RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10386
(166 letters)
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 52.0 bits (123), Expect = 3e-09
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 32 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS-------GLEDNPLVCTCDLMWY 84
+N L +P + L L++L L N ++T+ F L NP +C C+++++
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYF 216
Query: 85 KEW 87
+ W
Sbjct: 217 RRW 219
Score = 35.5 bits (80), Expect = 0.002
Identities = 10/64 (15%), Positives = 16/64 (25%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMW 83
+ L L+ N L T L L LD + + + + L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91
Query: 84 YKEW 87
Sbjct: 92 LPLL 95
Score = 30.5 bits (67), Expect = 0.074
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 32 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L +PP + L L N ++T A
Sbjct: 19 KRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPY 54
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 43.1 bits (100), Expect = 5e-06
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+ L L +N++ I F +L L++L L N I + P AF+ L
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 78
Score = 39.3 bits (90), Expect = 8e-05
Identities = 8/78 (10%), Positives = 22/78 (28%), Gaps = 8/78 (10%)
Query: 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFA------HLPLLNSLEL 54
+ + + + + + L +N + I F + + L
Sbjct: 220 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279
Query: 55 DGNHIHT--VDPAAFSGL 70
N + + P+ F +
Sbjct: 280 FSNPVQYWEIQPSTFRCV 297
Score = 38.5 bits (88), Expect = 2e-04
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
++E+ L S + G+ L + +A + TIP + P L L LDGN I
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKIT 184
Query: 61 TVDPAAFSGLEDNPLVCTCDLMWYKEW 87
VD A+ GL + +
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVD 211
Score = 37.7 bits (86), Expect = 3e-04
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L NL +L+L +N++ I P FA L L L L N + +
Sbjct: 52 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 96
Score = 29.6 bits (65), Expect = 0.15
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC 79
L L+ L L+ NQL+ +P ++ L L E N I V + F+GL +V
Sbjct: 76 APLVKLERLYLSKNQLKELPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELG 132
Query: 80 DLMWY 84
Sbjct: 133 TNPLK 137
Score = 27.3 bits (59), Expect = 0.83
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
+L + + L +P + LL+ L N I + F L
Sbjct: 11 HLRVVQCSDLGLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNL 54
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 42.1 bits (97), Expect = 1e-05
Identities = 25/101 (24%), Positives = 31/101 (30%), Gaps = 32/101 (31%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG------------- 69
NL L L N++ ++P R F L L+ L L N + V P AF
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 70 -------------------LEDNPLVCTCDLMWYKEWSTSL 91
L DNP VC C W
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF 253
Score = 35.2 bits (79), Expect = 0.002
Identities = 26/114 (22%), Positives = 37/114 (32%), Gaps = 6/114 (5%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG---LEDNPLVCTC 79
L L L N L+ +P F L L L L GN I +V AF G L+ L
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 80 DLMWYKEWSTSLGEKEDEQMSRKRT---VCTLGSSNVHQREIKLSDLPKQLVCE 130
+ LG + + + ++L+D P C
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242
Score = 30.5 bits (67), Expect = 0.074
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 32 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWYKEW 87
L+ +P + + L GN I V A+F + ++ + +
Sbjct: 20 QQGLQAVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Score = 29.4 bits (64), Expect = 0.19
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLL 49
+ L N++ +P F L
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNL 58
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 39.8 bits (91), Expect = 4e-05
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 18/110 (16%)
Query: 32 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDNPLVCTCDLMW 83
N+++ I ++F L L +L L N I V P +F L NP C C L W
Sbjct: 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146
Query: 84 YKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLP-KQLVCEGE 132
+ EW ++ C + R++++ DLP + C E
Sbjct: 147 FAEWLRKK------SLNGGAARC---GAPSKVRDVQIKDLPHSEFKCSSE 187
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 38.4 bits (87), Expect = 2e-04
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 54
G L ++ ++ ++P +L L +
Sbjct: 198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232
