Query psy1039
Match_columns 206
No_of_seqs 184 out of 2065
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 16:37:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626|consensus 99.9 2.2E-22 4.7E-27 165.8 11.3 167 1-179 244-411 (966)
2 KOG1126|consensus 99.9 1.6E-21 3.4E-26 161.5 12.0 174 2-193 414-588 (638)
3 KOG0548|consensus 99.8 1.1E-19 2.4E-24 147.6 15.1 178 4-193 353-532 (539)
4 PRK15359 type III secretion sy 99.8 2.2E-19 4.9E-24 127.6 14.9 121 2-129 20-140 (144)
5 KOG4626|consensus 99.8 2.6E-20 5.5E-25 153.8 10.6 167 2-180 279-446 (966)
6 KOG0553|consensus 99.8 8.4E-20 1.8E-24 139.4 12.5 123 6-132 78-200 (304)
7 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-18 2.8E-23 150.7 20.7 174 2-179 358-565 (615)
8 TIGR00990 3a0801s09 mitochondr 99.8 1.1E-18 2.4E-23 151.1 19.2 163 5-179 327-490 (615)
9 KOG1155|consensus 99.8 1.3E-17 2.7E-22 133.8 17.9 173 1-177 356-528 (559)
10 PRK12370 invasion protein regu 99.8 6.8E-18 1.5E-22 144.3 17.0 168 1-180 287-465 (553)
11 TIGR02552 LcrH_SycD type III s 99.8 3.5E-17 7.5E-22 114.9 15.2 122 1-126 9-130 (135)
12 KOG0624|consensus 99.8 4.7E-17 1E-21 126.6 16.9 192 4-205 33-232 (504)
13 PRK11189 lipoprotein NlpI; Pro 99.8 1.2E-16 2.7E-21 126.6 19.4 106 7-116 62-167 (296)
14 KOG1155|consensus 99.8 7.1E-17 1.5E-21 129.5 16.0 164 9-184 330-494 (559)
15 PRK12370 invasion protein regu 99.7 8.9E-17 1.9E-21 137.5 17.5 159 1-171 330-490 (553)
16 TIGR02521 type_IV_pilW type IV 99.7 5.7E-16 1.2E-20 117.0 19.9 161 7-179 29-192 (234)
17 PRK15363 pathogenicity island 99.7 2.3E-16 5E-21 111.3 15.7 110 3-116 28-138 (157)
18 TIGR02521 type_IV_pilW type IV 99.7 4E-16 8.8E-21 117.8 17.4 166 2-179 58-226 (234)
19 PRK10370 formate-dependent nit 99.7 1.1E-16 2.4E-21 119.5 13.9 116 2-121 66-184 (198)
20 KOG1126|consensus 99.7 7.9E-17 1.7E-21 133.9 13.8 151 1-163 481-632 (638)
21 KOG0547|consensus 99.7 2.3E-16 5E-21 127.3 15.8 171 2-184 387-565 (606)
22 COG3063 PilF Tfp pilus assembl 99.7 7.7E-16 1.7E-20 113.8 16.6 161 8-180 34-197 (250)
23 KOG0543|consensus 99.7 5.6E-16 1.2E-20 123.0 16.8 129 7-136 206-346 (397)
24 PRK09782 bacteriophage N4 rece 99.7 5E-16 1.1E-20 139.1 18.0 149 18-179 585-734 (987)
25 TIGR03302 OM_YfiO outer membra 99.7 1.2E-15 2.5E-20 117.1 17.5 174 4-179 28-226 (235)
26 PLN03088 SGT1, suppressor of 99.7 4.9E-16 1.1E-20 126.0 16.0 116 11-130 4-119 (356)
27 KOG0547|consensus 99.7 5.4E-16 1.2E-20 125.2 15.1 160 8-179 325-485 (606)
28 PRK15174 Vi polysaccharide exp 99.7 1.1E-15 2.4E-20 133.0 17.6 158 11-180 214-376 (656)
29 PRK11447 cellulose synthase su 99.7 9.2E-16 2E-20 141.1 17.5 177 1-179 295-518 (1157)
30 PRK15359 type III secretion sy 99.7 1.3E-15 2.8E-20 108.2 13.8 126 29-169 13-139 (144)
31 PRK15174 Vi polysaccharide exp 99.7 2.6E-15 5.6E-20 130.7 17.9 168 4-179 105-307 (656)
32 TIGR02917 PEP_TPR_lipo putativ 99.7 3.8E-15 8.3E-20 132.5 19.1 170 4-193 698-868 (899)
33 PRK09782 bacteriophage N4 rece 99.7 3.1E-15 6.7E-20 134.1 18.3 158 9-179 542-700 (987)
34 COG3063 PilF Tfp pilus assembl 99.7 3.6E-15 7.8E-20 110.3 14.8 163 1-175 61-226 (250)
35 TIGR02917 PEP_TPR_lipo putativ 99.7 6.5E-15 1.4E-19 131.0 17.7 163 3-179 731-894 (899)
36 KOG4234|consensus 99.6 8.3E-15 1.8E-19 106.3 14.0 129 7-136 93-223 (271)
37 PRK11788 tetratricopeptide rep 99.6 2.1E-14 4.5E-19 117.7 18.4 169 2-179 62-237 (389)
38 PRK11447 cellulose synthase su 99.6 9.9E-15 2.2E-19 134.3 17.4 166 2-179 488-694 (1157)
39 PRK15179 Vi polysaccharide bio 99.6 2.1E-14 4.5E-19 124.6 17.0 136 4-151 81-216 (694)
40 PRK11788 tetratricopeptide rep 99.6 3.9E-14 8.5E-19 116.1 17.9 167 4-180 136-306 (389)
41 PLN02789 farnesyltranstransfer 99.6 2.5E-14 5.5E-19 114.0 16.1 163 1-168 63-229 (320)
42 KOG0548|consensus 99.6 1.2E-14 2.5E-19 118.7 14.2 176 10-194 3-181 (539)
43 PF13429 TPR_15: Tetratricopep 99.6 8.7E-15 1.9E-19 115.2 12.8 163 7-179 108-271 (280)
44 TIGR02795 tol_pal_ybgF tol-pal 99.6 4.6E-14 1E-18 96.4 13.4 112 9-121 2-116 (119)
45 KOG1125|consensus 99.6 1.8E-14 3.9E-19 118.5 12.9 169 1-181 311-523 (579)
46 PRK10370 formate-dependent nit 99.6 6.8E-14 1.5E-18 104.5 14.6 118 22-151 52-172 (198)
47 PRK02603 photosystem I assembl 99.6 1.3E-13 2.9E-18 100.9 14.9 111 3-114 29-153 (172)
48 COG5010 TadD Flp pilus assembl 99.6 1.6E-13 3.4E-18 103.4 15.1 164 3-179 61-225 (257)
49 PRK11189 lipoprotein NlpI; Pro 99.6 1.5E-13 3.2E-18 109.1 15.7 148 22-179 39-188 (296)
50 TIGR02552 LcrH_SycD type III s 99.6 1.8E-13 4E-18 95.9 13.3 116 30-157 4-120 (135)
51 PF13429 TPR_15: Tetratricopep 99.5 4E-14 8.6E-19 111.4 10.5 179 6-201 41-251 (280)
52 KOG1173|consensus 99.5 3.8E-13 8.3E-18 110.5 16.3 168 2-181 305-514 (611)
53 KOG0550|consensus 99.5 2.1E-13 4.5E-18 108.5 14.1 129 5-135 245-374 (486)
54 KOG2002|consensus 99.5 1.3E-13 2.9E-18 119.0 13.1 171 2-179 157-436 (1018)
55 TIGR03302 OM_YfiO outer membra 99.5 5E-13 1.1E-17 102.5 14.6 133 3-136 61-224 (235)
56 KOG2002|consensus 99.5 6.8E-13 1.5E-17 114.7 16.7 176 6-193 304-483 (1018)
57 PRK10049 pgaA outer membrane p 99.5 1E-12 2.2E-17 116.5 18.4 119 4-127 44-162 (765)
58 KOG4648|consensus 99.5 6E-14 1.3E-18 109.5 9.3 114 9-126 97-210 (536)
59 KOG2003|consensus 99.5 2E-13 4.4E-18 110.1 12.4 175 1-179 482-683 (840)
60 PRK15331 chaperone protein Sic 99.5 5.7E-13 1.2E-17 94.6 13.2 118 3-125 31-148 (165)
61 KOG1125|consensus 99.5 5.1E-14 1.1E-18 115.8 8.4 103 7-113 428-530 (579)
62 COG4235 Cytochrome c biogenesi 99.5 7.9E-13 1.7E-17 101.9 14.0 121 2-126 149-272 (287)
63 PF13414 TPR_11: TPR repeat; P 99.5 1.4E-13 2.9E-18 85.4 8.2 67 8-78 2-69 (69)
64 cd00189 TPR Tetratricopeptide 99.5 9.1E-13 2E-17 85.0 12.0 99 11-113 2-100 (100)
65 PRK10049 pgaA outer membrane p 99.5 2.9E-12 6.3E-17 113.7 18.3 163 5-180 11-174 (765)
66 PLN02789 farnesyltranstransfer 99.5 4.9E-12 1.1E-16 100.9 17.8 155 3-169 31-189 (320)
67 COG5010 TadD Flp pilus assembl 99.5 2.2E-12 4.7E-17 97.3 14.6 128 4-135 95-222 (257)
68 PF13414 TPR_11: TPR repeat; P 99.5 1.9E-13 4E-18 84.7 7.0 67 46-112 2-69 (69)
69 KOG0550|consensus 99.5 9.1E-13 2E-17 104.9 12.3 159 2-169 196-367 (486)
70 CHL00033 ycf3 photosystem I as 99.5 4.5E-12 9.8E-17 92.4 14.6 108 7-115 33-154 (168)
71 KOG0624|consensus 99.5 2.1E-11 4.5E-16 95.5 18.8 178 2-180 99-365 (504)
72 KOG2076|consensus 99.5 1.3E-11 2.8E-16 106.2 18.7 107 2-112 166-272 (895)
73 KOG2076|consensus 99.4 1.5E-11 3.2E-16 105.9 18.2 160 8-179 138-303 (895)
74 PF12895 Apc3: Anaphase-promot 99.4 6.6E-13 1.4E-17 85.6 7.9 84 21-107 1-84 (84)
75 PRK15363 pathogenicity island 99.4 4.4E-12 9.6E-17 89.7 12.4 98 46-151 34-131 (157)
76 PRK14574 hmsH outer membrane p 99.4 2E-11 4.4E-16 107.9 19.2 164 3-179 28-192 (822)
77 KOG1173|consensus 99.4 1.5E-12 3.2E-17 107.1 11.1 126 1-126 406-534 (611)
78 PRK10803 tol-pal system protei 99.4 1.1E-11 2.4E-16 96.3 15.2 115 8-123 141-259 (263)
79 PRK10866 outer membrane biogen 99.4 1.5E-10 3.2E-15 89.2 21.2 170 7-177 30-233 (243)
80 PRK15179 Vi polysaccharide bio 99.4 1.2E-11 2.6E-16 107.5 16.8 130 41-181 83-213 (694)
81 KOG0553|consensus 99.4 2.9E-12 6.3E-17 98.4 11.5 120 46-173 80-200 (304)
