycan; proteoglycan, 98.7 1.5E-08 5.1E-13 77.2 6.2 62 2-65 198-259 (332)
74 2ifg_A High affinity nerve gro 98.7 1.5E-08 5.2E-13 77.5 6.2 58 1-61 60-117 (347)
75 3oja_B Anopheles plasmodium-re 98.7 2.1E-08 7.2E-13 82.3 7.2 67 2-70 80-146 (597)
76 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 1.6E-08 5.6E-13 82.2 6.4 68 2-71 57-124 (562)
77 3oja_B Anopheles plasmodium-re 98.7 2.7E-08 9.1E-13 81.7 7.5 68 2-71 104-171 (597)
78 1a9n_A U2A', U2A'; complex (nu 98.7 1.2E-08 4.1E-13 70.9 4.6 63 1-65 68-131 (176)
79 2ell_A Acidic leucine-rich nuc 98.7 1E-08 3.6E-13 70.6 4.1 66 2-71 54-120 (168)
80 2ell_A Acidic leucine-rich nuc 98.7 2E-08 6.7E-13 69.2 5.3 62 2-68 29-92 (168)
81 1ogq_A PGIP-2, polygalacturona 98.7 2.3E-08 8E-13 75.7 5.2 67 2-71 202-268 (313)
82 1dce_A Protein (RAB geranylger 98.6 3.8E-08 1.3E-12 80.6 5.9 57 2-63 446-502 (567)
83 2z7x_B TOLL-like receptor 1, v 98.6 2.4E-08 8.1E-13 80.3 4.4 62 2-65 26-87 (520)
84 2z66_A Variable lymphocyte rec 98.6 6.1E-08 2.1E-12 72.8 6.4 67 2-70 131-198 (306)
85 1ziw_A TOLL-like receptor 3; i 98.6 6E-08 2.1E-12 80.3 6.8 68 2-71 78-145 (680)
86 2je0_A Acidic leucine-rich nuc 98.6 2.5E-08 8.7E-13 67.3 3.8 62 2-68 22-85 (149)
87 3j0a_A TOLL-like receptor 5; m 98.5 1.7E-07 5.6E-12 79.9 7.5 68 2-71 295-362 (844)
88 4b8c_D Glucose-repressible alc 98.5 7.4E-08 2.5E-12 81.0 5.1 70 2-76 252-329 (727)
89 1ogq_A PGIP-2, polygalacturona 98.5 1E-07 3.6E-12 72.1 4.4 57 2-60 106-162 (313)
90 1wwl_A Monocyte differentiatio 98.5 2E-07 6.8E-12 70.5 5.5 64 2-67 206-273 (312)
91 2je0_A Acidic leucine-rich nuc 98.5 1.5E-07 5E-12 63.5 4.3 58 2-63 47-104 (149)
92 4glp_A Monocyte differentiatio 98.4 3.8E-07 1.3E-11 68.8 6.6 69 2-70 202-274 (310)
93 3rgz_A Protein brassinosteroid 98.4 2.4E-07 8.2E-12 78.2 6.0 78 2-81 471-556 (768)
94 4ezg_A Putative uncharacterize 98.4 2.5E-07 8.4E-12 65.4 5.0 66 2-71 71-136 (197)
95 3sb4_A Hypothetical leucine ri 98.4 3.8E-07 1.3E-11 69.4 6.4 65 2-70 231-296 (329)
96 1dce_A Protein (RAB geranylger 98.4 3.1E-07 1E-11 75.2 5.7 72 2-78 468-548 (567)
97 1wwl_A Monocyte differentiatio 98.4 1.3E-07 4.5E-12 71.4 3.2 55 2-59 126-185 (312)
98 1xeu_A Internalin C; cellular 98.4 3.9E-07 1.3E-11 67.4 5.2 54 2-62 90-143 (263)
99 4b8c_D Glucose-repressible alc 98.4 1.6E-07 5.4E-12 79.0 3.4 63 1-67 274-336 (727)
100 4eco_A Uncharacterized protein 98.4 6.7E-07 2.3E-11 74.0 6.8 73 2-77 518-601 (636)
101 4fcg_A Uncharacterized protein 98.3 7.9E-07 2.7E-11 67.8 6.1 66 2-71 188-253 (328)
102 4fcg_A Uncharacterized protein 98.3 8.2E-07 2.8E-11 67.7 6.1 67 2-71 211-277 (328)
103 3sb4_A Hypothetical leucine ri 98.3 8.2E-07 2.8E-11 67.5 5.7 65 2-70 255-320 (329)
104 3oja_A Leucine-rich immune mol 98.3 3.9E-07 1.3E-11 73.2 3.9 59 2-64 39-97 (487)
105 4ezg_A Putative uncharacterize 98.3 8E-07 2.7E-11 62.7 5.0 64 2-71 49-112 (197)
106 3o53_A Protein LRIM1, AGAP0063 98.3 4.7E-07 1.6E-11 68.5 3.7 60 2-63 125-185 (317)
107 4fmz_A Internalin; leucine ric 98.3 6.1E-07 2.1E-11 68.4 4.3 70 2-77 248-325 (347)
108 1h6t_A Internalin B; cell adhe 98.3 1.4E-06 4.7E-11 65.4 5.9 57 2-64 117-173 (291)
109 1xeu_A Internalin C; cellular 98.3 1.6E-06 5.5E-11 64.1 6.1 60 2-67 46-105 (263)
110 3cvr_A Invasion plasmid antige 98.2 6.4E-08 2.2E-12 79.3 -1.7 35 26-61 210-244 (571)
111 4glp_A Monocyte differentiatio 98.2 1.8E-06 6.1E-11 65.1 6.0 40 21-60 143-182 (310)
112 1h6u_A Internalin H; cell adhe 98.2 1.6E-06 5.5E-11 65.4 4.9 57 2-64 134-190 (308)
113 4ecn_A Leucine-rich repeat pro 98.2 3.2E-06 1.1E-10 72.4 6.6 66 2-70 758-829 (876)
114 1h6t_A Internalin B; cell adhe 98.1 3.1E-06 1E-10 63.4 5.7 55 2-62 95-149 (291)
115 4eco_A Uncharacterized protein 98.1 1.8E-06 6.1E-11 71.4 4.8 62 2-65 438-506 (636)
116 3rw6_A Nuclear RNA export fact 98.1 1.7E-06 5.7E-11 64.4 4.1 43 20-62 167-211 (267)
117 1h6u_A Internalin H; cell adhe 98.1 4E-06 1.4E-10 63.2 5.6 56 2-63 90-145 (308)
118 4fmz_A Internalin; leucine ric 98.1 1.2E-06 4.2E-11 66.7 2.3 59 2-64 270-328 (347)
119 1ds9_A Outer arm dynein; leuci 98.1 2.1E-08 7.2E-13 71.0 -7.4 73 2-79 75-156 (198)
120 1m9s_A Internalin B; cell inva 98.0 6.3E-06 2.1E-10 68.0 5.6 57 2-64 114-170 (605)
121 4ecn_A Leucine-rich repeat pro 98.0 1.2E-05 4E-10 69.0 6.9 62 2-65 678-746 (876)
122 1m9s_A Internalin B; cell inva 97.9 1.2E-05 4E-10 66.4 6.0 55 2-62 136-190 (605)
123 3bz5_A Internalin-J, INLJ; leu 97.9 2E-05 7E-10 62.7 7.0 61 2-70 196-256 (457)
124 3bz5_A Internalin-J, INLJ; leu 97.9 2.7E-05 9.2E-10 62.0 6.8 55 2-63 47-101 (457)
125 3g06_A SSPH2 (leucine-rich rep 97.9 2.2E-05 7.4E-10 65.0 6.2 64 2-76 226-297 (622)
126 1o6v_A Internalin A; bacterial 97.9 2.4E-05 8.1E-10 62.1 6.1 57 2-64 73-129 (466)
127 3goz_A Leucine-rich repeat-con 97.8 3.1E-06 1.1E-10 65.1 0.0 58 2-61 27-94 (362)
128 3cvr_A Invasion plasmid antige 97.8 5.3E-05 1.8E-09 62.1 7.1 54 2-64 64-117 (571)
129 1ds9_A Outer arm dynein; leuci 97.7 1.9E-06 6.5E-11 60.8 -2.1 60 1-64 97-157 (198)
130 1o6v_A Internalin A; bacterial 97.7 5.5E-05 1.9E-09 60.0 5.5 57 2-64 314-370 (466)
131 1jl5_A Outer protein YOPM; leu 97.6 7.3E-05 2.5E-09 59.4 6.0 39 23-63 131-169 (454)
132 3g06_A SSPH2 (leucine-rich rep 97.6 8.5E-05 2.9E-09 61.5 6.4 54 2-64 45-98 (622)
133 3goz_A Leucine-rich repeat-con 97.6 1.8E-05 6.3E-10 60.8 1.8 64 2-67 3-71 (362)
134 2ca6_A RAN GTPase-activating p 97.5 1.9E-05 6.6E-10 61.1 1.2 43 19-61 240-288 (386)
135 1jl5_A Outer protein YOPM; leu 97.5 0.00016 5.4E-09 57.5 6.0 34 2-39 136-169 (454)
136 3rw6_A Nuclear RNA export fact 97.5 7.4E-05 2.5E-09 55.5 3.7 57 2-61 175-234 (267)
137 4fdw_A Leucine rich hypothetic 97.4 0.00023 8E-09 55.7 6.2 65 2-70 276-345 (401)
138 4fdw_A Leucine rich hypothetic 97.4 0.00033 1.1E-08 54.9 6.1 61 7-70 257-322 (401)
139 2ast_B S-phase kinase-associat 97.2 8.5E-05 2.9E-09 56.0 1.5 56 2-60 75-131 (336)
140 2ast_B S-phase kinase-associat 97.2 7.4E-05 2.5E-09 56.4 0.9 57 2-60 98-156 (336)
141 2ca6_A RAN GTPase-activating p 97.1 0.00014 4.7E-09 56.2 1.6 59 2-62 192-259 (386)
142 4h09_A Hypothetical leucine ri 97.1 0.0008 2.7E-08 51.7 5.7 62 7-71 272-333 (379)
143 3rfe_A Platelet glycoprotein I 97.0 0.00045 1.5E-08 45.6 3.0 34 1-36 35-68 (130)
144 4fs7_A Uncharacterized protein 97.0 0.0015 5.3E-08 50.6 6.4 58 8-69 307-364 (394)
145 4h09_A Hypothetical leucine ri 97.0 0.0016 5.4E-08 50.1 6.4 61 8-71 250-310 (379)
146 3un9_A NLR family member X1; l 96.7 0.0003 1E-08 54.5 0.1 58 2-61 131-197 (372)
147 4gt6_A Cell surface protein; l 96.6 0.0039 1.3E-07 48.3 6.2 59 7-69 297-355 (394)
148 1z7x_W Ribonuclease inhibitor; 96.6 0.0002 6.8E-09 56.3 -1.2 57 2-60 318-383 (461)
149 1z7x_W Ribonuclease inhibitor; 96.4 0.00089 3E-08 52.5 1.3 35 25-59 87-125 (461)
150 3un9_A NLR family member X1; l 96.3 0.00069 2.4E-08 52.5 0.3 59 2-61 106-169 (372)
151 4fs7_A Uncharacterized protein 96.1 0.0063 2.1E-07 47.1 4.6 60 8-71 58-117 (394)
152 3ogk_B Coronatine-insensitive 95.4 0.0028 9.7E-08 51.3 0.3 41 20-60 485-526 (592)
153 1io0_A Tropomodulin; LRR prote 95.3 0.0031 1.1E-07 43.8 0.1 58 2-61 41-107 (185)
154 4gt6_A Cell surface protein; l 95.2 0.039 1.3E-06 42.6 6.2 50 18-69 283-332 (394)
155 2lz0_A Uncharacterized protein 94.4 0.1 3.4E-06 32.6 5.3 55 5-62 4-58 (100)
156 2p1m_B Transport inhibitor res 94.3 0.0048 1.7E-07 49.9 -1.1 39 22-60 455-494 (594)
157 1io0_A Tropomodulin; LRR prote 94.3 0.0057 1.9E-07 42.4 -0.6 58 2-61 70-137 (185)
158 3ogk_B Coronatine-insensitive 93.6 0.0076 2.6E-07 48.7 -1.3 41 21-61 190-234 (592)
159 3e4g_A ATP synthase subunit S, 92.5 0.034 1.2E-06 38.5 0.9 36 23-58 61-96 (176)
160 2ra8_A Uncharacterized protein 92.4 0.026 8.8E-07 43.5 0.2 41 21-61 250-293 (362)
161 2p1m_B Transport inhibitor res 92.2 0.013 4.6E-07 47.2 -1.7 58 2-61 110-170 (594)
162 3e4g_A ATP synthase subunit S, 87.9 0.51 1.8E-05 32.5 3.6 55 2-58 66-125 (176)
163 1pgv_A TMD-1, tropomodulin TMD 85.3 0.21 7.2E-06 35.1 0.5 42 19-60 66-111 (197)
164 1pgv_A TMD-1, tropomodulin TMD 83.9 0.44 1.5E-05 33.5 1.7 57 2-58 75-137 (197)
165 2ra8_A Uncharacterized protein 74.9 0.74 2.5E-05 35.3 0.5 39 21-60 217-265 (362)
166 2lz0_A Uncharacterized protein 70.2 7.6 0.00026 23.8 4.3 39 32-71 5-43 (100)
167 2knc_B Integrin beta-3; transm 28.7 41 0.0014 19.7 2.4 18 145-162 12-29 (79)
No 1
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.87 E-value=4.3e-22 Score=142.35 Aligned_cols=119 Identities=30% Similarity=0.583 Sum_probs=105.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+|+.+++. .|.++++|+.|+|++|+++.+++.+|.++++|+.|++++|+++.+++..|..+. +|
T Consensus 59 L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 59 IDLSNNRISTLSNQ--SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCEeCHh--HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 78999999999998 899999999999999999999999999999999999999999999998888766 89
Q ss_pred CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCC
Q psy10386 74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEG 131 (166)
Q Consensus 74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~ 131 (166)
||.|+|++.|+..|++.... ......|..|.. ++|+.+.+++. .+.|..
T Consensus 137 ~~~C~c~l~~l~~~~~~~~~------~~~~~~C~~P~~---l~g~~l~~~~~~~~~~~~ 186 (193)
T 2wfh_A 137 PLYCDCNMQWLSDWVKSEYK------EPGIARCAGPGE---MADKLLLTTPSKKFTCAA 186 (193)
T ss_dssp CEECSGGGHHHHHHHHHSSC------CCSCCBEEESGG---GTTCBTTTSCGGGCCC--
T ss_pred CeecCCcCHHHHHHHHhccC------CCCCcCcCCchH---HCCCCcccCChHHeeehh
Confidence 99999999999999987432 235689999999 99999999997 666643
No 2
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=9.6e-22 Score=160.92 Aligned_cols=120 Identities=20% Similarity=0.384 Sum_probs=107.2
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC---------
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------- 71 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------- 71 (166)
.|++++|+++++++. .|.++++|+.|+|++|+|+.+++..|.++++|+.|++++|+|+++++..|..+.
T Consensus 498 ~L~Ls~N~L~~l~~~--~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPT--AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp EEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred EEECCCCccCCcChH--HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 389999999999999 999999999999999999999999999999999999999999999999887663
Q ss_pred CCCccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCCcccCC
Q psy10386 72 DNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCE 130 (166)
Q Consensus 72 ~Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~~~~C~ 130 (166)
+|||.|||++.||.+|+++.... +.+..++.|+.|+. ++|+++.++. ..|.
T Consensus 576 ~Np~~C~C~~~~~~~wl~~~~~~---~~~~~~~~C~~P~~---~~g~~l~~~~--~~C~ 626 (635)
T 4g8a_A 576 QNDFACTCEHQSFLQWIKDQRQL---LVEVERMECATPSD---KQGMPVLSLN--ITCQ 626 (635)
T ss_dssp TCCBCCSGGGHHHHHHHHHTTTT---BSCGGGCBBCSSTT---TTTCBGGGCC--CCC-
T ss_pred CCCCcccCCcHHHHHHHHhCCCc---cCCCCCceeCCchH---HCCCEeeeec--cCCC
Confidence 99999999999999999885543 23456799999999 9999999986 4675
No 3
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=1.3e-21 Score=142.44 Aligned_cols=121 Identities=22% Similarity=0.482 Sum_probs=88.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+|+.+++. .|.++++|+.|+|++|+++.+++..|..+++|+.|++++|+++++++..|..+. +|
T Consensus 85 L~Ls~N~l~~l~~~--~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 85 LVLYGNKITELPKS--LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHh--HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 56666666666666 666666666666666666666666666677777777777777777766666554 99
Q ss_pred CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCC
Q psy10386 74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEK 133 (166)
Q Consensus 74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~ 133 (166)
||.|+|++.|+..|++..... .....|..|.. ++|+.+.+++. ++.|..+.