Score = 33.3 bits (74), Expect = 0.007
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
+ + +N L +P VF L++ IH++ L+
Sbjct: 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 225
Score = 30.6 bits (67), Expect = 0.061
Identities = 11/64 (17%), Positives = 18/64 (28%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMW 83
N L +LR I F+ L +E+ N + V A +
Sbjct: 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89
Query: 84 YKEW 87
+
Sbjct: 90 NLLY 93
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 38.1 bits (87), Expect = 2e-04
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L L L A+N++ + A+L +N L N I + P
Sbjct: 326 SSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP 368
Score = 37.3 bits (85), Expect = 4e-04
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 13 FEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 57
V++ L N++ L HNQ+ + P A+L + L L+
Sbjct: 341 VSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
Score = 34.2 bits (77), Expect = 0.005
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
L NL L L N + I P + L L L N + D ++ + L
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS--DVSSLANL 350
Score = 32.7 bits (73), Expect = 0.015
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 13 FEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED 72
+ + T L NL L LA+NQ+ + P + L L L+L N I + P A
Sbjct: 231 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 288
Query: 73 NPLVCTCDLMWYKEW 87
N + L
Sbjct: 289 NLELNENQLEDISPI 303
Score = 31.1 bits (69), Expect = 0.059
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLEDNPLVCTCD 80
L + +L +++I +L L + N + + P + L D +
Sbjct: 43 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100
Query: 81 LMWYKEW 87
Sbjct: 101 ADITPLA 107
Score = 30.4 bits (67), Expect = 0.089
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
NLD L L NQL+ I A L L L+L N I + P
Sbjct: 219 TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP 258
Score = 30.4 bits (67), Expect = 0.097
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC 79
L+NL + ++NQL I P +L L + ++ N I + P A +
Sbjct: 63 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120
Query: 80 DLMWYKEW 87
+
Sbjct: 121 QITDIDPL 128
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 34.9 bits (79), Expect = 0.002
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 10 SSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69
+ + E+ A L L ++ I + A L ++++ N I +D G
Sbjct: 5 AELIEQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD-----G 58
Query: 70 LEDNPLVCTCDLMWYKEWS 88
+ T + +
Sbjct: 59 FPLLRRLKTLLVNNNRICR 77
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 35.2 bits (79), Expect = 0.002
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-----DNPLV 76
+L+ L +++N+L +P A P L L NH+ V P L+ NPL
Sbjct: 283 PPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEV-PELPQNLKQLHVEYNPLR 337
Query: 77 CTCDLM 82
D+
Sbjct: 338 EFPDIP 343
Score = 34.4 bits (77), Expect = 0.004
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
+ + +L + L+ L+ + N L +P L L ++ N +
Sbjct: 289 LNVSNNKLIEL------PALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLRE 338
Query: 62 VDPAAFSGLED 72
P +ED
Sbjct: 339 F-PDIPESVED 348
Score = 32.5 bits (72), Expect = 0.021
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 5/65 (7%)
Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMW 83
L L + L ++P P L SL N + + P L+ +
Sbjct: 39 QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKAL 93
Query: 84 YKEWS 88
Sbjct: 94 SDLPP 98
Score = 27.1 bits (58), Expect = 0.98
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDL 81
+L+SLV + N L +P L SL +D N++ + +
Sbjct: 57 PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK 112
Query: 82 MWYKEW 87
+ +
Sbjct: 113 LPELQN 118
Score = 26.7 bits (57), Expect = 1.5
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 55
NL L + +N LR P + L ++
Sbjct: 323 PQNLKQLHVEYNPLREFPD----IPESVEDLRMN 352
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 33.8 bits (76), Expect = 0.005
Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 16 VATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPL 75
T L+++D ++ ++ ++++ +LP + L L+GN + D + L++
Sbjct: 39 AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT--DIKPLANLKNLGW 94
Query: 76 VCTCDLMWYKEW 87
+ +
Sbjct: 95 LFLDENKVKDLS 106
Score = 33.8 bits (76), Expect = 0.006
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 54
GL L +L L+ N + + A L L+ LEL
Sbjct: 175 AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL 207