82 PF13432 TPR_16: Tetratricopep 99.4 1.9E-12 4.1E-17 79.2 7.4 62 53-114 3-64 (65)
83 PF13525 YfiO: Outer membrane 99.4 1E-10 2.2E-15 87.9 17.9 166 7-173 3-195 (203)
84 COG4783 Putative Zn-dependent 99.4 6.9E-11 1.5E-15 96.1 16.9 126 6-135 303-428 (484)
85 PRK14574 hmsH outer membrane p 99.4 4E-11 8.6E-16 106.1 16.9 170 2-184 61-231 (822)
86 KOG1840|consensus 99.4 6.4E-11 1.4E-15 99.0 17.1 171 4-179 194-390 (508)
87 PF13432 TPR_16: Tetratricopep 99.4 7.7E-12 1.7E-16 76.5 8.5 65 13-81 1-65 (65)
88 KOG3060|consensus 99.4 2.9E-10 6.2E-15 85.6 18.4 147 6-161 83-230 (289)
89 PF13512 TPR_18: Tetratricopep 99.4 5E-11 1.1E-15 83.0 13.3 113 7-120 8-138 (142)
90 cd05804 StaR_like StaR_like; a 99.3 6.9E-11 1.5E-15 95.8 16.1 161 7-180 41-210 (355)
91 KOG0551|consensus 99.3 1.2E-10 2.7E-15 90.6 15.6 108 7-114 79-186 (390)
92 KOG1129|consensus 99.3 1.6E-12 3.4E-17 101.1 5.2 138 2-151 317-457 (478)
93 CHL00033 ycf3 photosystem I as 99.3 2.3E-10 5.1E-15 83.3 15.1 148 19-172 9-167 (168)
94 PLN03088 SGT1, suppressor of 99.3 8.3E-11 1.8E-15 95.6 13.7 112 50-169 5-117 (356)
95 KOG1156|consensus 99.3 2.2E-10 4.7E-15 95.9 15.3 174 2-184 34-213 (700)
96 KOG1840|consensus 99.3 5.3E-10 1.1E-14 93.6 17.6 174 4-179 278-473 (508)
97 KOG4162|consensus 99.3 6E-11 1.3E-15 100.8 11.7 123 10-136 651-775 (799)
98 COG1729 Uncharacterized protei 99.3 2.2E-10 4.8E-15 87.5 13.7 114 9-123 141-257 (262)
99 KOG1156|consensus 99.3 1.9E-10 4.1E-15 96.2 14.2 162 7-179 5-166 (700)
100 KOG0545|consensus 99.3 3.2E-10 7E-15 85.1 14.0 110 8-117 177-300 (329)
101 TIGR00540 hemY_coli hemY prote 99.3 5.1E-10 1.1E-14 92.7 16.8 170 2-179 180-393 (409)
102 PF12688 TPR_5: Tetratrico pep 99.2 4.6E-10 1E-14 76.8 13.3 99 10-109 2-103 (120)
103 cd05804 StaR_like StaR_like; a 99.2 5E-10 1.1E-14 90.8 15.1 166 4-179 1-171 (355)
104 KOG4162|consensus 99.2 4.1E-10 8.9E-15 95.8 14.3 110 4-117 679-790 (799)
105 cd00189 TPR Tetratricopeptide 99.2 6.4E-10 1.4E-14 71.4 12.5 95 49-151 2-96 (100)
106 PRK02603 photosystem I assembl 99.2 7.5E-10 1.6E-14 81.0 14.1 108 44-151 32-148 (172)
107 PF14559 TPR_19: Tetratricopep 99.2 6.8E-11 1.5E-15 72.9 7.0 66 58-123 2-67 (68)
108 KOG1128|consensus 99.2 5.9E-10 1.3E-14 94.5 14.6 126 46-179 484-610 (777)
109 COG2956 Predicted N-acetylgluc 99.2 1.7E-09 3.6E-14 84.2 16.0 110 2-113 62-173 (389)
110 TIGR02795 tol_pal_ybgF tol-pal 99.2 6.7E-10 1.4E-14 75.6 12.5 103 47-157 2-111 (119)
111 PF09976 TPR_21: Tetratricopep 99.2 2.5E-09 5.5E-14 76.0 15.8 132 8-149 10-144 (145)
112 COG2956 Predicted N-acetylgluc 99.2 3.7E-09 8.1E-14 82.3 17.6 175 9-192 141-322 (389)
113 PRK14720 transcript cleavage f 99.2 1.7E-09 3.6E-14 95.7 17.6 131 3-140 25-174 (906)
114 PF09976 TPR_21: Tetratricopep 99.2 8.7E-10 1.9E-14 78.4 13.0 99 8-108 47-145 (145)
115 KOG0376|consensus 99.2 4.7E-11 1E-15 97.0 7.1 118 9-130 4-121 (476)
116 KOG1129|consensus 99.2 2.1E-10 4.4E-15 89.5 10.0 157 10-178 257-417 (478)
117 PRK10747 putative protoheme IX 99.2 9.9E-09 2.1E-13 84.8 20.6 155 20-179 129-286 (398)
118 TIGR00540 hemY_coli hemY prote 99.2 4.8E-09 1E-13 87.0 18.8 166 6-179 115-286 (409)
119 PRK11906 transcriptional regul 99.2 2.9E-09 6.3E-14 87.0 17.0 162 11-184 257-435 (458)
120 KOG4642|consensus 99.2 7.5E-11 1.6E-15 88.0 7.1 114 8-125 9-127 (284)
121 PF13371 TPR_9: Tetratricopept 99.2 1.9E-10 4.2E-15 71.8 8.1 65 55-119 3-67 (73)
122 PRK10747 putative protoheme IX 99.2 1.6E-09 3.5E-14 89.5 15.2 119 50-179 266-384 (398)
123 KOG1174|consensus 99.2 1E-09 2.2E-14 87.9 12.7 167 2-180 327-495 (564)
124 COG4783 Putative Zn-dependent 99.1 1.4E-09 3.1E-14 88.6 13.5 122 2-127 333-454 (484)
125 PF13371 TPR_9: Tetratricopept 99.1 4.2E-10 9.2E-15 70.3 8.2 70 16-89 2-71 (73)
126 KOG3060|consensus 99.1 3.3E-08 7.2E-13 74.7 19.4 156 5-172 48-204 (289)
127 PF14559 TPR_19: Tetratricopep 99.1 3E-10 6.5E-15 69.9 6.3 67 19-89 1-67 (68)
128 KOG0495|consensus 99.1 4.7E-09 1E-13 88.4 15.1 159 2-173 611-770 (913)
129 PRK15331 chaperone protein Sic 99.1 3.8E-09 8.3E-14 75.2 12.5 109 46-162 36-144 (165)
130 KOG1128|consensus 99.1 6.2E-10 1.3E-14 94.3 9.5 125 8-136 484-608 (777)
131 PRK14720 transcript cleavage f 99.1 3.1E-09 6.6E-14 94.0 14.2 174 2-180 58-281 (906)
132 KOG1174|consensus 99.1 3.8E-09 8.2E-14 84.7 13.1 157 5-173 228-385 (564)
133 PF12569 NARP1: NMDA receptor- 99.1 1.9E-08 4.2E-13 85.0 18.2 84 50-133 197-280 (517)
134 PF13424 TPR_12: Tetratricopep 99.1 8.8E-10 1.9E-14 69.8 7.9 72 5-76 1-75 (78)
135 PF12569 NARP1: NMDA receptor- 99.1 3.4E-08 7.3E-13 83.5 19.3 57 83-139 196-252 (517)
136 COG4235 Cytochrome c biogenesi 99.1 1.4E-08 3.1E-13 78.5 15.0 120 25-156 138-261 (287)
137 PRK10153 DNA-binding transcrip 99.0 1.6E-08 3.5E-13 85.8 16.4 136 8-156 338-487 (517)
138 KOG1127|consensus 99.0 1E-08 2.2E-13 89.7 14.7 134 2-136 485-651 (1238)
139 KOG4555|consensus 99.0 3.6E-08 7.8E-13 67.4 14.2 101 9-113 43-147 (175)
140 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 6E-09 1.3E-13 85.1 12.5 71 3-77 69-142 (453)
141 COG4105 ComL DNA uptake lipopr 99.0 2E-07 4.4E-12 70.9 19.1 167 8-175 33-223 (254)
142 PRK11906 transcriptional regul 99.0 7.2E-09 1.6E-13 84.8 12.1 111 3-117 289-408 (458)
143 PRK10153 DNA-binding transcrip 99.0 4.8E-09 1E-13 88.9 11.5 111 1-116 368-488 (517)
144 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 2.7E-09 5.9E-14 87.1 9.2 66 45-110 73-141 (453)
145 KOG0495|consensus 99.0 4.1E-08 8.9E-13 82.9 16.0 144 8-163 650-794 (913)
146 KOG2003|consensus 99.0 7.8E-08 1.7E-12 78.3 16.1 116 4-123 519-634 (840)
147 KOG0543|consensus 98.9 2.7E-08 5.9E-13 79.7 13.0 119 47-173 208-342 (397)
148 COG4785 NlpI Lipoprotein NlpI, 98.9 4.2E-08 9.1E-13 72.7 12.5 111 6-120 62-172 (297)
149 PF13525 YfiO: Outer membrane 98.9 1.5E-07 3.1E-12 70.8 15.3 127 5-132 38-195 (203)
150 PF13424 TPR_12: Tetratricopep 98.9 5E-09 1.1E-13 66.3 6.2 66 45-110 3-75 (78)
151 PF12895 Apc3: Anaphase-promot 98.9 4.3E-09 9.4E-14 67.6 5.8 76 60-136 2-79 (84)
152 PF06552 TOM20_plant: Plant sp 98.9 3.4E-08 7.5E-13 71.1 10.6 97 25-125 7-124 (186)
153 KOG1127|consensus 98.9 1.5E-08 3.3E-13 88.7 10.3 118 10-131 563-680 (1238)
154 PRK10803 tol-pal system protei 98.9 6.2E-08 1.3E-12 75.4 12.7 103 47-157 142-252 (263)
155 COG4700 Uncharacterized protei 98.8 5.9E-07 1.3E-11 65.2 15.4 151 16-179 63-216 (251)
156 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 7.1E-08 1.5E-12 78.9 11.5 109 21-136 181-289 (395)
157 PRK10866 outer membrane biogen 98.8 8.6E-07 1.9E-11 68.4 16.6 126 7-133 67-230 (243)
158 COG1729 Uncharacterized protei 98.8 1.8E-07 4E-12 71.6 12.6 108 50-162 144-255 (262)
159 KOG2376|consensus 98.8 3E-07 6.6E-12 76.8 14.7 161 3-182 40-201 (652)
160 KOG1308|consensus 98.8 1.1E-08 2.4E-13 80.2 5.5 102 8-113 113-214 (377)
161 PLN03081 pentatricopeptide (PP 98.7 1.2E-06 2.6E-11 77.5 15.6 120 7-133 288-409 (697)
162 COG4785 NlpI Lipoprotein NlpI, 98.7 1.5E-07 3.3E-12 69.8 8.2 78 1-82 91-168 (297)
163 PLN03218 maturation of RBCL 1; 98.7 5E-06 1.1E-10 76.1 19.6 56 53-108 585-641 (1060)