T Consensus 163 ~~~c~c~l~~l~~~l~~~~~~------~~~~~C~~P~~---l~g~~l~~l~~~~~~c~~~~ 214 (220)
T 2v9t_B 163 PFICDCHLKWLADYLHTNPIE------TSGARCTSPRR---LANKRIGQIKSKKFRCSAAA 214 (220)
T ss_dssp CEECSGGGHHHHHHHHHCCCB------CSCCBEEESGG---GTTCBGGGSCGGGCCC----
T ss_pred CcCCCCccHHHHHHHHhCCCC------ccCCCcCCchH---HcCCchhhCCHHHCcCcccc
Confidence 999999999999999875422 35588999999 99999999998 88887543
No 4
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.85 E-value=6.2e-21 Score=136.05 Aligned_cols=121 Identities=30% Similarity=0.602 Sum_probs=103.7
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+|+++.+. .|.++++|+.|++++|+++.+++..|.++++|+.|++++|+++++.+..|..++ +|
T Consensus 59 L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 59 LELKRNQLTGIEPN--AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EECCSSCCCCBCTT--TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred EECCCCCCCCcCHh--HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 78888888888888 888899999999999999988888888889999999999999888888777665 99
Q ss_pred CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCC
Q psy10386 74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEK 133 (166)
Q Consensus 74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~ 133 (166)
+|.|+|.+.|+..|++..... .+...|..|.. ++|..+.+++. ++.|..+.
T Consensus 137 ~l~c~c~l~~~~~~l~~~~~~------~~~~~C~~P~~---l~~~~l~~l~~~~~~C~~~~ 188 (192)
T 1w8a_A 137 PFNCNCHLAWFAEWLRKKSLN------GGAARCGAPSK---VRDVQIKDLPHSEFKCSSEN 188 (192)
T ss_dssp CBCCSGGGHHHHHHHHHHCCS------GGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC-
T ss_pred CccCcCcchHHHHHHHHcCCC------CCCCCCCCChH---HcCCChhhCcHhhcCcCCCC
Confidence 999999999999999875332 34588999999 99999999998 88897543
No 5
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=135.96 Aligned_cols=121 Identities=28% Similarity=0.494 Sum_probs=88.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++++.+..|..+. +|
T Consensus 86 L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 86 ILLTSNRLENVQHK--MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp EECCSSCCCCCCGG--GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EECCCCccCccCHh--HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 56666666666666 666666666666666666666666666667777777777777777666666554 89
Q ss_pred CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCC
Q psy10386 74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEK 133 (166)
Q Consensus 74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~ 133 (166)
+|.|+|++.|+..|++..... .....|..|.. ++|..+.+++. +..|..++
T Consensus 164 ~l~c~c~l~~l~~~~~~~~~~------~~~~~C~~P~~---l~g~~l~~l~~~~~~~~~~~ 215 (220)
T 2v70_A 164 PFNCNCYLAWLGEWLRKKRIV------TGNPRCQKPYF---LKEIPIQDVAIQDFTCDDAH 215 (220)
T ss_dssp CEECSGGGHHHHHHHHHSCCB------CCCCEEEESGG---GTTEEGGGSCGGGCCCCC--
T ss_pred CCcCCCchHHHHHHHHhcCcc------ccCCccCCChH---HCCCChhhCCHHHccccccc
Confidence 999999999999999864321 34579999999 99999999997 66775443
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=143.92 Aligned_cols=124 Identities=22% Similarity=0.447 Sum_probs=105.9
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++.+.+. .|.++++|+.|++++|+++.+++.+|..+++|+.|++++|+++.+++..|..+. +|
T Consensus 212 L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 212 LDLSGNHLSAIRPG--SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp EECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred EECCCCccCccChh--hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 78999999999998 999999999999999999999999999999999999999999999998887766 99
Q ss_pred CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCCC
Q psy10386 74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEKG 134 (166)
Q Consensus 74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~~ 134 (166)
||.|||++.|+..|++...... ......|..|.. ++|+.+.+++. .+.|..|..
T Consensus 290 p~~CdC~l~~l~~~~~~~~~~~----~~~~~~C~~P~~---l~g~~l~~l~~~~~~C~~P~i 344 (440)
T 3zyj_A 290 PWNCNCDILWLSWWIKDMAPSN----TACCARCNTPPN---LKGRYIGELDQNYFTCYAPVI 344 (440)
T ss_dssp CEECSSTTHHHHHHHHTTSCSS----CSCCCBEEESTT---TTTCBCC----CCSCCCCCCE
T ss_pred CccCCCCchHHHHHHHhccccC----CccccCCCChhH---hcCccHhHhhhhhccCCCCcc
Confidence 9999999999999998753221 234588999999 99999998887 778976543
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=4.6e-19 Score=141.10 Aligned_cols=125 Identities=23% Similarity=0.383 Sum_probs=108.7
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++++.+. .|.++++|+.|++++|+++.+++..|.++++|+.|++++|+++++++..|..++ +|
T Consensus 223 L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 223 LEMSGNHFPEIRPG--SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp EECTTSCCSEECGG--GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred EECcCCcCcccCcc--cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 78999999999888 899999999999999999999999999999999999999999999998887766 99
Q ss_pred CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCCCC
Q psy10386 74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEKGG 135 (166)
Q Consensus 74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~~~ 135 (166)
||.|||++.|+..|++...... ......|..|.. ++|+.+.+++. ...|..|...
T Consensus 301 p~~CdC~~~~l~~~l~~~~~~~----~~~~~~C~~P~~---l~g~~l~~~~~~~~~C~~P~i~ 356 (452)
T 3zyi_A 301 PWNCDCDILWLAWWLREYIPTN----STCCGRCHAPMH---MRGRYLVEVDQASFQCSAPFIM 356 (452)
T ss_dssp CEECSTTTHHHHHHHHHHC-------CCSSCBEEESTT---TTTCBTTSCCGGGCCCCCCCCS
T ss_pred CcCCCCCchHHHHHHHHhCccC----CccCcEeCCchH---hccchhhccchhhhcccCcccc
Confidence 9999999999999998753221 234578999999 99999999887 7789766443
No 8
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.79 E-value=6.4e-19 Score=123.38 Aligned_cols=106 Identities=24% Similarity=0.473 Sum_probs=92.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+|+++++. .|.++++|+.|+|++|+|+.++++.|..+++|++|++++|+|+++++..|..+. +|
T Consensus 35 L~L~~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 35 LYLYDNQITKLEPG--VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEcCCCcCCccChh--hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 79999999999998 999999999999999999999999999999999999999999999998888776 99
Q ss_pred CccccCC-cHHHHHHHHhccCCcchh--cccCCceecCC
Q psy10386 74 PLVCTCD-LMWYKEWSTSLGEKEDEQ--MSRKRTVCTLG 109 (166)
Q Consensus 74 p~~C~C~-l~~l~~~~~~~~~~~~~~--~~~~~~~C~~p 109 (166)
||.|+|. +.|+..|++......... .+.+...|..+
T Consensus 113 ~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~ 151 (170)
T 3g39_A 113 PWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGT 151 (170)
T ss_dssp CBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-
T ss_pred CCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCC
Confidence 9999995 999999999865443211 23557888765
No 9
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.76 E-value=6.2e-18 Score=118.85 Aligned_cols=107 Identities=25% Similarity=0.467 Sum_probs=91.5
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------C
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~ 72 (166)
.|++++|+|+++++. .|.++++|+.|+|++|+|+.+++..|..+++|+.|++++|+|+.+++..|..+. +
T Consensus 37 ~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 37 RLWLNNNQITKLEPG--VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp EEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred EEEeCCCCccccCHH--HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 389999999999998 999999999999999999999999999999999999999999999998888776 9
Q ss_pred CCccccCC-cHHHHHHHHhccCCcc-----hhcccCCceecCC
Q psy10386 73 NPLVCTCD-LMWYKEWSTSLGEKED-----EQMSRKRTVCTLG 109 (166)
Q Consensus 73 Np~~C~C~-l~~l~~~~~~~~~~~~-----~~~~~~~~~C~~p 109 (166)
|+|.|+|. +.|+..|++....... .+.+.+...|..+
T Consensus 115 N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 157 (174)
T 2r9u_A 115 NPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAGT 157 (174)
T ss_dssp SCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTTT
T ss_pred CCcccccccHHHHHHHHHhcccccccccccccCCcccCEECCC
Confidence 99999996 9999999988654321 1113456677654
No 10
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.76 E-value=3.9e-18 Score=131.27 Aligned_cols=104 Identities=25% Similarity=0.466 Sum_probs=92.8
Q ss_pred EEecC-CCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-------CC
Q psy10386 2 IEIWG-GQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------DN 73 (166)
Q Consensus 2 L~ls~-N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-------~N 73 (166)
|+|++ |+|+.+++. .|.++++|+.|+|++|+|+.+++.+|..+++|+.|+|++|+|+++++..|..+. +|
T Consensus 36 L~l~~~n~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 36 LYIENQQHLQHLELR--DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp EECCSCSSCCEECGG--GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred EEccCCCCCCCcChh--HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence 89996 999999998 999999999999999999999999999999999999999999999999988754 99
Q ss_pred CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCC
Q psy10386 74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSS 111 (166)
Q Consensus 74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~ 111 (166)
+|.|+|++.||..|++..... .+.+.+.|..|..
T Consensus 114 ~~~c~c~l~~~~~~~~~~~~~----l~~~~~~C~~~~~ 147 (347)
T 2ifg_A 114 PLHCSCALRWLQRWEEEGLGG----VPEQKLQCHGQGP 147 (347)
T ss_dssp CCCCCGGGHHHHHHHHTTCSS----CGGGCCCCSSSSC
T ss_pred CccCCCccHHHHHHHHhCccc----ccccCCCCCCChH
Confidence 999999999999999875332 1346788987764
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=2.1e-18 Score=146.74 Aligned_cols=120 Identities=20% Similarity=0.334 Sum_probs=85.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-----CCCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-----DNPLV 76 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-----~Np~~ 76 (166)
|+|++|+++++++. .|.++++|+.|+|++|+++.+++..|. ++|+.|++++|+++++++..|..+. +|||.
T Consensus 485 L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 485 LYLNHNYLNSLPPG--VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCHHHHTTCCTT--SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCC
T ss_pred EECCCCcccccChh--HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCcc
Confidence 45666666666666 666677777777777777776666554 6677777777777777776666666 89999
Q ss_pred ccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCCcccCCC
Q psy10386 77 CTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCEG 131 (166)
Q Consensus 77 C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~~~~C~~ 131 (166)
|+|++.||..|+....... .....+..|..|.. ++|.++.+++ ...|..
T Consensus 561 C~c~~~~f~~~~~~~~~~~--~~~~~~~~C~~p~~---~~g~~l~~~~-~~~C~~ 609 (844)
T 3j0a_A 561 CECELSTFINWLNHTNVTI--AGPPADIYCVYPDS---FSGVSLFSLS-TEGCDE 609 (844)
T ss_dssp CSSSCCSHHHHHHHTTTTT--CCCGGGCCCSSCSS---SCSCCTTTCC-CCCC--
T ss_pred cccccHHHHHHHHhcCccc--ccccccCccCCchh---hCCCccccCc-cccCCc
Confidence 9999999999998643322 12345689999999 8998888877 357764
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=3.7e-17 Score=123.47 Aligned_cols=90 Identities=24% Similarity=0.499 Sum_probs=50.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-------CCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------DNP 74 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-------~Np 74 (166)
|++++|+++.++++ .|.++++|+.|++++|+++.++++.|..+++|+.|++++|+++.++...|.... +||
T Consensus 129 L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 129 LYLKGNELKTLPPG--LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred EECCCCCCCccChh--hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 34444444444444 444444444444444444444444444444444444444444444444433322 899
Q ss_pred ccccCCcHHHHHHHHhccC
Q psy10386 75 LVCTCDLMWYKEWSTSLGE 93 (166)
Q Consensus 75 ~~C~C~l~~l~~~~~~~~~ 93 (166)
|.|+|++.|+..|++++..
T Consensus 207 ~~C~c~~~~l~~wl~~~~~ 225 (290)
T 1p9a_G 207 WLCNCEILYFRRWLQDNAE 225 (290)
T ss_dssp BCCSGGGHHHHHHHHHTGG
T ss_pred ccCcCccHHHHHHHHhCcc
Confidence 9999999999999998643
No 13
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.71 E-value=2.7e-17 Score=110.43 Aligned_cols=102 Identities=25% Similarity=0.434 Sum_probs=81.5
Q ss_pred EEecCCCCc--eeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCCCCCccccC
Q psy10386 2 IEIWGGQLS--SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC 79 (166)
Q Consensus 2 L~ls~N~l~--~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~~Np~~C~C 79 (166)
++-+++.++ .+|.+ . -++|+.|+|++|+|+.++++.|..+++|+.|+|+ +|||.|||
T Consensus 13 v~Cs~~~L~~~~vP~~--l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~----------------~NP~~CdC 71 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTA--F---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLG----------------ANPWRCDC 71 (130)
T ss_dssp EECCSSCCCTTTSCSC--C---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC----------------SSCCBCSG
T ss_pred EEeCCCCCccccCCCC--C---CcCCCEEECCCCcCCccChhhhhhccccCEEEec----------------CCCeeccC
Confidence 456777777 77765 2 1468888999999998888888888888888777 78999999
Q ss_pred CcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-ccc--CCC
Q psy10386 80 DLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLV--CEG 131 (166)
Q Consensus 80 ~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~--C~~ 131 (166)
++.||..|++....... ..++.|..|.. ++|+.+.++.. ++. |..
T Consensus 72 ~l~~l~~wl~~~~~~~~----~~~~~C~~P~~---l~g~~l~~l~~~~l~c~C~~ 119 (130)
T 3rfe_A 72 RLVPLRAWLAGRPERAP----YRDLRCVAPPA---LRGRLLPYLAEDELRAACAP 119 (130)
T ss_dssp GGHHHHHHHHTSSCSGG----GTTCBCCBSTT---TTTCBGGGCCHHHHHHTTCC
T ss_pred ccHHHHHHHHhCccccc----ccCcEeCcChH---HcCCCcccCCHHHhhCcCCC
Confidence 99999999997643222 46799999999 99999999997 554 544
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=7.7e-17 Score=121.91 Aligned_cols=115 Identities=20% Similarity=0.350 Sum_probs=99.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC---------C
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE---------D 72 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~---------~ 72 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|++.+..+..+..+. +
T Consensus 180 L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 180 LDLSQCQLEQLSPT--AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp EECTTSCCCEECTT--TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred EECCCCCcCCcCHH--HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 78999999999888 899999999999999999999988899999999999999999988887776652 9
Q ss_pred CCccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCC
Q psy10386 73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLP 124 (166)
Q Consensus 73 Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~ 124 (166)
|+|.|+|++.|+.+|++..... ..+.+...|..|.. ++|.++.++.
T Consensus 258 N~~~~~c~~~~~~~~l~~~~~~---~~~~~~~~C~~p~~---~~g~~~~~~~ 303 (306)
T 2z66_A 258 NDFACTCEHQSFLQWIKDQRQL---LVEVERMECATPSD---KQGMPVLSLN 303 (306)
T ss_dssp CCEECSGGGHHHHHHHHHTGGG---BSCGGGCBEEESGG---GTTCBGGGCC
T ss_pred CCeecccChHHHHHHHHhhhhh---hccccccccCCchh---hCCceeeeec
Confidence 9999999999999999975432 23457899999999 9998887765
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=5.9e-17 Score=121.48 Aligned_cols=117 Identities=30% Similarity=0.501 Sum_probs=87.6
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+.+..|..+++|+.|++++|.++.+++..|..++ +|
T Consensus 158 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 158 LFLHGNRISSVPER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred EECCCCcccccCHH--HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 56666777666666 666677777777777777766666676777777777777777777666555544 99
Q ss_pred CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cc-cC
Q psy10386 74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QL-VC 129 (166)
Q Consensus 74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~-~C 129 (166)
+|.|+|.+.|+..|++.... ..+...|..|.. ++|..+.++.. ++ .|
T Consensus 236 ~~~c~~~~~~~~~~l~~~~~------~~~~~~c~~p~~---l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 236 PWVCDCRARPLWAWLQKFRG------SSSEVPCSLPQR---LAGRDLKRLAANDLQGC 284 (285)
T ss_dssp CEECSGGGHHHHHHHHHCCS------EECCCBEEESGG---GTTCBGGGSCGGGSCCC
T ss_pred CccCCCCcHHHHHHHHhccc------ccCccccCCchH---hCCcChhhcCHHHhccC
Confidence 99999999999999988542 246799999999 99999998886 44 35
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=4.3e-18 Score=141.21 Aligned_cols=117 Identities=24% Similarity=0.410 Sum_probs=74.9
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcccc----CCCC-----C
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF----SGLE-----D 72 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~----~~l~-----~ 72 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++++++..| ..+. +
T Consensus 541 L~L~~N~l~~i~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 541 LNLESNGFDEIPVE--VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred EECCCCCCCCCCHH--HcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence 67888888888888 88899999999999999999988888888999999999999988888754 3443 9
Q ss_pred CCccccCCc-HHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC
Q psy10386 73 NPLVCTCDL-MWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK 125 (166)
Q Consensus 73 Np~~C~C~l-~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~ 125 (166)
|||.|+|++ .||..|++........ ...++.|..|.. ++|+.+.+++.
