RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10386
(166 letters)
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 83.5 bits (207), Expect = 3e-20
Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 18/118 (15%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LED 72
GLH+LD L+L N++ + P F L L +L L N++ + A + L D
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234
Query: 73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDL-PKQLVC 129
NP VC C W E C S L L L
Sbjct: 235 NPWVCDCRARPLWAWLQKFRGSSSE------VPC---SLPQRLAGRDLKRLAANDLQG 283
Score = 63.9 bits (156), Expect = 6e-13
Identities = 21/50 (42%), Positives = 24/50 (48%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL L L L N L+ +P F L L L L GN I +V AF GL
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176
Score = 63.1 bits (154), Expect = 1e-12
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL L +L L L+ + P +F L L L L N + + F L
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Score = 62.3 bits (152), Expect = 2e-12
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 21 GLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL L+ L L+ N QLR++ P F L L++L LD + + P F GL
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128
Score = 57.3 bits (139), Expect = 1e-10
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAAFSGL 70
NL L L N L I F L LL L+L N + +VDPA F GL
Sbjct: 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104
Score = 55.0 bits (133), Expect = 8e-10
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ L N++ +P F L L L N + +D AAF+GL
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 80.5 bits (199), Expect = 2e-19
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 18/120 (15%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72
GL +L +L+L N++ + F L + L L N I TV P AF L
Sbjct: 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162
Query: 73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLP-KQLVCEG 131
NP C C L W EW L +K + C +EI + D+ + C+
Sbjct: 163 NPFNCNCYLAWLGEW---LRKKRIVTGN---PRC---QKPYFLKEIPIQDVAIQDFTCDD 213
Score = 56.6 bits (137), Expect = 1e-10
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ + + E L L + ++N++ I F +N + L N + V F
Sbjct: 43 EFTVL-EATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMF 101
Query: 68 SGL 70
GL
Sbjct: 102 KGL 104
Score = 44.3 bits (105), Expect = 3e-06
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 24 NLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L +N+ + +F LP L + N I ++ AF G
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 82.9 bits (205), Expect = 2e-19
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 16/119 (13%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LED 72
GL +L L + ++Q+ I F L L L L N++ ++ F+ L
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299
Query: 73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDL-PKQLVCE 130
NP C CD++W W C + +H R L ++ C
Sbjct: 300 NPWNCDCDILWLAWWLREYIPTNSTCC----GRC---HAPMHMRGRYLVEVDQASFQCS 351
Score = 64.0 bits (156), Expect = 9e-13
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL +L++L L N L IP F +L L L L N I ++ AF+ +
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170
Score = 62.8 bits (153), Expect = 2e-12
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
LH+L+ L L N +R I F L LN+LEL N + + AF L
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146
Score = 59.4 bits (144), Expect = 3e-11
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL-DGNHIHTVDPAAFSGLE 71
L L L L +N + +IP F +P L L+L + + + AF GL
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196
Score = 58.6 bits (142), Expect = 6e-11
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL NL L L ++ +P L L LE+ GNH + P +F GL
Sbjct: 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGL 241
Score = 55.9 bits (135), Expect = 6e-10
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
N L L N ++ I F HL L L+L N I ++ AF+GL
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL 122
Score = 50.5 bits (121), Expect = 4e-08
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 21 GLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ +L L L +L I F L L L L +I + + L
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPL 217
Score = 38.6 bits (90), Expect = 4e-04
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ +V L +P + ++ L L N+I + F L
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSN---TRYLNLMENNIQMIQADTFRHL 98
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 82.1 bits (203), Expect = 4e-19
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 16/119 (13%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72
GL +L L + +Q++ I F +L L + L N++ + F+ L
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288
Query: 73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDL-PKQLVCE 130
NP C CD++W W + C ++ + + + +L C
Sbjct: 289 NPWNCNCDILWLSWWIKDMAPSNTACC----ARC---NTPPNLKGRYIGELDQNYFTCY 340
Score = 63.6 bits (155), Expect = 1e-12
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
GL NL++L L N+L TIP F +L L L L N I ++ AF+ +
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160
Score = 62.5 bits (152), Expect = 3e-12
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L +L+ L L+ N +RTI F L LN+LEL N + T+ AF L
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135
Score = 59.4 bits (144), Expect = 3e-11
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL NL L LA LR IP L L+ L+L GNH+ + P +F GL
Sbjct: 183 GLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Score = 58.6 bits (142), Expect = 5e-11
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL-DGNHIHTVDPAAFSGLE 71
L L L L +N + +IP F +P L L+L + + + AF GL
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Score = 56.3 bits (136), Expect = 4e-10
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
N L L NQ++ I F HL L L+L NHI T++ AF+GL
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111
Score = 49.7 bits (119), Expect = 6e-08
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 21 GLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ +L L L +L I F L L L L ++ + + L
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPL 206
Score = 38.2 bits (89), Expect = 6e-04
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ ++ LR +P + + L L N I + +F L
Sbjct: 43 NQFSKVICVRKNLREVPDGISTN---TRLLNLHENQIQIIKVNSFKHL 87
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 80.1 bits (198), Expect = 1e-18
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
QL + L +L L ++HN ++ + L L L+ NHI T
Sbjct: 186 QLEQL--SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Query: 68 SG---------LEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVC 106
L N CTC+ + +W + ++ + +R C
Sbjct: 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQW---IKDQRQLLVEVERMEC 288
Score = 57.7 bits (140), Expect = 9e-11
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 21 GLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL L+ L H+ L+ + VF L L L++ H F+GL
Sbjct: 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Score = 56.6 bits (137), Expect = 3e-10
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 21 GLHNLDSLVLAHNQ-LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL +L+ L +A N P +F L L L+L + + P AF+ L
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Score = 56.2 bits (136), Expect = 3e-10
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAA 66
L + E + L NL L ++H R +F L L L++ GN P
Sbjct: 112 NLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
Query: 67 FSGL 70
F+ L
Sbjct: 171 FTEL 174
Score = 51.9 bits (125), Expect = 1e-08
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAA 66
LS + G +L L L+ N + T+ F L L L+ +++ + + +
Sbjct: 63 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSV 121
Query: 67 FSGL 70
F L
Sbjct: 122 FLSL 125
Score = 46.5 bits (111), Expect = 7e-07
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD--PAAFSGL 70
+ L L N+L+++P VF L L L L N + + G
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Score = 45.8 bits (109), Expect = 2e-06
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 21 GLHNLDSLVLAHNQLRT--IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L L+ N L + L L+L N + T+ + F GL
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGL 100
Score = 36.1 bits (84), Expect = 0.003
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ + L ++P + + LEL+ N + ++ F L
Sbjct: 8 SGTEIRCNSKGLTSVPTGIPSS---ATRLELESNKLQSLPHGVFDKL 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 80.1 bits (198), Expect = 2e-18
Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 17/118 (14%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LED 72
L L + L QL + P F L L L + GN + T++ + F L+
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329
Query: 73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCE 130
NPL C C L+W L + C ++ + + D P L+
Sbjct: 330 NPLACDCRLLWVFRRRWRLNFNRQQ------PTC---ATPEFVQGKEFKDFPDVLLPN 378
Score = 63.6 bits (155), Expect = 1e-12
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED 72
GL++L+ L L L +IP +HL L L L +I+ + +F L
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201
Score = 62.4 bits (152), Expect = 3e-12
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL +L L N+L+ IP VF L L L++ N I + F L
Sbjct: 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127
Score = 62.4 bits (152), Expect = 3e-12
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL NL L ++ N++ + +F L L SLE+ N + + AFSGL
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Score = 61.7 bits (150), Expect = 6e-12
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L+NL SL + N L I R F+ L L L L+ ++ ++ A S L
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175
Score = 60.1 bits (146), Expect = 2e-11
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
NL SL + H L +P HL L L L N I T++ + L
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Score = 57.8 bits (140), Expect = 1e-10
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+L+ L L N + + P F +L L +L L N + + F+GL
Sbjct: 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103
Score = 55.1 bits (133), Expect = 9e-10
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L N+++T+ FA P L LEL+ N + V+P AF+ L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80
Score = 52.8 bits (127), Expect = 6e-09
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG-NHIHTVDPAAFSGL 70
LH L L L H + I F L L LE+ ++ T+ P GL
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224
Score = 47.0 bits (112), Expect = 5e-07
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L+ L L ++H + L SL + ++ V A L
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247
Score = 35.1 bits (81), Expect = 0.007
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 27 SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+++ + +P + L+L N I T++ F+
Sbjct: 15 AVLCHRKRFVAVPEGIPTET---RLLDLGKNRIKTLNQDEFASF 55
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 75.1 bits (185), Expect = 2e-17
Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 16/114 (14%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72
GL +L L+L N++ + F L LN L L N + T+ FS L
Sbjct: 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161
Query: 73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQ--REIKLSDLP 124
NP +C C L W ++ L E CT ++ +IK
Sbjct: 162 NPFICDCHLKWLADY---LHTNPIETSG---ARCTSPRRLANKRIGQIKSKKFR 209
Score = 57.4 bits (139), Expect = 7e-11
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ I + L + L++NQ+ + P F L LNSL L GN I + + F
Sbjct: 43 TIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100
Query: 68 SGL 70
GL
Sbjct: 101 EGL 103
Score = 51.6 bits (124), Expect = 1e-08
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ + L N ++ IPP F+ L ++L N I + P AF GL
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 74.4 bits (182), Expect = 1e-16
Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 9/121 (7%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG-------LEDN 73
GL L +L + + LR + P F P L+ L L N + ++ G L N
Sbjct: 54 GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
Query: 74 PLVCTCDLMWYKEW--STSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCEG 131
PL C+C L W + W G E + + + +P V G
Sbjct: 114 PLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVG 173
Query: 132 E 132
+
Sbjct: 174 D 174
Score = 31.6 bits (71), Expect = 0.086
Identities = 6/46 (13%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 26 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAAFSGL 70
S + L L ++ H+ ++ GL
Sbjct: 10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 74.7 bits (184), Expect = 2e-16
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
QL I LH L L ++HN L + + L L++L+ N I T
Sbjct: 484 QLEQISWG--VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541
Query: 68 SG--------LEDNPLVCTCDLMWYKEW 87
L +N + C C+ + +W
Sbjct: 542 HFPKSLAFFNLTNNSVACICEHQKFLQW 569
Score = 60.8 bits (148), Expect = 1e-11
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GLH+L +L+L N +++ P F+ L L +L + +++ L
Sbjct: 77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127
Score = 56.2 bits (136), Expect = 4e-10
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L+ ++ TI + + L L++L L GN I + P +FSGL
Sbjct: 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103
Score = 55.0 bits (133), Expect = 1e-09
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 70
GL +L++LV +L ++ L L L + N IH+ PA FS L
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152
Score = 53.9 bits (130), Expect = 3e-09
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ ++ L+ N L+ + F++ L L+L I T++ A+ GL
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL 79
Score = 51.2 bits (123), Expect = 2e-08
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 20 GGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNP 74
G L L L +AHN + + P F++L L ++L N+I T+ L +NP
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180
Score = 50.0 bits (120), Expect = 7e-08
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA-A 66
L + E A L L L +++ + +F L LN+L++ GN +
Sbjct: 410 TLKRVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
Query: 67 FSGL 70
F+
Sbjct: 469 FANT 472
Score = 48.9 bits (117), Expect = 2e-07
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 20 GGLHNLDSLVLAHNQLRT-IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL +L++L +A N + VFA+ L L+L + + F L
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496
Score = 47.3 bits (113), Expect = 5e-07
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHL----PLLNSLELDGNHIHTVD 63
+ S + A L NL + L++N ++TI L + SL++ N I +
Sbjct: 139 FIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197
Query: 64 PAAFSGL 70
AF G+
Sbjct: 198 DQAFQGI 204
Score = 45.8 bits (109), Expect = 2e-06
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 18 TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPL 75
+ L L SL L N+ LP L+ L+L N + ++S L N L
Sbjct: 323 PTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378
Score = 45.0 bits (107), Expect = 3e-06
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA-A 66
LS + G ++L L L+ N I F L L L+ + + V A
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSA 419
Query: 67 FSGL 70
F L
Sbjct: 420 FLSL 423
Score = 43.1 bits (102), Expect = 1e-05
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 18 TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPL--LNSLELDGNHIHTVDPAAFSGLE 71
L +L L L+ N L ++ L L L+L N + A F GLE
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLE 399
Score = 38.1 bits (89), Expect = 6e-04
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 21 GLHNL--DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68
GL ++ D L + + F L ++++ L G I ++
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH 306
Score = 38.1 bits (89), Expect = 7e-04
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L N+ ++ LA ++ + SL + + L+
Sbjct: 282 HCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331
Score = 37.3 bits (87), Expect = 0.001
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT-VDPAAFSGL 70
SL ++ N + I + F + L L L GN + + L
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLH-ELTLRGNFNSSNIMKTCLQNL 228