164 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 1E-06 2.2E-11 72.2 13.8 100 7-110 198-297 (395)
165 PLN03218 maturation of RBCL 1; 98.7 5.4E-06 1.2E-10 75.9 19.7 159 8-179 506-672 (1060)
166 KOG4648|consensus 98.6 1.6E-07 3.4E-12 74.1 8.1 108 50-165 100-208 (536)
167 PF12688 TPR_5: Tetratrico pep 98.6 7E-07 1.5E-11 61.1 10.1 88 48-135 2-95 (120)
168 KOG4234|consensus 98.6 8.6E-07 1.9E-11 65.1 10.9 112 47-166 95-212 (271)
169 PF04733 Coatomer_E: Coatomer 98.6 1.5E-06 3.3E-11 68.7 13.3 119 7-131 129-251 (290)
170 PF04733 Coatomer_E: Coatomer 98.6 5E-07 1.1E-11 71.4 10.5 157 7-180 100-259 (290)
171 COG4700 Uncharacterized protei 98.6 1E-05 2.2E-10 58.9 14.9 118 9-130 89-208 (251)
172 PF13428 TPR_14: Tetratricopep 98.5 2.2E-07 4.8E-12 52.0 5.0 41 49-89 3-43 (44)
173 PF14938 SNAP: Soluble NSF att 98.5 9.6E-07 2.1E-11 69.7 10.1 159 8-175 34-215 (282)
174 PF13431 TPR_17: Tetratricopep 98.5 1.3E-07 2.9E-12 49.7 3.5 32 70-101 2-33 (34)
175 PF13428 TPR_14: Tetratricopep 98.5 3.1E-07 6.7E-12 51.4 4.9 43 81-123 1-43 (44)
176 PLN03077 Protein ECB2; Provisi 98.5 5.6E-06 1.2E-10 74.9 15.5 160 6-179 551-714 (857)
177 PLN03081 pentatricopeptide (PP 98.5 4.7E-06 1E-10 73.8 14.5 158 8-179 390-551 (697)
178 COG0457 NrfG FOG: TPR repeat [ 98.5 3.7E-05 8E-10 56.5 17.0 163 5-179 91-259 (291)
179 PF00515 TPR_1: Tetratricopept 98.4 4E-07 8.6E-12 47.8 4.1 31 49-79 3-33 (34)
180 KOG1130|consensus 98.4 1.9E-06 4.2E-11 69.6 9.3 164 9-173 195-372 (639)
181 PF13512 TPR_18: Tetratricopep 98.4 1.7E-05 3.8E-10 55.4 12.9 76 46-121 9-87 (142)
182 KOG3785|consensus 98.4 1.1E-05 2.3E-10 64.3 13.1 105 18-129 31-135 (557)
183 PF06552 TOM20_plant: Plant sp 98.4 8.4E-06 1.8E-10 58.9 11.5 100 63-162 7-120 (186)
184 PF14938 SNAP: Soluble NSF att 98.4 7.9E-06 1.7E-10 64.5 12.5 111 7-117 112-232 (282)
185 KOG1130|consensus 98.4 2.1E-06 4.5E-11 69.4 8.8 171 8-179 134-338 (639)
186 COG3071 HemY Uncharacterized e 98.4 0.00014 3E-09 58.6 18.9 122 9-134 84-206 (400)
187 PF00515 TPR_1: Tetratricopept 98.4 7.2E-07 1.6E-11 46.8 4.1 34 81-114 1-34 (34)
188 KOG4340|consensus 98.3 1.7E-05 3.7E-10 61.8 12.4 153 19-179 20-201 (459)
189 PF07719 TPR_2: Tetratricopept 98.3 1.6E-06 3.4E-11 45.4 4.8 29 50-78 4-32 (34)
190 PF07719 TPR_2: Tetratricopept 98.3 1.6E-06 3.5E-11 45.3 4.8 34 81-114 1-34 (34)
191 KOG3785|consensus 98.3 2.4E-05 5.2E-10 62.4 13.0 163 11-184 59-250 (557)
192 PF03704 BTAD: Bacterial trans 98.3 5.6E-05 1.2E-09 53.5 14.0 99 11-109 8-124 (146)
193 COG0457 NrfG FOG: TPR repeat [ 98.3 0.00023 4.9E-09 52.3 17.8 159 9-179 59-225 (291)
194 KOG4642|consensus 98.3 3.8E-06 8.2E-11 63.2 7.7 90 47-136 10-99 (284)
195 PLN03077 Protein ECB2; Provisi 98.3 8.1E-05 1.7E-09 67.5 17.7 157 8-180 454-649 (857)
196 KOG1915|consensus 98.3 0.00014 2.9E-09 60.2 16.8 162 5-179 69-230 (677)
197 KOG4555|consensus 98.3 3.7E-05 8E-10 52.8 11.3 88 47-134 43-134 (175)
198 KOG2053|consensus 98.2 0.0002 4.4E-09 62.9 17.4 139 18-168 18-156 (932)
199 KOG1310|consensus 98.2 9.4E-06 2E-10 67.5 8.6 112 5-120 370-484 (758)
200 COG3071 HemY Uncharacterized e 98.1 0.0011 2.4E-08 53.5 18.6 169 7-180 116-287 (400)
201 KOG2796|consensus 98.1 8.4E-05 1.8E-09 57.1 11.2 111 5-115 208-320 (366)
202 KOG4340|consensus 98.1 0.00011 2.3E-09 57.5 11.9 129 4-136 39-199 (459)
203 KOG2053|consensus 98.1 0.00018 3.9E-09 63.2 14.4 173 2-179 36-213 (932)
204 PF13431 TPR_17: Tetratricopep 98.1 3.3E-06 7.1E-11 44.3 2.5 33 31-67 1-33 (34)
205 KOG2376|consensus 98.1 0.00028 6E-09 59.6 14.9 126 10-151 13-138 (652)
206 PRK10941 hypothetical protein; 98.0 3.1E-05 6.7E-10 60.4 8.5 82 44-125 178-259 (269)
207 PF05843 Suf: Suppressor of fo 98.0 0.00022 4.8E-09 56.2 13.5 119 11-133 3-125 (280)
208 COG2976 Uncharacterized protei 98.0 0.00046 1E-08 50.7 13.1 100 10-113 90-191 (207)
209 PF14853 Fis1_TPR_C: Fis1 C-te 98.0 7.2E-05 1.6E-09 43.3 7.0 47 82-128 2-48 (53)
210 PF13181 TPR_8: Tetratricopept 98.0 1.6E-05 3.5E-10 41.5 4.0 29 50-78 4-32 (34)
211 COG3118 Thioredoxin domain-con 97.9 0.00018 3.9E-09 56.0 10.9 126 48-180 135-260 (304)
212 PF10300 DUF3808: Protein of u 97.9 0.00015 3.2E-09 61.3 11.4 107 3-110 261-376 (468)
213 PRK04841 transcriptional regul 97.9 0.001 2.2E-08 60.6 17.3 162 9-179 452-635 (903)
214 PF13181 TPR_8: Tetratricopept 97.9 2.2E-05 4.8E-10 40.9 3.9 33 82-114 2-34 (34)
215 KOG3081|consensus 97.9 0.0016 3.6E-08 50.1 14.7 121 8-129 107-255 (299)
216 KOG0551|consensus 97.8 0.00046 1E-08 54.6 11.5 91 45-135 79-173 (390)
217 KOG1915|consensus 97.8 0.0035 7.7E-08 52.1 16.5 97 9-110 404-500 (677)
218 KOG3824|consensus 97.8 0.00087 1.9E-08 52.7 12.4 86 41-126 110-195 (472)
219 PF10300 DUF3808: Protein of u 97.8 0.0025 5.5E-08 53.9 16.3 106 22-131 246-356 (468)
220 KOG0376|consensus 97.8 6.5E-05 1.4E-09 61.9 6.4 110 49-166 6-116 (476)
221 KOG4507|consensus 97.8 6.5E-05 1.4E-09 63.4 6.4 108 15-125 613-720 (886)
222 KOG3081|consensus 97.8 0.0015 3.4E-08 50.2 13.1 104 10-117 170-278 (299)
223 KOG1070|consensus 97.7 0.0017 3.6E-08 60.0 15.1 129 11-151 1532-1662(1710)
224 PF13174 TPR_6: Tetratricopept 97.7 6.2E-05 1.3E-09 38.8 3.9 31 83-113 2-32 (33)
225 COG4105 ComL DNA uptake lipopr 97.7 0.006 1.3E-07 46.8 15.9 128 5-133 67-222 (254)
226 PRK04841 transcriptional regul 97.7 0.0035 7.5E-08 57.3 17.5 169 9-179 409-596 (903)
227 PF12968 DUF3856: Domain of Un 97.7 0.0049 1.1E-07 41.7 13.1 96 14-109 14-128 (144)
228 KOG2610|consensus 97.7 0.0026 5.6E-08 50.7 13.7 156 12-179 106-270 (491)
229 KOG2796|consensus 97.7 0.0027 5.9E-08 49.0 13.0 125 9-136 177-307 (366)
230 COG3118 Thioredoxin domain-con 97.7 0.0056 1.2E-07 47.9 15.0 161 8-178 133-294 (304)
231 PF04184 ST7: ST7 protein; In 97.6 0.00078 1.7E-08 56.1 10.6 121 1-124 194-339 (539)
232 PF14561 TPR_20: Tetratricopep 97.6 0.002 4.3E-08 41.8 10.2 66 66-131 7-74 (90)
233 PF10602 RPN7: 26S proteasome 97.6 0.0026 5.7E-08 46.6 12.0 102 9-111 36-143 (177)
234 PF03704 BTAD: Bacterial trans 97.6 0.01 2.2E-07 41.9 14.6 101 50-151 9-131 (146)
235 PF04184 ST7: ST7 protein; In 97.6 0.0026 5.6E-08 53.1 12.7 139 14-166 173-340 (539)
236 KOG2471|consensus 97.6 0.00033 7.2E-09 58.1 7.6 127 5-131 236-385 (696)
237 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00052 1.1E-08 39.7 6.3 41 48-88 2-42 (53)
238 PRK13184 pknD serine/threonine 97.6 0.0015 3.1E-08 59.3 12.0 114 15-130 481-601 (932)
239 KOG2047|consensus 97.5 0.0051 1.1E-07 52.9 14.2 176 2-181 342-536 (835)
240 PF13174 TPR_6: Tetratricopept 97.5 0.00019 4.1E-09 36.9 3.9 31 49-79 2-32 (33)
241 PF04781 DUF627: Protein of un 97.5 0.0024 5.2E-08 42.6 9.9 95 15-110 2-107 (111)
242 PF05843 Suf: Suppressor of fo 97.5 0.0071 1.5E-07 47.7 14.2 123 49-179 3-130 (280)
243 KOG0545|consensus 97.5 0.0034 7.4E-08 47.9 11.5 98 46-151 177-292 (329)
244 KOG2610|consensus 97.5 0.0014 3.1E-08 52.1 9.8 105 2-107 130-235 (491)
245 KOG1941|consensus 97.5 0.0011 2.3E-08 53.3 9.2 126 10-135 123-266 (518)
246 KOG0546|consensus 97.5 0.00038 8.2E-09 55.4 6.6 125 10-134 223-362 (372)
247 PRK10941 hypothetical protein; 97.5 0.0016 3.5E-08 50.9 10.0 75 11-89 183-257 (269)