T Consensus 619 N~~~c~c~~~~~~~~~~~~~~~~~~~--~~~~~~C~~p~~---~~g~~l~~~~~ 667 (680)
T 1ziw_A 619 NPFDCTCESIAWFVNWINETHTNIPE--LSSHYLCNTPPH---YHGFPVRLFDT 667 (680)
T ss_dssp CCCCBCCCCCSSEECCSSCC----------------------------------
T ss_pred CCcccCCccHHHHHHHHHhcCccccc--ccCCcEECCchH---HCCCcccccCh
Confidence 999999996 9999998654322111 135689999999 99999999986
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=6e-17 Score=132.67 Aligned_cols=118 Identities=20% Similarity=0.330 Sum_probs=85.6
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC----CC-----C
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG----LE-----D 72 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~----l~-----~ 72 (166)
|++++|+++++++. .|.++++|+.|++++|+++.+.+..|..+++|+.|++++|++++++.. +.. +. +
T Consensus 478 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 478 LDLSKCQLEQISWG--VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTN 554 (606)
T ss_dssp EECTTSCCCEECTT--TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCS
T ss_pred EECCCCcCCccChh--hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccC
Confidence 78999999999888 899999999999999999999888899999999999999999988876 333 22 9
Q ss_pred CCccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCCcccC
Q psy10386 73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVC 129 (166)
Q Consensus 73 Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~~~~C 129 (166)
|||.|+|++.|+.+|++..... +.+...+.|..|.. ++|..+.++.. ..|
T Consensus 555 N~~~c~c~~~~~~~~l~~~~~~---~~~~~~~~C~~p~~---~~~~~l~~~~~-~~c 604 (606)
T 3vq2_A 555 NSVACICEHQKFLQWVKEQKQF---LVNVEQMTCATPVE---MNTSLVLDFNN-STC 604 (606)
T ss_dssp CCCCCSSTTHHHHTTTTTSSSS---BSSGGGCCCC----------------------
T ss_pred CCcccCCccHHHHHHHHcCccc---ccCCccceeCCChH---hCCCEeeeccc-ccC
Confidence 9999999999999999875432 23456799999999 99999988873 345
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=5.5e-16 Score=114.40 Aligned_cols=90 Identities=30% Similarity=0.547 Sum_probs=73.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++++++..|..+. +|
T Consensus 112 L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 112 LYLGGNQLKSLPSG--VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEcCCCcCCCcChh--HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 67777888777777 777788888888888888888877787888888888888888888877776655 99
Q ss_pred Ccccc-CCcHHHHHHHHhccC
Q psy10386 74 PLVCT-CDLMWYKEWSTSLGE 93 (166)
Q Consensus 74 p~~C~-C~l~~l~~~~~~~~~ 93 (166)
+|.|+ |++.|+..|++....
T Consensus 190 ~~~c~~~~~~~l~~~~~~~~~ 210 (251)
T 3m19_A 190 QFDCSRCEILYLSQWIRENSN 210 (251)
T ss_dssp CBCTTSTTHHHHHHHHHHSGG
T ss_pred ceeCCccccHHHHHHHHhccc
Confidence 99999 999999999997644
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.66 E-value=1e-16 Score=131.32 Aligned_cols=114 Identities=29% Similarity=0.451 Sum_probs=92.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++++++. .|.++++|+.|++++|+++.+.+..|..+++| .|++++|+++++++..|..++ +|
T Consensus 481 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 481 LVLSFCDLSSIDQH--AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp EECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred EECCCCccCccChh--hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 67788888888777 78888888888888888888888888888888 888888888887776654433 99
Q ss_pred CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCC
Q psy10386 74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLP 124 (166)
Q Consensus 74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~ 124 (166)
||.|+|...|+.+|++..... +.+.....|..|.. ++|+++.+++
T Consensus 558 ~~~c~c~~~~~~~w~~~~~~~---~~~~~~~~C~~p~~---~~g~~l~~~~ 602 (606)
T 3t6q_A 558 PLDCTCSNIYFLEWYKENMQK---LEDTEDTLCENPPL---LRGVRLSDVT 602 (606)
T ss_dssp CEECSGGGHHHHHHHHHCGGG---EECGGGCBEEESGG---GTTCBGGGCC
T ss_pred CccccCCcHHHHHHHHhCccc---ccCCCCCeeCCchH---hCCCeeeeee
Confidence 999999999999999975332 23456799999999 9999999887
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.3e-15 Score=113.59 Aligned_cols=120 Identities=26% Similarity=0.480 Sum_probs=87.9
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++.+++..|..++ +|
T Consensus 138 L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 138 LSLGYNELQSLPKG--VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHh--HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 67777777777777 777888888888888888888877788888888888888888888877776655 99
Q ss_pred CccccCC-cHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC---cccCCCC
Q psy10386 74 PLVCTCD-LMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK---QLVCEGE 132 (166)
Q Consensus 74 p~~C~C~-l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~---~~~C~~~ 132 (166)
||.|+|+ +.|+..|++..... .+...+...|..+ |+.+.++.. ...|..|
T Consensus 216 ~~~c~c~~~~~~~~~l~~~~~~--~~~~~~~~~C~~~-------~~~~~~~~~~~~~~~C~~p 269 (270)
T 2o6q_A 216 PWDCTCNGIIYMAKWLKKKADE--GLGGVDTAGCEKG-------GKAVLEITEKDAASDCVSP 269 (270)
T ss_dssp CBCCSSSSSHHHHHHHHHHHHT--TCSSTTCCBBSSS-------CSBGGGCCTTTTCSCCCSC
T ss_pred CeeCCCccHHHHHHHHHhhccc--cccCccccccCCC-------CeEeEEecchhhcccCCCC
Confidence 9999997 88999999875422 1223456778643 445666654 2467543
No 21
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=1.5e-15 Score=110.81 Aligned_cols=106 Identities=25% Similarity=0.386 Sum_probs=63.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC------------------
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD------------------ 63 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~------------------ 63 (166)
|++++|+|+.+++. .|.++++|+.|+|++|+++.+++..|..+++|+.|++++|+++.++
T Consensus 69 L~L~~N~l~~i~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 69 LYLGSNQLGALPVG--VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC
T ss_pred EECCCCCCCCcChh--hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc
Confidence 55666666666665 5666666666666666666666655554444444444444444333
Q ss_pred -----ccccCCCC--------CCCccccCC-cHHHHHHHHhccCCcc-----hhcccCCceecCC
Q psy10386 64 -----PAAFSGLE--------DNPLVCTCD-LMWYKEWSTSLGEKED-----EQMSRKRTVCTLG 109 (166)
Q Consensus 64 -----~~~~~~l~--------~Np~~C~C~-l~~l~~~~~~~~~~~~-----~~~~~~~~~C~~p 109 (166)
+..|..+. +|||.|+|. +.|+..|+........ .+.+.+...|..+
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~ 211 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT 211 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT
T ss_pred CCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcCccCCC
Confidence 22222222 999999995 9999999987543221 1234556778765
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.64 E-value=2.7e-16 Score=125.60 Aligned_cols=120 Identities=24% Similarity=0.483 Sum_probs=100.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+.+..|..+++|+.|++++|+++.+++..|..++ +|
T Consensus 253 L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 253 LNLSYNPISTIEGS--MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp EECCSSCCCEECTT--SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred eECCCCcCCccChh--hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 78899999999988 899999999999999999999999999999999999999999999998887665 99
Q ss_pred CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-----cccCCCC
Q psy10386 74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-----QLVCEGE 132 (166)
Q Consensus 74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-----~~~C~~~ 132 (166)
||.|+|.+.|+.+|.... ....+...|..|.. ++|..+.+++. .+.|..|
T Consensus 331 ~l~c~c~~~~~~~~~~~~------~~~~~~~~C~~p~~---~~g~~l~~~~~~~~~~~~~C~~P 385 (477)
T 2id5_A 331 PLACDCRLLWVFRRRWRL------NFNRQQPTCATPEF---VQGKEFKDFPDVLLPNYFTCRRA 385 (477)
T ss_dssp CEECSGGGHHHHTTTTSS------CCTTCCCBEEESGG---GTTCBGGGSCSSCCTTSSCCEEE
T ss_pred CccCccchHhHHhhhhcc------ccCccCceeCCchH---HcCCchhhCccccccceeEeccc
Confidence 999999999988764321 12346789999998 89988877753 3466543
No 23
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=2.9e-15 Score=104.94 Aligned_cols=103 Identities=27% Similarity=0.504 Sum_probs=80.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++..|..+. +|
T Consensus 57 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 57 LSLSQNQIQSLPDG--VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcceEeChh--HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 67788888888777 778888888888888888888887777888888888888888888877766554 99
Q ss_pred CccccCC-cHHHHHHHHhccCCcchhcccCCceecCCCC
Q psy10386 74 PLVCTCD-LMWYKEWSTSLGEKEDEQMSRKRTVCTLGSS 111 (166)
Q Consensus 74 p~~C~C~-l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~ 111 (166)
+|.|+|. +.|+..|+....... .....|..+..
T Consensus 135 ~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~C~~~~~ 168 (177)
T 2o6r_A 135 PWDCSCPRIDYLSRWLNKNSQKE-----QGSAKCSGSGK 168 (177)
T ss_dssp CBCCCHHHHHHHHHHHHHTGGGE-----ESCCBBTTTCC
T ss_pred CeeccCccHHHHHHHHhhCcccc-----ccCcEeCCCCc
Confidence 9999997 899999998754322 25688876543
No 24
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=1.5e-15 Score=117.70 Aligned_cols=106 Identities=21% Similarity=0.347 Sum_probs=62.6
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC------------
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG------------ 69 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~------------ 69 (166)
|+|++|+|+.+++. .|.++++|+.|+|++|+++.+++..|..+++|+.|++++|+++.++...|.+
T Consensus 93 L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 93 LDLSSNHLHTLDEF--LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred EECCCCcCCcCCHH--HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 45555555555555 5555555555555555555555555555555555555555555555544421
Q ss_pred ---------------C----------CCCCccccCCcHHH-HHHHHhccCCcchhcccCCceecCCCC
Q psy10386 70 ---------------L----------EDNPLVCTCDLMWY-KEWSTSLGEKEDEQMSRKRTVCTLGSS 111 (166)
Q Consensus 70 ---------------l----------~~Np~~C~C~l~~l-~~~~~~~~~~~~~~~~~~~~~C~~p~~ 111 (166)
+ .+|||.|||++.|+ ..|+........ .......|..|..
T Consensus 171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~--~~~~~~~C~~p~~ 236 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVM--DFQEDLYCMHSKK 236 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHH--TTGGGCEEESSSC
T ss_pred CCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchh--ccCcCCEeCCChH
Confidence 1 18999999999885 668765321111 1135689998876
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.51 E-value=7e-14 Score=110.73 Aligned_cols=103 Identities=27% Similarity=0.483 Sum_probs=81.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++++++. .|.++++|+.|++++|+++.+.+..|..+++|+.|++++|+++++++..|..++ +|
T Consensus 328 L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 328 LNLSQNFLGSIDSR--MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp EECCSSCCCEECGG--GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCCcChh--HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 67788888888777 788888888888888888888777788888888888888888888887776655 99
Q ss_pred CccccCC-cHHHHHHHHhccCCcchhcccCCceecCCCC
Q psy10386 74 PLVCTCD-LMWYKEWSTSLGEKEDEQMSRKRTVCTLGSS 111 (166)
Q Consensus 74 p~~C~C~-l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~ 111 (166)
++.|+|. +.|+..|++...... .....|..+..
T Consensus 406 ~l~~~~~~~~~l~~~l~~~~~~~-----~~~~~c~~~~~ 439 (455)
T 3v47_A 406 PWDCSCPRIDYLSRWLNKNSQKE-----QGSAKCSGSGK 439 (455)
T ss_dssp CBCCCTTTTHHHHHHHHHTTTTE-----ESCCBBTTTCC
T ss_pred CcccCCCcchHHHHHHHhCccce-----eeeeeecCCCc
Confidence 9999997 899999998754432 34577877654
No 26
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=1.1e-12 Score=93.83 Aligned_cols=90 Identities=32% Similarity=0.550 Sum_probs=68.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++.+++..|..+. +|
T Consensus 81 L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 81 LNLSTNQLQSLPNG--VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EECCCCcCCccCHh--HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 66777777777776 677777777777777777777777777777788888888877777776666554 89
Q ss_pred CccccCC-cHHHHHHHHhccC
Q psy10386 74 PLVCTCD-LMWYKEWSTSLGE 93 (166)
Q Consensus 74 p~~C~C~-l~~l~~~~~~~~~ 93 (166)
+|.|+|. +.++..|......
T Consensus 159 ~~~~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 159 PWDCTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CBCCCTTTTHHHHHHHHHCTT
T ss_pred CeecCCCCHHHHHHHHHhCCc
Confidence 9999996 7888888877554
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.41 E-value=4.4e-13 Score=107.94 Aligned_cols=83 Identities=25% Similarity=0.520 Sum_probs=67.1
Q ss_pred ccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CCCccccCCcHHH-HHHHHhccC
Q psy10386 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DNPLVCTCDLMWY-KEWSTSLGE 93 (166)
Q Consensus 23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~Np~~C~C~l~~l-~~~~~~~~~ 93 (166)
++|+.|++++|+++.++...+ .+++|+.|++++|+++.++...|..++ +|||.|+|.+.|+ ..|+++...
T Consensus 421 ~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~ 499 (520)
T 2z7x_B 421 PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 499 (520)
T ss_dssp TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTT
T ss_pred ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhccc
Confidence 567777777777777777665 889999999999999999888676655 9999999999999 999987543
Q ss_pred CcchhcccCCceecCCCC
Q psy10386 94 KEDEQMSRKRTVCTLGSS 111 (166)
Q Consensus 94 ~~~~~~~~~~~~C~~p~~ 111 (166)
. ...+..|..|..
T Consensus 500 ~-----~~~~~~C~~p~~ 512 (520)
T 2z7x_B 500 K-----EQGSAKCSGSGK 512 (520)
T ss_dssp T-----EESCCBBTTTCC
T ss_pred c-----CCCCCCcCCccc
Confidence 2 246789999865
No 28
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=6.1e-13 Score=99.10 Aligned_cols=102 Identities=25% Similarity=0.457 Sum_probs=67.2
Q ss_pred EEecCCCCceee-CCccccCCCccCceeeccCCcCCccC----------------------------ccccCCCCCCCEE
Q psy10386 2 IEIWGGQLSSIF-EKVATSGGLHNLDSLVLAHNQLRTIP----------------------------PRVFAHLPLLNSL 52 (166)
Q Consensus 2 L~ls~N~l~~~~-~~~~~f~~l~~L~~L~ls~N~l~~i~----------------------------~~~f~~l~~L~~l 52 (166)
|++++|+++.+. +. .|.++++|+.|++++|+++.++ +..|.. .+|+.|
T Consensus 129 L~l~~n~l~~~~l~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L 205 (276)
T 2z62_A 129 LNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKEL 205 (276)
T ss_dssp EECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEE
T ss_pred EECcCCccceecCch--hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEE
Confidence 455555555533 33 4555555555555555555544 444422 367888
Q ss_pred eccCCcccccCccccCCCC--------CCCccccCC-cHHHHHHHHhccCCcchhcccCCceecCCCC
Q psy10386 53 ELDGNHIHTVDPAAFSGLE--------DNPLVCTCD-LMWYKEWSTSLGEKEDEQMSRKRTVCTLGSS 111 (166)
Q Consensus 53 ~l~~N~l~~~~~~~~~~l~--------~Np~~C~C~-l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~ 111 (166)
++++|+++++++..|..++ +|||.|+|. +.|+..|++..... ......|..|..