Score = 36.5 bits (85), Expect = 0.002
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 2/64 (3%)
Query: 9 LSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD--GNHIHTVDPAA 66
+ + + +A + L P + L + E + + D
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 67 FSGL 70
F L
Sbjct: 281 FHCL 284
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 70.4 bits (173), Expect = 8e-16
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
QL+ I ++ L L N+++ I ++F L L +L L N I V P +F
Sbjct: 65 QLTGIEPNAFEG--ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122
Query: 68 SGLE--------DNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIK 119
L NP C C L W+ EW L +K + + C + R+++
Sbjct: 123 EHLNSLTSLNLASNPFNCNCHLAWFAEW---LRKKSLNGGAAR---C---GAPSKVRDVQ 173
Query: 120 LSDL-PKQLVCEG 131
+ DL + C
Sbjct: 174 IKDLPHSEFKCSS 186
Score = 38.4 bits (90), Expect = 3e-04
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 26 DSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L+L N+L I +F LP L LEL N + ++P AF G
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 71.7 bits (176), Expect = 8e-16
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+L ++ + T L+ L LA+N L +P + L L++L L N ++T+ F
Sbjct: 135 ELKTLPPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 68 S-------GLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSN 112
L NP +C C++++++ W L + + K+ V ++
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEILYFRRW---LQDNAENVYVWKQGVDVKAMTS 241
Score = 55.9 bits (135), Expect = 4e-10
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L ++ N+L ++P L L L L GN + T+ P +
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Score = 53.6 bits (129), Expect = 3e-09
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+L+ + G L L +L L+HNQL+++P + LP L L++ N + ++ A
Sbjct: 66 ELTKL----QVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 68 SGL 70
GL
Sbjct: 121 RGL 123
Score = 51.6 bits (124), Expect = 1e-08
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
L + L L L +L + V LP+L +L+L N + ++ P
Sbjct: 42 LLYTFSLATLM--PYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL-PLLG 96
Query: 68 SGL 70
L
Sbjct: 97 QTL 99
Score = 44.3 bits (105), Expect = 4e-06
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ L L+ N L T L L LD + + L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTL 76
Score = 34.3 bits (79), Expect = 0.012
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 16 VATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ + + + L +PP + L L N ++T A
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPY 54
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 72.4 bits (178), Expect = 1e-15
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 11/89 (12%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
QL + L +L L ++HN ++ + L L L+ NHI T
Sbjct: 481 QLEQLSPT--AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 68 SG---------LEDNPLVCTCDLMWYKEW 87
L N CTC+ + +W
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQW 567
Score = 56.6 bits (137), Expect = 3e-10
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L +L +L+L N ++++ F+ L L L ++ +++ L
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Score = 55.4 bits (134), Expect = 7e-10
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L+ +++TI + L L++L L GN I ++ AFSGL
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99
Score = 51.2 bits (123), Expect = 2e-08
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 70
GL +L LV L ++ HL L L + N I + P FS L
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Score = 50.8 bits (122), Expect = 3e-08
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ +L L+ N LR + F P L L+L I T++ A+ L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Score = 49.3 bits (118), Expect = 1e-07
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 20 GGLHNLDSLVLAHNQL-RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
GL +L+ L +A N P +F L L L+L + + P AF+ L
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Score = 48.9 bits (117), Expect = 1e-07
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH-TVDPAAFSGL 70
L NL L ++H R +F L L L++ GN P F+ L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Score = 45.4 bits (108), Expect = 2e-06
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 6 GGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLP----LLNSLELDGNHIHT 61
+L F L NL+ L L+ N++++I L L SL+L N ++
Sbjct: 138 SFKLPEYF------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 62 VDPAAFSGL 70
+ P AF +
Sbjct: 192 IQPGAFKEI 200
Score = 43.9 bits (104), Expect = 7e-06
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA-A 66
LS + G +L L L+ N + T+ F L L L+ +++ +
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 67 FSGL 70
F L
Sbjct: 417 FLSL 420
Score = 41.6 bits (98), Expect = 5e-05
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
++ + + +F L N+ S L + + F++ LEL
Sbjct: 267 LDYYLDDIIDLF------NCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ 318
Query: 62 VDPAAFSGL 70
L
Sbjct: 319 FPTLKLKSL 327
Score = 39.2 bits (92), Expect = 2e-04
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 18 TSGGLHNLDSLVLAHNQL--RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ L +L+ L L+ N L + + L L+L N + T+ + F GL
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGL 395
Score = 33.5 bits (77), Expect = 0.023
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 20 GGLHNLD----SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH-TVDPAAFSGL 70
LH + SL L+ N + I P F + L+ L L N V GL
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGL 224
Score = 32.7 bits (75), Expect = 0.048
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 13 FEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
E+V L L + + P L L G + +
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342
Score = 32.7 bits (75), Expect = 0.049
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 17 ATSGGLHNLDSLVLAHNQLRTIP---PRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ GL NL L +F L ++S L I V ++
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302
Score = 31.2 bits (71), Expect = 0.15
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 18 TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD--PAAFSGL 70
+ L +L L N+ LP L L+L N + + G
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 71.6 bits (176), Expect = 2e-15
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
LSSI + L ++ + L+HN+L + +HL + L L NHI + P+
Sbjct: 487 DLSSIDQH--AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543
Query: 68 SG--------LEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIK 119
L NPL CTC +++ EW E + + T+C + R ++
Sbjct: 544 PILSQQRTINLRQNPLDCTCSNIYFLEW---YKENMQKLEDTEDTLC---ENPPLLRGVR 597
Query: 120 LSDLP 124
LSD+
Sbjct: 598 LSDVT 602
Score = 58.9 bits (143), Expect = 5e-11
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL L L Q+ I F L++L L N + + A SG
Sbjct: 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104
Score = 58.9 bits (143), Expect = 5e-11
Identities = 12/52 (23%), Positives = 17/52 (32%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
G L L + +I + L SL L NHI ++ E
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153
Score = 57.3 bits (139), Expect = 2e-10
Identities = 12/51 (23%), Positives = 17/51 (33%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
H LD+LVL N L + + L L I ++D
Sbjct: 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128
Score = 56.2 bits (136), Expect = 5e-10
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AA 66
+ + L +L SL L++N+ ++ F P L L+L + D +
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
Query: 67 FSGL 70
F L
Sbjct: 421 FQNL 424
Score = 55.0 bits (133), Expect = 1e-09
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L+SL L N + +I L L+ N IH + S L+
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177
Score = 55.0 bits (133), Expect = 1e-09
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
++ + L + N L TI F+ L L L+L I+ + F
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ 80
Score = 51.6 bits (124), Expect = 2e-08
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT-VDPAA 66
LS + + GL L LVL+ N+ + ++ P L L + GN +
Sbjct: 289 HLSELPSGL---VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345
Query: 67 FSGL 70
L
Sbjct: 346 LENL 349
Score = 51.6 bits (124), Expect = 2e-08
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L+ L LA +L+ + F +L LL L L + + F GL
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448
Score = 51.2 bits (123), Expect = 2e-08
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD---PAAFSGL 70
LH L L L+H+ L ++F LP L L L GNH + + L
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475
Score = 48.9 bits (117), Expect = 2e-07
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTI---PPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
GL L L L N L L L L + ++D AF+ L+
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500
Score = 48.5 bits (116), Expect = 2e-07
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
I V +++S+ L + I F L L+L H+ + P+
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGL 297
Query: 68 SGL 70
GL
Sbjct: 298 VGL 300
Score = 48.5 bits (116), Expect = 2e-07
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD--GNHIHTVDPA 65
+SSI K+ L L +N + + + L +L L+ GN I ++P
Sbjct: 140 HISSI--KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197
Query: 66 AFSGL 70
AF
Sbjct: 198 AFDSA 202
Score = 48.1 bits (115), Expect = 3e-07
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIP--PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L NL L L+H+ + T +L L SL L N ++ AF
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400
Score = 46.5 bits (111), Expect = 9e-07
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN--SLELDGNHIHTVDPA 65
Q + K + + +L I P VF L ++ S+ L ++ +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 66 AFSGL 70
F
Sbjct: 273 TFHCF 277
Score = 44.6 bits (106), Expect = 4e-06
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 20 GGLHNLDSLVLAHNQLRT-IPPRVFAHLPLLNSLELDGNHIHTVD--PAAFSGL 70
+L L + N R + +L L L+L + I T D L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Score = 35.0 bits (81), Expect = 0.007
Identities = 12/54 (22%), Positives = 14/54 (25%), Gaps = 3/54 (5%)
Query: 20 GGLHNLD--SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L SL L N + I P F + SL G V
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNST 226
Score = 34.6 bits (80), Expect = 0.011
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
++ I S +L+ N L + + L + + PA F
Sbjct: 190 DIAGIEPGAFDSAVFQSLN-FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248
Query: 68 SGLEDNPL 75
GL + +
Sbjct: 249 EGLCEMSV 256
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 70.6 bits (173), Expect = 3e-15
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 13/80 (16%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFA---HLPLLNSLELDGNHIHTVDPAAFSG-------- 69
+ L L L+ NQ+ P + LP L L+L N + +
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193
Query: 70 --LEDNPLVCTCDLMWYKEW 87
L +NPL C C L
Sbjct: 194 LYLHNNPLECDCKLYQLFSH 213
Score = 63.7 bits (155), Expect = 9e-13
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ NL L L+ N L T+ +F+ L L L L NHI VD AF +
Sbjct: 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135
Score = 63.7 bits (155), Expect = 9e-13
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
LS + + + L NL SL+L+HN L I F +P L L+L NH+HT+D F
Sbjct: 50 NLSRLRAEWTPTR-LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108
Query: 68 SGL 70
S L
Sbjct: 109 SDL 111
Score = 50.2 bits (120), Expect = 5e-08
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 24 NLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L+HN L + L L+SL L NH++ + AF +
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 70.9 bits (174), Expect = 4e-15
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LED 72
L L+ L L++N +R + + F LP L L LD N + +V F L
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404
Query: 73 NPLVCTC-DLMWYKEW 87
NP C+C + + W
Sbjct: 405 NPWDCSCPRIDYLSRW 420
Score = 58.6 bits (142), Expect = 7e-11
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
++ ++ + V + +L+ L LA N++ I F L L L L N + ++D F
Sbjct: 286 KIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343
Query: 68 SGL 70
L
Sbjct: 344 ENL 346
Score = 58.2 bits (141), Expect = 1e-10
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 13/95 (13%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLR--TIPPRVFAHLPLLNSLELDGNHIHTVDP- 64
Q + GL NL+ L L L + F L L L L N+I + P
Sbjct: 90 QFLQLETGAFN--GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147
Query: 65 AAFSG--------LEDNPLVCTCDLMWYKEWSTSL 91
+ F L N + C+
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182
Score = 54.8 bits (132), Expect = 1e-09
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRT-IPPRVFAHLPLLNSLELDGNHIHTVDPAA 66
++ + E L +L L + I F L L L+LD N ++ A
Sbjct: 41 SIAELNETS--FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98
Query: 67 FSGL 70
F+GL
Sbjct: 99 FNGL 102
Score = 54.0 bits (130), Expect = 3e-09
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ + L+ +++ + VF+H L L L N I+ +D AF GL
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Score = 53.2 bits (128), Expect = 5e-09
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH--TVDPAAFSGL 70
GL +L L L +NQ + F L L L L ++ + F L
Sbjct: 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128
Score = 48.6 bits (116), Expect = 2e-07
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA-AFSGL 70
+++ + L+ N + + F+ L L L+++ V F GL
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78
Score = 37.8 bits (88), Expect = 8e-04
Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN--SLELDGNHIHTVDPA 65
+ I + L L N++++I + + L L + ++
Sbjct: 140 NIKKIQPASFFLN-MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198
Query: 66 AFSGLEDN 73
+
Sbjct: 199 WLGWEKCG 206
Score = 34.0 bits (78), Expect = 0.015
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 30 LAHNQLRTIPPRVFAHLPL--LNSLELDGNHIHTVDPAAFSGL 70
H + F L + + +L + I + + FS
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 70.5 bits (173), Expect = 6e-15
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
F L NL L L+ QL + P F L L L + N + +V F
Sbjct: 456 SFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514
Query: 68 SG--------LEDNPLVCTC-DLMWYKEW 87
L NP C+C + + W
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543
Score = 59.7 bits (145), Expect = 3e-11
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L +L +L+L N ++++ F+ L L L ++ +++ L
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Score = 57.0 bits (138), Expect = 2e-10
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L+ +++TI + L L++L L GN I ++ AFSGL
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99
Score = 55.5 bits (134), Expect = 9e-10
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 70
GL +L LV L ++ HL L L + N I + P FS L
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Score = 55.1 bits (133), Expect = 1e-09
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ +L L+ N LR + F P L L+L I T++ A+ L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Score = 52.8 bits (127), Expect = 6e-09
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 21 GLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
GL L+ L H+ L+ + VF L L L++ H F+GL
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Score = 50.1 bits (120), Expect = 5e-08
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 20 GGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L L L +AHN +++ P F++L L L+L N I ++ L
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Score = 50.1 bits (120), Expect = 6e-08
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH-TVDPAA 66
L + E L NL L ++H R +F L L L++ GN P
Sbjct: 407 NLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 67 FSGLE 71
F+ L
Sbjct: 466 FTELR 470
Score = 47.4 bits (113), Expect = 4e-07
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLP----LLNSLELDGNHIHTVDPAAFSGL 70
L NL+ L L+ N++++I L L SL+L N ++ + P AF +
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200