248 KOG4507|consensus 97.4 0.002 4.3E-08 54.8 10.6 108 11-120 214-322 (886)
249 PF09613 HrpB1_HrpK: Bacterial 97.4 0.022 4.7E-07 40.8 14.6 112 8-125 9-120 (160)
250 KOG1586|consensus 97.4 0.0065 1.4E-07 46.1 12.2 106 9-115 73-188 (288)
251 PF15015 NYD-SP12_N: Spermatog 97.4 0.0054 1.2E-07 50.3 12.6 98 11-109 178-290 (569)
252 KOG1585|consensus 97.4 0.0084 1.8E-07 45.8 12.8 133 46-184 30-178 (308)
253 KOG1941|consensus 97.4 0.0083 1.8E-07 48.4 13.3 101 10-111 163-276 (518)
254 PF13176 TPR_7: Tetratricopept 97.4 0.00038 8.3E-09 36.8 4.0 26 12-37 2-27 (36)
255 PF13176 TPR_7: Tetratricopept 97.4 0.00037 7.9E-09 36.9 3.7 25 84-108 2-26 (36)
256 KOG1585|consensus 97.4 0.04 8.7E-07 42.2 15.8 127 9-136 31-171 (308)
257 KOG3364|consensus 97.4 0.011 2.3E-07 41.0 11.5 84 46-129 31-119 (149)
258 smart00028 TPR Tetratricopepti 97.3 0.00043 9.4E-09 34.5 3.8 29 50-78 4-32 (34)
259 KOG2396|consensus 97.3 0.0091 2E-07 49.9 12.9 95 28-126 90-185 (568)
260 smart00028 TPR Tetratricopepti 97.3 0.00051 1.1E-08 34.2 3.9 33 82-114 2-34 (34)
261 KOG1070|consensus 97.3 0.021 4.6E-07 53.2 16.1 162 3-172 1452-1650(1710)
262 KOG1308|consensus 97.3 0.00019 4.1E-09 56.9 2.6 84 53-136 120-203 (377)
263 COG4976 Predicted methyltransf 97.2 0.00068 1.5E-08 51.1 4.8 58 19-80 5-62 (287)
264 PF13281 DUF4071: Domain of un 97.2 0.042 9.2E-07 44.9 15.5 167 9-179 141-328 (374)
265 COG3898 Uncharacterized membra 97.2 0.1 2.2E-06 42.7 18.3 162 9-179 120-286 (531)
266 KOG3824|consensus 97.1 0.0022 4.8E-08 50.5 7.4 76 11-90 118-193 (472)
267 PF02259 FAT: FAT domain; Int 97.1 0.097 2.1E-06 42.2 16.8 127 5-132 142-309 (352)
268 COG2912 Uncharacterized conser 97.1 0.0096 2.1E-07 46.2 10.0 81 45-125 179-259 (269)
269 KOG4814|consensus 97.0 0.014 3.1E-07 50.2 11.5 100 10-110 355-457 (872)
270 KOG2471|consensus 97.0 0.0008 1.7E-08 55.9 4.1 86 8-93 282-381 (696)
271 KOG2047|consensus 97.0 0.2 4.4E-06 43.5 19.3 67 9-75 387-453 (835)
272 PF09986 DUF2225: Uncharacteri 96.9 0.046 1E-06 41.4 12.2 96 19-114 87-198 (214)
273 KOG3617|consensus 96.8 0.051 1.1E-06 48.5 13.5 179 10-202 859-1084(1416)
274 COG4976 Predicted methyltransf 96.8 0.0027 5.8E-08 48.0 5.1 60 56-115 4-63 (287)
275 PF14561 TPR_20: Tetratricopep 96.8 0.031 6.7E-07 36.2 9.3 49 28-80 7-55 (90)
276 PF10579 Rapsyn_N: Rapsyn N-te 96.8 0.03 6.5E-07 35.0 8.7 66 8-74 5-70 (80)
277 KOG4151|consensus 96.7 0.013 2.8E-07 51.4 9.3 121 8-129 52-175 (748)
278 PF09613 HrpB1_HrpK: Bacterial 96.7 0.12 2.6E-06 37.0 13.5 88 47-134 10-97 (160)
279 COG5191 Uncharacterized conser 96.7 0.0052 1.1E-07 48.5 6.1 81 46-126 106-187 (435)
280 KOG1550|consensus 96.6 0.069 1.5E-06 46.4 13.1 165 7-180 242-421 (552)
281 KOG3364|consensus 96.6 0.045 9.7E-07 38.0 9.4 74 9-85 32-109 (149)
282 COG2976 Uncharacterized protei 96.6 0.19 4.2E-06 37.2 15.1 97 47-152 89-188 (207)
283 COG0790 FOG: TPR repeat, SEL1 96.6 0.12 2.7E-06 40.7 13.4 109 6-122 106-230 (292)
284 PF02259 FAT: FAT domain; Int 96.5 0.082 1.8E-06 42.6 12.4 106 8-113 183-341 (352)
285 PF13374 TPR_10: Tetratricopep 96.4 0.0099 2.1E-07 31.9 4.4 29 48-76 3-31 (42)
286 KOG3617|consensus 96.4 0.32 7E-06 43.7 15.2 168 8-193 911-1117(1416)
287 PF13281 DUF4071: Domain of un 96.3 0.48 1E-05 38.9 16.4 132 45-176 139-279 (374)
288 TIGR02561 HrpB1_HrpK type III 96.3 0.12 2.6E-06 36.6 10.3 77 16-96 17-93 (153)
289 PF04910 Tcf25: Transcriptiona 96.3 0.39 8.4E-06 39.4 14.9 130 2-131 33-194 (360)
290 KOG1586|consensus 96.3 0.34 7.4E-06 37.1 15.9 106 7-113 32-146 (288)
291 PF13374 TPR_10: Tetratricopep 96.3 0.012 2.7E-07 31.5 4.4 31 9-39 2-32 (42)
292 PF08631 SPO22: Meiosis protei 96.3 0.41 8.9E-06 37.7 15.2 29 10-38 36-65 (278)
293 COG3914 Spy Predicted O-linked 96.3 0.14 3E-06 43.9 12.2 106 15-124 73-185 (620)
294 PF07079 DUF1347: Protein of u 96.2 0.3 6.4E-06 40.8 13.3 97 9-107 379-521 (549)
295 PF09986 DUF2225: Uncharacteri 96.2 0.14 3E-06 38.8 10.9 84 7-90 116-209 (214)
296 COG3898 Uncharacterized membra 96.1 0.19 4.2E-06 41.2 12.0 136 2-155 256-395 (531)
297 KOG0530|consensus 96.1 0.083 1.8E-06 41.0 9.2 94 21-118 55-150 (318)
298 PF10373 EST1_DNA_bind: Est1 D 96.0 0.04 8.7E-07 43.0 7.5 62 66-127 1-62 (278)
299 PF12862 Apc5: Anaphase-promot 95.9 0.058 1.3E-06 35.1 6.8 57 19-76 8-70 (94)
300 KOG1550|consensus 95.8 0.2 4.4E-06 43.5 11.7 94 10-111 289-394 (552)
301 COG2912 Uncharacterized conser 95.8 0.089 1.9E-06 40.9 8.4 74 12-89 184-257 (269)
302 KOG1914|consensus 95.7 1.2 2.5E-05 38.3 16.6 143 2-153 13-167 (656)
303 PF08424 NRDE-2: NRDE-2, neces 95.6 0.53 1.1E-05 38.0 12.8 105 2-110 12-131 (321)
304 PF04910 Tcf25: Transcriptiona 95.5 1.2 2.6E-05 36.6 14.9 80 45-124 38-147 (360)
305 COG3629 DnrI DNA-binding trans 95.4 0.59 1.3E-05 36.8 11.8 65 46-110 152-216 (280)
306 KOG2300|consensus 95.4 1.1 2.5E-05 37.8 13.8 124 7-135 365-505 (629)
307 COG5191 Uncharacterized conser 95.4 0.026 5.7E-07 44.7 4.2 78 5-86 103-181 (435)
308 PF08631 SPO22: Meiosis protei 95.3 1.1 2.4E-05 35.3 19.8 26 51-76 39-65 (278)
309 PF12862 Apc5: Anaphase-promot 95.3 0.13 2.8E-06 33.5 6.8 58 56-113 7-73 (94)
310 TIGR02561 HrpB1_HrpK type III 95.3 0.65 1.4E-05 32.9 10.5 86 50-135 13-98 (153)
311 PF07720 TPR_3: Tetratricopept 95.2 0.086 1.9E-06 27.7 4.8 18 52-69 6-23 (36)
312 PF10516 SHNi-TPR: SHNi-TPR; 95.2 0.04 8.7E-07 29.4 3.5 29 82-110 2-30 (38)
313 PRK15180 Vi polysaccharide bio 95.2 0.046 9.9E-07 45.9 5.3 108 3-114 317-424 (831)
314 PF12968 DUF3856: Domain of Un 95.2 0.3 6.4E-06 33.3 8.2 69 8-76 54-129 (144)
315 PF08424 NRDE-2: NRDE-2, neces 95.1 1.1 2.3E-05 36.2 12.9 91 30-124 6-108 (321)
316 KOG2300|consensus 95.0 1.5 3.3E-05 37.2 13.5 115 8-123 6-131 (629)
317 PF07079 DUF1347: Protein of u 95.0 0.38 8.1E-06 40.3 9.9 59 9-72 462-520 (549)
318 KOG2041|consensus 95.0 1.9 4.1E-05 38.3 14.4 82 9-106 796-877 (1189)
319 COG0790 FOG: TPR repeat, SEL1 94.9 1.5 3.2E-05 34.5 13.5 146 10-170 74-236 (292)
320 KOG0686|consensus 94.9 0.34 7.4E-06 39.9 9.3 99 10-109 151-257 (466)
321 PF07720 TPR_3: Tetratricopept 94.8 0.13 2.8E-06 27.1 4.7 34 81-114 1-36 (36)
322 PF11207 DUF2989: Protein of u 94.7 0.13 2.9E-06 38.3 6.2 76 22-101 119-198 (203)
323 KOG4814|consensus 94.6 0.85 1.9E-05 39.8 11.4 86 48-133 355-446 (872)
324 KOG0530|consensus 94.6 1.7 3.7E-05 34.0 15.0 119 2-124 70-190 (318)
325 PF07721 TPR_4: Tetratricopept 94.6 0.068 1.5E-06 25.8 3.1 23 83-105 3-25 (26)
326 KOG2396|consensus 94.6 0.26 5.6E-06 41.6 8.2 76 6-85 102-178 (568)
327 PF10516 SHNi-TPR: SHNi-TPR; 94.5 0.075 1.6E-06 28.4 3.4 30 48-77 2-31 (38)
328 KOG0529|consensus 94.4 0.41 8.9E-06 39.4 8.9 116 2-121 102-235 (421)
329 COG3947 Response regulator con 94.4 0.3 6.6E-06 38.5 7.7 58 50-107 282-339 (361)
330 KOG1839|consensus 94.4 1.3 2.8E-05 41.6 12.8 147 4-151 968-1134(1236)
331 PF10373 EST1_DNA_bind: Est1 D 94.2 0.2 4.4E-06 39.0 6.8 62 28-93 1-62 (278)
332 KOG1258|consensus 93.9 3.9 8.4E-05 35.4 14.3 121 5-129 293-414 (577)
333 KOG0529|consensus 93.8 3.4 7.3E-05 34.3 13.3 132 24-159 90-232 (421)
334 PF07721 TPR_4: Tetratricopept 93.8 0.1 2.2E-06 25.1 2.8 21 12-32 4-24 (26)