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~-----~~~~~~C~~~~~ 268 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK-----EQGSAKCSGSGK 268 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHTGGG-----BCSCCBBTTTCC
T ss_pred ECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHhcccc-----cCCCceeeCCCC
Confidence 8888888888887776665 999999996 89999999875432 234578887654
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.39 E-value=1.3e-12 Score=106.34 Aligned_cols=85 Identities=27% Similarity=0.491 Sum_probs=64.4
Q ss_pred ccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CCCccccCCcHHHHH-HHHhccC
Q psy10386 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DNPLVCTCDLMWYKE-WSTSLGE 93 (166)
Q Consensus 23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~Np~~C~C~l~~l~~-~~~~~~~ 93 (166)
++|+.|++++|+++.++++.+ .+++|+.|++++|+++++++..|..++ +|||.|+|.+.|+.+ |.+....
T Consensus 450 ~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~ 528 (562)
T 3a79_B 450 PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSG 528 (562)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTT
T ss_pred CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCC
Confidence 577888888888888888776 889999999999999999988676665 999999999999966 8776443
Q ss_pred Ccc---hhcccCCceecC
Q psy10386 94 KED---EQMSRKRTVCTL 108 (166)
Q Consensus 94 ~~~---~~~~~~~~~C~~ 108 (166)
... ...+.....|..
T Consensus 529 ~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 529 VVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp TEECSSSSBCSSSSCBSS
T ss_pred cccccccCCCCCCCccCC
Confidence 221 001234567765
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.37 E-value=1.8e-12 Score=105.20 Aligned_cols=103 Identities=25% Similarity=0.473 Sum_probs=83.2
Q ss_pred EEecCCCCc-eeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------C
Q psy10386 2 IEIWGGQLS-SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72 (166)
Q Consensus 2 L~ls~N~l~-~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~ 72 (166)
|++++|+++ +..+. .|.++++|+.|++++|+++.+.+..|..+++|+.|++++|+++++++..|..++ +
T Consensus 450 L~l~~n~l~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 450 LKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp EECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EECcCCcCccccchh--hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence 678888886 34445 788899999999999999999888899999999999999999999888887666 9
Q ss_pred CCccccCCcHHHH-HHHHhccCCcchhcccCCceecCCCC
Q psy10386 73 NPLVCTCDLMWYK-EWSTSLGEKEDEQMSRKRTVCTLGSS 111 (166)
Q Consensus 73 Np~~C~C~l~~l~-~~~~~~~~~~~~~~~~~~~~C~~p~~ 111 (166)
|+|.|+|...|+. .|++....... .. ..|..|..
T Consensus 528 N~~~~~~~~~~~~~~wl~~~~~~~~----~~-~~C~~~~~ 562 (570)
T 2z63_A 528 NPWDCSCPRIDYLSRWLNKNSQKEQ----GS-AKCSGSGK 562 (570)
T ss_dssp SCBCCCTTTTHHHHHHHHHTGGGEE----SC-CBBTTTCC
T ss_pred CcccCCCcchHHHHHHHHhccccCC----Cc-hhhCCCCC
Confidence 9999999988877 99988543322 12 29988755
No 31
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.34 E-value=5.2e-12 Score=94.10 Aligned_cols=90 Identities=33% Similarity=0.546 Sum_probs=67.6
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++++++..|..++ +|
T Consensus 138 L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 138 LNLAHNQLQSLPKG--VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCccCHH--HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 56777777777776 677777777777777777777777777777777777777777777776666554 89
Q ss_pred CccccCC-cHHHHHHHHhccC
Q psy10386 74 PLVCTCD-LMWYKEWSTSLGE 93 (166)
Q Consensus 74 p~~C~C~-l~~l~~~~~~~~~ 93 (166)
+|.|+|. +.++..|......
T Consensus 216 ~~~~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 216 PWDCTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp CBCCCTTTTHHHHHHHHHTGG
T ss_pred CccccCcHHHHHHHHHHhCCC
Confidence 9999996 7888888776543
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.28 E-value=7.4e-12 Score=101.25 Aligned_cols=84 Identities=24% Similarity=0.528 Sum_probs=69.5
Q ss_pred CCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CCCccccCC-cHHHHHHHHhc
Q psy10386 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DNPLVCTCD-LMWYKEWSTSL 91 (166)
Q Consensus 21 ~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~Np~~C~C~-l~~l~~~~~~~ 91 (166)
++++|+.|++++|+++.++.. ..+++|+.|++++|+++++++..|..+. +|||.|+|. +.|+..|++..
T Consensus 449 ~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~ 526 (549)
T 2z81_A 449 FLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 526 (549)
T ss_dssp CCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHC
T ss_pred cCChhcEEECCCCccCcCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhc
Confidence 678999999999999998874 4689999999999999999988776665 999999998 68888999875
Q ss_pred cCCcchhcccCCceecCCCC
Q psy10386 92 GEKEDEQMSRKRTVCTLGSS 111 (166)
Q Consensus 92 ~~~~~~~~~~~~~~C~~p~~ 111 (166)
... ...+..|..|..
T Consensus 527 ~~~-----~~~~~~C~~~~~ 541 (549)
T 2z81_A 527 SQK-----EQGSAKCSGSGK 541 (549)
T ss_dssp TTT-----EESCCBBTTTCC
T ss_pred ccc-----cCCCCeECCCCc
Confidence 433 246788987643
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=99.35 Aligned_cols=64 Identities=23% Similarity=0.507 Sum_probs=52.6
Q ss_pred cCCCCCCCEEeccCCcccccCccccCCCC--------CCCccccCC-cHHHHHHHHhccCCcchhcccCCceecCCCC
Q psy10386 43 FAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DNPLVCTCD-LMWYKEWSTSLGEKEDEQMSRKRTVCTLGSS 111 (166)
Q Consensus 43 f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~Np~~C~C~-l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~ 111 (166)
+..+++|+.|++++|+++.++...|..++ +|+|.|+|. +.|+..|++...... .+...|..|..
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~C~~p~~ 345 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE-----QGSAKCSGSGK 345 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTE-----ESCCBBTTTCC
T ss_pred HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccC-----CCCcccCCCCC
Confidence 45678999999999999999988877666 999999996 899999999865433 35689998754
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.22 E-value=1.5e-11 Score=100.42 Aligned_cols=68 Identities=26% Similarity=0.351 Sum_probs=59.9
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|+|++|+|+++++. +|.++++|++|+|++|+|+.+++++|.++++|++|+|++|+|+++++++|.++.
T Consensus 57 LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 57 LDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp EECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred EEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 78889999998888 888999999999999999988888888888999999999998888888887766
No 35
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=5.7e-11 Score=85.95 Aligned_cols=68 Identities=29% Similarity=0.387 Sum_probs=38.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+|+.+++. .|.++++|+.|++++|+++.+.+..|.++++|++|++++|+++.+++..|..+.
T Consensus 37 L~l~~n~i~~i~~~--~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 37 IRLEQNTIKVIPPG--AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp EECCSSCCCEECTT--SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred EECCCCcCCCcCHh--HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 45555555555555 555555555555555555555555555555555555555555555555544443
No 36
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=9.6e-11 Score=83.20 Aligned_cols=67 Identities=24% Similarity=0.422 Sum_probs=62.7
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+|+.++ . .|.++++|+.|++++|+++.+++.+|.++++|+.|++++|+++.+++..|..+.
T Consensus 36 L~L~~n~i~~ip-~--~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~ 102 (193)
T 2wfh_A 36 LYLDGNQFTLVP-K--ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102 (193)
T ss_dssp EECCSSCCCSCC-G--GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred EECCCCcCchhH-H--HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCC
Confidence 789999999888 5 799999999999999999999999999999999999999999999999888776
No 37
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=1.3e-10 Score=84.13 Aligned_cols=68 Identities=26% Similarity=0.444 Sum_probs=36.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+|+.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++.+.+..|..+.
T Consensus 62 L~L~~N~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 129 (220)
T 2v70_A 62 INFSNNKITDIEEG--AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS 129 (220)
T ss_dssp EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT
T ss_pred EECCCCcCCEECHH--HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc
Confidence 44555555555554 455555555555555555555555555555555555555555555555444433
No 38
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=3.8e-10 Score=78.60 Aligned_cols=68 Identities=28% Similarity=0.433 Sum_probs=62.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++++++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|.++++++..|..+.
T Consensus 33 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 33 LELESNKLQSLPHG--VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT 100 (177)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred EEeCCCcccEeCHH--HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence 78999999999988 899999999999999999999999899999999999999999999988776655
No 39
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.06 E-value=3.4e-10 Score=80.16 Aligned_cols=69 Identities=29% Similarity=0.406 Sum_probs=62.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. +.|.++++|+.|++++|+++.+.+.+|.++++|+.|++++|+++.+++..|..+.
T Consensus 34 L~l~~n~i~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 34 LLLNDNELGRISSD-GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH 102 (192)
T ss_dssp EECCSCCCCSBCCS-CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred EECCCCcCCccCCc-cccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC
Confidence 78999999998873 0489999999999999999999999999999999999999999999998887766
No 40
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=3.7e-10 Score=78.51 Aligned_cols=61 Identities=26% Similarity=0.296 Sum_probs=57.2
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~ 63 (166)
.|++++|+|+.+++. .|.++++|+.|+|++|+|+.+++..|..+++|+.|++++|++....
T Consensus 58 ~L~Ls~N~l~~l~~~--~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 58 RLDLDNNQLTVLPAG--VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EEECCCCCcCccChh--hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 389999999999999 9999999999999999999999999999999999999999987654
No 41
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.02 E-value=5.2e-10 Score=86.50 Aligned_cols=68 Identities=31% Similarity=0.349 Sum_probs=42.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|+|++|+|+.+++. .|.++++|+.|+|++|+|+.+++..|..+++|+.|++++|++..+++..|..+.
T Consensus 69 L~L~~N~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 136 (361)
T 2xot_A 69 LLLSHNHLNFISSE--AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136 (361)
T ss_dssp EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred EECCCCcCCccChh--hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc
Confidence 55666666666655 566666666666666666666666666666666666666666666666555554
No 42
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.01 E-value=6.9e-10 Score=81.52 Aligned_cols=65 Identities=32% Similarity=0.492 Sum_probs=32.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~ 68 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++..|.
T Consensus 64 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 128 (251)
T 3m19_A 64 LNLDYNQLQTLSAG--VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128 (251)
T ss_dssp EECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred EECCCCcCCccCHh--HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhc
Confidence 44555555555544 455555555555555555555544444444555555555555444444433
No 43
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=6.6e-10 Score=77.61 Aligned_cols=62 Identities=24% Similarity=0.257 Sum_probs=57.9
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
.|+|++|+|+.+++. .|.++++|+.|+|++|+|+.+++..|..+++|+.|++++|++.....
T Consensus 61 ~L~Ls~N~l~~i~~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 61 QLYFNSNKLTAIPTG--VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp EEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred EEECCCCCCCccChh--HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 389999999999998 89999999999999999999999999999999999999999987654
No 44
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.00 E-value=8.5e-10 Score=78.71 Aligned_cols=68 Identities=26% Similarity=0.422 Sum_probs=42.7
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|++|++++|+++.+++..|..+.
T Consensus 33 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 33 LDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100 (208)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred EEcCCCccCcCChh--hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence 56666666666665 566666666666666666666666666666666666666666666655554443
No 45
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.94 E-value=1.4e-09 Score=79.00 Aligned_cols=69 Identities=29% Similarity=0.427 Sum_probs=65.0
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
.|++++|+++++.+. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++.+++..|..+.
T Consensus 44 ~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 44 ILYLHDNQITKLEPG--VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp EEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred EEEcCCCccCccCHH--HhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence 389999999999998 999999999999999999999999999999999999999999999998887666
No 46
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.94 E-value=3.9e-10 Score=86.83 Aligned_cols=67 Identities=22% Similarity=0.351 Sum_probs=60.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeecc-CCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLA-HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls-~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+|+.+++. .|.+ .+|+.++++ +|.++.+++++|.++++|+.|++++|+|+.+++..|..+.
T Consensus 159 L~L~~N~i~~i~~~--~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~ 226 (350)
T 4ay9_X 159 LWLNKNGIQEIHNS--AFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226 (350)
T ss_dssp EECCSSCCCEECTT--SSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCC
T ss_pred hccccccccCCChh--hccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccch
Confidence 78999999999998 7765 678999987 5799999999999999999999999999999999888887
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.93 E-value=1.7e-09 Score=81.28 Aligned_cols=68 Identities=29% Similarity=0.492 Sum_probs=64.9
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.++++.|..+++|+.|++++|+++++++..|..+.
T Consensus 105 L~l~~N~l~~l~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 105 LDVSFNRLTSLPLG--ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp EECCSSCCCCCCSS--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred EECCCCcCcccCHH--HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 79999999999998 999999999999999999999999999999999999999999999998887766
No 48
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.91 E-value=1.1e-09 Score=79.69 Aligned_cols=68 Identities=18% Similarity=0.364 Sum_probs=59.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCc-CCccCccccCCCCCCCEEeccC-CcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQ-LRTIPPRVFAHLPLLNSLELDG-NHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~-l~~i~~~~f~~l~~L~~l~l~~-N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|+.|++++|+ ++.+++.+|.++++|++|++++ |.++.+++..|..++
T Consensus 36 L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 36 LKLIETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp EEEESCCCSEECTT--TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred EEEeCCcceEECHH--HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 78889999999988 88899999999999996 8999888888899999999998 899998888777665
No 49
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.90 E-value=3.1e-09 Score=78.81 Aligned_cols=68 Identities=28% Similarity=0.420 Sum_probs=42.9
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|++|++++|+++.+++..|..+++|++|++++|+++.+++..|..+.
T Consensus 42 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 42 LDLQSNKLSSLPSK--AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109 (270)
T ss_dssp EECCSSCCSCCCTT--SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred EECcCCCCCeeCHH--HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence 56666666666665 666666666666666666666666666666666666666666666655554443
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.88 E-value=3.2e-09 Score=84.28 Aligned_cols=68 Identities=31% Similarity=0.423 Sum_probs=44.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+|+.+++. .|.++++|+.|++++|+++.+++..|.++++|+.|++++|+++.+++..|..++
T Consensus 80 L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 80 LNLMENNIQMIQAD--TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred EECcCCcCceECHH--HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 56666666666666 666666666666666666666666666666666666666666666666555444
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.88 E-value=4.6e-09 Score=78.30 Aligned_cols=68 Identities=32% Similarity=0.412 Sum_probs=43.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++..|..++
T Consensus 110 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 110 LHLDRCGLQELGPG--LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp EECTTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred EECCCCcCCEECHh--HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 56666666666665 666666666666666666666666666666666666666666666655555443
No 52
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.88 E-value=2.1e-09 Score=74.89 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=42.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|++++|.++.+ . .|.++++|+.|++++|+++.++++.|..+++|+.|++++|+++.++.
T Consensus 47 L~Ls~N~l~~~--~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 105 (176)
T 1a9n_A 47 IDFSDNEIRKL--D--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105 (176)
T ss_dssp EECCSSCCCEE--C--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred EECCCCCCCcc--c--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchh
Confidence 66777777776 3 56677777777777777777776666677777777777777766654
No 53
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.88 E-value=4e-09 Score=78.29 Aligned_cols=68 Identities=26% Similarity=0.351 Sum_probs=45.9
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|++|++++|.+..+++..|..+.
T Consensus 33 L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 33 LDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp EECTTCCCCEECTT--TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred EECCCCcccccCHh--HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 56677777777666 666777777777777777766666666666777777777776666665555443
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.87 E-value=4.3e-09 Score=83.24 Aligned_cols=68 Identities=32% Similarity=0.403 Sum_probs=47.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|+.|+|++|+++.+++.+|.++++|+.|++++|+++.+++..|..+.
T Consensus 69 L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 69 LNLHENQIQIIKVN--SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp EECCSCCCCEECTT--TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred EEccCCcCCeeCHH--HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 56777777777766 677777777777777777777766677777777777777777766666665554
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.86 E-value=4.9e-09 Score=77.86 Aligned_cols=67 Identities=34% Similarity=0.500 Sum_probs=38.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l 70 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++..|..+
T Consensus 90 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 156 (272)
T 3rfs_A 90 LILTGNQLQSLPNG--VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156 (272)
T ss_dssp EECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred EECCCCccCccChh--HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC
Confidence 45566666665555 55556666666666666665555555555566666666665555555544443
No 56
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.84 E-value=4.2e-09 Score=83.21 Aligned_cols=68 Identities=31% Similarity=0.450 Sum_probs=47.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++.+.+..|..++
T Consensus 304 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 304 LTLAQNEINKIDDN--AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp EECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred EECCCCcccccChh--HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 56677777777666 677777777777777777777666677777777777777777777666665554
No 57
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.81 E-value=8.2e-09 Score=82.19 Aligned_cols=68 Identities=21% Similarity=0.407 Sum_probs=42.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|+.|+|++|.++.+.+..|.++++|++|++++|+++.+++..|..+.