Score = 44.7 bits (106), Expect = 4e-06
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTI--PPRVFAHLPLLNSLELDGNHIHTVDPA 65
+ + F +V L +L+ L L+ N L + L L+L N + T+ +
Sbjct: 336 KGGNAFSEV----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SS 390
Query: 66 AFSGL 70
F GL
Sbjct: 391 NFLGL 395
Score = 40.1 bits (94), Expect = 2e-04
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 18 TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD--PAAFSGL 70
+ L +L L N+ LP L L+L N + + G
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Score = 35.8 bits (83), Expect = 0.004
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 21 GLHNLD----SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH-TVDPAAFSGLE 71
LH + SL L+ N + I P F + L+ L L N V GL
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLA 225
Score = 32.8 bits (75), Expect = 0.040
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L N+ S L + + F++ LEL L+
Sbjct: 280 CLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLK 328
Score = 31.2 bits (71), Expect = 0.13
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 24 NLDSLVLAHNQLR-TIPPRVFAHLPLLNSLEL------DGNHIHTVDPAAFSGL 70
L L L +N + L L L + ++ D +A GL
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 67.3 bits (165), Expect = 1e-14
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73
+ L +L+L++N+LR IPPR F L L L L GN I V AF+ L N
Sbjct: 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Query: 74 PLVCTCDLMWYKEW 87
PL C C++ W +W
Sbjct: 137 PLYCDCNMQWLSDW 150
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 68.5 bits (168), Expect = 3e-14
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
I + L L + L N L T+P VF + L SL L N I +V+ F
Sbjct: 547 GFDEIPVE--VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Query: 68 SG---------LEDNPLVCTCDLM-WYKEW 87
+ NP CTC+ + W+ W
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNW 634
Score = 61.6 bits (150), Expect = 6e-12
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L L HN+L + + FA L L L N I + F
Sbjct: 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Score = 57.3 bits (139), Expect = 2e-10
Identities = 12/51 (23%), Positives = 18/51 (35%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
NL L L N ++ I F L +L+L N + + L
Sbjct: 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144
Score = 56.9 bits (138), Expect = 3e-10
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L SL + N + + P + LP+L L L N + + F+
Sbjct: 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96
Score = 56.2 bits (136), Expect = 5e-10
Identities = 14/56 (25%), Positives = 20/56 (35%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPL 75
NL +L L+HN L + L L L L N I + ++ L
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173
Score = 54.2 bits (131), Expect = 2e-09
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
L ++ + L NL L L++N + I + L L L+L N++ + A
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524
Query: 68 SGLEDNPL 75
G L
Sbjct: 525 PGGPIYFL 532
Score = 54.2 bits (131), Expect = 2e-09
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
QLS+ NL L L++N L + FA LP L L+ N+I + +
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
Query: 68 SGL 70
GL
Sbjct: 293 HGL 295
Score = 53.9 bits (130), Expect = 3e-09
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
N+ L L HNQLR +P F L SL++ N I ++P L
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL 72
Score = 53.1 bits (128), Expect = 6e-09
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPL--LNSLELDGNHIHTVDPA 65
LSS K+ T L NL L+L++N+++ + L LEL N I P
Sbjct: 132 GLSST--KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189
Query: 66 AFSGL 70
F +
Sbjct: 190 CFHAI 194
Score = 52.3 bits (126), Expect = 1e-08
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD--PAAFSGL 70
GL N+ + L++N+ + FA +P L L L + VD P+ F L
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479
Score = 51.5 bits (124), Expect = 2e-08
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
+ ++ L I F L L L ++ N I + F+GL
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353
Score = 51.2 bits (123), Expect = 2e-08
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 10 SSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPL--LNSLELDGNHIHTVDPAAF 67
S+ EK+ ++ +L L+++QL T F L L L+L N+++ V +F
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268
Query: 68 SGL 70
+ L
Sbjct: 269 AWL 271
Score = 50.4 bits (121), Expect = 4e-08
Identities = 11/67 (16%), Positives = 23/67 (34%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
++ ++ + +L L L+ NQ++ P F + L L L+ +
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215
Query: 68 SGLEDNP 74
N
Sbjct: 216 CLELANT 222
Score = 50.4 bits (121), Expect = 5e-08
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIP--PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
+ +L L+L L+ + P F L L L+L N+I ++ GLE
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504
Score = 50.0 bits (120), Expect = 7e-08
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 20 GGLHNLDSLVLAHNQL-RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L +L+ L L N++ + + + + L + + L N + +F+ +
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453
Score = 49.2 bits (118), Expect = 1e-07
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH--IHTVDPAAFSGLEDNPL 75
L L+ L + N + I +F L L L L + + T+ F L +PL
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383
Score = 48.1 bits (115), Expect = 2e-07
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN---------HIHTVDPAAFSGL 70
L L+ L +N ++ + L + L L + + +D +F L
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328
Score = 47.3 bits (113), Expect = 6e-07
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT-VDPAA 66
L ++ + S L L L N++ I F+ L L L+L N I +
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 67 FSGL 70
+ GL
Sbjct: 426 WRGL 429
Score = 44.6 bits (106), Expect = 5e-06
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 20 GGLHNLDSLVLAHNQLRTI--------PPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL L+ L L HN L + P L L+ L L+ N + F L
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559
Score = 44.6 bits (106), Expect = 5e-06
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFA---HLPLLNSLELDGNHIHTVDPAAFSGLEDNPLV 76
+ L L L + QL + +L L + + T F GL+ L
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251
Score = 43.8 bits (104), Expect = 7e-06
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHN--QLRTIPPRVFAHLPL--LNSLELDGNHIHTVD 63
+ I GL NL L L+++ LRT+ F L L+ L L N I ++
Sbjct: 340 DIPGIKSN--MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397
Query: 64 PAAFSGLE 71
AFS L
Sbjct: 398 SDAFSWLG 405
Score = 42.3 bits (100), Expect = 2e-05
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ + +H +L +P + + + L L N + + A F+
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTN---ITVLNLTHNQLRRLPAANFTRY 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 67.1 bits (164), Expect = 9e-14
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 17/89 (19%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
L S L L L ++ N+L+T+P P+L +++ N + +V F
Sbjct: 442 NLDSFSL------FLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIF 493
Query: 68 SG--------LEDNPLVCTCDLMWY-KEW 87
L NP C+C + Y W
Sbjct: 494 DRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522
Score = 57.0 bits (138), Expect = 2e-10
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
NL L+L +++ TI F L L L+L NH+ ++ + F L
Sbjct: 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97
Score = 55.1 bits (133), Expect = 1e-09
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAAFSGL 70
L +L+ L L+ N L ++ F L L L L GN T+ + F L
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Score = 52.8 bits (127), Expect = 7e-09
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL +L+ L + LR + + ++ L L + + L
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195
Score = 52.4 bits (126), Expect = 1e-08
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ SL L+ N++ I L L L + I+T++ AF L
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73
Score = 49.3 bits (118), Expect = 1e-07
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 20 GGLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL +L + + I FA L LN LE+ + + +
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171
Score = 47.0 bits (112), Expect = 6e-07
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 8 QLSSI-FEKVATSGGLHNLDSLVLAHNQLRTIP--PRVFAHLPLLNSLELDGNHIHTVDP 64
+ + A G +L +LVL+ N LR++ + L L SL++ N H + P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-P 403
Query: 65 AAFSGLE 71
+ E
Sbjct: 404 DSCQWPE 410
Score = 45.9 bits (109), Expect = 1e-06
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
L V L + + + ++++ +P HL L L+L N +
Sbjct: 297 YLFYDLSTV--YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354
Query: 68 SGLEDNPLVCTCDL 81
+ P + T L
Sbjct: 355 ACKGAWPSLQTLVL 368
Score = 45.9 bits (109), Expect = 2e-06
Identities = 6/47 (12%), Positives = 17/47 (36%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ L + L V++ L + + ++ + + V + L
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333
Score = 45.9 bits (109), Expect = 2e-06
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDG-NHIHTVDPAAFSGL 70
G L +L L L N +T+ +F +L L +L + + F+GL
Sbjct: 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Score = 43.2 bits (102), Expect = 1e-05
Identities = 7/52 (13%), Positives = 17/52 (32%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
+ ++ L L ++ + L + LEL ++ + E
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220
Score = 40.1 bits (94), Expect = 1e-04
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 21 GLHNLDSLVLAHNQLRTIP---PRVFAHLPLLNSLELDGNHIHTVDPAA--FSGL 70
L +L+ L L+ N + P L +L L NH+ ++ L
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386
Score = 35.1 bits (81), Expect = 0.008
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L ++ L L L + + ++ + +F+ L
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243
Score = 33.5 bits (77), Expect = 0.027
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 30 LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+IP + A + SL+L N I +
Sbjct: 12 GRSRSFTSIPSGLTAAM---KSLDLSFNKITYIGHGDLRAC 49
Score = 28.2 bits (63), Expect = 1.5
Identities = 3/50 (6%), Positives = 11/50 (22%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
++ + + L + ++ +S L
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 64.6 bits (158), Expect = 3e-13
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72
L +L L L +NQL+ +P F L L +L+LD N + V AF LE +
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 73 NPLVCTC-DLMWYKEW 87
NP CTC +++ +W
Sbjct: 215 NPWDCTCNGIIYMAKW 230
Score = 58.1 bits (141), Expect = 7e-11
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+LSS+ K L L L L N+L+T+P +F L L +L + N + + F
Sbjct: 48 KLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF 105
Query: 68 SGL 70
L
Sbjct: 106 DQL 108
Score = 56.5 bits (137), Expect = 2e-10
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+L ++ V L NL L L NQL+++PPRVF L L L L N + ++ F
Sbjct: 96 KLQALPIGVFD--QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 68 SGL 70
L
Sbjct: 154 DKL 156
Score = 55.0 bits (133), Expect = 8e-10
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL++L + N+L+ +P VF L L L LD N + ++ P F L
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Score = 50.0 bits (120), Expect = 4e-08
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ L L N+L ++P + F L L L L+ N + T+ F L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 64.8 bits (158), Expect = 5e-13
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 12/145 (8%)
Query: 18 TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-----D 72
L L L L N+L + L L++ N + +P F L
Sbjct: 499 VFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVLDITH 556
Query: 73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCEGE 132
N +C C+L + W + L L + E E
Sbjct: 557 NKFICECELSTFINW-----LNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEE 611
Query: 133 KGGRRSPNSAPSASLSGSFIALLVA 157
+ +++ + + +
Sbjct: 612 VLKSLKFSLFIVCTVTLTLFLMTIL 636
Score = 56.4 bits (136), Expect = 5e-10
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72
GL NL L L++N L + F LP + ++L NHI + F LE D
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371
Query: 73 NPLVCTCDLMWYKE 86
N L + +
Sbjct: 372 NALTTIHFIPSIPD 385
Score = 54.4 bits (131), Expect = 2e-09
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAA 66
LS K L L L L+ NQ+R++ F L L S++ N I V
Sbjct: 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167
Query: 67 FSGLEDNPL 75
L+ L
Sbjct: 168 LEPLQGKTL 176
Score = 53.7 bits (129), Expect = 3e-09
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 9 LSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI-HTVDPAAF 67
L+ + + L+ + L+L+ N +RT+ F L L LEL + T+D AF
Sbjct: 16 LTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69
Query: 68 SGL 70
L
Sbjct: 70 RNL 72
Score = 53.3 bits (128), Expect = 4e-09
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ + ++ L L+H + ++ RVF L L L L N I+ + AF
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310
Query: 68 SGL 70
GL
Sbjct: 311 YGL 313
Score = 51.7 bits (124), Expect = 2e-08
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L +L L LA+N++ I F L L L L N + + + F GL
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337
Score = 51.7 bits (124), Expect = 2e-08
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 21 GLHNLDSLVLAHNQL-RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L L TI F +LP L L+L + I+ + P AF GL
Sbjct: 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96
Score = 51.7 bits (124), Expect = 2e-08
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH--TVDPAAFSGL 70
L NL L L +++ + P F L L L L + + F L
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122
Score = 47.9 bits (114), Expect = 4e-07
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLR-----TIPPRVFAHLPLLNSLELDGNHIHTV 62
+ SS T +L+ L L N L+ + VF L L L L+ N+++++
Sbjct: 437 RFSSC-SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495
Query: 63 DPAAFSGLE 71
P FS L
Sbjct: 496 PPGVFSHLT 504
Score = 47.1 bits (112), Expect = 6e-07
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 21 GLHNLDSLVLAHNQLR--TIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGL 70
GL +L L L L + F +L L L+L N I ++ +F L
Sbjct: 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147
Score = 44.8 bits (106), Expect = 4e-06
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLN--SLELDGNHIHTVDPAAFSGL 70
H++ + ++ FA L + L+L + +++ F L
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289
Score = 43.3 bits (102), Expect = 1e-05
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHL--PLLNSLELDGNHIHTVDPAAFSGL 70
G L++L S+ + NQ+ + L L+ L N +++ +
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197
Score = 39.8 bits (93), Expect = 2e-04
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 21 GLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIH-----TVDPAAFSGL 70
+ +L L+L N+ + + P L L L N + + F GL
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479
Score = 36.3 bits (84), Expect = 0.003
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 32 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L +P L L L N+I TV ++F LE
Sbjct: 13 FCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLE 48
Score = 36.3 bits (84), Expect = 0.003
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 25/91 (27%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHL-------------------PL 48
L ++ GL + + L N + I + F L P
Sbjct: 325 LLGELYSSNFY--GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382
Query: 49 LNSLELDGNHIHTVDPAAFSG----LEDNPL 75
+ + L GN + T+ + L +N L
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Score = 34.0 bits (78), Expect = 0.020
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 24 NLDSLVLAHNQLRTIPPRVF-AHLPLLNSLELDGNHIHTVDP-AAFSGLE 71
+ + L+ N+L + F +P L L L+ N + S
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451
Score = 33.6 bits (77), Expect = 0.025
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 12/78 (15%)