335 KOG0985|consensus 93.7 4.2 9.1E-05 37.9 14.3 134 46-184 1219-1382(1666)
336 PF11207 DUF2989: Protein of u 93.6 1.5 3.2E-05 32.8 9.8 77 57-135 116-198 (203)
337 KOG1310|consensus 93.6 0.73 1.6E-05 39.4 9.0 90 46-135 373-465 (758)
338 PF04781 DUF627: Protein of un 93.6 1.5 3.2E-05 29.5 10.0 72 53-124 2-87 (111)
339 KOG1839|consensus 93.5 2.6 5.6E-05 39.7 13.0 168 7-179 930-1122(1236)
340 COG3914 Spy Predicted O-linked 93.5 4.7 0.0001 35.0 15.2 96 27-126 49-147 (620)
341 KOG3807|consensus 93.3 3.7 8E-05 33.4 13.4 115 13-133 188-329 (556)
342 PF10602 RPN7: 26S proteasome 93.2 2.5 5.4E-05 31.0 12.1 65 46-110 35-102 (177)
343 PF15015 NYD-SP12_N: Spermatog 93.1 2.1 4.5E-05 35.8 10.6 84 53-136 182-283 (569)
344 COG4649 Uncharacterized protei 92.8 2.9 6.2E-05 30.7 13.1 87 13-101 62-152 (221)
345 TIGR03504 FimV_Cterm FimV C-te 92.8 0.52 1.1E-05 26.0 4.9 25 85-109 3-27 (44)
346 PF10255 Paf67: RNA polymerase 92.8 0.64 1.4E-05 38.6 7.6 59 50-109 125-192 (404)
347 PRK15180 Vi polysaccharide bio 92.7 1.5 3.3E-05 37.2 9.5 113 17-133 297-409 (831)
348 KOG2041|consensus 92.7 3.5 7.7E-05 36.7 11.9 100 5-107 689-822 (1189)
349 COG2909 MalT ATP-dependent tra 92.4 8.6 0.00019 35.1 17.4 174 9-193 458-649 (894)
350 PF10255 Paf67: RNA polymerase 92.3 5.9 0.00013 33.1 14.8 60 13-74 126-191 (404)
351 COG3629 DnrI DNA-binding trans 92.2 1.2 2.5E-05 35.2 8.0 65 8-76 152-216 (280)
352 PF10345 Cohesin_load: Cohesin 92.1 8.2 0.00018 34.1 18.9 114 7-122 57-182 (608)
353 COG4455 ImpE Protein of avirul 91.9 3 6.4E-05 31.8 9.4 59 18-80 10-68 (273)
354 PF11817 Foie-gras_1: Foie gra 91.8 3.9 8.5E-05 31.6 10.6 82 25-107 154-244 (247)
355 PF11817 Foie-gras_1: Foie gra 91.3 2.1 4.5E-05 33.1 8.6 65 9-74 178-245 (247)
356 PF14863 Alkyl_sulf_dimr: Alky 91.2 2.2 4.7E-05 30.1 7.7 48 84-131 73-120 (141)
357 KOG1258|consensus 90.7 11 0.00023 32.9 16.2 157 8-170 330-489 (577)
358 KOG3616|consensus 90.6 4.8 0.0001 36.3 10.6 96 10-107 662-791 (1636)
359 COG3947 Response regulator con 90.5 1.8 3.8E-05 34.4 7.3 60 10-73 280-339 (361)
360 KOG2422|consensus 90.4 11 0.00024 32.8 17.5 143 22-172 251-432 (665)
361 PF14863 Alkyl_sulf_dimr: Alky 90.2 2.5 5.4E-05 29.8 7.3 53 47-99 70-122 (141)
362 KOG0890|consensus 89.9 9.7 0.00021 38.5 12.9 117 5-127 1666-1801(2382)
363 KOG1914|consensus 89.7 13 0.00028 32.3 12.6 73 33-110 10-82 (656)
364 KOG2422|consensus 89.5 13 0.00028 32.4 12.2 87 2-88 277-384 (665)
365 PF09670 Cas_Cas02710: CRISPR- 89.2 12 0.00025 31.1 12.7 64 10-76 132-198 (379)
366 COG4455 ImpE Protein of avirul 89.1 1.8 3.9E-05 33.0 6.1 73 55-127 9-81 (273)
367 COG5107 RNA14 Pre-mRNA 3'-end 89.0 13 0.00029 31.6 16.5 147 2-153 35-191 (660)
368 smart00386 HAT HAT (Half-A-TPR 88.9 1.3 2.8E-05 21.7 4.0 24 63-86 3-26 (33)
369 PF04053 Coatomer_WDAD: Coatom 88.6 3.2 6.9E-05 35.2 8.1 48 17-73 326-373 (443)
370 PF10345 Cohesin_load: Cohesin 88.5 17 0.00037 32.2 15.7 87 26-113 38-131 (608)
371 smart00386 HAT HAT (Half-A-TPR 88.4 1.6 3.4E-05 21.3 4.1 30 95-124 1-30 (33)
372 PF10579 Rapsyn_N: Rapsyn N-te 87.5 5.2 0.00011 25.1 7.9 60 48-107 7-69 (80)
373 cd02682 MIT_AAA_Arch MIT: doma 87.3 1.8 3.9E-05 26.9 4.5 23 14-36 11-33 (75)
374 KOG3783|consensus 87.2 5.6 0.00012 34.2 8.6 86 4-91 262-348 (546)
375 TIGR03504 FimV_Cterm FimV C-te 86.8 1.7 3.8E-05 23.9 3.8 25 51-75 3-27 (44)
376 PF04212 MIT: MIT (microtubule 86.6 2.2 4.8E-05 25.8 4.7 31 8-38 4-34 (69)
377 PF04053 Coatomer_WDAD: Coatom 86.2 20 0.00043 30.5 14.4 63 58-133 329-391 (443)
378 PHA02537 M terminase endonucle 86.0 2.5 5.4E-05 32.4 5.6 110 19-129 93-225 (230)
379 COG4941 Predicted RNA polymera 86.0 7.7 0.00017 31.5 8.4 95 24-123 311-407 (415)
380 KOG0546|consensus 85.0 0.94 2E-05 36.7 3.0 82 12-97 278-359 (372)
381 KOG0985|consensus 84.9 36 0.00077 32.3 15.9 133 46-184 1103-1248(1666)
382 PF12854 PPR_1: PPR repeat 84.8 3.5 7.6E-05 21.0 4.2 24 47-70 7-30 (34)
383 cd02681 MIT_calpain7_1 MIT: do 84.7 2.8 6.1E-05 26.1 4.4 31 8-38 5-35 (76)
384 PF09205 DUF1955: Domain of un 84.6 12 0.00025 26.4 8.0 60 50-109 88-148 (161)
385 KOG2581|consensus 84.2 24 0.00051 29.6 11.7 107 9-115 169-281 (493)
386 COG4649 Uncharacterized protei 83.3 16 0.00035 27.0 15.0 106 10-117 95-202 (221)
387 PF11846 DUF3366: Domain of un 82.8 6 0.00013 29.2 6.4 50 63-113 127-176 (193)
388 PF12854 PPR_1: PPR repeat 82.6 4.4 9.5E-05 20.7 4.0 22 11-32 9-30 (34)
389 cd02683 MIT_1 MIT: domain cont 82.4 3.6 7.8E-05 25.7 4.3 29 9-37 6-34 (77)
390 PF11846 DUF3366: Domain of un 81.8 7.6 0.00016 28.6 6.7 49 25-78 127-175 (193)
391 KOG3783|consensus 81.3 29 0.00062 30.1 10.3 68 47-114 449-524 (546)
392 PRK11619 lytic murein transgly 81.2 31 0.00068 30.9 11.1 52 58-109 323-374 (644)
393 cd02682 MIT_AAA_Arch MIT: doma 80.9 11 0.00024 23.4 8.7 24 49-72 8-31 (75)
394 PF04190 DUF410: Protein of un 80.7 25 0.00054 27.5 10.1 43 141-184 75-118 (260)
395 cd02680 MIT_calpain7_2 MIT: do 80.1 4 8.8E-05 25.3 3.8 32 8-39 5-36 (75)
396 KOG0276|consensus 79.8 28 0.00061 30.8 9.8 67 31-110 629-695 (794)
397 cd02678 MIT_VPS4 MIT: domain c 79.3 5.7 0.00012 24.5 4.5 30 9-38 6-35 (75)
398 smart00671 SEL1 Sel1-like repe 79.2 5.1 0.00011 20.1 3.7 28 11-38 3-34 (36)
399 KOG0128|consensus 78.7 31 0.00068 31.5 10.1 107 60-171 92-198 (881)
400 PF02064 MAS20: MAS20 protein 78.7 8 0.00017 26.5 5.3 28 14-42 68-95 (121)
401 PF10952 DUF2753: Protein of u 78.3 19 0.00042 24.8 7.2 58 12-70 4-73 (140)
402 KOG0276|consensus 77.8 12 0.00027 32.8 7.2 80 18-106 646-746 (794)
403 PF09670 Cas_Cas02710: CRISPR- 77.7 40 0.00086 28.0 12.7 62 49-110 133-198 (379)
404 KOG4014|consensus 77.6 27 0.00059 26.1 10.0 75 9-91 68-154 (248)
405 KOG3807|consensus 77.4 39 0.00084 27.7 11.0 118 1-120 210-351 (556)
406 PF00244 14-3-3: 14-3-3 protei 76.7 32 0.00069 26.5 8.9 31 11-42 3-33 (236)
407 smart00299 CLH Clathrin heavy 76.7 19 0.0004 24.8 7.0 35 59-93 19-53 (140)
408 PF09205 DUF1955: Domain of un 76.6 24 0.00051 24.9 7.4 61 12-76 88-149 (161)
409 KOG4521|consensus 76.3 15 0.00033 34.7 7.7 31 46-76 919-949 (1480)
410 PF04212 MIT: MIT (microtubule 76.2 9 0.00019 23.0 4.6 23 51-73 9-31 (69)
411 COG5536 BET4 Protein prenyltra 75.9 38 0.00083 26.9 9.6 129 25-157 90-228 (328)
412 PF08238 Sel1: Sel1 repeat; I 75.3 8.7 0.00019 19.6 4.0 14 25-38 24-37 (39)
413 COG5536 BET4 Protein prenyltra 75.1 14 0.00031 29.3 6.3 121 2-126 101-238 (328)
414 PF07219 HemY_N: HemY protein 74.5 22 0.00048 23.6 7.4 50 47-96 59-108 (108)
415 cd02680 MIT_calpain7_2 MIT: do 74.3 7.8 0.00017 24.1 3.9 17 93-109 18-34 (75)
416 cd02656 MIT MIT: domain contai 74.3 9.6 0.00021 23.3 4.5 29 10-38 7-35 (75)
417 smart00745 MIT Microtubule Int 74.0 9.7 0.00021 23.4 4.5 26 12-37 11-36 (77)
418 cd02684 MIT_2 MIT: domain cont 74.0 10 0.00022 23.5 4.5 30 9-38 6-35 (75)
419 TIGR02710 CRISPR-associated pr 73.6 52 0.0011 27.4 12.7 68 4-72 123-196 (380)
420 PRK13184 pknD serine/threonine 73.6 67 0.0014 30.2 11.2 102 9-117 512-627 (932)
421 PF15469 Sec5: Exocyst complex 73.4 33 0.00071 25.0 8.6 72 91-172 96-171 (182)
422 PF06957 COPI_C: Coatomer (COP 71.6 29 0.00064 29.2 7.9 109 7-116 202-335 (422)