T Consensus 37 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 37 LDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp EECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred EECCCCccceECHh--HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 56666666666665 666666666666666666666666666666666666666666666655554443
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.80 E-value=6.3e-09 Score=78.93 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=57.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+++.++.. . .+++|+.|++++|+++.+++. |..+++|+.|++++|+++.++.. +..++ +|
T Consensus 174 L~L~~N~l~~~~~~--~--~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 174 LNLQYNFIYDVKGQ--V--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGN 247 (317)
T ss_dssp EECTTSCCCEEECC--C--CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTC
T ss_pred EECCCCcCcccccc--c--ccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCC
Confidence 67777777777554 3 478888888888888888776 77888999999999999888654 44443 99
Q ss_pred CccccCCcHH
Q psy10386 74 PLVCTCDLMW 83 (166)
Q Consensus 74 p~~C~C~l~~ 83 (166)
++.|+|...+
T Consensus 248 ~~~~~~~~~~ 257 (317)
T 3o53_A 248 GFHCGTLRDF 257 (317)
T ss_dssp CCBHHHHHHH
T ss_pred CccCcCHHHH
Confidence 9999754333
No 59
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.80 E-value=5.1e-09 Score=88.33 Aligned_cols=100 Identities=23% Similarity=0.267 Sum_probs=74.6
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|++++..|. .|+++++|+.|+|++|++++..|..|..+++|+.||+++|++++..|..|..+. +|
T Consensus 637 LdLs~N~l~g~ip~--~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 637 LDMSYNMLSGYIPK--EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp EECCSSCCBSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred EECcCCcccccCCH--HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 78999999988777 899999999999999999988788899999999999999999987777777665 66
Q ss_pred CccccCC-cHHHHHHHHhccCCcchhcccCCceecCCC
Q psy10386 74 PLVCTCD-LMWYKEWSTSLGEKEDEQMSRKRTVCTLGS 110 (166)
Q Consensus 74 p~~C~C~-l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~ 110 (166)
++...-. ...+. ......+.++...|+.|.
T Consensus 715 ~l~g~iP~~~~~~-------~~~~~~~~gN~~Lcg~~l 745 (768)
T 3rgz_A 715 NLSGPIPEMGQFE-------TFPPAKFLNNPGLCGYPL 745 (768)
T ss_dssp EEEEECCSSSSGG-------GSCGGGGCSCTEEESTTS
T ss_pred cccccCCCchhhc-------cCCHHHhcCCchhcCCCC
Confidence 6653211 01111 122233456778888764
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.80 E-value=9.1e-09 Score=79.01 Aligned_cols=65 Identities=25% Similarity=0.351 Sum_probs=33.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~ 68 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++.+|..+++|++|++++|+++.+++..|.
T Consensus 57 L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 57 LDLSNNRITYISNS--DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp EECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred EECCCCcCcccCHH--HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence 44555555555554 455555555555555555555544455555555555555555554444333
No 61
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.79 E-value=7.6e-09 Score=79.57 Aligned_cols=68 Identities=24% Similarity=0.413 Sum_probs=58.7
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcC-CccCccccCCCCCCCE-EeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQL-RTIPPRVFAHLPLLNS-LELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l-~~i~~~~f~~l~~L~~-l~l~~N~l~~~~~~~~~~l~ 71 (166)
|+|++|+|+.++++ +|.++++|+.|+|++|++ +.+++++|.++++++. +.+++|++..++++.|..++
T Consensus 35 L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~ 104 (350)
T 4ay9_X 35 LRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104 (350)
T ss_dssp EEEESCCCSEECTT--SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred EEccCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence 78999999999998 899999999999999987 5578888988888765 66777899999888888776
No 62
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.78 E-value=9.8e-09 Score=83.93 Aligned_cols=68 Identities=28% Similarity=0.244 Sum_probs=50.7
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|.++++++. .|.++++|++|++++|+++.+.+.+|.++++|++|++++|++..+.+..|..+.
T Consensus 38 L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 38 LEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp EECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred EEccCCccCcCChh--HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 67777777777777 777777777777777777777777777777777777777777777666665554
No 63
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.78 E-value=1.2e-08 Score=79.32 Aligned_cols=67 Identities=25% Similarity=0.445 Sum_probs=38.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l 70 (166)
|++++|.++.+++. .|.++++|+.|++++|.++.+++..|..+++|++|++++|.+..+++..|..+
T Consensus 74 L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 140 (390)
T 3o6n_A 74 LNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140 (390)
T ss_dssp EECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred EECCCCcccccChh--hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCC
Confidence 45555666555555 55555666666666666555555555555555555555555555555544433
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.78 E-value=1.1e-08 Score=83.70 Aligned_cols=68 Identities=28% Similarity=0.403 Sum_probs=41.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++++++. .|.++++|+.|++++|+++.+++.+|.++++|++|++++|.+..+.+..|..+.
T Consensus 37 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 37 IDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp EECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred EECCCCCcCEeChh--hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 55666666666665 566666666666666666666665566666666666666666666555555444
No 65
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.78 E-value=1.5e-08 Score=77.09 Aligned_cols=68 Identities=25% Similarity=0.406 Sum_probs=62.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|++|++++|+++.+.+..|..+++|++|++++|+++.++...+..+.
T Consensus 57 L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~ 124 (330)
T 1xku_A 57 LDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ 124 (330)
T ss_dssp EECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCC
T ss_pred EECCCCcCCEeChh--hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhccccc
Confidence 78999999999998 899999999999999999999888899999999999999999998887776665
No 66
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.77 E-value=1.4e-08 Score=78.93 Aligned_cols=68 Identities=19% Similarity=0.342 Sum_probs=60.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|++|++++|+++.+++..|..+++|++|++++|.+..+++..|..++
T Consensus 98 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 165 (390)
T 3o6n_A 98 LYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165 (390)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT
T ss_pred EECCCCCCCcCCHH--HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC
Confidence 78899999999888 889999999999999999999888888899999999999999988888777665
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.76 E-value=1.7e-08 Score=76.83 Aligned_cols=68 Identities=26% Similarity=0.429 Sum_probs=59.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|.++.+++. .|.++++|+.|++++|+++.+.+..|..+++|++|++++|++..++...+..+.
T Consensus 59 L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~ 126 (332)
T 2ft3_A 59 LDLQNNDISELRKD--DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV 126 (332)
T ss_dssp EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCC
T ss_pred EECCCCcCCccCHh--HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCC
Confidence 78899999999888 899999999999999999999888898899999999999998888877765555
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.76 E-value=1.3e-08 Score=82.38 Aligned_cols=68 Identities=26% Similarity=0.351 Sum_probs=48.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++.+|..+++|++|++++|.+..+++..|..+.
T Consensus 33 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 33 LDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp EECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred EEccCCccCccChh--HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 66777777777766 677777777777777777777777777777777777777777777666665554
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.75 E-value=1.3e-08 Score=74.07 Aligned_cols=66 Identities=27% Similarity=0.394 Sum_probs=57.5
Q ss_pred EEecCC-CCceeeCCccccCCCccCc-eeeccCCcCCccCccccCCCCCCCEEeccCCc-ccccCccccCCC
Q psy10386 2 IEIWGG-QLSSIFEKVATSGGLHNLD-SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH-IHTVDPAAFSGL 70 (166)
Q Consensus 2 L~ls~N-~l~~~~~~~~~f~~l~~L~-~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~-l~~~~~~~~~~l 70 (166)
|++++| +++.+++. .|.++++|+ .|++++|+++.+++..|.. ++|+.|++++|+ ++.+++..|..+
T Consensus 135 L~l~~N~~l~~i~~~--~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 135 LEITDNPYMTSIPVN--AFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp EEEESCTTCCEECTT--TTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTC
T ss_pred EECCCCcchhhcCcc--cccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcc
Confidence 788899 99999988 899999999 9999999999888888876 789999999995 888888888766
No 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.75 E-value=2.4e-08 Score=75.91 Aligned_cols=61 Identities=25% Similarity=0.405 Sum_probs=41.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|++++|+++.+.+. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|++..++.
T Consensus 197 L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 257 (330)
T 1xku_A 197 LHLDGNKITKVDAA--SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257 (330)
T ss_dssp EECTTSCCCEECTG--GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred EECCCCcCCccCHH--HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence 56667777766666 66677777777777777776666666666667777777776666654
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.74 E-value=1.7e-08 Score=81.03 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=52.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|.++++++. ..+++|+.|++++|.++.+++. |..+++|+.|++++|.+++++.. +..++ +|
T Consensus 174 L~Ls~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 174 LNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGN 247 (487)
T ss_dssp EECTTSCCCEEECC----CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTC
T ss_pred EecCCCcccccccc----ccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCC
Confidence 56666666666543 2477788888888888887776 66788888888888888887664 33333 89
Q ss_pred CccccCC
Q psy10386 74 PLVCTCD 80 (166)
Q Consensus 74 p~~C~C~ 80 (166)
++.|+|-
T Consensus 248 ~l~c~~~ 254 (487)
T 3oja_A 248 GFHCGTL 254 (487)
T ss_dssp CBCHHHH
T ss_pred CCcCcch
Confidence 9999653
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.74 E-value=1.1e-08 Score=82.58 Aligned_cols=68 Identities=24% Similarity=0.345 Sum_probs=47.9
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++++++. .|.++++|++|++++|+++.+++.+|..+++|++|++++|.++.+++..|..+.
T Consensus 31 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 31 LDLSFNKITYIGHG--DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp EECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred EECcCCccCccChh--hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 66777777777666 677777777777777777777766677777777777777777776666555544
No 73
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.73 E-value=1.5e-08 Score=77.16 Aligned_cols=62 Identities=27% Similarity=0.350 Sum_probs=45.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~ 65 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++.++..
T Consensus 198 L~l~~n~i~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 259 (332)
T 2ft3_A 198 LHLDHNKIQAIELE--DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259 (332)
T ss_dssp CBCCSSCCCCCCTT--SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred EECCCCcCCccCHH--HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence 56777777777766 677777777777777777777776677777777777777777766654
No 74
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=1.5e-08 Score=77.51 Aligned_cols=58 Identities=24% Similarity=0.258 Sum_probs=54.2
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~ 61 (166)
.|+|++|+|+++++. .|.++++|+.|+|++|+|+.+++..|..+. |+.|++++|++..
T Consensus 60 ~L~l~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 60 NLTIVKSGLRFVAPD--AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EEECCSSCCCEECTT--GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EEECCCCccceeCHH--HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 389999999999999 999999999999999999999999997776 9999999999874
No 75
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.72 E-value=2.1e-08 Score=82.26 Aligned_cols=67 Identities=25% Similarity=0.445 Sum_probs=35.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l 70 (166)
|++++|.++.+++. .|.++++|+.|++++|.++.+++..|..+++|++|++++|.+..+++..|..+
T Consensus 80 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 146 (597)
T 3oja_B 80 LNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146 (597)
T ss_dssp EECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred EECCCCCCCCCChH--HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccC
Confidence 45555555555554 45555555555555555555555555555555555555555555555444433
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.72 E-value=1.6e-08 Score=82.17 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=51.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|.++.+++. .|.++++|+.|++++|+++.+++++|.++++|++|++++|+++.++...+..+.
T Consensus 57 L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~ 124 (562)
T 3a79_B 57 LSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLR 124 (562)
T ss_dssp EECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCS
T ss_pred EECCCCCccccChh--hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCC
Confidence 67788888887777 788888888888888888888777787788888888888887777765333333
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.71 E-value=2.7e-08 Score=81.67 Aligned_cols=68 Identities=19% Similarity=0.342 Sum_probs=62.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|.++.+++. .|.++++|+.|++++|.++.+++..|..+++|++|++++|.+..+++..|..++
T Consensus 104 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 171 (597)
T 3oja_B 104 LYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171 (597)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred EECCCCcCCCCCHH--HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence 78999999999998 899999999999999999999999889999999999999999999988887766
No 78
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.71 E-value=1.2e-08 Score=70.94 Aligned_cols=63 Identities=21% Similarity=0.207 Sum_probs=56.5
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCcccccCcc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDPA 65 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l~~~~~~ 65 (166)
.|++++|+++.+++. .|.++++|+.|++++|+++.++. ..+..+++|+.|++++|++..++..
T Consensus 68 ~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~ 131 (176)
T 1a9n_A 68 TLLVNNNRICRIGEG--LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 131 (176)
T ss_dssp EEECCSSCCCEECSC--HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH
T ss_pred EEECCCCcccccCcc--hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhH
Confidence 379999999999988 78999999999999999999876 4688899999999999999887653
No 79
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.70 E-value=1e-08 Score=70.59 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=56.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc-cccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~-~~~~~l~ 71 (166)
|++++|.++.+ . .|.++++|+.|++++|+++...+..+..+++|+.|++++|.++.++. ..+..++
T Consensus 54 L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 54 LSLINVGLISV--S--NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120 (168)
T ss_dssp EEEESSCCCCC--S--SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred EeCcCCCCCCh--h--hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence 78999999988 5 78999999999999999999767777779999999999999998764 5555554
No 80
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.69 E-value=2e-08 Score=69.18 Aligned_cols=62 Identities=23% Similarity=0.195 Sum_probs=53.1
Q ss_pred EEecCCCCc--eeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccC
Q psy10386 2 IEIWGGQLS--SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68 (166)
Q Consensus 2 L~ls~N~l~--~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~ 68 (166)
|++++|+++ .++. .|..+++|+.|++++|.++.+ ..|..+++|++|++++|.+....+..+.
T Consensus 29 L~l~~n~l~~~~i~~---~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 29 LVLDNCKSNDGKIEG---LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp EECCSCBCBTTBCSS---CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred EECCCCCCChhhHHH---HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 789999998 6654 688999999999999999998 6688999999999999999985555544
No 81
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.66 E-value=2.3e-08 Score=75.73 Aligned_cols=67 Identities=22% Similarity=0.203 Sum_probs=49.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|++++..+. .|.++++|+.|++++|+++...+. +..+++|+.|++++|++.+..+..|..++
T Consensus 202 L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 202 VDLSRNMLEGDASV--LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp EECCSSEEEECCGG--GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred EECcCCcccCcCCH--HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 67777777777777 778888888888888888766555 66778888888888888766666555554
No 82
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.63 E-value=3.8e-08 Score=80.56 Aligned_cols=57 Identities=30% Similarity=0.455 Sum_probs=32.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~ 63 (166)
|++++|+|++++ .|.++++|+.|++++|+|+.+|. .|..+++|+.|++++|++++++
T Consensus 446 L~Ls~n~l~~lp----~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 446 LHLAHKDLTVLC----HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 502 (567)
T ss_dssp EECTTSCCSSCC----CGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG
T ss_pred EEecCCCCCCCc----CccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc
Confidence 556666666553 24555666666666666665543 3555666666666666665554
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.62 E-value=2.4e-08 Score=80.28 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=42.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~ 65 (166)
|++++|+++++++. .|.++++|++|++++|+++.+.+..|.++++|++|++++|+++.++..
T Consensus 26 L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 87 (520)
T 2z7x_B 26 LNISQNYISELWTS--DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH 87 (520)
T ss_dssp EECCSSCCCCCCHH--HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC
T ss_pred EECCCCcccccChh--hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc
Confidence 56666666666665 666677777777777777766666666667777777777766666655
No 84
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.62 E-value=6.1e-08 Score=72.82 Aligned_cols=67 Identities=27% Similarity=0.463 Sum_probs=36.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCc-cCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRT-IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~-i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l 70 (166)
|++++|.++...+. .|.++++|+.|++++|.++. ..+..|..+++|+.|++++|.++.+.+..|..+
T Consensus 131 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 198 (306)
T 2z66_A 131 LDISHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198 (306)
T ss_dssp EECTTSCCEECSTT--TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred EECCCCcCCccchh--hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence 45555555555555 55555555555555555554 333445555555555555555555555444443
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.61 E-value=6e-08 Score=80.33 Aligned_cols=68 Identities=25% Similarity=0.278 Sum_probs=41.7
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+++. .|.++++|++|++++|+++.+++..|..+++|++|++++|.+.++.+..|..+.
T Consensus 78 L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 145 (680)
T 1ziw_A 78 LNLQHNELSQLSDK--TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145 (680)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT
T ss_pred EECCCCccCccChh--hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccc
Confidence 55666666666665 566666666666666666666666666666666666666666665555544433
No 86
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.61 E-value=2.5e-08 Score=67.26 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=48.3
Q ss_pred EEecCCCCc--eeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccC
Q psy10386 2 IEIWGGQLS--SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68 (166)
Q Consensus 2 L~ls~N~l~--~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~ 68 (166)
|++++|.++ .++ . .|..+++|+.|++++|.++.+ ..|..+++|+.|++++|.+++..+..+.