Query: 10 SSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAH------------LPLLNSLELDGN 57
S + K L+ L ++ N F++ + +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250
Query: 58 HIHTVDPAAFSGLEDNPL 75
+I D F+GL + +
Sbjct: 251 NIKDPDQNTFAGLARSSV 268
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 63.8 bits (155), Expect = 1e-12
Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 12/156 (7%)
Query: 17 ATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE----- 71
+ L L L+HN L + L +L LD N I T+ + L+
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLS 353
Query: 72 DNPLVCTCDLMWYKEWSTSLGEKEDEQ-----MSRKRTVCTLGSSNVHQREIKLSDLPKQ 126
N C ++ + + D+ C R ++ L
Sbjct: 354 HNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTS- 412
Query: 127 LVCEGEKGGRRSPNSAPSASLSGSFIALLVAAADLV 162
+V + ++ R + S+ + +
Sbjct: 413 VVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPL 448
Score = 59.9 bits (145), Expect = 2e-11
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
H + L + N +R +PP VF ++PLL L L+ N + ++ F
Sbjct: 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146
Score = 58.8 bits (142), Expect = 5e-11
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L+N + ++ +R +P + + L L+ I +D AF+
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 98
Score = 58.8 bits (142), Expect = 6e-11
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ L LVL N L ++P +F + P L +L + N++ ++ F
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170
Score = 58.8 bits (142), Expect = 6e-11
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
+ + + A ++ L L Q+ I FA+ + L + N I
Sbjct: 56 VTFKNSTMRKL--PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113
Query: 62 VDPAAFSGL 70
+ P F +
Sbjct: 114 LPPHVFQNV 122
Score = 58.0 bits (140), Expect = 1e-10
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L +L +++N L I F L +L+L N + VD + L
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195
Score = 53.4 bits (128), Expect = 4e-09
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L + L++N+L I F + L L + N + + +
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI 300
Score = 49.5 bits (118), Expect = 9e-08
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
++ + L L L HN L + P L ++L N + + F
Sbjct: 222 SINVV-----RGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPF 274
Query: 68 SGL 70
+
Sbjct: 275 VKM 277
Score = 44.9 bits (106), Expect = 3e-06
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 16/67 (23%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHL----------------PLLNSLELDGNHIHTVDP 64
+L +L L+ N+L + + L + L+ N I+ V
Sbjct: 169 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 228
Query: 65 AAFSGLE 71
L
Sbjct: 229 PVNVELT 235
Score = 34.1 bits (78), Expect = 0.017
Identities = 4/48 (8%), Positives = 10/48 (20%), Gaps = 5/48 (10%)
Query: 28 LVLAHNQLRTIPPRVFA-----HLPLLNSLELDGNHIHTVDPAAFSGL 70
V + V+ L + + + + A
Sbjct: 27 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74
Score = 26.0 bits (57), Expect = 7.5
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 32 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPL 75
+N P L HI + G ED L
Sbjct: 7 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL 50
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 63.1 bits (154), Expect = 1e-12
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 17 ATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE----- 71
+ L L L+HN L + L +L LD N I T+ + L+
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLS 347
Query: 72 DNPLVCTCDLMWYKEWS 88
N C ++ +
Sbjct: 348 HNDWDCNSLRALFRNVA 364
Score = 59.7 bits (145), Expect = 2e-11
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ L LVL N L ++P +F + P L +L + N++ ++ F
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164
Score = 59.3 bits (144), Expect = 3e-11
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
H + L + N +R +PP VF ++PLL L L+ N + ++ F
Sbjct: 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140
Score = 59.3 bits (144), Expect = 4e-11
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
++ L L Q+ I FA+ + L + N I + P F +
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116
Score = 58.1 bits (141), Expect = 8e-11
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L+N + ++ +R +P + + L L+ I +D AF+
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 92
Score = 58.1 bits (141), Expect = 9e-11
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L +L +++N L I F L +L+L N + VD + L
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189
Score = 53.1 bits (128), Expect = 5e-09
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L + L++N+L I F + L L + N + + +
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI 294
Score = 49.7 bits (119), Expect = 7e-08
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
++ + L L L HN L + P L ++L N + + F
Sbjct: 216 SINVV-----RGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPF 268
Query: 68 SGL 70
+
Sbjct: 269 VKM 271
Score = 44.6 bits (106), Expect = 4e-06
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 16/67 (23%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLN----------------SLELDGNHIHTVDP 64
+L +L L+ N+L + + L N L+ N I+ V
Sbjct: 163 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222
Query: 65 AAFSGLE 71
L
Sbjct: 223 PVNVELT 229
Score = 33.5 bits (77), Expect = 0.025
Identities = 4/48 (8%), Positives = 10/48 (20%), Gaps = 5/48 (10%)
Query: 28 LVLAHNQLRTIPPRVFA-----HLPLLNSLELDGNHIHTVDPAAFSGL 70
V + V+ L + + + + A
Sbjct: 21 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 61.6 bits (150), Expect = 5e-12
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
GL +L +LVL +N++ I + F+ L L L + NH+ + P S L
Sbjct: 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV 126
Score = 58.5 bits (142), Expect = 7e-11
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 19 SGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L+ L L HN+++ I L L L N I ++ + S L
Sbjct: 189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240
Score = 57.7 bits (140), Expect = 1e-10
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L HNQ+R I + LP L L LD N + V PA L
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDL 263
Score = 55.8 bits (135), Expect = 4e-10
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
++S I EK + L L L ++ N L IPP + + L L + N I V F
Sbjct: 89 KISKIHEKAFS--PLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIRKVPKGVF 143
Query: 68 SGLE 71
SGL
Sbjct: 144 SGLR 147
Score = 55.4 bits (134), Expect = 7e-10
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ L L +N + + F L L +L L N I + AFS L
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101
Score = 53.9 bits (130), Expect = 2e-09
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDN 73
L L L L +N+L +P L LL + L N+I V F +
Sbjct: 239 FLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290
Score = 53.1 bits (128), Expect = 5e-09
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH--TVDPA 65
L I +L L + N++R +P VF+ L +N +E+ GN + +P
Sbjct: 113 HLVEI-----PPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167
Query: 66 AFSGL 70
AF GL
Sbjct: 168 AFDGL 172
Score = 50.8 bits (122), Expect = 3e-08
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHL------PLLNSLELDGNHI--HTVDPAAFSGL 70
L L + L N + + F + N + L N + V PA F +
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319
Score = 50.4 bits (121), Expect = 3e-08
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L+ L ++ +L IP + LN L LD N I ++
Sbjct: 173 KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRY 216
Score = 46.2 bits (110), Expect = 9e-07
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 21 GLHNLDSLVLAHNQLR--TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
GL N++ + + N L P F L L L + + + L
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLN-YLRISEAKLTGIPKDLPETLN 196
Score = 37.7 bits (88), Expect = 7e-04
Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 8 QLSSI----FEKVATSGGLHNLDSLVLAHNQL--RTIPPRVFAHLPLLNSLELDGN 57
++ + F V + + L +N + + P F + +++
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 61.0 bits (148), Expect = 8e-12
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDN 73
+ L L N++++IP +V L L L + N + +V F L N
Sbjct: 420 PPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Query: 74 PLVCTCDLMWY-KEW 87
P C+C + Y W
Sbjct: 479 PWDCSCPRIDYLSRW 493
Score = 49.9 bits (119), Expect = 8e-08
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L ++ N + + L L L + N I +D + F
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN 68
Score = 47.9 bits (114), Expect = 4e-07
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+S ++ L L L+++HN+++ + VF L L+L N + +
Sbjct: 32 YISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPT 89
Query: 68 SGL 70
L
Sbjct: 90 VNL 92
Score = 46.8 bits (111), Expect = 7e-07
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAA 66
+L I + NL L L+ N +P + F ++ L L L H+
Sbjct: 80 KLVKI-----SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134
Query: 67 FSGLEDNPL 75
+ L + +
Sbjct: 135 IAHLNISKV 143
Score = 44.5 bits (105), Expect = 5e-06
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA--FSGL 70
+ L ++N L HL L +L L N + + A + +
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373
Score = 44.1 bits (104), Expect = 7e-06
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP--RVFAHLPLLNSLELDGNHIHTVDPA 65
L+ + G L L++L+L NQL+ + + + L L++ N + +
Sbjct: 335 LLTDTVFEN--CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392
Query: 66 -AFSGLE 71
S +
Sbjct: 393 GDCSWTK 399
Score = 37.2 bits (86), Expect = 0.001
Identities = 5/50 (10%), Positives = 13/50 (26%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
N++ + R + + + L+ N + L
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347
Score = 33.7 bits (77), Expect = 0.022
Identities = 5/49 (10%), Positives = 12/49 (24%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L + + ++ +N + V S +
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 60.0 bits (146), Expect = 2e-11
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L NL +L+L +N++ I P FA L L L L N + + L+
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ 124
Score = 59.6 bits (145), Expect = 2e-11
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+++I G +L L L N++ + L L L L N I VD +
Sbjct: 182 NITTI-----PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 68 SGL 70
+
Sbjct: 237 ANT 239
Score = 58.9 bits (143), Expect = 4e-11
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL+NL L L+ N + + A+ P L L L+ N + V P +
Sbjct: 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADH 262
Score = 55.4 bits (134), Expect = 7e-10
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 21 GLHNLDSLVLAHNQLRT--IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
GL+ + + L N L++ I F + L+ + + +I T+ L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195
Score = 55.0 bits (133), Expect = 1e-09
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G+ L + +A + TIP + L L LDGN I VD A+ GL
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGL 215
Score = 55.0 bits (133), Expect = 1e-09
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT--VDPA 65
QL + L L + N++ + VF L + +EL N + + ++
Sbjct: 111 QLKEL-----PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 66 AFSGL 70
AF G+
Sbjct: 166 AFQGM 170
Score = 54.6 bits (132), Expect = 1e-09
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ L L +N++ I F +L L++L L N I + P AF+ L
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99
Score = 54.2 bits (131), Expect = 2e-09
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
++S I L L+ L L+ NQL+ +P ++ L L + N I V + F
Sbjct: 87 KISKISPGAFA--PLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVRKSVF 141
Query: 68 SGL 70
+GL
Sbjct: 142 NGL 144
Score = 49.2 bits (118), Expect = 1e-07
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+L L L +N+L +P A + + L N+I + F
Sbjct: 238 NTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 48.1 bits (115), Expect = 2e-07
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFA------HLPLLNSLELDGNHIHT--VDPAAFSGL 70
+ + L +N + I F + + L N + + P+ F +
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318
Score = 43.5 bits (103), Expect = 9e-06
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 8 QLSSI----FEKVATSGGLHNLDSLVLAHNQLRT--IPPRVFAHLPLLNSLELDGN 57
+S+I F + + + L N ++ I P F + + +++L
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR
hybrid, MD-2, LPS, glycoprotein response, inflammatory
response, innate immunity; HET: NAG FUL BMA; 1.70A
{Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 59.6 bits (145), Expect = 2e-11
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L+ +++TI + L L++L L GN I ++ AFSGL
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99
Score = 59.6 bits (145), Expect = 2e-11
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 8 QLSSIFEKVATSGGLHNLD----SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63
++ SI+ LH + SL L+ N + I P F + L L LD N + +V
Sbjct: 160 KIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVP 216
Query: 64 PAAFSG--------LEDNPLVCTC-DLMWYKEW 87
F L NP C+C + + W
Sbjct: 217 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249
Score = 58.4 bits (142), Expect = 5e-11
Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
++ +I + L +L +L+L N ++++ F+ L L L ++ +++
Sbjct: 63 EIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 68 SGL 70
L
Sbjct: 121 GHL 123
Score = 58.1 bits (141), Expect = 7e-11
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAA 66
L+S+ G L L L +AHN +++ P F++L L L+L N I ++
Sbjct: 111 NLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 67 FSGL 70
L
Sbjct: 169 LRVL 172
Score = 57.3 bits (139), Expect = 1e-10
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAA 66
+ S+ + GL +L LV L ++ HL L L + N I + P
Sbjct: 87 PIQSL--ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 67 FSGL 70
FS L
Sbjct: 145 FSNL 148
Score = 52.7 bits (127), Expect = 5e-09
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ +L L+ N LR + F P L L+L I T++ A+ L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 59.4 bits (144), Expect = 3e-11
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
NL +LVL N + TI F+ L L L+L N++ + + F L
Sbjct: 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL 123
Score = 59.0 bits (143), Expect = 4e-11
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ I K GL L+ L + + L++ P+ + ++ L L +
Sbjct: 161 TFTKIQRKDFA--GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218
Query: 68 SGL 70
Sbjct: 219 DVT 221
Score = 58.2 bits (141), Expect = 7e-11
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA-AFSGL 70
L +L+ L L++N L + F L L L L GN T+ FS L
Sbjct: 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148
Score = 55.9 bits (135), Expect = 4e-10
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ SL L++N++ I L +L L N I+T++ +FS L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Score = 55.5 bits (134), Expect = 7e-10
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 17/90 (18%)
Query: 11 SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
S+F+ + + L L + NQL+++P +F L L + L
Sbjct: 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT-------------- 310
Query: 71 EDNPLVCTC-DLMWYKEWSTSLGEKEDEQM 99
NP C+C + + W +KE
Sbjct: 311 --NPWDCSCPRIDYLSRWLNKNSQKEQGSA 338
Score = 55.1 bits (133), Expect = 9e-10
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 66
++ E + L L L + + I + FA L L LE+D + + + +P +
Sbjct: 135 PYKTLGET-SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193
Query: 67 FSGL 70
+
Sbjct: 194 LKSI 197
Score = 49.3 bits (118), Expect = 9e-08
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
+EI L S K + N+ L+L Q + + LEL + T
Sbjct: 179 LEIDASDLQSYEPKSLK--SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236
Query: 62 VDPAAFSGLEDNPLVCTCDL 81
+ S E N L+
Sbjct: 237 FHFSELSTGETNSLIKKFTF 256
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 58.6 bits (142), Expect = 4e-11
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
QL S+ V L L L L NQL++IP F L L +L L N + +V AF
Sbjct: 118 QLKSLPSGVFDR--LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 68 SG--------LEDNPLVCTC-DLMWYKEW 87