423 PF01535 PPR: PPR repeat; Int 71.3 9 0.0002 18.2 3.2 21 15-35 6-26 (31)
424 COG5107 RNA14 Pre-mRNA 3'-end 70.9 46 0.001 28.5 8.7 75 31-109 30-104 (660)
425 PF12739 TRAPPC-Trs85: ER-Golg 70.9 62 0.0013 27.2 10.8 100 10-109 209-328 (414)
426 cd02677 MIT_SNX15 MIT: domain 70.5 11 0.00024 23.3 4.1 28 10-37 7-34 (75)
427 KOG1811|consensus 69.5 55 0.0012 29.1 9.1 67 46-112 586-655 (1141)
428 PF13226 DUF4034: Domain of un 69.2 52 0.0011 26.1 8.4 117 15-133 6-151 (277)
429 KOG4151|consensus 68.9 77 0.0017 28.8 10.1 80 5-88 87-168 (748)
430 cd02681 MIT_calpain7_1 MIT: do 68.5 16 0.00035 22.7 4.5 23 52-74 11-33 (76)
431 PF10952 DUF2753: Protein of u 68.4 32 0.0007 23.7 6.1 65 51-115 5-88 (140)
432 KOG4459|consensus 68.2 59 0.0013 27.6 8.8 121 9-130 31-182 (471)
433 PF08311 Mad3_BUB1_I: Mad3/BUB 67.5 37 0.0008 23.3 7.7 83 23-108 40-126 (126)
434 cd02679 MIT_spastin MIT: domai 67.5 15 0.00032 23.1 4.1 16 59-74 20-35 (79)
435 KOG1538|consensus 67.3 60 0.0013 29.2 8.9 42 152-193 800-841 (1081)
436 PRK15490 Vi polysaccharide bio 66.4 94 0.002 27.5 12.4 89 11-105 7-98 (578)
437 PF15469 Sec5: Exocyst complex 66.1 49 0.0011 24.1 9.0 27 95-121 153-179 (182)
438 TIGR00756 PPR pentatricopeptid 65.3 15 0.00032 17.8 3.9 20 17-36 8-27 (35)
439 PF04348 LppC: LppC putative l 65.3 2.1 4.5E-05 37.2 0.0 104 6-112 21-129 (536)
440 PF12753 Nro1: Nuclear pore co 64.2 20 0.00044 29.8 5.4 33 63-97 334-366 (404)
441 PF01239 PPTA: Protein prenylt 64.1 16 0.00035 17.9 4.5 26 67-92 3-28 (31)
442 PF13041 PPR_2: PPR repeat fam 63.9 22 0.00049 19.5 6.2 22 15-36 9-30 (50)
443 KOG1464|consensus 63.7 36 0.00078 27.1 6.4 54 21-75 39-93 (440)
444 TIGR00985 3a0801s04tom mitocho 63.4 21 0.00045 25.4 4.7 28 14-42 95-123 (148)
445 PF09797 NatB_MDM20: N-acetylt 63.2 26 0.00056 28.8 6.1 46 61-106 197-242 (365)
446 KOG4056|consensus 62.1 27 0.00058 24.4 4.9 28 14-42 86-113 (143)
447 TIGR03362 VI_chp_7 type VI sec 62.0 82 0.0018 25.3 8.9 65 10-75 214-278 (301)
448 COG2909 MalT ATP-dependent tra 61.9 1.4E+02 0.003 27.8 18.4 103 8-111 414-527 (894)
449 KOG4563|consensus 61.2 33 0.00073 28.2 6.0 62 8-70 40-106 (400)
450 PF04190 DUF410: Protein of un 61.0 78 0.0017 24.7 12.9 123 46-171 89-243 (260)
451 KOG1538|consensus 60.8 70 0.0015 28.8 8.2 17 15-31 709-725 (1081)
452 cd02679 MIT_spastin MIT: domai 59.5 22 0.00048 22.3 3.9 34 61-109 3-36 (79)
453 KOG1464|consensus 59.2 43 0.00093 26.7 6.1 85 11-95 193-286 (440)
454 PF02064 MAS20: MAS20 protein 59.1 32 0.0007 23.5 4.9 33 86-118 68-100 (121)
455 KOG3616|consensus 58.2 1.6E+02 0.0034 27.3 14.3 81 19-104 454-554 (1636)
456 PF07219 HemY_N: HemY protein 57.5 53 0.0012 21.7 7.2 25 86-110 64-88 (108)
457 cd00280 TRFH Telomeric Repeat 56.9 33 0.00071 25.5 4.9 48 56-104 120-167 (200)
458 PF13812 PPR_3: Pentatricopept 55.3 24 0.00052 17.1 4.1 23 51-73 5-27 (34)
459 PF02184 HAT: HAT (Half-A-TPR) 55.1 28 0.0006 17.7 3.3 15 63-77 3-17 (32)
460 KOG1497|consensus 54.7 1.2E+02 0.0026 24.8 12.6 87 46-133 102-198 (399)
461 KOG4014|consensus 54.7 89 0.0019 23.4 8.1 103 6-126 102-211 (248)
462 KOG2034|consensus 54.4 53 0.0012 30.3 6.7 50 54-107 365-415 (911)
463 PF05053 Menin: Menin; InterP 52.7 84 0.0018 27.6 7.3 45 65-109 297-346 (618)
464 KOG2114|consensus 52.5 1.3E+02 0.0028 27.9 8.6 31 9-39 368-398 (933)
465 cd02678 MIT_VPS4 MIT: domain c 52.3 45 0.00098 20.4 4.5 11 60-70 19-29 (75)
466 PF08311 Mad3_BUB1_I: Mad3/BUB 51.9 66 0.0014 22.0 5.7 45 27-74 81-126 (126)
467 PF12455 Dynactin: Dynein asso 51.0 1.2E+02 0.0026 23.9 10.1 65 8-78 114-178 (274)
468 KOG3677|consensus 50.9 37 0.00081 28.6 4.8 56 50-109 238-300 (525)
469 KOG3540|consensus 50.7 1.6E+02 0.0036 25.3 8.7 94 95-194 326-427 (615)
470 TIGR02710 CRISPR-associated pr 50.7 1.5E+02 0.0032 24.8 10.0 55 52-106 135-196 (380)
471 cd00280 TRFH Telomeric Repeat 50.5 54 0.0012 24.4 5.2 64 88-152 118-186 (200)
472 cd02683 MIT_1 MIT: domain cont 49.9 61 0.0013 20.1 9.5 12 59-70 18-29 (77)
473 KOG2561|consensus 49.6 1.7E+02 0.0036 25.1 15.8 100 9-109 163-295 (568)
474 KOG2114|consensus 49.0 1.7E+02 0.0037 27.2 8.8 60 16-79 341-401 (933)
475 KOG2063|consensus 48.1 2.4E+02 0.0052 26.5 12.7 171 9-182 504-710 (877)
476 PF08969 USP8_dimer: USP8 dime 48.0 51 0.0011 22.1 4.6 32 8-39 37-68 (115)
477 PF12753 Nro1: Nuclear pore co 46.7 38 0.00082 28.2 4.3 33 25-63 334-366 (404)
478 PF15297 CKAP2_C: Cytoskeleton 46.6 1.1E+02 0.0023 25.2 6.7 46 30-76 124-169 (353)
479 PF09797 NatB_MDM20: N-acetylt 46.4 99 0.0022 25.3 6.9 46 23-72 197-242 (365)
480 KOG2062|consensus 46.2 1E+02 0.0023 28.1 7.0 27 47-73 59-85 (929)
481 cd00215 PTS_IIA_lac PTS_IIA, P 46.1 57 0.0012 21.3 4.4 31 7-37 13-43 (97)
482 KOG1076|consensus 46.0 2.4E+02 0.0051 25.8 12.0 134 46-182 529-679 (843)
483 PF02255 PTS_IIA: PTS system, 46.0 59 0.0013 21.2 4.4 30 7-36 12-41 (96)
484 KOG4563|consensus 45.5 52 0.0011 27.2 4.8 58 47-104 41-106 (400)
485 COG5600 Transcription-associat 44.8 99 0.0022 25.7 6.3 61 53-113 183-252 (413)
486 TIGR00823 EIIA-LAC phosphotran 44.7 61 0.0013 21.3 4.4 31 7-37 15-45 (99)
487 KOG0890|consensus 44.4 4.1E+02 0.0088 28.1 15.7 65 45-111 1668-1732(2382)
488 PF12583 TPPII_N: Tripeptidyl 43.9 1.1E+02 0.0024 21.4 6.3 35 93-127 88-122 (139)
489 PF14689 SPOB_a: Sensor_kinase 43.8 64 0.0014 19.0 4.0 24 84-107 26-49 (62)
490 PRK09591 celC cellobiose phosp 43.3 66 0.0014 21.4 4.4 28 8-35 19-46 (104)
491 KOG4279|consensus 43.2 83 0.0018 28.9 6.0 72 21-96 255-335 (1226)
492 PF10366 Vps39_1: Vacuolar sor 42.5 41 0.0009 22.4 3.4 28 10-37 40-67 (108)
493 COG2015 Alkyl sulfatase and re 41.9 1.4E+02 0.0031 25.9 7.0 102 25-129 372-500 (655)
494 COG4259 Uncharacterized protei 41.2 80 0.0017 21.0 4.3 40 80-119 71-110 (121)
495 KOG2997|consensus 40.9 89 0.0019 25.4 5.4 35 7-42 17-51 (366)
496 COG1747 Uncharacterized N-term 40.8 2.6E+02 0.0055 24.7 10.0 100 2-108 59-158 (711)
497 smart00299 CLH Clathrin heavy 40.7 1.2E+02 0.0025 20.7 8.5 49 18-71 16-64 (140)
498 PRK10454 PTS system N,N'-diace 40.4 74 0.0016 21.6 4.3 28 8-35 30-57 (115)
499 PF04010 DUF357: Protein of un 40.3 71 0.0015 19.8 3.9 26 8-33 34-59 (75)
500 KOG1920|consensus 39.9 3.7E+02 0.0079 26.2 9.8 153 22-200 893-1066(1265)
No 1
>KOG4626|consensus
Probab=99.88 E-value=2.2e-22 Score=165.83 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=154.4
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
|++++|+...+++++|++|-..+.|+.|+.+|.+|+.+. |+ ++.++.++|..|+.+|..+-|+..|+++++++|.+
T Consensus 244 AvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn---~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F 319 (966)
T KOG4626|consen 244 AVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN---HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF 319 (966)
T ss_pred hhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc---chhhccceEEEEeccccHHHHHHHHHHHHhcCCCc
Confidence 578999999999999999999999999999999999999 99 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (206)
+++|.++|.++...|+..+|+.+|.+++.+.|+++++..+++.++.+.+..+.+.. +|.++++ .|.-....