T Consensus 22 L~l~~n~l~~~~~~-~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 22 LVLDNSRSNEGKLE-G--LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp EECTTCBCBTTBCC-S--CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred EEccCCcCChhHHH-H--HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 788888888 454 4 578888899999999988888 5577888899999999988874444433
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.53 E-value=1.7e-07 Score=79.91 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=55.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.+.+. .|.++++|+.|++++|+++.+.+..|..+++|+.|++++|.+..+++..|..++
T Consensus 295 L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 295 LNLAYNKINKIADE--AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp EEEESCCCCEECTT--TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred EECCCCcCCCCChH--HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 67788888888777 788888888888888888888777788888888888888888888877776665
No 88
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.52 E-value=7.4e-08 Score=80.99 Aligned_cols=70 Identities=27% Similarity=0.355 Sum_probs=53.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|+|++|.|+.++. .|.++++|+.|+|++|+|+.++.. |..+++|++|+|++|.|+.++.. |..+. +|
T Consensus 252 L~Ls~N~l~~lp~---~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 252 LYLNGNSLTELPA---EIKNLSNLRVLDLSHNRLTSLPAE-LGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGN 326 (727)
T ss_dssp CBCTTSCCSCCCG---GGGGGTTCCEEECTTSCCSSCCSS-GGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTS
T ss_pred EEeeCCcCcccCh---hhhCCCCCCEEeCcCCcCCccChh-hcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCC
Confidence 6788888886664 577888888888888888877444 67788888888888888888765 55554 66
Q ss_pred Ccc
Q psy10386 74 PLV 76 (166)
Q Consensus 74 p~~ 76 (166)
++.
T Consensus 327 ~l~ 329 (727)
T 4b8c_D 327 PLE 329 (727)
T ss_dssp CCC
T ss_pred ccC
Confidence 665
No 89
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.48 E-value=1e-07 Score=72.12 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=32.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~ 60 (166)
|++++|++++..+. .|.++++|++|++++|+++...+..|..+++|++|++++|+++
T Consensus 106 L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 106 LYITHTNVSGAIPD--FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp EEEEEECCEEECCG--GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred EECcCCeeCCcCCH--HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc
Confidence 45555555544444 5555566666666666555444444555566666666666655
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.46 E-value=2e-07 Score=70.45 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=42.0
Q ss_pred EEecCCCCce---eeCCccccCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCcccccCcccc
Q psy10386 2 IEIWGGQLSS---IFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDPAAF 67 (166)
Q Consensus 2 L~ls~N~l~~---~~~~~~~f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l~~~~~~~~ 67 (166)
|++++|+++. ++.. .|.++++|+.|++++|+++...+ ..+..+++|+.|++++|+++.++...+
T Consensus 206 L~L~~N~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~ 273 (312)
T 1wwl_A 206 LALRNAGMETPSGVCSA--LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273 (312)
T ss_dssp EECTTSCCCCHHHHHHH--HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred EECCCCcCcchHHHHHH--HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence 6677777773 3334 45566777777777777776553 445556777777777777777666554
No 91
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.46 E-value=1.5e-07 Score=63.47 Aligned_cols=58 Identities=26% Similarity=0.307 Sum_probs=46.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~ 63 (166)
|++++|.++.+ . .|.++++|+.|++++|+++...+..+..+++|+.|++++|+++.++
T Consensus 47 L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~ 104 (149)
T 2je0_A 47 LSTINVGLTSI--A--NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104 (149)
T ss_dssp EECTTSCCCCC--T--TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHH
T ss_pred EECcCCCCCCc--h--hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChH
Confidence 67888888887 4 6788888888888888888866666767888888888888887764
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.44 E-value=3.8e-07 Score=68.77 Aligned_cols=69 Identities=22% Similarity=0.153 Sum_probs=32.7
Q ss_pred EEecCCCCceeeCCcc-ccCCCccCceeeccCCcCCccCccccCCC---CCCCEEeccCCcccccCccccCCC
Q psy10386 2 IEIWGGQLSSIFEKVA-TSGGLHNLDSLVLAHNQLRTIPPRVFAHL---PLLNSLELDGNHIHTVDPAAFSGL 70 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~-~f~~l~~L~~L~ls~N~l~~i~~~~f~~l---~~L~~l~l~~N~l~~~~~~~~~~l 70 (166)
|++++|+++.++.... .|.++++|++|++++|+++.+.|..+..+ ++|++|++++|+++.++...+..+
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L 274 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKL 274 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCC
T ss_pred EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCC
Confidence 4555555544332100 13445555555555555555533222232 455555555555555555444333
No 93
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.44 E-value=2.4e-07 Score=78.16 Aligned_cols=78 Identities=21% Similarity=0.176 Sum_probs=54.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|++++..+. .|.++++|+.|++++|+++...+..|..+++|+.|++++|++.+..+..+..++ +|
T Consensus 471 L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 471 LILDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp EECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred EEecCCcccCcCCH--HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 56777777766666 677777777777777777766666677777777777777777765555555544 77
Q ss_pred CccccCCc
Q psy10386 74 PLVCTCDL 81 (166)
Q Consensus 74 p~~C~C~l 81 (166)
++.+.+..
T Consensus 549 ~l~g~ip~ 556 (768)
T 3rgz_A 549 LFNGTIPA 556 (768)
T ss_dssp EEESBCCG
T ss_pred ccCCcCCh
Confidence 77776553
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.42 E-value=2.5e-07 Score=65.38 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=47.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|.++.++ .+.++++|+.|++++|+++...+..|..+++|++|++++|.++...+..+..++
T Consensus 71 L~l~~n~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 136 (197)
T 4ezg_A 71 LTINNIHATNYN----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136 (197)
T ss_dssp EEEESCCCSCCG----GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS
T ss_pred EEccCCCCCcch----hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC
Confidence 677778766553 466788888888888888775556677788888888888888765555555444
No 95
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=3.8e-07 Score=69.38 Aligned_cols=65 Identities=31% Similarity=0.394 Sum_probs=59.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCC-EEeccCCcccccCccccCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN-SLELDGNHIHTVDPAAFSGL 70 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~-~l~l~~N~l~~~~~~~~~~l 70 (166)
+++++|+++.+++. +|.++.+|+.+++++| ++.|+.++|.++.+|+ .+++.+ .+..|.+++|.++
T Consensus 231 l~L~~n~i~~I~~~--aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c 296 (329)
T 3sb4_A 231 LDISKTNATTIPDF--TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC 296 (329)
T ss_dssp EECTTBCCCEECTT--TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred EECCCCCcceecHh--hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence 68889999999999 9999999999999998 8999999999999999 999988 8999999998754
No 96
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.40 E-value=3.1e-07 Score=75.22 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=62.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC-ccccCCCC--------C
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGLE--------D 72 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~-~~~~~~l~--------~ 72 (166)
|++++|+|+.+|. .|.++++|+.|+|++|+++.++ .|..+++|+.|++++|+++++. +..|..++ +
T Consensus 468 L~Ls~N~l~~lp~---~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 468 LDLSHNRLRALPP---ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp EECCSSCCCCCCG---GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred eecCcccccccch---hhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 8999999998865 6899999999999999999986 5889999999999999999996 66666665 7
Q ss_pred CCcccc
Q psy10386 73 NPLVCT 78 (166)
Q Consensus 73 Np~~C~ 78 (166)
|++...
T Consensus 543 N~l~~~ 548 (567)
T 1dce_A 543 NSLCQE 548 (567)
T ss_dssp SGGGGS
T ss_pred CcCCCC
Confidence 777543
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.40 E-value=1.3e-07 Score=71.43 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=26.9
Q ss_pred EEecCCCCceeeCCccccCCC-----ccCceeeccCCcCCccCccccCCCCCCCEEeccCCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGL-----HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l-----~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l 59 (166)
|++++|+++++ +. .|.++ ++|++|++++|+++.+++..|..+++|++|++++|++
T Consensus 126 L~Ls~N~l~~~-~~--~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 126 LNLRNVSWATR-DA--WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp EEEESCBCSSS-SS--HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred EEccCCCCcch-hH--HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 34444444444 23 34443 4455555555555555544455555555555555553
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.37 E-value=3.9e-07 Score=67.40 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=26.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 62 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~ 62 (166)
|++++|+++.+++. .+ ++|+.|++++|+++.++ .+..+++|+.|++++|+++.+
T Consensus 90 L~L~~N~l~~l~~~--~~---~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 90 LSVNRNRLKNLNGI--PS---ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp EECCSSCCSCCTTC--CC---SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC
T ss_pred EECCCCccCCcCcc--cc---CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC
Confidence 45555555554432 21 45555555555555442 244455555555555555444
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.37 E-value=1.6e-07 Score=78.98 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=55.3
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcccc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~ 67 (166)
.|+|++|+|+.++. .|.++++|++|+|++|.|+.++.. |..+++|+.|+|++|+|++..+..+
T Consensus 274 ~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 274 VLDLSHNRLTSLPA---ELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EEECTTSCCSSCCS---SGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred EEeCcCCcCCccCh---hhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHH
Confidence 38999999998855 689999999999999999999776 8899999999999999987655444
No 100
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.36 E-value=6.7e-07 Score=73.98 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=38.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeec------cCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC----
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVL------AHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE---- 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~l------s~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~---- 71 (166)
|++++|++++++. .+.++++|+.|++ ++|++....+..|..+++|+.|++++|++..++...+..+.
T Consensus 518 L~Ls~N~l~~ip~---~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~L 594 (636)
T 4eco_A 518 IDLSYNSFSKFPT---QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDI 594 (636)
T ss_dssp EECCSSCCSSCCC---GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTCCEEEC
T ss_pred EECCCCCCCCcCh---hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHhCcCCEEEC
Confidence 4455555555332 3444555555555 23444444444455566666666666666666655444444
Q ss_pred -CCCccc
Q psy10386 72 -DNPLVC 77 (166)
Q Consensus 72 -~Np~~C 77 (166)
+|++.|
T Consensus 595 s~N~l~~ 601 (636)
T 4eco_A 595 KDNPNIS 601 (636)
T ss_dssp CSCTTCE
T ss_pred cCCCCcc
Confidence 666665
No 101
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.33 E-value=7.9e-07 Score=67.76 Aligned_cols=66 Identities=27% Similarity=0.412 Sum_probs=55.6
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++.++. .|.++++|+.|++++|+++.+++. |..+++|+.|++++|.+.+..+..|..++
T Consensus 188 L~L~~n~l~~lp~---~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 253 (328)
T 4fcg_A 188 LRLEWTGIRSLPA---SIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRA 253 (328)
T ss_dssp EEEEEECCCCCCG---GGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred EECcCCCcCcchH---hhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence 7889999997765 588899999999999999988775 77889999999999988777777776665
No 102
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.32 E-value=8.2e-07 Score=67.66 Aligned_cols=67 Identities=21% Similarity=0.150 Sum_probs=56.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|+++++++ .|.++++|+.|++++|.+....+..|..+++|+.|++++|.+.+..+..|..++
T Consensus 211 L~L~~N~l~~l~~---~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 211 LKIRNSPLSALGP---AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp EEEESSCCCCCCG---GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred EEccCCCCCcCch---hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 7899999998876 588999999999999988888788899999999999999887666665565554
No 103
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=8.2e-07 Score=67.52 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=60.8
Q ss_pred EEecCCCCceeeCCccccCCCccCc-eeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLD-SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~-~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l 70 (166)
+++.+| ++.+++. +|.++.+|+ .+++++ .++.|++++|.++.+|+.+++++|.+..++.++|.++
T Consensus 255 l~l~~n-i~~I~~~--aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 255 IKLPHN-LKTIGQR--VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp EECCTT-CCEECTT--TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred EECCcc-cceehHH--HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 577787 9999999 999999999 999999 8999999999999999999999999999999999864
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.30 E-value=3.9e-07 Score=73.17 Aligned_cols=59 Identities=24% Similarity=0.319 Sum_probs=52.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|++++|.++.+++. .|.++++|+.|+|++|.++.+++ |..+++|+.|++++|.++.+++
T Consensus 39 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 39 LDLSGNPLSQISAA--DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV 97 (487)
T ss_dssp EECCSSCCCCCCGG--GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE
T ss_pred EEeeCCcCCCCCHH--HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC
Confidence 78999999999988 89999999999999999998776 8888899998888888876653
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.29 E-value=8e-07 Score=62.72 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=52.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
|++++|.++.++ . +..+++|+.|++++|.++.++ .+..+++|++|++++|.++...+..|..++
T Consensus 49 L~l~~n~i~~l~-~---l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 49 ITLANINVTDLT-G---IEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp EEEESSCCSCCT-T---GGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred EeccCCCccChH-H---HhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 788999999776 3 678899999999999887775 478899999999999999886666666665
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.27 E-value=4.7e-07 Score=68.53 Aligned_cols=60 Identities=22% Similarity=0.216 Sum_probs=32.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCcccc-CCCCCCCEEeccCCcccccC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVF-AHLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f-~~l~~L~~l~l~~N~l~~~~ 63 (166)
|++++|+++.+++. .|.++++|+.|++++|+++.+++..+ ..+++|+.|++++|.++.++
T Consensus 125 L~l~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 125 IYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp EECCSSCCCSGGGB--CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred EECCCCCCCCccch--hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 44555555555554 55555556666666665555544433 23455555555555555443
No 107
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.27 E-value=6.1e-07 Score=68.37 Aligned_cols=70 Identities=33% Similarity=0.432 Sum_probs=54.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|.++.+ . .+..+++|+.|++++|+++.++ .+..+++|+.|++++|++....+..|..++ +|
T Consensus 248 L~l~~n~l~~~--~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 248 LEIGTNQISDI--N--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp EECCSSCCCCC--G--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred EECCCCccCCC--h--hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 67888888876 3 5778888888888888888873 377888888888888888887776666554 66
Q ss_pred Cccc
Q psy10386 74 PLVC 77 (166)
Q Consensus 74 p~~C 77 (166)
++..
T Consensus 322 ~l~~ 325 (347)
T 4fmz_A 322 HITD 325 (347)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6654
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.26 E-value=1.4e-06 Score=65.35 Aligned_cols=57 Identities=30% Similarity=0.441 Sum_probs=36.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|++++|+++.++ .+..+++|+.|++++|+++.+ ..+..+++|+.|++++|+++.+++
T Consensus 117 L~L~~n~i~~~~----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 117 LSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp EECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred EECCCCcCCCCh----hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 566677666652 455666666666666666666 235566666666666666666554
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.25 E-value=1.6e-06 Score=64.06 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=42.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~ 67 (166)
|++++|.++.++ .+..+++|+.|++++|+++.+++ |..+++|+.|++++|+++.++....
T Consensus 46 L~l~~n~i~~l~----~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~ 105 (263)
T 1xeu_A 46 FNGDNSNIQSLA----GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS 105 (263)
T ss_dssp EECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC
T ss_pred EECcCCCcccch----HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc
Confidence 667777777665 25667777777777777777766 6677777777777777777655433
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.25 E-value=6.4e-08 Score=79.28 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=16.6
Q ss_pred ceeeccCCcCCccCccccCCCCCCCEEeccCCcccc
Q psy10386 26 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 26 ~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~ 61 (166)
+.|++++|+|+.++...+. +++|+.|++++|++++
T Consensus 210 ~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 210 IFFRCRENRITHIPENILS-LDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCH
T ss_pred eEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCC
Confidence 4445555555444444332 4455555555555443
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.23 E-value=1.8e-06 Score=65.07 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=26.3
Q ss_pred CCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccc
Q psy10386 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60 (166)
Q Consensus 21 ~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~ 60 (166)
.+++|+.|++++|+++.+++..|..+++|++|++++|++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc
Confidence 4556666666666666666666666677777777777654
No 112
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.18 E-value=1.6e-06 Score=65.41 Aligned_cols=57 Identities=30% Similarity=0.480 Sum_probs=34.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|++++|+++.+++ +.++++|+.|++++|+++.+++ +..+++|+.|++++|+++.+++
T Consensus 134 L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 134 LYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp EECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred EECCCCccCcCcc----ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh
Confidence 5666666665542 4456666666666666666554 5566666666666666655543
No 113
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=3.2e-06 Score=72.44 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=30.6
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccC------CcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAH------NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~------N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l 70 (166)
|++++|++++++. .+.++++|+.|++++ |++....|..|..+++|+.|++++|++..++...+..+
T Consensus 758 L~Ls~N~L~~lp~---~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L 829 (876)
T 4ecn_A 758 MDVSYNCFSSFPT---QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL 829 (876)
T ss_dssp EECCSSCCSSCCC---GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSS
T ss_pred EEeCCCCCCccch---hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCC
Confidence 3444444444332 233444444444433 33333334444455555555555555555555444333
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.14 E-value=3.1e-06 Score=63.42 Aligned_cols=55 Identities=31% Similarity=0.431 Sum_probs=28.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 62 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~ 62 (166)
|++++|+++.++ .+.++++|+.|++++|+++.++ .+..+++|+.|++++|+++.+
T Consensus 95 L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 95 LFLDENKVKDLS----SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp EECCSSCCCCGG----GGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred EECCCCcCCCCh----hhccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc
Confidence 455555555532 2445555555555555555542 244555555555555555554
No 115
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.14 E-value=1.8e-06 Score=71.43 Aligned_cols=62 Identities=24% Similarity=0.268 Sum_probs=29.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCC-------CCCEEeccCCcccccCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLP-------LLNSLELDGNHIHTVDPA 65 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~-------~L~~l~l~~N~l~~~~~~ 65 (166)
|++++|+++.+++. .|..+++|+.|++++|+++.++...|.... +|+.|++++|+++.++..