L N C+ ++++ +W
Sbjct: 176 DRLGKLQTITLFGNQFDCSRCEILYLSQW 204
Score = 45.8 bits (109), Expect = 1e-06
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
L+++ + GL L L L +NQL+T+ VF L L +L L N + ++ F
Sbjct: 46 GLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF 103
Query: 68 SGL 70
L
Sbjct: 104 DHL 106
Score = 45.5 bits (108), Expect = 1e-06
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L +L LA+NQL ++P VF HL L+ L L GN + ++ F L
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Score = 40.8 bits (96), Expect = 6e-05
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 26 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ L L L T+ F L L L LD N + T+ F L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 52.9 bits (127), Expect = 9e-10
Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 24/117 (20%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMW 83
+ LVL N L +PP + LP L + L NP C C L+
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGA----------------NPWRCDCRLVP 75
Query: 84 YKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEKGGRRSP 139
+ W E+ + C + R L L + +L G S
Sbjct: 76 LRAWLAGRP----ERAPYRDLRC---VAPPALRGRLLPYLAEDELRAACAPGPLSSH 125
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 54.9 bits (132), Expect = 1e-09
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+S + + ++ LA+N++ + + L+L N I TV+ A
Sbjct: 110 NISRV-----SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 68 SGLEDN 73
+ D
Sbjct: 165 AASSDT 170
Score = 54.1 bits (130), Expect = 2e-09
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 12/116 (10%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDN 73
L +L L+ N+L + P F + + L N + + A L N
Sbjct: 190 FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN 247
Query: 74 PLVCTCDLMWYKEWS--TSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQL 127
C ++ + ++ ++ ++++ + + H DLP
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303
Score = 52.5 bits (126), Expect = 8e-09
Identities = 6/49 (12%), Positives = 16/49 (32%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ + + L+ + + L+L GN + + A +
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57
Score = 49.8 bits (119), Expect = 6e-08
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
N+ L L+ N L I A L L L N ++ L
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--LDLESL 79
Score = 47.9 bits (114), Expect = 3e-07
Identities = 6/63 (9%), Positives = 18/63 (28%), Gaps = 10/63 (15%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ + ++++L A+N + + ++ L N I +
Sbjct: 91 YVQEL-------LVGPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDE 140
Query: 68 SGL 70
Sbjct: 141 GCR 143
Score = 47.9 bits (114), Expect = 3e-07
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L +L L +N ++ + P + +L N+I V + G +
Sbjct: 77 ESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQGKK 123
Score = 46.8 bits (111), Expect = 8e-07
Identities = 9/64 (14%), Positives = 14/64 (21%)
Query: 7 GQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 66
GQ S + Q RT+ +V +LE +
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379
Query: 67 FSGL 70
Sbjct: 380 RRAH 383
Score = 43.3 bits (102), Expect = 1e-05
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ + L +N+L I L +L GN H F
Sbjct: 211 QSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDF 257
Score = 42.9 bits (101), Expect = 2e-05
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L+ L L+ N L L L +L+L+ N++ +
Sbjct: 55 APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV 97
Score = 29.8 bits (67), Expect = 0.44
Identities = 0/29 (0%), Positives = 7/29 (24%)
Query: 42 VFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ + ++ + + +
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSA 33
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 54.8 bits (132), Expect = 1e-09
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAAFSGLEDN 73
L NL L++++ ++ +P H L++ N +IHT++ +F GL
Sbjct: 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155
Score = 52.9 bits (127), Expect = 5e-09
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ +I E+ + G L L N ++ I F L D N++ + F
Sbjct: 140 NIHTI-ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198
Query: 68 SGLED 72
G
Sbjct: 199 HGASG 203
Score = 52.9 bits (127), Expect = 6e-09
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI-HTVDPAAFSGL 70
N L +LR I F+ L +E+ N + ++ FS L
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78
Score = 52.5 bits (126), Expect = 8e-09
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 21 GLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L + + N L I P F +LP L L + I +
Sbjct: 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
Score = 51.8 bits (124), Expect = 1e-08
Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 27/97 (27%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------- 71
G + + +N L +P VF L++ IH++ L+
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235
Query: 72 ------------------DNPLVCTCDLMWYKEWSTS 90
P C W ++ S
Sbjct: 236 LKKLPTLEKLVALMEASLTYPSHCCAFANWRRQISEL 272
Score = 50.6 bits (121), Expect = 3e-08
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 21 GLHNLDSLVLAHNQ-LRTIPPRVFAHLPLLNSLEL-DGNHIHTVDPAAFSGL 70
G +L+ + ++ N L I VF++LP L+ + + N++ ++P AF L
Sbjct: 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103
Score = 36.0 bits (83), Expect = 0.003
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ + +++ IP + + L + + AFSG
Sbjct: 10 SNRVFLCQESKVTEIPSDLPRN---AIELRFVLTKLRVIQKGAFSGF 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 54.6 bits (132), Expect = 1e-09
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+S + + ++ LA+N++ + + L+L N I TV+ A
Sbjct: 110 NISRV-----SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 68 SGLEDN 73
+ D
Sbjct: 165 AASSDT 170
Score = 52.3 bits (126), Expect = 7e-09
Identities = 6/49 (12%), Positives = 16/49 (32%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ + + L+ + + L+L GN + + A +
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57
Score = 49.6 bits (119), Expect = 6e-08
Identities = 17/150 (11%), Positives = 44/150 (29%), Gaps = 35/150 (23%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD---- 63
++ ++ + L+ L L +N + + +V L +L+L N + +
Sbjct: 155 EIDTV-NFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQ 211
Query: 64 ------------------PAAFSG--------LEDNPLVCTCDLMWYKEWS--TSLGEKE 95
A L N C ++ + ++ ++
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Query: 96 DEQMSRKRTVCTLGSSNVHQREIKLSDLPK 125
++++ + + H DLP
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
Score = 49.6 bits (119), Expect = 8e-08
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
N+ L L+ N L I A L L L N ++ L
Sbjct: 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL 79
Score = 48.1 bits (115), Expect = 2e-07
Identities = 6/63 (9%), Positives = 18/63 (28%), Gaps = 10/63 (15%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ + ++++L A+N + + ++ L N I +
Sbjct: 91 YVQEL-------LVGPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDE 140
Query: 68 SGL 70
Sbjct: 141 GCR 143
Score = 46.9 bits (112), Expect = 5e-07
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L +L L +N ++ + P + +L N+I V + G +
Sbjct: 77 ESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQGKK 123
Score = 43.8 bits (104), Expect = 7e-06
Identities = 14/104 (13%), Positives = 21/104 (20%), Gaps = 1/104 (0%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC 79
+ + L +N+L I L +L GN H F
Sbjct: 211 QSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269
Query: 80 DLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDL 123
+ C + R I L
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHH 313
Score = 41.5 bits (98), Expect = 4e-05
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L+ L L+ N L L L +L+L+ N++ +
Sbjct: 55 APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV 97
Score = 29.2 bits (66), Expect = 0.58
Identities = 0/29 (0%), Positives = 7/29 (24%)
Query: 42 VFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ + ++ + + +
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSA 33
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 53.9 bits (130), Expect = 2e-09
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAAFSGL 70
+ +L L LRTIP F++LP ++ + + + + ++ +F L
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL 79
Score = 52.7 bits (127), Expect = 4e-09
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 21 GLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAAFSGL 70
L N+ + ++ + L+ + F +L + +E+ ++ +DP A L
Sbjct: 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104
Score = 50.4 bits (121), Expect = 3e-08
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 21 GLHNLDSLVLAHNQ-LRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAAFSGLE 71
L + + + + + L I P LPLL L + + D +
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130
Score = 49.2 bits (118), Expect = 6e-08
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLP-LLNSLELDGNHIHTVDPA 65
L + L + N + +IP F L +L+L N +V
Sbjct: 116 GLKMFPDLTKVYS-TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174
Query: 66 AFSGL 70
AF+G
Sbjct: 175 AFNGT 179
Score = 48.5 bits (116), Expect = 1e-07
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAH-LPLLNSLEL-DGNHIHTVDPAAFSGL 70
L L L + + L+ P + + LE+ D ++ ++ AF GL
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154
Score = 48.5 bits (116), Expect = 1e-07
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 21 GLHN-LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAAFSGLEDNP 74
GL N +L L +N ++ F L ++ L+ N ++ +D AF G+ P
Sbjct: 153 GLCNETLTLKLYNNGFTSVQGYAFNGTKLD-AVYLNKNKYLTVIDKDAFGGVYSGP 207
Score = 45.0 bits (107), Expect = 2e-06
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 24 NLDSLVLAHNQ-LRTIPPRVFAHLP-LLNSLELDGNHIHTVDPAAFSGLE 71
LD++ L N+ L I F + + L++ + + L+
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK 229
Score = 36.1 bits (84), Expect = 0.002
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 54
L+ I +K A G L ++ + +P + HL L +
Sbjct: 191 YLTVI-DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 54.5 bits (131), Expect = 2e-09
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDNPL 75
+ L L +N++ +IP V HL L L + N + +V F L DNP
Sbjct: 451 KVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 76 VCTC-DLMWYKEW 87
CTC + + EW
Sbjct: 510 DCTCPGIRYLSEW 522
Score = 49.1 bits (117), Expect = 1e-07
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-----DNPL 75
L L L L+HN++R++ VF L L++ N + + + L N
Sbjct: 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDF 133
Query: 76 VC 77
Sbjct: 134 DV 135
Score = 46.8 bits (111), Expect = 8e-07
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+L L+ N + + + L L L L N I ++D F
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99
Score = 45.2 bits (107), Expect = 3e-06
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDPAA 66
+L +I + + +L L L+ N +P + F +L L L L +D
Sbjct: 111 RLQNI-----SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165
Query: 67 FSGLE 71
+ L
Sbjct: 166 VAHLH 170
Score = 42.2 bits (99), Expect = 3e-05
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 19 SGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ L N + + L L +L L N + A
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397
Score = 34.5 bits (79), Expect = 0.013
Identities = 6/50 (12%), Positives = 11/50 (22%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
++ +L+ + I L N S L
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 49.2 bits (118), Expect = 4e-08
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 8 QLSS----IFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63
Q+ S +F+K L L L L N+L+++P VF L L L LD N + +V
Sbjct: 63 QIQSLPDGVFDK------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Query: 64 PAAFSGLE--------DNPLVCTC-DLMWYKEW 87
F L NP C+C + + W
Sbjct: 117 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 149
Score = 43.8 bits (104), Expect = 3e-06
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L L+ NQ++++P VF L L L L N + ++ F L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99
Score = 36.9 bits (86), Expect = 0.001
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 26 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L N+L+++P VF L L L L N I ++ F L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 50.6 bits (121), Expect = 4e-08
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 9/65 (13%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG---------L 70
G L L L +NQ+ IP A + L N + + +
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651
Query: 71 EDNPL 75
N +
Sbjct: 652 SYNKI 656
Score = 49.1 bits (117), Expect = 1e-07
Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN-----SLELDGNHIHTV 62
+L I + + ++ + S+ ++N++ + + + ++ L N I
Sbjct: 630 KLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688
Query: 63 DPAAFSGL 70
F+
Sbjct: 689 PTELFATG 696
Score = 48.7 bits (116), Expect = 2e-07
Identities = 11/69 (15%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 8 QLSSIFEKVATSGG---LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
++ S ++ S N ++ L++N+++ P +FA ++++ L N + ++
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714
Query: 65 AAFSGLEDN 73
+ + N
Sbjct: 715 NSLKPKDGN 723
Score = 47.2 bits (112), Expect = 6e-07
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED 72
+ L L HN++R + F L L+LD N I + + +
Sbjct: 570 QKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620
Score = 46.0 bits (109), Expect = 1e-06
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAH-LPLLNSLELDGNHIHTVDPAA 66
Q+ I E ++ L +HN+L+ IP A + ++ S++ N I +
Sbjct: 606 QIEEIPEDF--CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663
Query: 67 FSGLEDNPLV 76
++D +
Sbjct: 664 SCSMDDYKGI 673
Score = 44.5 bits (105), Expect = 6e-06
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFA-----HLPLLNSLELDGNHIHTV 62
+L+S+ + + L L ++ +++N + P + + + + +GN I
Sbjct: 739 KLTSLSDDFR-ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797
Query: 63 DPAAFSGL 70
P +
Sbjct: 798 WPTGITTC 805
Score = 43.7 bits (103), Expect = 1e-05
Identities = 17/76 (22%), Positives = 22/76 (28%), Gaps = 8/76 (10%)
Query: 8 QLSSIFEKVATSGGLHNLD---SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
SS + S L N++ P P L L++ N I VD
Sbjct: 764 CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823
Query: 65 AAFSGLE-----DNPL 75
L DNP
Sbjct: 824 KLTPQLYILDIADNPN 839
Score = 43.7 bits (103), Expect = 1e-05
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 8 QLSSIFEKVATS-----GGLHNLDSLVLAHNQLRTIPPRV-FAHLPLLNSLELDGNHIHT 61
++SI E + L ++ L N+L ++ LP L+++++ N +
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767
Query: 62 VDPAAFSGL 70
P
Sbjct: 768 F-PTQPLNS 775
Score = 42.2 bits (99), Expect = 3e-05
Identities = 10/76 (13%), Positives = 18/76 (23%), Gaps = 19/76 (25%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ + EK+ L L +A N +I L +
Sbjct: 817 DIRKVDEKL-----TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK--------- 862
Query: 68 SGLEDNPLVCTCDLMW 83
+ CD +
Sbjct: 863 -----TQDIRGCDALG 873
Score = 40.6 bits (95), Expect = 1e-04
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68
L +L + L + T P LP L SL + N +
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536
Score = 39.9 bits (93), Expect = 2e-04
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 10/61 (16%)
Query: 20 GGLHNLDSLVLAHNQLRTIP---------PRVFAHLPLLNSLELDGNHIHTV-DPAAFSG 69
L L SL +A N+ + P + + N++ A+
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571
Query: 70 L 70
+
Sbjct: 572 M 572
Score = 37.2 bits (86), Expect = 0.002
Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 5/51 (9%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L + A++ V + + N ++S L
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-----ELSWSNL 490
Score = 36.0 bits (83), Expect = 0.004
Identities = 10/69 (14%), Positives = 16/69 (23%), Gaps = 6/69 (8%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
+++WG Q + L LA + P L L L +
Sbjct: 308 LDMWGDQPGVDL------DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361
Query: 62 VDPAAFSGL 70
Sbjct: 362 SGRLFGDEE 370