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~--------ly~~al~v~p~~aaa~ 391 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR--------LYLKALEVFPEFAAAH 391 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH--------HHHHHHhhChhhhhhh
Confidence 99999999999999999999999999999999999999999999999988888555 7888887 67777777
Q ss_pred HHHHhhhhHhcccchhhHHH
Q psy1039 160 VTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~ 179 (206)
..++..|-++|+.++|+.+|
T Consensus 392 nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred hhHHHHHHhcccHHHHHHHH
Confidence 88888888888888887776
No 2
>KOG1126|consensus
Probab=99.87 E-value=1.6e-21 Score=161.52 Aligned_cols=174 Identities=17% Similarity=0.205 Sum_probs=164.9
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
++.+|+.++.|...|++|-.+++++.||++|++|+.++ |+ .+.+|..+|.-+.....|+.|..+|+.|+.++|.+.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~---faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PR---FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-Cc---cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 56789999999999999999999999999999999999 98 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV 160 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (206)
.|||.+|.+|.++++++.|.-.|++|+.++|.+..+...++..+.+++..++ +..+|++|+. +|.+.-.+.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~--------AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDK--------ALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhH--------HHHHHHHHHhcCCCCchhHH
Confidence 9999999999999999999999999999999999999999999999998888 6669999999 899999999
Q ss_pred HHHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039 161 TAVNNLVVLAREMSGAEMLLKSGVAKQINTLLK 193 (206)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (206)
..+..+..++++++|+..+ +.+.++..
T Consensus 562 ~~~~il~~~~~~~eal~~L------EeLk~~vP 588 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQEL------EELKELVP 588 (638)
T ss_pred HHHHHHHhhcchHHHHHHH------HHHHHhCc
Confidence 9999999999999999999 66655555
No 3
>KOG0548|consensus
Probab=99.84 E-value=1.1e-19 Score=147.60 Aligned_cols=178 Identities=24% Similarity=0.333 Sum_probs=155.5
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
.+|..+......|+.+|+.|+|..|+..|.++|..+ |+ ++.+|.|+|.||.++|.+..|+.+++.+++++|++..+
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~---Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE---DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc---hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 467788899999999999999999999999999999 99 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA 162 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 162 (206)
|++.|.++..+.+|+.|.+.|+.+++++|++..+...+.++......... .+...++... ++.........
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~--------~ee~~~r~~~dpev~~il~d~~ 500 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDET--------PEETKRRAMADPEVQAILQDPA 500 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCC--------HHHHHHhhccCHHHHHHHcCHH
Confidence 99999999999999999999999999999999999999998876533322 2234555555 44555555667
Q ss_pred HhhhhHhcccchhhHHHHhcch-HHHHHHHhc
Q psy1039 163 VNNLVVLAREMSGAEMLLKSGV-AKQINTLLK 193 (206)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 193 (206)
++..+.+.+..-|....|++|+ +.+|+++++
T Consensus 501 m~~~l~q~q~~pa~~~~~~n~~v~~ki~~l~~ 532 (539)
T KOG0548|consen 501 MRQILEQMQENPALQEHLKNPMVMQKIEKLIS 532 (539)
T ss_pred HHHHHHHHHhCHHHHHHHhccHHHHHHHHHHH
Confidence 7777777777669999999999 999999988
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.83 E-value=2.2e-19 Score=127.61 Aligned_cols=121 Identities=11% Similarity=0.148 Sum_probs=113.2
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
++.+|++ ++..|..++..|++++|+.+|++++..+ |. +..++.++|.++...|++++|+..|++++.++|+++
T Consensus 20 l~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 20 LSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQ-PW---SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 4566664 6789999999999999999999999999 99 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
.+++++|.++..+|++++|+..|++++.+.|+++......+.+...+.
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888776554
No 5
>KOG4626|consensus
Probab=99.83 E-value=2.6e-20 Score=153.76 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=94.0
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+.+.|+++.++.++|.+|+.+|..+-||.+|++++++. |+ ...++.++|.++-..|+..+|..+|++++.++|.++
T Consensus 279 l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~---F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha 354 (966)
T KOG4626|consen 279 LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PN---FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA 354 (966)
T ss_pred HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CC---chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence 34455555555555555555555555555555555555 55 555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV 160 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (206)
++++++|.++..+|.+++|...|+++++..|+...++.+++.++...++..+ +..+|+.++. .|.-.+...
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~--------Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDD--------AIMCYKEALRIKPTFADALS 426 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHH--------HHHHHHHHHhcCchHHHHHH
Confidence 5555555555555555555555555555555555555555555555555444 2235555555 455555555
Q ss_pred HHHhhhhHhcccchhhHHHH
Q psy1039 161 TAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~~ 180 (206)
..++.|-++|+-++|++++.
T Consensus 427 NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred hcchHHHHhhhHHHHHHHHH
Confidence 55555555555555555554
No 6
>KOG0553|consensus
Probab=99.83 E-value=8.4e-20 Score=139.43 Aligned_cols=123 Identities=32% Similarity=0.430 Sum_probs=115.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 85 (206)
..-++.+...|+-+++.++|++|+..|.+||.++ |+ ++.+|.++|.+|.++|.++.|+++|+.++.+||...++|.
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~ 153 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD-PT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYG 153 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHH
Confidence 3467889999999999999999999999999999 99 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 132 (206)
++|.+|..+|++.+|++.|+++++++|++...+..|..+...+++..
T Consensus 154 RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 154 RLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999988887776665544
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=1.3e-18 Score=150.67 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=112.8
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+..+|+....+..+|.++...|++++|+..|+++++.+ |+ ++.+++.+|.+++..|++++|+.+|++++.++|++.
T Consensus 358 l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SE---DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 34455556666666666666666666666666666666 65 566666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQ---------------------- 139 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------- 139 (206)
.+++.+|.++..+|++++|+..|++++...|+++.+...++.++...++..++...++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 6666666666666666666666666666666666666666666555554433321111
Q ss_pred -----------HHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 140 -----------NKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 140 -----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
..+..++++++. +|.+......++.++...|++++|+..+
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 124556777776 6777778888999999999999998887
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.1e-18 Score=151.09 Aligned_cols=163 Identities=18% Similarity=0.124 Sum_probs=153.8
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
+|+.+..+..+|.+++..|++++|+..|+++++++ |+ ....|..+|.++...|++++|+..|+++++++|+++.++
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 402 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR---VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY 402 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 58889999999999999999999999999999999 98 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (206)
+.+|.++...|++++|+.+|++++.++|++..++..++.++...++... +...|++++. .|.+.......+
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e--------A~~~~~~al~~~P~~~~~~~~lg 474 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIAS--------SMATFRRCKKNFPEAPDVYNYYG 474 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999888888 4558888887 788899999999
Q ss_pred hhhhHhcccchhhHHH
Q psy1039 164 NNLVVLAREMSGAEML 179 (206)
Q Consensus 164 ~~~~~~~~~~~a~~~~ 179 (206)
.++...|++++|...+
T Consensus 475 ~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKF 490 (615)
T ss_pred HHHHHccCHHHHHHHH
Confidence 9999999999988776
No 9
>KOG1155|consensus
Probab=99.79 E-value=1.3e-17 Score=133.78 Aligned_cols=173 Identities=13% Similarity=0.097 Sum_probs=149.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
||++||....+|-.+|+.|+...+...|++.|++|++++ |. +..+|+++|.+|..++.+-=|+-+|++|+++.|.+
T Consensus 356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~---DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD 431 (559)
T KOG1155|consen 356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR---DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND 431 (559)
T ss_pred HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch---hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 578999999999999999999999999999999999999 98 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhH
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRV 160 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (206)
+..|..+|.||.++++.++|+++|.+++.....+..+...++.++..+++..++...+..-+......-...|.....+.
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~ 511 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL 511 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988665333222222111111233445555
Q ss_pred HHHhhhhHhcccchhhH
Q psy1039 161 TAVNNLVVLAREMSGAE 177 (206)
Q Consensus 161 ~~~~~~~~~~~~~~a~~ 177 (206)
=+++.+...+++++|..