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 32.8 bits (73), Expect = 0.008
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG-------LED 72
GL L +L + + LR + P F P L+ L L N + ++ G L
Sbjct: 53 RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112
Query: 73 NPLVCTCDLMWYKEW 87
NPL C+C L W + W
Sbjct: 113 NPLHCSCALRWLQRW 127
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 33.5 bits (75), Expect = 0.008
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L +L N++ I P A LP L + L N I V P
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Score = 33.1 bits (74), Expect = 0.008
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 54
L NL + L +NQ+ + P A+ L + L
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
Score = 31.5 bits (70), Expect = 0.031
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 2/72 (2%)
Query: 16 VATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPL 75
T L + +L + TI +L L LEL N I + P
Sbjct: 34 TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELE 91
Query: 76 VCTCDLMWYKEW 87
+ L
Sbjct: 92 LSGNPLKNVSAI 103
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 31.3 bits (69), Expect = 0.042
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 30 LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA-------FSGLEDNPLVC 77
L +N++ P+ L L+SL + N++ P S +N +C
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 31.2 bits (69), Expect = 0.042
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSL 52
L L+ L ++ N++ I A L L SL
Sbjct: 169 ANLTTLERLDISSNKVSDISV--LAKLTNLESL 199
Score = 25.4 bits (54), Expect = 3.3
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 32 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
NQ+ + P A+L L L++ N + +
Sbjct: 159 SNQVTDLKP--LANLTTLERLDISSNKVSDISV 189
Score = 23.9 bits (50), Expect = 9.7
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
L VL + + L + +L+ D I ++D
Sbjct: 16 ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSIDG 57
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 31.4 bits (69), Expect = 0.044
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 6 GGQLSSIFEKVATSGGLHNLDSLVLAHNQL-----RTIPPRVFAHLPLLNSLELDGNHI 59
+ ++ + L +L L +N++ RT+ + +P L LEL+GN
Sbjct: 256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 30.5 bits (68), Expect = 0.046
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 28 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWY 84
L LAH L + L L+ L+L N + + P A + L ++ D
Sbjct: 3 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE 56
Score = 30.1 bits (67), Expect = 0.064
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 27 SLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVD 63
L+L +N+L+ + P L L L GN + +
Sbjct: 69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
Score = 28.1 bits (62), Expect = 0.29
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 20 GGLHNLDSLVLAHNQLRTIP---PRVFAHLPLLNSL 52
L L L N L R+ LP ++S+
Sbjct: 87 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 29.9 bits (65), Expect = 0.15
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 24 NLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAF-SGLEDNPLVCTCDL 81
++ SL + +L + L + LD + S L NP + +L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Score = 28.4 bits (61), Expect = 0.41
Identities = 8/44 (18%), Positives = 10/44 (22%), Gaps = 4/44 (9%)
Query: 20 GGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHI 59
L + L L P L L L N +
Sbjct: 24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67
Score = 25.3 bits (53), Expect = 4.5
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 4/41 (9%)
Query: 23 HNLDSLVLAHNQLRTIPPRVFA----HLPLLNSLELDGNHI 59
L L LA + A L L+L N +
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 26.3 bits (57), Expect = 1.5
Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 7/110 (6%)
Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
+ L + + ++P L SL L N ++ +D + ++ P + +
Sbjct: 40 AQNIDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILN 97
Query: 81 LMWYKEWSTSLGEKEDEQMSRKRT-----VCTLGSSNVHQREIKLSDLPK 125
L + S +K + + PK
Sbjct: 98 LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPK 147
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 24.2 bits (52), Expect = 8.7
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 42 VFAHLPLLNSLELDGNHIHTVD 63
V A L + + + G+ I
Sbjct: 145 VGAGLAAVTAAGVLGDVIKIAQ 166
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 589,765
Number of extensions: 24739
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 54
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.4 bits)