T Consensus 438 L~Ls~N~l~~lp~~--~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 506 (636)
T 4eco_A 438 INLSNNQISKFPKE--LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506 (636)
T ss_dssp EECCSSCCCSCCTH--HHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred EECcCCccCcCCHH--HHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence 34444444444444 444444555555555555544444443322 455555555555544443
No 116
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=1.7e-06 Score=64.40 Aligned_cols=43 Identities=28% Similarity=0.421 Sum_probs=28.3
Q ss_pred CCCccCceeeccCCcCCccCc--cccCCCCCCCEEeccCCccccc
Q psy10386 20 GGLHNLDSLVLAHNQLRTIPP--RVFAHLPLLNSLELDGNHIHTV 62 (166)
Q Consensus 20 ~~l~~L~~L~ls~N~l~~i~~--~~f~~l~~L~~l~l~~N~l~~~ 62 (166)
.++++|+.|+|++|+|+.+++ ..+..+++|+.|+|++|+|+++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 346677777777777776653 3344567777777777777665
No 117
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.10 E-value=4e-06 Score=63.23 Aligned_cols=56 Identities=30% Similarity=0.497 Sum_probs=30.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~ 63 (166)
|++++|+++.++ .|.++++|+.|++++|+++.+++ +..+++|+.|++++|.++.++
T Consensus 90 L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 145 (308)
T 1h6u_A 90 LELSGNPLKNVS----AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS 145 (308)
T ss_dssp EECCSCCCSCCG----GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred EEccCCcCCCch----hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCc
Confidence 556666665542 34555555555555555555543 445555555555555554443
No 118
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.07 E-value=1.2e-06 Score=66.66 Aligned_cols=59 Identities=34% Similarity=0.448 Sum_probs=54.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|++++|+++.+ . .|..+++|+.|++++|.++...+..|..+++|+.|++++|+++.+++
T Consensus 270 L~l~~n~l~~~--~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 270 LNVGSNQISDI--S--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp EECCSSCCCCC--G--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred EEccCCccCCC--h--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 78999999987 3 68899999999999999999999989999999999999999998876
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.05 E-value=2.1e-08 Score=70.99 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=42.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc-cccCCCC--------C
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLE--------D 72 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~-~~~~~l~--------~ 72 (166)
|++++|+++.++. .+..+++|+.|++++|+++.++ .+..+++|+.|++++|++..++. ..+..++ +
T Consensus 75 L~l~~n~l~~l~~---~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 75 LSLGRNLIKKIEN---LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp EEEEEEEECSCSS---HHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred EECCCCCcccccc---hhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 4556666665543 3445566666666666666654 25556667777777777766543 2333333 6
Q ss_pred CCccccC
Q psy10386 73 NPLVCTC 79 (166)
Q Consensus 73 Np~~C~C 79 (166)
|++.|.|
T Consensus 150 N~l~~~~ 156 (198)
T 1ds9_A 150 NPLYNDY 156 (198)
T ss_dssp CHHHHHH
T ss_pred Ccccccc
Confidence 7766654
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.01 E-value=6.3e-06 Score=67.98 Aligned_cols=57 Identities=30% Similarity=0.441 Sum_probs=31.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|+|++|+++.++ .|..+++|+.|+|++|+++.+ ..|..+++|+.|+|++|.+..+++
T Consensus 114 L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 114 LSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp EECTTSCCCCCG----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred EEecCCCCCCCc----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 555666665542 345555566666666655555 234555555555555555555443
No 121
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=1.2e-05 Score=68.99 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=33.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCC-------CCCEEeccCCcccccCcc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLP-------LLNSLELDGNHIHTVDPA 65 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~-------~L~~l~l~~N~l~~~~~~ 65 (166)
|++++|+++.++.. .|..+++|+.|++++|+++.++...|.... +|+.|++++|+++.++..
T Consensus 678 L~Ls~N~L~~lp~~--~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~ 746 (876)
T 4ecn_A 678 VTLSYNEIQKFPTE--LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746 (876)
T ss_dssp EECCSSCCCSCCHH--HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG
T ss_pred EEccCCcCCccCHH--HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH
Confidence 45555555555554 445555555555555555555555444332 555555555555555544
No 122
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.94 E-value=1.2e-05 Score=66.35 Aligned_cols=55 Identities=33% Similarity=0.480 Sum_probs=26.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 62 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~ 62 (166)
|+|++|+++.+ . .|..+++|+.|+|++|+++.+++ +..+++|+.|+|++|+++.+
T Consensus 136 L~Ls~N~l~~l--~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 136 LYLGNNKITDI--T--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp EECCSSCCCCC--G--GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred EECCCCccCCc--h--hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 44444444444 2 34444455555555555444443 44444555555555544444
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.93 E-value=2e-05 Score=62.67 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=35.7
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l 70 (166)
|++++|+++.+ .|..+++|+.|++++|+++.++ +..+++|+.|++++|++++++...+..+
T Consensus 196 L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 196 LNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp EECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred EECcCCcCCee-----ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence 34444444443 1345566666666666666654 4556667777777777666665555444
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.87 E-value=2.7e-05 Score=61.98 Aligned_cols=55 Identities=18% Similarity=0.324 Sum_probs=32.0
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~ 63 (166)
|++++|.+++++ .|..+++|+.|++++|+++.++ +..+++|++|++++|.+++++
T Consensus 47 L~Ls~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 47 LDCHNSSITDMT----GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp EECCSSCCCCCT----TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC
T ss_pred EEccCCCcccCh----hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee
Confidence 566666666653 2555666666666666666653 445555555555555555543
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.86 E-value=2.2e-05 Score=64.99 Aligned_cols=64 Identities=25% Similarity=0.321 Sum_probs=40.5
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N 73 (166)
|++++|+|+.++. .+++|+.|++++|+|+.++. .+++|+.|++++|+|+.++.. |..++ +|
T Consensus 226 L~Ls~N~L~~lp~------~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 226 LIVSGNRLTSLPV------LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGN 294 (622)
T ss_dssp EECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSC
T ss_pred EEccCCccCcCCC------CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCC
Confidence 4555666655542 23566777777777776665 346777888888888777543 44433 77
Q ss_pred Ccc
Q psy10386 74 PLV 76 (166)
Q Consensus 74 p~~ 76 (166)
++.
T Consensus 295 ~l~ 297 (622)
T 3g06_A 295 PLS 297 (622)
T ss_dssp CCC
T ss_pred CCC
Confidence 776
No 126
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.85 E-value=2.4e-05 Score=62.14 Aligned_cols=57 Identities=33% Similarity=0.497 Sum_probs=33.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|++++|.++.+++ |.++++|++|++++|+++.+++ |..+++|++|++++|.+..+++
T Consensus 73 L~Ls~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 129 (466)
T 1o6v_A 73 INFSNNQLTDITP----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129 (466)
T ss_dssp EECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred EECCCCccCCchh----hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH
Confidence 5566666655542 4455666666666666665554 5566666666666666655543
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.79 E-value=3.1e-06 Score=65.14 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=27.1
Q ss_pred EEecCCCCceeeC----CccccCCCc-cCceeeccCCcCCccCccccCCC-----CCCCEEeccCCcccc
Q psy10386 2 IEIWGGQLSSIFE----KVATSGGLH-NLDSLVLAHNQLRTIPPRVFAHL-----PLLNSLELDGNHIHT 61 (166)
Q Consensus 2 L~ls~N~l~~~~~----~~~~f~~l~-~L~~L~ls~N~l~~i~~~~f~~l-----~~L~~l~l~~N~l~~ 61 (166)
|++++|.++.... . .|.+++ +|+.|++++|+++...+..|..+ ++|+.|++++|.++.
T Consensus 27 L~Ls~n~l~~~~~~~l~~--~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 27 LDLSLNNLYSISTVELIQ--AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp EECTTSCGGGSCHHHHHH--HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred EEccCCCCChHHHHHHHH--HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 4455555554443 3 444444 45555555555544443333332 444555555554443
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.78 E-value=5.3e-05 Score=62.09 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=31.3
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|++++|.++++++. .+ ++|+.|++++|+|+.++ ..+++|+.|++++|.+++++.
T Consensus 64 L~Ls~n~L~~lp~~--l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~ 117 (571)
T 3cvr_A 64 LQLNRLNLSSLPDN--LP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE 117 (571)
T ss_dssp EECCSSCCSCCCSC--CC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC
T ss_pred EEeCCCCCCccCHh--Hc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch
Confidence 56667777666654 32 45666666666666555 124555566666665555544
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.71 E-value=1.9e-06 Score=60.81 Aligned_cols=60 Identities=25% Similarity=0.201 Sum_probs=52.3
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCcccccCc
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
.|++++|+++.++ .|.++++|+.|++++|+++.++. ..+..+++|+.|++++|++....+
T Consensus 97 ~L~L~~N~l~~l~----~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 97 ELWISYNQIASLS----GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EEEEEEEECCCHH----HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred EEECcCCcCCcCC----ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 3789999999975 47789999999999999998875 568899999999999999987644
No 130
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.66 E-value=5.5e-05 Score=60.01 Aligned_cols=57 Identities=23% Similarity=0.382 Sum_probs=48.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|++++|+++++++ +..+++|+.|++++|+++.++ .+..+++|+.|++++|+++.+.+
T Consensus 314 L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 314 LTLYFNNISDISP----VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp EECCSSCCSCCGG----GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG
T ss_pred EECcCCcCCCchh----hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch
Confidence 7889999988764 468899999999999999884 47889999999999999987766
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.65 E-value=7.3e-05 Score=59.42 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=21.3
Q ss_pred ccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63 (166)
Q Consensus 23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~ 63 (166)
++|++|++++|+++.++ .|..+++|++|++++|++++++
T Consensus 131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp 169 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLP 169 (454)
T ss_dssp TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCC
T ss_pred CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccC
Confidence 35555555555555554 2555555555555555555543
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.64 E-value=8.5e-05 Score=61.45 Aligned_cols=54 Identities=22% Similarity=0.456 Sum_probs=27.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~ 64 (166)
|++++|.++.+|.. .+ ++|+.|++++|.++.++. .+++|+.|++++|+++.++.
T Consensus 45 L~ls~n~L~~lp~~--l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~ 98 (622)
T 3g06_A 45 LNVGESGLTTLPDC--LP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV 98 (622)
T ss_dssp EECCSSCCSCCCSC--CC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC
T ss_pred EEecCCCcCccChh--hC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC
Confidence 45566666655554 22 455555555555555544 23455555555555544443
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.60 E-value=1.8e-05 Score=60.77 Aligned_cols=64 Identities=27% Similarity=0.300 Sum_probs=54.1
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc----cccCCCC-CCCEEeccCCcccccCcccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP----RVFAHLP-LLNSLELDGNHIHTVDPAAF 67 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~----~~f~~l~-~L~~l~l~~N~l~~~~~~~~ 67 (166)
++++.|.+++..+. .+....+|+.|++++|.++.... .+|..++ +|+.|++++|.++......|
T Consensus 3 ~~ls~n~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 71 (362)
T 3goz_A 3 YKLTLHPGSNPVEE--FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL 71 (362)
T ss_dssp EECCCCTTCCHHHH--HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH
T ss_pred cccccccchHHHHH--HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH
Confidence 57899999988876 55555569999999999999988 7888888 89999999999988765443
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.54 E-value=1.9e-05 Score=61.05 Aligned_cols=43 Identities=26% Similarity=0.139 Sum_probs=20.3
Q ss_pred cCCCccCceeeccCCcCCcc----Ccccc--CCCCCCCEEeccCCcccc
Q psy10386 19 SGGLHNLDSLVLAHNQLRTI----PPRVF--AHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 19 f~~l~~L~~L~ls~N~l~~i----~~~~f--~~l~~L~~l~l~~N~l~~ 61 (166)
+..+++|+.|++++|.++.. -+..+ ..+++|+.|++++|.++.
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 44445555555555555433 11222 124555555555555554
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.50 E-value=0.00016 Score=57.48 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=17.8
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccC
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIP 39 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~ 39 (166)
|++++|++++++ .|.++++|++|++++|+++.++
T Consensus 136 L~L~~n~l~~lp----~~~~l~~L~~L~l~~N~l~~lp 169 (454)
T 1jl5_A 136 LGVSNNQLEKLP----ELQNSSFLKIIDVDNNSLKKLP 169 (454)
T ss_dssp EECCSSCCSSCC----CCTTCTTCCEEECCSSCCSCCC
T ss_pred EECcCCCCCCCc----ccCCCCCCCEEECCCCcCcccC
Confidence 455555555543 2445555555555555555443
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.49 E-value=7.4e-05 Score=55.50 Aligned_cols=57 Identities=25% Similarity=0.274 Sum_probs=47.2
Q ss_pred EEecCCCCceeeC--CccccCCCccCceeeccCCcCCccC-ccccCCCCCCCEEeccCCcccc
Q psy10386 2 IEIWGGQLSSIFE--KVATSGGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 2 L~ls~N~l~~~~~--~~~~f~~l~~L~~L~ls~N~l~~i~-~~~f~~l~~L~~l~l~~N~l~~ 61 (166)
|+|++|+|+++++ . .+..+++|+.|+|++|+|+.+. -..+..+ +|+.|++++|++..
T Consensus 175 L~Ls~N~l~~l~~l~~--~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 175 LNLSNNRLYRLDDMSS--IVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp EECTTSCCCCCGGGTT--HHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred EECCCCCCCCCccchh--HHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 8999999999774 4 5778999999999999999883 2334444 99999999999865
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.44 E-value=0.00023 Score=55.70 Aligned_cols=65 Identities=14% Similarity=0.293 Sum_probs=43.9
Q ss_pred EEecCCCCc-----eeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386 2 IEIWGGQLS-----SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70 (166)
Q Consensus 2 L~ls~N~l~-----~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l 70 (166)
+++.+|.+. .+++. +|.++++|+.+++. +.++.+..++|.++.+|+.+.+..| +..+..++|.+.
T Consensus 276 l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~ 345 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT 345 (401)
T ss_dssp EEEESSCCCCCTTCEECTT--TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred EEeCCccccCCcccEECHH--HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence 344555443 57777 77777777777777 4477777777777777777777444 677777777654
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.35 E-value=0.00033 Score=54.86 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=41.4
Q ss_pred CCCceeeCCccccCCCccCceeeccCCcCC-----ccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386 7 GQLSSIFEKVATSGGLHNLDSLVLAHNQLR-----TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70 (166)
Q Consensus 7 N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~-----~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l 70 (166)
+.++.+... +|.++++|+.+++.+|.+. .++..+|.++++|+.+++. +.+..|..++|.++
T Consensus 257 ~~i~~I~~~--aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c 322 (401)
T 4fdw_A 257 NGVTNIASR--AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN 322 (401)
T ss_dssp TTCCEECTT--TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC
T ss_pred CCccEEChh--HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC
Confidence 446666666 7777777777777766655 5667777777777777777 44777777777653
No 139
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.23 E-value=8.5e-05 Score=56.03 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=25.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCcc-CccccCCCCCCCEEeccCCccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTI-PPRVFAHLPLLNSLELDGNHIH 60 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i-~~~~f~~l~~L~~l~l~~N~l~ 60 (166)
|++++|.+.+..+. +.++++|+.|++++|.++.. .+..+..+++|+.|++++|.+.