Score = 32.5 bits (74), Expect = 0.052
Identities = 11/108 (10%), Positives = 27/108 (25%), Gaps = 7/108 (6%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC 79
G L L L + + E + I F + L +
Sbjct: 344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR-LNLSD 402
Query: 80 DLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQL 127
L + + + + + +N +++ + K +
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN------RITFISKAI 444
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 48.8 bits (117), Expect = 6e-08
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73
L NL L N+L IP VF L L L+L+ NH+ ++ AF L+ +N
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Query: 74 PLVCTC-DLMWYKEW 87
P C C D+M+ + W
Sbjct: 116 PWDCECRDIMYLRNW 130
Score = 36.8 bits (86), Expect = 0.001
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ L L +NQ+ + P VF HL L L + N + + F
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 49.3 bits (118), Expect = 6e-08
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 19/93 (20%)
Query: 8 QLSS----IFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63
QL S +F+K L L L L NQL+++P VF L L L L N + +V
Sbjct: 87 QLQSLPNGVFDK------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140
Query: 64 PAAFSGLE--------DNPLVCTC-DLMWYKEW 87
F L DNP CTC + + EW
Sbjct: 141 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 173
Score = 41.6 bits (98), Expect = 3e-05
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
L +L L L+ NQL+++P VF L L L L+ N + ++ F
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF 120
Score = 39.7 bits (93), Expect = 1e-04
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L +L L L N+L+++P VF L L L L N + ++ F L
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99
Score = 35.8 bits (83), Expect = 0.003
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 26 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L N L+++P VF L L L L GN + ++ F+ L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 48.8 bits (117), Expect = 6e-08
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73
L L L L +NQL +P VF L L L L+ N + ++ AF L+ +N
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Query: 74 PLVCTC-DLMWYKEW 87
P C C D+++ W
Sbjct: 113 PWDCACSDILYLSRW 127
Score = 37.6 bits (88), Expect = 6e-04
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
L L NQ+ + P VF L L L+LD N + + F
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 49.7 bits (119), Expect = 8e-08
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 8 QLSSIFEKVATS-----GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 62
++ S+ K N+ S+ L++NQ+ P +F+ L+S+ L GN + +
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472
Query: 63 DPAAFSGLEDN 73
+ +N
Sbjct: 473 PKNSLKDENEN 483
Score = 48.9 bits (117), Expect = 2e-07
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69
G L SL LA+NQ+ IP + +L N + + +
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399
Score = 46.6 bits (111), Expect = 8e-07
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAH-LPLLNSLELDGNHIHTVDPAA 66
Q++ I G +++L AHN+L+ IP A + ++++++ N I +VD
Sbjct: 364 QITEI--PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
Query: 67 FSGLEDNPLVCT 78
F L+ P
Sbjct: 422 FDPLDPTPFKGI 433
Score = 43.9 bits (104), Expect = 7e-06
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 6 GGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDP 64
G QL ++ +A + + + + +N L+T P + L LE N +
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-L 346
Query: 65 AAFSGL 70
AF
Sbjct: 347 PAFGSE 352
Score = 43.9 bits (104), Expect = 7e-06
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPL-------LNSLELDGNHIH 60
+L I + + + + ++ ++N++ ++ + F L ++S+ L N I
Sbjct: 388 KLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446
Query: 61 TVDPAAFSGL 70
FS
Sbjct: 447 KFPKELFSTG 456
Score = 42.3 bits (100), Expect = 2e-05
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-----DNPL 75
G + N+ P P L L++ N I V+ + DNP
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPN 599
Query: 76 VCT 78
+
Sbjct: 600 ISI 602
Score = 39.3 bits (92), Expect = 3e-04
Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 5/64 (7%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
+ + EK+ N+ L + N +I L + +
Sbjct: 577 DIRKVNEKI-----TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631
Query: 68 SGLE 71
++
Sbjct: 632 LDIK 635
Score = 38.5 bits (90), Expect = 5e-04
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 8 QLSSIFEKVATS-----GGLHNLDSLVLAHNQLRTIPPRV-FAHLPLLNSLELDGNHIHT 61
L+ I + + L S+ L N+L + LP L ++L N
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527
Query: 62 VDPAAFS 68
+
Sbjct: 528 FPTQPLN 534
Score = 34.2 bits (79), Expect = 0.014
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69
L +L + + + T P LP + + + N + +
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295
Score = 31.6 bits (72), Expect = 0.12
Identities = 7/41 (17%), Positives = 9/41 (21%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
+ L L P L L L L +
Sbjct: 78 NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK 118
Score = 31.2 bits (71), Expect = 0.16
Identities = 3/51 (5%), Positives = 11/51 (21%), Gaps = 5/51 (9%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L + ++ + + + + + L
Sbjct: 203 MRLTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNL 248
Score = 28.1 bits (63), Expect = 1.6
Identities = 5/53 (9%), Positives = 12/53 (22%), Gaps = 1/53 (1%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED 72
+ N + + V L L + + + E+
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAVM-RLTKLRQFYMGNSPFVAENICEAWENEN 231
Score = 27.7 bits (62), Expect = 2.0
Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 9/65 (13%)
Query: 20 GGLHNLDSLVLAHNQLR---------TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L L+ L L + + I + + + FS L
Sbjct: 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161
Query: 71 EDNPL 75
+ +
Sbjct: 162 IKDCI 166
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 47.2 bits (113), Expect = 4e-07
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LE 71
L L L + NQ+ I +L LNSL L+ N + D G L
Sbjct: 262 KDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319
Query: 72 DNPL 75
N +
Sbjct: 320 QNHI 323
Score = 46.4 bits (111), Expect = 8e-07
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L+SL L +NQL V L L +L L NHI + P + L
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332
Score = 46.0 bits (110), Expect = 1e-06
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ L+ L + ++++ + P A+L L SL L+ N I + P + L
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASL 198
Score = 43.7 bits (104), Expect = 8e-06
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L +L SL L +NQ+ I P A L L+ N I + P + +
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANM 220
Score = 42.5 bits (101), Expect = 2e-05
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L L + NQ+ I L L L + N I + + L
Sbjct: 240 ANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLS 287
Score = 41.0 bits (97), Expect = 7e-05
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL L L + + I P A+L + SL L NH + D + S +
Sbjct: 107 QNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNM 154
Score = 41.0 bits (97), Expect = 7e-05
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
+ L+SL + +N++ + P A+L L LE+ N I ++
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA 260
Score = 40.6 bits (96), Expect = 8e-05
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL+ L L NQ+ I P ++L L +L + N I + L
Sbjct: 63 EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNL 109
Score = 40.2 bits (95), Expect = 1e-04
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59
GGL NL +L L+ N + I P A L ++S + I
Sbjct: 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345
Score = 39.8 bits (94), Expect = 2e-04
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L +L + N++ I +L L L L+ ++I + P + L
Sbjct: 85 SNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANL 131
Score = 39.4 bits (93), Expect = 2e-04
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L + SL L N + +++ LN L + + + V P + L
Sbjct: 129 ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANL 176
Score = 38.7 bits (91), Expect = 3e-04
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L ++ LV+A ++ +I +L L L L+GN I + P S L
Sbjct: 41 EELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--LSNL 87
Score = 34.4 bits (80), Expect = 0.010
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L VL + + L + L + G + ++
Sbjct: 20 DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG 61
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 46.2 bits (110), Expect = 8e-07
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 19/93 (20%)
Query: 8 QLSS----IFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63
QL S +F+K L NL L L++NQL+++P VF L L L L N + +V
Sbjct: 144 QLQSLPKGVFDK------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 64 PAAFSGLE--------DNPLVCTC-DLMWYKEW 87
F L DNP CTC + + EW
Sbjct: 198 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 230
Score = 43.5 bits (103), Expect = 8e-06
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 8 QLSSI--FEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65
+L I ++ L NL L+L NQL+++P VF L L L L N + ++
Sbjct: 74 KLHDISALKE------LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127
Query: 66 AFSGL 70
F L
Sbjct: 128 VFDKL 132
Score = 41.5 bits (98), Expect = 4e-05
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
L NL L LAHNQL+++P VF L L L+L N + ++ F
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Score = 40.0 bits (94), Expect = 1e-04
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL LVL NQL+++P VF L L L L N + ++ F L
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156
Score = 38.1 bits (89), Expect = 6e-04
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L N+ L L N+L I L L L L GN + ++ F L
Sbjct: 62 LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKL 108
Score = 28.8 bits (65), Expect = 0.69
Identities = 9/47 (19%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 13 FEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59
T L+++D ++ ++ ++++ +LP + L L GN +
Sbjct: 31 VTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKL 75
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 45.1 bits (106), Expect = 3e-06
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L SL L HN + I HLP L SL L N I + S L
Sbjct: 107 DLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV--LSRL 152
Score = 44.7 bits (105), Expect = 4e-06
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L NL L L N+++ + L L SL L+ N I ++
Sbjct: 84 TNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING 126
Score = 43.9 bits (103), Expect = 8e-06
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L LD+L L NQ+ I P A L L +L L NHI +
Sbjct: 151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA 192
Score = 43.2 bits (101), Expect = 1e-05
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L N+ L L N+L I P +L L L LD N I +
Sbjct: 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS 104
Score = 42.0 bits (98), Expect = 4e-05
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L L+SL L +N++ I + L L++L L+ N I + P
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 170
Score = 39.7 bits (92), Expect = 2e-04
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLV 76
GL L +L L+ N + + A L L+ LEL S L V
Sbjct: 173 GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226
Score = 38.9 bits (90), Expect = 4e-04
Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 14 EKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
T L+++D ++ ++ ++++ +LP + L L+GN + + P
Sbjct: 34 TDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP 82
Score = 33.2 bits (75), Expect = 0.030
Identities = 16/70 (22%), Positives = 28/70 (40%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GL NLD L L + P ++L + N+++ + T + + G + P V
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHL 254
Query: 81 LMWYKEWSTS 90
+ E S
Sbjct: 255 PEFTNEVSFI 264
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 43.8 bits (104), Expect = 5e-06
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
HN+ L + + P + L L L + G + + SGL
Sbjct: 64 YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGL 111
Score = 42.6 bits (101), Expect = 1e-05
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL NL+ L + + + + L L L++ + + L
Sbjct: 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135
Score = 37.2 bits (87), Expect = 9e-04
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL +L L ++H+ LP +NS++L N T D L
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTL 158
Score = 37.2 bits (87), Expect = 0.001
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59
L L SL + + + P LN L I
Sbjct: 156 KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193
Score = 34.9 bits (81), Expect = 0.006
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 20 GGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L ++S+ L++N + I P LP L SL + + +H
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG 176
Score = 33.8 bits (78), Expect = 0.013
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 18 TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
T +++L + LA+ + + + + L ++ H +P SGL
Sbjct: 39 TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGL 87
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 43.0 bits (102), Expect = 1e-05
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLV 76
L N++ L HNQ+ + P A+L + L L+ + + V
Sbjct: 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404
Score = 42.6 bits (101), Expect = 2e-05
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L L L +N++ + A+L +N L N I + P
Sbjct: 328 SSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP 370
Score = 41.9 bits (99), Expect = 3e-05
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L+NL + ++NQL I P +L L + ++ N I + P + L
Sbjct: 65 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111
Score = 41.9 bits (99), Expect = 4e-05
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL L LA+NQ+ + P + L L L+L N I + P +GL
Sbjct: 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286
Score = 41.5 bits (98), Expect = 4e-05
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL+SL+ +NQ+ I P L L+ L L+GN + + + L
Sbjct: 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASL 242
Score = 41.5 bits (98), Expect = 4e-05
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
GL L L L NQ+ I P A L L +LEL+ N + + P
Sbjct: 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304
Score = 41.5 bits (98), Expect = 4e-05
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L NLD L L NQL+ I A L L L+L N I + P SGL
Sbjct: 218 GILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGL 264
Score = 41.5 bits (98), Expect = 5e-05
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL L L +NQ+ I P +L LN LEL N I + SGL
Sbjct: 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGL 155
Score = 41.5 bits (98), Expect = 5e-05
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
GL L +L L NQL I P ++L L L L N+I + P S L
Sbjct: 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL 330
Score = 40.7 bits (96), Expect = 8e-05
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L L+ L ++ N++ I A L L SL N I + P
Sbjct: 174 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP 216
Score = 39.6 bits (93), Expect = 2e-04
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L +++ +NQ+ I P A+L L L L N I +DP L
Sbjct: 87 KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNL 133
Score = 39.2 bits (92), Expect = 2e-04
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L NL L L N + I P + L L L N + V
Sbjct: 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348
Score = 34.6 bits (80), Expect = 0.012
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L + +L +++I +L L + N + + P L
Sbjct: 43 TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNL 89
Score = 34.2 bits (79), Expect = 0.013
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
GL +L L NQ+ + P A+L L L++ N + +
Sbjct: 153 SGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSDISV 194
Score = 32.6 bits (75), Expect = 0.045
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L VL + L + +L+ D I ++D
Sbjct: 22 ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG 63
Score = 32.2 bits (74), Expect = 0.058
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE-LDGNHIHTVDPAAFSGL 70
L + L L P A++ + N+++ + G + PA S
Sbjct: 372 ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA---LIAPATISDG 420
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 43.0 bits (101), Expect = 2e-05
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 17 ATSGGLHNLDSLVLAHNQLRTIPPRV-FAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
A + L L L+HN LR LNSL L + V + L
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS 277
Score = 33.7 bits (77), Expect = 0.015
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 7/57 (12%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI-------HTVDPAAFSGLE 71
L L +A P L++L+L N + P F L+
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204
Score = 32.9 bits (75), Expect = 0.029
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIP---PRVFAHLPLLNSLELDGNHIHTVDPAAF 67
L L L + + T + A L L+L N + A
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248
Score = 29.9 bits (67), Expect = 0.33
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 62
L+SL L+ L+ +P + A L +L+ L N +
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPAKLSVLD---LSYNRLDRN 289
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
NL L L+HNQ+ + P L L L ++ N + ++ + L
Sbjct: 62 FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLS 109
Score = 40.4 bits (95), Expect = 8e-05
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L NL+ L + +N+L++I L L L+L GN I
Sbjct: 126 HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG 167
Score = 36.9 bits (86), Expect = 0.001
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L L L +N+LR HL L L + N + ++
Sbjct: 105 SACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVM 145
Score = 36.9 bits (86), Expect = 0.002
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L + + ++ ++++ L L L N I + P
Sbjct: 40 LSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP 80
Score = 35.8 bits (83), Expect = 0.003
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59
G L L+ L L N++ L +N ++L G
Sbjct: 147 GFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKC 184
Score = 35.8 bits (83), Expect = 0.004
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
GL N L + + L + + D ++I ++
Sbjct: 17 GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG 58
Score = 33.8 bits (78), Expect = 0.013
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLN--SLELDGNHIHTVDP 64
L L+ L + N+L+ + +P L LD N + D
Sbjct: 83 DLTKLEELSVNRNRLKNLNG-----IPSACLSRLFLDNNELRDTDS 123
Score = 28.5 bits (64), Expect = 0.85
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE-LDGNHI 59
L ++ + L + P + L + N+++ DG I
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 42.0 bits (99), Expect = 2e-05
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L L SL L HN + I HLP L SL L N I +
Sbjct: 110 DLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV 151
Score = 42.0 bits (99), Expect = 3e-05
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L LD+L L NQ+ I P A L L +L L NHI +
Sbjct: 154 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA 195
Score = 41.2 bits (97), Expect = 5e-05
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L NL L L N+++ + L L SL L+ N I ++
Sbjct: 88 NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING 129
Score = 40.8 bits (96), Expect = 7e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L N+ L L N+L I P A+L L L LD N + +
Sbjct: 66 YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS 107
Score = 40.0 bits (94), Expect = 1e-04
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L L+SL L +N++ I + L L++L L+ N I + P
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 173
Score = 39.3 bits (92), Expect = 2e-04
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLV 76
GL L +L L+ N + + A L L+ LEL S L V
Sbjct: 176 GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229
Score = 36.6 bits (85), Expect = 0.002
Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 14 EKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
T L+++D ++ ++ ++++ +LP + L L+GN + + P
Sbjct: 37 TDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP 85
Score = 32.3 bits (74), Expect = 0.044
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
GL NLD L L + P ++L + N+++ + T + + G + P +
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP-----N 252
Query: 81 LMWYKEWSTS 90
+ W+ T+
Sbjct: 253 VKWHLPEFTN 262
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 42.0 bits (99), Expect = 3e-05
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
GL NL L L NQ+ I P A L L L + + + P
Sbjct: 126 AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP 168
Score = 41.6 bits (98), Expect = 3e-05
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L L +L N++ I P A LP L + L N I V P
Sbjct: 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Score = 41.6 bits (98), Expect = 4e-05
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
GL NL L + + Q+ + P A+L L +L+ D N I + P
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP 190
Score = 41.6 bits (98), Expect = 4e-05
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L + L L+ N L+ + A L + +L+L I V P +GL
Sbjct: 82 KNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGL 128
Score = 41.2 bits (97), Expect = 5e-05
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L+NL L L NQ+ + P +L + LEL GN + V +GL
Sbjct: 60 QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGL 106
Score = 40.4 bits (95), Expect = 8e-05
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
GL ++ +L L Q+ + P A L L L LD N I + P
Sbjct: 104 AGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP 146
Score = 36.6 bits (85), Expect = 0.002
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L + +L + TI +L L LEL N I + P
Sbjct: 38 ADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP 80
Score = 30.4 bits (69), Expect = 0.24
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC 79
NL + L + + P +L + N ++ G + PA S DN +
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK--GPSGAPIAPATIS---DNGTYASP 268
Query: 80 DLMW 83
+L W
Sbjct: 269 NLTW 272
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 41.6 bits (98), Expect = 3e-05
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L L L NQL +P VF L L L + N + + P L
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERL 134
Score = 41.6 bits (98), Expect = 4e-05
Identities = 19/50 (38%), Positives = 23/50 (46%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL L L NQL +P VF L L L+L N + + A F L
Sbjct: 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111
Score = 37.0 bits (86), Expect = 0.001
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 26 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L L NQ+ + P VF L L L L N + + F L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87
Score = 34.7 bits (80), Expect = 0.007
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 26/84 (30%)
Query: 8 QLSSI---FEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
+L+ + E+ L +L L L NQL++IP F L L H +
Sbjct: 123 KLTELPRGIER------LTHLTHLALDQNQLKSIPHGAFDRLSSL-------THAY---- 165
Query: 65 AAFSGLEDNPLVCTC-DLMWYKEW 87
L NP C C D+M+ + W
Sbjct: 166 -----LFGNPWDCECRDIMYLRNW 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 42.1 bits (98), Expect = 3e-05
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 17/88 (19%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAA 66
+L ++ +A L L+ L + N L + A+LP L L L N +
Sbjct: 474 RLRALPPALAA---LRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQP 528
Query: 67 FSG--------LEDNPLVCTCDLMWYKE 86
L+ N L C +E
Sbjct: 529 LVSCPRLVLLNLQGNSL---CQEEGIQE 553
Score = 40.1 bits (93), Expect = 1e-04
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 14 EKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
+ L + L L+HN+LR +PP A L L L+ N + VD
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG 503
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 40.9 bits (97), Expect = 4e-05
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L L + +L + V LP + + + + AF L
Sbjct: 116 GELPEKSKLQEIYQELTQLKAAV-GELPDQSKQQQIYQELTDL-KTAFERL 164
Score = 40.5 bits (96), Expect = 5e-05
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
G L L + +L + V LP + L+ + + AA L
Sbjct: 93 GELPEKSKLQEIYQELTELKAAV-GELPEKSKLQEIYQELTQL-KAAVGELP 142
Score = 40.1 bits (95), Expect = 6e-05
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
G L L + +L + LP + L+ + + AA L
Sbjct: 47 GELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRL-KAAVGELP 96
Score = 39.8 bits (94), Expect = 9e-05
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L L + +L + V LP + L+ + + AA L
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAV-GELPEKSKLQEIYQELTRL-KAAVGEL 49
Score = 37.8 bits (89), Expect = 5e-04
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L L + +L + V LP + L+ + + AA L
Sbjct: 70 GELPEKSKLQEIYQELTRLKAAVG-ELPEKSKLQEIYQELTEL-KAAVGEL 118
Score = 29.7 bits (68), Expect = 0.27
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP 40
+L+ + V G L + + +L +
Sbjct: 130 ELTQLKAAV---GELPDQSKQQQIYQELTDLKT 159
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 39.6 bits (93), Expect = 9e-05
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI---HTVDP-AAFSGLE-----D 72
L L +L++ +N++ I + LP L L L N + +DP A+ L
Sbjct: 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122
Query: 73 NPLVCTCDLMWYKEW 87
NP+ + Y+ +
Sbjct: 123 NPV---TNKKHYRLY 134
Score = 37.7 bits (88), Expect = 5e-04
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L D++ + N++R + F L L +L ++ N I + L
Sbjct: 41 LDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALP 88
Score = 29.2 bits (66), Expect = 0.44
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDL 81
L L ++ I + A L ++++ N I +D G + T +
Sbjct: 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD-----GFPLLRRLKTLLV 71
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 40.3 bits (94), Expect = 1e-04
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
++ L L L ++P + + LE+ N + ++ P + LE
Sbjct: 58 INQFSELQLNRLNLSSLPDNLPPQ---ITVLEITQNALISL-PELPASLE 103
Score = 37.6 bits (87), Expect = 9e-04
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 17/114 (14%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPL---LNSLELDGNHIHTVDPAAFSGL-------- 70
+L++L ++ N L ++P + N I + P L
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIIL 237
Query: 71 EDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLP 124
EDNPL + + T+ D R + G N R + +
Sbjct: 238 EDNPL--SSRIRESLSQQTAQ---PDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286
Score = 35.7 bits (82), Expect = 0.004
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-----DNPL 75
+L L + +NQL +P LL + D N + + P + LE +N L
Sbjct: 119 PASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTML-PELPTSLEVLSVRNNQL 172
Score = 35.3 bits (81), Expect = 0.007
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
+L+ L N+L T+P L L++D N + + P + LE
Sbjct: 99 PASLEYLDACDNRLSTLPE----LPASLKHLDVDNNQLTML-PELPALLE 143
Score = 33.8 bits (77), Expect = 0.022
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+L+ L + +NQL +P L +L++ N + ++ PA
Sbjct: 159 PTSLEVLSVRNNQLTFLPE----LPESLEALDVSTNLLESL-PAVPVRN 202
Score = 32.3 bits (73), Expect = 0.066
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L+ + +NQL +P L L + N + + P LE
Sbjct: 141 LLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFL-PELPESLE 183
Score = 29.6 bits (66), Expect = 0.50
Identities = 4/65 (6%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 8 QLSSIF-EKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 66
+S + + + N+ ++ + + L+L+ ++ ++
Sbjct: 21 TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDNL 78
Query: 67 FSGLE 71
+
Sbjct: 79 PPQIT 83
Score = 27.6 bits (61), Expect = 2.1
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59
+L S +N + F+ L G +
Sbjct: 10 NFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENR 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L + + +L+S+V +N L +P +LP L ++ D N + T+
Sbjct: 206 SLKKLPD------LPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPD 254
Score = 37.7 bits (88), Expect = 0.001
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
L + + +L+ + +NQL +P +LP L ++ D N + + P
Sbjct: 164 SLKKLPD------LPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKL-PDLP 214
Query: 68 SGLE 71
LE
Sbjct: 215 LSLE 218
Score = 37.3 bits (87), Expect = 0.001
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED 72
L L ++ +N L+T+P P L +L + N++ + P L
Sbjct: 234 QNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL-PELPQSLTF 281
Score = 35.7 bits (83), Expect = 0.004
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L+ L +++NQL +P + L +++D N + + P LE
Sbjct: 130 PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL-PDLPPSLE 176
Score = 35.0 bits (81), Expect = 0.007
Identities = 4/39 (10%), Positives = 12/39 (30%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
+++ L + ++ L + +H H
Sbjct: 415 PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 34.2 bits (79), Expect = 0.015
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
NL L + N LR P + L ++ + A +
Sbjct: 395 PQNLKQLHVETNPLREFPDI----PESVEDLRMNSERVVDPYEFAHETTD 440
Score = 33.8 bits (78), Expect = 0.020
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
++ S+ + +L+ L +++N+L +P P L L NH+ V P
Sbjct: 308 EIRSLCDL------PPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEV-PELP 356
Query: 68 SGLE 71
L+
Sbjct: 357 QNLK 360
Score = 33.8 bits (78), Expect = 0.020
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 62
L L ++ +N L+ +P L S+ N + +
Sbjct: 192 QNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEEL 230
Score = 33.8 bits (78), Expect = 0.021
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L + + +N L+ +P P L + N + +
Sbjct: 150 QNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE 190
Score = 31.5 bits (72), Expect = 0.11
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
NL L + N++R++ P L L + N + + PA LE
Sbjct: 298 NLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIEL-PALPPRLE 340
Score = 30.7 bits (70), Expect = 0.17
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L + L ++P P L SL N + + P L+
Sbjct: 72 QAHELELNNLGLSSLPEL----PPHLESLVASCNSLTEL-PELPQSLK 114
Score = 29.6 bits (67), Expect = 0.45
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59
+L+SLV + N L +P + L L + +
Sbjct: 92 HLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKAL 126
Score = 26.9 bits (60), Expect = 3.4
Identities = 4/55 (7%), Positives = 12/55 (21%), Gaps = 1/55 (1%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPL 75
L + + L +P ++ + P + +
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Score = 26.1 bits (58), Expect = 6.6
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFA--HLPLLNSLE 53
NL L + +N LR P + L + + L
Sbjct: 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 39.3 bits (92), Expect = 2e-04
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L+ L N + + L L+ N + +D + L
Sbjct: 188 SQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEIDVTPLTQLT 236
Score = 39.3 bits (92), Expect = 3e-04
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
NL L N+L + L L L D N + +D + L
Sbjct: 82 SQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQNPLLT 130
Score = 38.9 bits (91), Expect = 3e-04
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L L+ N + T+ + L L D N + +D + L
Sbjct: 61 EKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLDVTPLTKLT 109
Score = 38.5 bits (90), Expect = 4e-04
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L L N+L + + PLL L N + +D + + L
Sbjct: 103 TPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLT 151
Score = 38.1 bits (89), Expect = 7e-04
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L L L + +L + +H L SL HI
Sbjct: 315 SQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS 356
Score = 37.4 bits (87), Expect = 0.001
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68