T Consensus 75 L~l~~n~l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~ 131 (336)
T 2ast_B 75 FRCPRSFMDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 131 (336)
T ss_dssp EECTTCEECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC
T ss_pred EEcCCccccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC
Confidence 34445554444443 22345555555555544432 2233444444555555544443
No 140
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.20 E-value=7.4e-05 Score=56.38 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=32.4
Q ss_pred EEecCCCCcee-eCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCC-ccc
Q psy10386 2 IEIWGGQLSSI-FEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIH 60 (166)
Q Consensus 2 L~ls~N~l~~~-~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N-~l~ 60 (166)
|++++|.++.. .+. .+.++++|+.|++++|.++...+..+..+++|++|++++| .++
T Consensus 98 L~L~~~~l~~~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 98 MDLSNSVIEVSTLHG--ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp EECTTCEECHHHHHH--HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred EEccCCCcCHHHHHH--HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 55666665542 223 4556666666666666665544445555666666666666 344
No 141
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.12 E-value=0.00014 Score=56.19 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=36.2
Q ss_pred EEecCCCCce-----eeCCccccCCCccCceeeccCCcCC----ccCccccCCCCCCCEEeccCCccccc
Q psy10386 2 IEIWGGQLSS-----IFEKVATSGGLHNLDSLVLAHNQLR----TIPPRVFAHLPLLNSLELDGNHIHTV 62 (166)
Q Consensus 2 L~ls~N~l~~-----~~~~~~~f~~l~~L~~L~ls~N~l~----~i~~~~f~~l~~L~~l~l~~N~l~~~ 62 (166)
|++++|+++. +.+. .+..+++|+.|++++|.++ ..-+..+..+++|+.|++++|.++..
T Consensus 192 L~L~~n~l~~~g~~~l~~~--~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLE--GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp EECCSSCCCHHHHHHHHHT--TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred EECcCCCCCHhHHHHHHHH--HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 5666666661 3333 4566677777777777773 22233456677777777777777543
No 142
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.08 E-value=0.0008 Score=51.74 Aligned_cols=62 Identities=24% Similarity=0.392 Sum_probs=53.3
Q ss_pred CCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 7 GQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 7 N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
+.+..+... +|.+..+|+.+.+.++.++.|...+|.+..+|+.+.+..+ ++.|...+|.+..
T Consensus 272 ~~i~~i~~~--aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 272 AKVKTVPYL--LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp CCCSEECTT--TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ccceecccc--ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 457788888 8999999999999999999999999999999999999754 8889988887643
No 143
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.99 E-value=0.00045 Score=45.57 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=31.6
Q ss_pred CEEecCCCCceeeCCccccCCCccCceeeccCCcCC
Q psy10386 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLR 36 (166)
Q Consensus 1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~ 36 (166)
.|+|++|+|+.++++ .|.++++|+.|+|++|.+.
T Consensus 35 ~L~Ls~N~l~~l~~~--~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 35 ELVLTGNNLTALPPG--LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECTTSCCSSCCTT--TGGGCTTCCEEECCSSCCB
T ss_pred EEECCCCcCCccChh--hhhhccccCEEEecCCCee
Confidence 389999999999999 9999999999999999774
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.98 E-value=0.0015 Score=50.57 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=43.8
Q ss_pred CCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC
Q psy10386 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69 (166)
Q Consensus 8 ~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~ 69 (166)
.++.+... +|.+..+|+.+++..+ ++.|...+|.+..+|+.+++..| +..|...+|.+
T Consensus 307 ~i~~I~~~--aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 307 SVKFIGEE--AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp TCCEECTT--TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred ccceechh--hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 46677777 7888888888887644 77787888888788888888766 77777777764
No 145
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.97 E-value=0.0016 Score=50.09 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=53.7
Q ss_pred CCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 8 ~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
.++.+... +|.+..+|+.+.+..+ ++.+...+|.+..+|+.+.+.++.+..|..++|.+..
T Consensus 250 ~v~~I~~~--aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 250 NVTSIGSF--LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TCCEECTT--TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred CccEeCcc--ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 37788888 8999999999999754 8899999999999999999999999999999998644
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.66 E-value=0.0003 Score=54.53 Aligned_cols=58 Identities=16% Similarity=0.052 Sum_probs=36.7
Q ss_pred EEecCCCCceeeCCcccc-----CCCccCceeeccCCcCCccCcc----ccCCCCCCCEEeccCCcccc
Q psy10386 2 IEIWGGQLSSIFEKVATS-----GGLHNLDSLVLAHNQLRTIPPR----VFAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f-----~~l~~L~~L~ls~N~l~~i~~~----~f~~l~~L~~l~l~~N~l~~ 61 (166)
|+|++|.++..... .+ ...++|+.|+|++|.++..... ++...++|++|++++|.++.
T Consensus 131 L~Ls~n~l~~~~~~--~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~ 197 (372)
T 3un9_A 131 LGLQLNSLGPEACK--DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197 (372)
T ss_dssp EECCSSCCCHHHHH--HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred hhcCCCCCCHHHHH--HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence 67777877654433 33 2346778888888877653222 23556777888888877754
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.62 E-value=0.0039 Score=48.29 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=35.1
Q ss_pred CCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC
Q psy10386 7 GQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69 (166)
Q Consensus 7 N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~ 69 (166)
+.++.++.. +|.+..+|+.+++..+ ++.|...+|.+..+|+.+.+..+ +..|...+|.+
T Consensus 297 ~~i~~I~~~--aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 297 SRITELPES--VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp TTCCEECTT--TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred CcccccCce--eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 345556665 6666666666666543 56666666666666666666433 56666666654
No 148
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.60 E-value=0.0002 Score=56.29 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=41.1
Q ss_pred EEecCCCCceee----CCccccCCCccCceeeccCCcCCccCccccC-----CCCCCCEEeccCCccc
Q psy10386 2 IEIWGGQLSSIF----EKVATSGGLHNLDSLVLAHNQLRTIPPRVFA-----HLPLLNSLELDGNHIH 60 (166)
Q Consensus 2 L~ls~N~l~~~~----~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~-----~l~~L~~l~l~~N~l~ 60 (166)
|++++|.++... +. .+..+++|+.|++++|.++......+. ..++|+.|++++|.++
T Consensus 318 L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSS--VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp EECTTSCCBGGGHHHHHH--HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred eEcCCCCCchHHHHHHHH--HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 778888887642 23 456678899999999988765443332 2568899999999887
No 149
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.39 E-value=0.00089 Score=52.54 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=15.5
Q ss_pred CceeeccCCcCCcc----CccccCCCCCCCEEeccCCcc
Q psy10386 25 LDSLVLAHNQLRTI----PPRVFAHLPLLNSLELDGNHI 59 (166)
Q Consensus 25 L~~L~ls~N~l~~i----~~~~f~~l~~L~~l~l~~N~l 59 (166)
|++|++++|+++.. .+..|..+++|+.|++++|.+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 44444444444421 133344444444444444444
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.33 E-value=0.00069 Score=52.48 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=33.4
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCcccc-----CCCCCCCEEeccCCcccc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVF-----AHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f-----~~l~~L~~l~l~~N~l~~ 61 (166)
|+|++|.++...... .+..+.+|+.|+|++|.++......+ ...++|+.|++++|.++.
T Consensus 106 L~Ls~n~l~~~~~~~-l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~ 169 (372)
T 3un9_A 106 VNLASCQLDPAGLRT-LLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA 169 (372)
T ss_dssp EECTTCCCCHHHHHH-THHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHH
T ss_pred EEecCCCCCHHHHHH-HHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCCh
Confidence 566777665432210 22345567777777777765433332 234667777777777644
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.08 E-value=0.0063 Score=47.09 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=49.2
Q ss_pred CCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 8 ~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
.++.+... +|.+..+|+.+.+..+ ++.|...+|.+..+|+.+++.++ +..+...+|.+..
T Consensus 58 ~VtsIg~~--AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~ 117 (394)
T 4fs7_A 58 DVVSIGYA--AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCY 117 (394)
T ss_dssp EEEEECTT--TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred eEeEhHHH--HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccc
Confidence 35667788 8999999999999754 88999999999999999999755 7888888887654
No 152
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.44 E-value=0.0028 Score=51.27 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=18.4
Q ss_pred CCCccCceeeccCCcCCccC-ccccCCCCCCCEEeccCCccc
Q psy10386 20 GGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIH 60 (166)
Q Consensus 20 ~~l~~L~~L~ls~N~l~~i~-~~~f~~l~~L~~l~l~~N~l~ 60 (166)
.++++|+.|++++|.++... +.....+++|+.|++++|+++
T Consensus 485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 44455555555555543211 111223455555555555543
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.28 E-value=0.0031 Score=43.80 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=37.4
Q ss_pred EEecCC-CCceee----CCccccCCCccCceeeccCCcCCccC----ccccCCCCCCCEEeccCCcccc
Q psy10386 2 IEIWGG-QLSSIF----EKVATSGGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 2 L~ls~N-~l~~~~----~~~~~f~~l~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l~~N~l~~ 61 (166)
|+|++| .+..-. .. .+...++|+.|+|++|.+..-. ...+...++|++|++++|.+..
T Consensus 41 L~L~~n~~i~~~g~~~l~~--~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 41 VNLNNIMNIPVPTLKACAE--ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp EECTTCTTCCHHHHHHHHH--HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred EEecCCCCCCHHHHHHHHH--HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 677777 775421 12 3455678888888888876422 2234445678888888888754
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.23 E-value=0.039 Score=42.59 Aligned_cols=50 Identities=22% Similarity=0.362 Sum_probs=27.7
Q ss_pred ccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC
Q psy10386 18 TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69 (166)
Q Consensus 18 ~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~ 69 (166)
+|.+..+|+.+.+. +.++.++..+|.+..+|+.+++..+ ++.|...+|.+
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 45555555555553 3455566666666666666666543 55565555554
No 155
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=94.35 E-value=0.1 Score=32.57 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=46.9
Q ss_pred cCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccccc
Q psy10386 5 WGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 62 (166)
Q Consensus 5 s~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~ 62 (166)
.+..++.+... +|.+..+|+.+.+..+ ++.|...+|.+..+|+.+.+.+..-..+
T Consensus 4 ~g~~vt~I~~~--aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~P~~~ 58 (100)
T 2lz0_A 4 EGEPVVGMDKS--LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGEDPSAY 58 (100)
T ss_dssp CCCCCCSSCSC--TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSCGGGC
T ss_pred CCCccCEecHH--HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCCCCeE
Confidence 35678899999 9999999999999976 7999999999999999999987654333
No 156
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.34 E-value=0.0048 Score=49.86 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=25.6
Q ss_pred CccCceeeccCCcCCccCcccc-CCCCCCCEEeccCCccc
Q psy10386 22 LHNLDSLVLAHNQLRTIPPRVF-AHLPLLNSLELDGNHIH 60 (166)
Q Consensus 22 l~~L~~L~ls~N~l~~i~~~~f-~~l~~L~~l~l~~N~l~ 60 (166)
+++|+.|++++|.++......+ ..+++|+.|++++|+++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 5677777777777654433322 45677777777777764
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.33 E-value=0.0057 Score=42.44 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=40.6
Q ss_pred EEecCCCCceee----CCccccCCCccCceeeccCCcCCccC----ccccCCCCCCCEEec--cCCcccc
Q psy10386 2 IEIWGGQLSSIF----EKVATSGGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLEL--DGNHIHT 61 (166)
Q Consensus 2 L~ls~N~l~~~~----~~~~~f~~l~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l--~~N~l~~ 61 (166)
|+|++|+|..-. .. .+...++|++|+|++|.|.... ..++...++|+.|++ ++|.+..
T Consensus 70 L~Ls~n~i~~~g~~~l~~--~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 70 FSIVGTRSNDPVAFALAE--MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp EECTTSCCCHHHHHHHHH--HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred EECcCCCCChHHHHHHHH--HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 788888886522 12 3445578899999999887532 334566678999999 7788754
No 158
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.58 E-value=0.0076 Score=48.74 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=19.8
Q ss_pred CCccCceeeccCCcCCccCcc----ccCCCCCCCEEeccCCcccc
Q psy10386 21 GLHNLDSLVLAHNQLRTIPPR----VFAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 21 ~l~~L~~L~ls~N~l~~i~~~----~f~~l~~L~~l~l~~N~l~~ 61 (166)
++++|+.|++++|.++.+... .+..+++|+.|++++|.+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 345555555555555433221 22344555555555555443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=92.50 E-value=0.034 Score=38.48 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=26.6
Q ss_pred ccCceeeccCCcCCccCccccCCCCCCCEEeccCCc
Q psy10386 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH 58 (166)
Q Consensus 23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~ 58 (166)
..|+.||++++.++..--..+.++++|+.|+|+++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 467888888887766555556777888888888774
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=92.38 E-value=0.026 Score=43.53 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=29.0
Q ss_pred CCccCceeeccCCcCCccCcccc---CCCCCCCEEeccCCcccc
Q psy10386 21 GLHNLDSLVLAHNQLRTIPPRVF---AHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 21 ~l~~L~~L~ls~N~l~~i~~~~f---~~l~~L~~l~l~~N~l~~ 61 (166)
..++|+.|++.+|.+..-....+ ..+++|+.|+++.|.+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 46889999999888764211111 246789999999998865
No 161
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=92.20 E-value=0.013 Score=47.23 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=27.1
Q ss_pred EEecCCCCceeeCCccccC-CCccCceeeccCC-cCCcc-CccccCCCCCCCEEeccCCcccc
Q psy10386 2 IEIWGGQLSSIFEKVATSG-GLHNLDSLVLAHN-QLRTI-PPRVFAHLPLLNSLELDGNHIHT 61 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~-~l~~L~~L~ls~N-~l~~i-~~~~f~~l~~L~~l~l~~N~l~~ 61 (166)
|++++|.++..... .+. .+++|+.|+++++ .++.. .+..+..+++|++|++++|.++.
T Consensus 110 L~L~~~~~~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 110 IRLKRMVVTDDCLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD 170 (594)
T ss_dssp EEEESCBCCHHHHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred EEeeCcEEcHHHHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence 45555555443322 232 3455666666555 33321 11222245566666666665443
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=87.86 E-value=0.51 Score=32.51 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=37.2
Q ss_pred EEecCCCCceeeCCccccCCCccCceeeccCC-cCCccCccccCCC----CCCCEEeccCCc
Q psy10386 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHN-QLRTIPPRVFAHL----PLLNSLELDGNH 58 (166)
Q Consensus 2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N-~l~~i~~~~f~~l----~~L~~l~l~~N~ 58 (166)
||++++.|+..--. .+.++++|+.|+|++. +++.---..+..+ ++|++|+++++.
T Consensus 66 LDLs~~~Itd~GL~--~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 66 IDATDSCIMSIGFD--HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp EEEESCCCCGGGGG--GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred EeCcCCCccHHHHH--HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 67888877655444 5678888888888887 4654333334443 368888888864
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=85.28 E-value=0.21 Score=35.14 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=24.1
Q ss_pred cCCCccCceeeccCCcCCccC----ccccCCCCCCCEEeccCCccc
Q psy10386 19 SGGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIH 60 (166)
Q Consensus 19 f~~l~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l~~N~l~ 60 (166)
+..-..|+.|+|++|++..-- ..++..-.+|+.|+|+.|.|.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 334456677777777765321 122334556777777777764
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=83.92 E-value=0.44 Score=33.47 Aligned_cols=57 Identities=12% Similarity=0.035 Sum_probs=38.4
Q ss_pred EEecCCCCceeeCC--ccccCCCccCceeeccCCcCCccC----ccccCCCCCCCEEeccCCc
Q psy10386 2 IEIWGGQLSSIFEK--VATSGGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNH 58 (166)
Q Consensus 2 L~ls~N~l~~~~~~--~~~f~~l~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l~~N~ 58 (166)
|+|++|+|...-.. -..+..-..|+.|+|++|+|..-- ..++..-..|+.|+|++|.
T Consensus 75 L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 75 FSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp EECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred EEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 67888887643322 002334478999999999997532 2346667789999998753
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=74.85 E-value=0.74 Score=35.32 Aligned_cols=39 Identities=28% Similarity=0.449 Sum_probs=25.5
Q ss_pred CCccCceeeccC--Cc------CCccCcccc--CCCCCCCEEeccCCccc
Q psy10386 21 GLHNLDSLVLAH--NQ------LRTIPPRVF--AHLPLLNSLELDGNHIH 60 (166)
Q Consensus 21 ~l~~L~~L~ls~--N~------l~~i~~~~f--~~l~~L~~l~l~~N~l~ 60 (166)
.+++|+.|+|+. |. ++.+.+ .+ ...++|+.|++.+|.+.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCc
Confidence 688999998863 22 212211 12 24689999999998875
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.18 E-value=7.6 Score=23.77 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=32.9
Q ss_pred CCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386 32 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71 (166)
Q Consensus 32 ~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~ 71 (166)
+..++.|...+|.+..+|+.+.+..+ ++.|...+|.+..
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~ 43 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCT 43 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCT
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccC
Confidence 45688999999999999999999864 7888888887654
No 167
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.74 E-value=41 Score=19.67 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=7.9
Q ss_pred chhhhHHHHHHHHHHhhh
Q psy10386 145 ASLSGSFIALLVAAADLV 162 (166)
Q Consensus 145 ~~~~~~~~~~~~~~~~~v 162 (166)
.+..+++..+++++++++
T Consensus 12 ~Iv~gvi~gilliGllll 29 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAAL 29 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344444444444444443
Done!