L SL + ++ +P LN+ T+ +
Sbjct: 336 SHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLT 382
Score = 37.4 bits (87), Expect = 0.001
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L + N L + + L L +L + +D + L
Sbjct: 230 TPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278
Score = 34.3 bits (79), Expect = 0.015
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L SL ++ + + L L L N+I T+D + + L
Sbjct: 41 LATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLDLSQNTNLT 88
Score = 30.4 bits (69), Expect = 0.28
Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 9/103 (8%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPL-----LNSLELDGNHIHTV 62
+ ++ G + L++ A Q T+P + L + L+ GN ++
Sbjct: 350 HIQDF----SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405
Query: 63 DPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTV 105
+ + +L T E+ + T
Sbjct: 406 PGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTT 448
Score = 30.0 bits (68), Expect = 0.35
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 8/54 (14%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
L+ + L L +L L I H L + +G
Sbjct: 244 PLTEL-----DVSTLSKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRKIK 289
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 3e-04
Identities = 27/167 (16%), Positives = 44/167 (26%), Gaps = 48/167 (28%)
Query: 23 HNLDSLVLAHNQLRT---IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-DNPLVCT 78
++ L L+H L +P F +L + P G D+
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIA-----SQLQEQFNKIL-PEPTEGFAADDEPTTP 57
Query: 79 CDLMWYKEWSTSLG----EKEDEQMSRKRTVCT----------LGSSNVHQREIKL-SDL 123
+L LG E ++ + V L +++H KL +
Sbjct: 58 AEL-----VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 124 PKQLVCEGE----------KGGRRSPNSAPSASLSGSFIALLVAAAD 160
LV E R + S AL A +
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNS--------ALFRAVGE 151
Score = 31.9 bits (72), Expect = 0.11
Identities = 31/178 (17%), Positives = 50/178 (28%), Gaps = 70/178 (39%)
Query: 4 IWGGQ---------LSSIFEKVATSGGLHNLDSLV-LAHNQLRTI------PPRVFAH-L 46
I+GGQ L +++ T L + L+ + L + +VF L
Sbjct: 159 IFGGQGNTDDYFEELRDLYQ---TYHVL--VGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 47 PLLNSLELDGNHIHTVD---PAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKR 103
+L LE + ++ D S PL+ L Y
Sbjct: 214 NILEWLE-NPSNTPDKDYLLSIPISC----PLIGVIQLAHY------------------V 250
Query: 104 TVC-TLGSSNVHQREIKLSDLPKQLVCEGEKGGRRSPNSAPSASLSGSFIALLVAAAD 160
LG + P +L RS + G A+ +A D
Sbjct: 251 VTAKLLGFT------------PGEL---------RSYLKGATGHSQGLVTAVAIAETD 287
Score = 29.6 bits (66), Expect = 0.56
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 12/50 (24%)
Query: 6 GGQLSSIFEKVATSGGLHNLDSL--VLAHNQLRTIPPRVFAHLPLLNSLE 53
Q +G L LD++ VL +L+ I L SLE
Sbjct: 1850 NQQ-------YVAAGDLRALDTVTNVLNFIKLQKID---IIELQKSLSLE 1889
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 37.8 bits (88), Expect = 4e-04
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI---HTVDP-AAFSGLE-----D 72
L L L L+ N++ + LP L L L GN + T++P L+ +
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129
Query: 73 NPLVCTCDLMWYKEW 87
+ +L Y+E
Sbjct: 130 CEV---TNLNDYRES 141
Score = 36.6 bits (85), Expect = 0.001
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
NL+ L L + L ++ LP L LEL N I L
Sbjct: 48 FVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLP 95
Score = 26.6 bits (59), Expect = 3.4
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 21 GLHNLDSLVLAHNQLRTIP---PRVFAHLPLLNSL 52
L L SL L + ++ + VF LP L L
Sbjct: 118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 37.7 bits (88), Expect = 4e-04
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH---TVDP-AAFSGLE-----D 72
L+ L L L+ N++ + P L L L GN I T++P L+ +
Sbjct: 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
Query: 73 NPLVCTCDLMWYKEW 87
+ +L Y+E
Sbjct: 123 CEV---TNLNDYREN 134
Score = 37.0 bits (86), Expect = 8e-04
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 10 SSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69
S+ + + L+ L + L +I L L LEL N +
Sbjct: 29 SNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELSDNRVSGGLEVLAEK 86
Query: 70 LE 71
Sbjct: 87 CP 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 38.0 bits (88), Expect = 8e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPL 75
L SL + NQL +P HL ++ L+GN + A + P
Sbjct: 260 PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREITSAPG 312
Score = 36.8 bits (85), Expect = 0.002
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
++ +LV+ N L ++P P L +LE+ GN + ++ P GL
Sbjct: 62 HITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSL-PVLPPGLL 104
Score = 35.6 bits (82), Expect = 0.004
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L ++ NQL ++P L L N + ++ P SGL+
Sbjct: 140 PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL-PMLPSGLQ 184
Score = 34.5 bits (79), Expect = 0.013
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L +NQL ++P L L + N + ++ P S L
Sbjct: 158 ALPSELCKLWAYNNQLTSLPM----LPSGLQELSVSDNQLASL-PTLPSELY 204
Score = 34.5 bits (79), Expect = 0.013
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L+++ N+L ++P L L + GN + ++ P SGL
Sbjct: 220 PSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSL-PMLPSGLL 264
Score = 34.1 bits (78), Expect = 0.014
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
L L + NQL ++P P L L + N + ++ PA S L
Sbjct: 120 PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PALPSELC 164
Score = 33.3 bits (76), Expect = 0.026
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-----DNPL 75
L L ++ NQL ++P L L N + ++ PA SGL+ N L
Sbjct: 180 PSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL-PALPSGLKELIVSGNRL 233
Score = 32.9 bits (75), Expect = 0.042
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59
L +L ++ NQL ++P + L L+ H+
Sbjct: 82 ELRTLEVSGNQLTSLPV-LPPGLLELSIFSNPLTHL 116
Score = 32.6 bits (74), Expect = 0.054
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
QL+S+ L L +N+L ++P A L L + GN + ++ P
Sbjct: 192 QLASLPT------LPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSL-PVLP 240
Query: 68 SGLE 71
S L+
Sbjct: 241 SELK 244
Score = 32.6 bits (74), Expect = 0.055
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
GL L L +P L L + GN + ++ P GL+
Sbjct: 101 PGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTSL-PVLPPGLQ 144
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 37.2 bits (87), Expect = 0.002
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 60
G L+SL L+ N +P + L L+L N
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Score = 36.0 bits (84), Expect = 0.004
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 19 SGGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L +L L LA N+ IP + L L+L GNH + P F
Sbjct: 265 PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Score = 33.0 bits (76), Expect = 0.039
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 11 SIFEKVATSGGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 60
+ S G L L ++ N++ + + L L++ N+
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFS 213
Score = 32.6 bits (75), Expect = 0.047
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 10/67 (14%)
Query: 7 GQLSSIFEKVATSGGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH-TVDP 64
+ + G L L ++ N+L + L L + N + P
Sbjct: 214 TGIPFL-------GDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPP 265
Query: 65 AAFSGLE 71
L+
Sbjct: 266 LPLKSLQ 272
Score = 32.2 bits (74), Expect = 0.066
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G L L ++ N L L L L+L N I + +
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174
Score = 31.4 bits (72), Expect = 0.13
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 60
+ L L L+ N+ +P + L +L+L N+
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Score = 31.0 bits (71), Expect = 0.17
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 60
L SL L+ N L TIP L L L+L N +
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLE 455
Score = 31.0 bits (71), Expect = 0.17
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHI 59
G L L L L N L IP ++ L +L LD N +
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDL 478
Score = 30.6 bits (70), Expect = 0.22
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 19 SGGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 60
SG L L L+ N +PP F LL SL L N+
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFS 331
Score = 30.3 bits (69), Expect = 0.29
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
G + L L L HN + +IP L LN L+L N + P A S L
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Score = 29.5 bits (67), Expect = 0.49
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRV-FAHLPLLNSLELDGNHIHTVDP 64
+L SL L+ N L + L L + N +
Sbjct: 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Score = 29.5 bits (67), Expect = 0.50
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLEL----------DGNHIHTVDPAAFS 68
G L L+ L L+ N+L IP + L +L ++L + T PA F
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
Query: 69 GLEDNPLVC 77
NP +C
Sbjct: 736 N---NPGLC 741
Score = 28.3 bits (64), Expect = 1.2
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHI 59
G L NL L L++N IP L L+L+ N
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLF 550
Score = 28.3 bits (64), Expect = 1.4
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 60
NL+ + L++N+L IP L L L+L N
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFS 527
Score = 28.0 bits (63), Expect = 1.6
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 19 SGGLHNLDSLVLAHNQLR-TIPP--RVFAHLPLLNSLELDGNHIH 60
L++L+ L L+ N + + L L + GN I
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191
Score = 28.0 bits (63), Expect = 2.0
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 60
L L+SL L+++ + ++ F L SL+L N +
Sbjct: 74 LSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLS 113
Score = 27.6 bits (62), Expect = 2.2
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
++ L +++N L IP +P L L L N I P L
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Score = 26.4 bits (59), Expect = 5.1
Identities = 4/40 (10%), Positives = 11/40 (27%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59
L + + F + + L++ N +
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 35.7 bits (83), Expect = 0.004
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L +L + + L +P L +L L N + + PA+ + L
Sbjct: 101 FRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRAL-PASIASL 149
Score = 34.9 bits (81), Expect = 0.007
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
GL NL SL L +R++P A+L L SL++ + + + A L
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSAL-GPAIHHLP 229
Score = 31.5 bits (72), Expect = 0.099
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+L L L P + F L L + +D + + P
Sbjct: 80 QPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLMEL-PDTMQQF 126
Score = 29.5 bits (67), Expect = 0.42
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 57
L++L LA N LR +P A L L L +
Sbjct: 124 QQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRAC 160
Score = 29.5 bits (67), Expect = 0.47
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 57
L NL SL + ++ L + P HLP L L+L G
Sbjct: 203 ANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGC 239
Score = 28.8 bits (65), Expect = 0.78
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 20 GGLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLEL-DGNHIHTVDPAAFSGLE 71
L L+ L L LR PP +F L L L D +++ T+ P L
Sbjct: 226 HHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTL-PLDIHRLT 277
Score = 28.8 bits (65), Expect = 0.81
Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 2/65 (3%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRV-FAHLPLLNSLELDGNHIHTVDPAA 66
+ + +N L+ + A P +LEL + P
Sbjct: 41 ADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF-PDQ 99
Query: 67 FSGLE 71
L
Sbjct: 100 AFRLS 104
Score = 27.2 bits (61), Expect = 2.9
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 20 GGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L L+ L L L +P + A LP + + + +D
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQAQLDQ 318
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 34.7 bits (80), Expect = 0.007
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDL 81
L+ L +++NQ+ ++ L L L + N I + L + L
Sbjct: 92 ADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKIT--NWGEIDKLAALDKLEDLLL 147
Query: 82 M 82
Sbjct: 148 A 148
Score = 33.1 bits (76), Expect = 0.022
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 14 EKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
EK+++ G+ NL L L N ++ I + A L L + N I ++
Sbjct: 61 EKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLSG 110
Score = 31.2 bits (71), Expect = 0.088
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 7/53 (13%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNP 74
L L L+ N + I + + L L L N I + L+
Sbjct: 47 LKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKI-----ENLDAVA 92
Score = 28.5 bits (64), Expect = 0.77
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 21 GLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHI 59
L NL L +++N++ A L L L L GN +
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 34.0 bits (79), Expect = 0.014
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHI 59
L NL + N++ IP + L S+ + N +
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Score = 34.0 bits (79), Expect = 0.015
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHI 59
+ L +L ++N L T+PP + LP L + DGN I
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRI 161
Score = 32.5 bits (75), Expect = 0.042
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 7 GQLSSIFEKVATSGGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 60
L + G NL+ L L +N++ T+P L L+SL + N++
Sbjct: 235 FDLGKV-------GLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLC 281
Score = 30.2 bits (69), Expect = 0.26
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 20 GGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHI 59
L L L + H + IP + + L +L+ N +
Sbjct: 98 AKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNAL 137
Score = 28.7 bits (65), Expect = 0.78
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 24 NLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 60
NL + L+ N L F + L N +
Sbjct: 198 NLAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLA 234
Score = 28.7 bits (65), Expect = 0.85
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 20 GGLHNLDSLVLAH-NQLR-TIPPRVFAHLPLLNSLELDGNHI 59
L L+ L + N L IPP A L L+ L + ++
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNV 113
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.021
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 26/54 (48%)
Query: 97 EQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCEGEKGGRRSPNSAPSASLSGS 150
E+ + K+ L +S +KL + +SAP+ ++ +
Sbjct: 18 EKQALKK----LQAS------LKLY----------------ADDSAPALAIKAT 45
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 31.1 bits (70), Expect = 0.13
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 24 NLDSLVLAHNQLRTIPP--RVFAHLPLLNSLELDGNHIHTVDP-AAFSG-------LEDN 73
L SL L++N+L + + P L L L GN + + G L+ N
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230
Query: 74 PLVCTC 79
L T
Sbjct: 231 SLCDTF 236
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.46
Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 35/159 (22%)
Query: 8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE-LDG-NHIHTVDPA 65
+L + TS H ++ L + ++ R+ P N L L + +
Sbjct: 204 KLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-- 260
Query: 66 AFSGLEDNP---LVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQ-----RE 117
AF + L+ T K+ + L +S TL V +
Sbjct: 261 AF----NLSCKILLTTRF----KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 118 IKLSDLPKQLVCEGEKGGRRSPNSAPSASLSGSFIALLV 156
+ DLP++ V +P S IA +
Sbjct: 313 CRPQDLPRE-VLTT------NP-------RRLSIIAESI 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,450,340
Number of extensions: 131795
Number of successful extensions: 1168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 561
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)