T Consensus 512 fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 512 FLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHhhcchHHHHH
Confidence 58888888888887765
No 10
>PRK12370 invasion protein regulator; Provisional
Probab=99.79 E-value=6.8e-18 Score=144.31 Aligned_cols=168 Identities=10% Similarity=-0.046 Sum_probs=144.2
Q ss_pred CcccchhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQ---------GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 71 (206)
++..+|+++.++..+|.++... +++++|+..++++++++ |+ ++.++..+|.++...|++++|+..|+
T Consensus 287 Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~ 362 (553)
T PRK12370 287 CVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HN---NPQALGLLGLINTIHSEYIVGSLLFK 362 (553)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4678999999999999877643 34899999999999999 99 89999999999999999999999999
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 72 KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 72 ~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
++++++|+++.+++.+|.++...|++++|+..++++++++|.++.+...+..+....++..+ +...+++++.
T Consensus 363 ~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ee--------A~~~~~~~l~ 434 (553)
T PRK12370 363 QANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDD--------AIRLGDELRS 434 (553)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHH--------HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998776665555555555544 4457777765
Q ss_pred --CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039 152 --TSAPMDKRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
+|........++.++..+|++++|...+-
T Consensus 435 ~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~ 465 (553)
T PRK12370 435 QHLQDNPILLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred hccccCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46677778889999999999988888763
No 11
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.77 E-value=3.5e-17 Score=114.95 Aligned_cols=122 Identities=16% Similarity=0.244 Sum_probs=113.8
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
++..+|++....+.+|..++..|++++|+..|++++..+ |. +...+.++|.++...|++++|+..+++++.++|++
T Consensus 9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PY---NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467899999999999999999999999999999999999 98 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 126 (206)
+..++.+|.++...|++++|...|+++++++|++.........+..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999876655554443
No 12
>KOG0624|consensus
Probab=99.77 E-value=4.7e-17 Score=126.59 Aligned_cols=192 Identities=20% Similarity=0.217 Sum_probs=162.5
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
.+|.+.+..+.+|..++..|++.+|+..|..|++.+ |+ +..+++.+|.+|+.+|+..-|+.++.+++++.|++..+
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~---~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A 108 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PN---NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA 108 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-ch---hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH
Confidence 467889999999999999999999999999999999 99 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcC-CCCC
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVTKRMQENEQL----QNKVHNMFKYVFD-TSAP 155 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~ 155 (206)
...+|.++..+|.+++|...|..++..+|++. ++...+..+........+....+ ...+..+....++ .|.+
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch
Confidence 99999999999999999999999999999664 44444443333222222221111 1246778888898 8999
Q ss_pred hhhhHHHHhhhhHhcccchhhHHHHhcchHHHHHHHhcccCChhhhhhhc
Q psy1039 156 MDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLALT 205 (206)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
...+...+.||..-|....|+..+ +.+.+|-+++++-.+.++.+
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dl------k~askLs~DnTe~~ykis~L 232 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDL------KQASKLSQDNTEGHYKISQL 232 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHH------HHHHhccccchHHHHHHHHH
Confidence 999999999999999999999999 88888888666666666653
No 13
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.76 E-value=1.2e-16 Score=126.58 Aligned_cols=106 Identities=19% Similarity=0.123 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
..+..++.+|..+...|++++|+..|+++++++ |+ ++.+|.++|.++...|++++|+..|+++++++|++..++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~ 137 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALR-PD---MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLN 137 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 448889999999999999999999999999999 99 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 116 (206)
+|.++...|++++|...++++++.+|+++.
T Consensus 138 lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 138 RGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999974
No 14
>KOG1155|consensus
Probab=99.75 E-value=7.1e-17 Score=129.51 Aligned_cols=164 Identities=15% Similarity=0.131 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la 88 (206)
++...-.|+.|...+++++|+.+|++|++++ |. ...+|...|.-|+.+++.+.|++.|++|+.++|.+..+||.+|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~---~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PK---YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cc---hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 4455667899999999999999999999999 99 8999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhh
Q psy1039 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV 167 (206)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 167 (206)
.+|.-++-..=|.-+|+++...-|+++.++..+|.++.++.+..+ +..+|++++. .+.+......+|..+-
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~e--------AiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEE--------AIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHH--------HHHHHHHHHhccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888 5559999999 6778899999999999
Q ss_pred HhcccchhhHHHHhcch
Q psy1039 168 VLAREMSGAEMLLKSGV 184 (206)
Q Consensus 168 ~~~~~~~a~~~~~~~~~ 184 (206)
++++..+|...+.|--+
T Consensus 478 ~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999999966544
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.75 E-value=8.9e-17 Score=137.48 Aligned_cols=159 Identities=9% Similarity=0.015 Sum_probs=140.9
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
|+..+|+++.++..+|.++...|++++|+..|+++++++ |+ ++.+++.+|.++...|++++|+..++++++++|.+
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~---~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PI---SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 467899999999999999999999999999999999999 99 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE-PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK 158 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (206)
+.+++.++.+++..|++++|+..+++++... |+++.++..++.++...++..+ +...++++.. .|.....
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~e--------A~~~~~~~~~~~~~~~~~ 477 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHEL--------ARKLTKEISTQEITGLIA 477 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHH--------HHHHHHHhhhccchhHHH
Confidence 9888888888899999999999999999875 7889999999999988888877 4446777666 5666666
Q ss_pred hHHHHhhhhHhcc
Q psy1039 159 RVTAVNNLVVLAR 171 (206)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (206)
...++..++..|+
T Consensus 478 ~~~l~~~~~~~g~ 490 (553)
T PRK12370 478 VNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHHhccHH
Confidence 7777777777764
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=5.7e-16 Score=116.99 Aligned_cols=161 Identities=12% Similarity=0.075 Sum_probs=143.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
..+..++.+|..++..|++++|+..++++++.. |+ +...+..+|.++...|++++|+..++++++..|.+..+++.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 104 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PD---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN 104 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 457889999999999999999999999999999 98 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVE--PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (206)
+|.++...|++++|...+++++... |........++.++...++... +..++.+++. .|.+......++
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--------A~~~~~~~~~~~~~~~~~~~~la 176 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK--------AEKYLTRALQIDPQRPESLLELA 176 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCcCChHHHHHHH
Confidence 9999999999999999999999853 4556677788888888777777 4457888877 677788888999
Q ss_pred hhhhHhcccchhhHHH
Q psy1039 164 NNLVVLAREMSGAEML 179 (206)
Q Consensus 164 ~~~~~~~~~~~a~~~~ 179 (206)
.++...|++++|...+
T Consensus 177 ~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 177 ELYYLRGQYKDARAYL 192 (234)
T ss_pred HHHHHcCCHHHHHHHH
Confidence 9999999999888877
No 17
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.74 E-value=2.3e-16 Score=111.32 Aligned_cols=110 Identities=14% Similarity=0.107 Sum_probs=103.7
Q ss_pred ccc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 3 DNN-MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 3 ~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
..+ ++.-+.+|..|..++..|++++|...|+-.+.++ |. ++..|+++|.|+..+|+|.+|+..|.+++.++|+++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 345 7888999999999999999999999999999999 99 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 116 (206)
.++++.|.|++..|+.+.|.+.|+.++.....++.
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99999999999999999999999999998754433
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.73 E-value=4e-16 Score=117.82 Aligned_cols=166 Identities=13% Similarity=0.167 Sum_probs=145.4
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--CC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PD 79 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p~ 79 (206)
+..+|++...+..+|..+...|++++|+..|+++++.. |. +...+.++|.++...|++++|+..|.+++... |.
T Consensus 58 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 58 LEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN---NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 45678899999999999999999999999999999999 98 78899999999999999999999999999864 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039 80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK 158 (206)
Q Consensus 80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (206)
....++.+|.++...|++++|...+.+++..+|+++.+...++.++...++..++. .+++++.. .|.+...
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~--------~~~~~~~~~~~~~~~~ 205 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR--------AYLERYQQTYNQTAES 205 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH--------HHHHHHHHhCCCCHHH
Confidence 67889999999999999999999999999999999999999999998888877744 46666666 4666777
Q ss_pred hHHHHhhhhHhcccchhhHHH
Q psy1039 159 RVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~ 179 (206)
....+.++...|+.++|....
T Consensus 206 ~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 206 LWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 777888888888888876654
No 19
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.73 E-value=1.1e-16 Score=119.53 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=107.6
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HHccC--HHHHHHHHHHHhhhCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY-LKQNQ--NDKVIEDCSKSLEIVP 78 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~l~p 78 (206)
+..+|++++.|..+|.++...|++++|+..|++++++. |+ +..++..+|.++ ...|+ +++|...++++++++|
T Consensus 66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~---~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GE---NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 56799999999999999999999999999999999999 99 899999999975 67787 5999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 121 (206)
+++.+++.+|.++...|++++|+..|+++++++|.+.+-...+
T Consensus 142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999999999999999999999999999999876655444
No 20
>KOG1126|consensus
Probab=99.73 E-value=7.9e-17 Score=133.88 Aligned_cols=151 Identities=16% Similarity=0.301 Sum_probs=138.6
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
||..+|++-.+||.+|++|++.++++.|.-+|++|++++ |. +..+...+|..+.++|+.++|+..|++|+.++|.+
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~---nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PS---NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-cc---chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 578899999999999999999999999999999999999 99 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (206)
+-+.|.+|.+++.++++++|...++..-++-|++..++..++.++.++++... +...|..|.+ +|.-.++.
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~--------Al~~f~~A~~ldpkg~~i~ 628 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL--------ALLHFSWALDLDPKGAQIQ 628 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH--------HHHhhHHHhcCCCccchhh
Confidence 99999999999999999999999999999999999999999999999999888 4459999998 55444444
Q ss_pred HHHH
Q psy1039 160 VTAV 163 (206)
Q Consensus 160 ~~~~ 163 (206)
...+
T Consensus 629 ~k~~ 632 (638)
T KOG1126|consen 629 IKAA 632 (638)
T ss_pred HHHH
Confidence 4443
No 21
>KOG0547|consensus
Probab=99.73 E-value=2.3e-16 Score=127.33 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=130.0
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
..++|+++..++.+|..++-.++|++|+.-|+++++++ |+ +.-.+..+|.+.++++++.++...|+.+.+..|..+
T Consensus 387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe---~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~ 462 (606)
T KOG0547|consen 387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PE---NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP 462 (606)
T ss_pred HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 45678888888888888888888888888888888888 77 777778888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC-CC
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT------NKAIQPVLSRLFAIV-TKRMQENEQLQNKVHNMFKYVFD-TS 153 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (206)
+++...|.++...++|+.|++.|.+++.+.|. ++.-...-+.+..+. ++.. .+.++.+++++ +|
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~--------~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDIN--------QAENLLRKAIELDP 534 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHH--------HHHHHHHHHHccCc
Confidence 88888888888888888888888888888877 322222222222211 1112 36779999999 89
Q ss_pred CChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039 154 APMDKRVTAVNNLVVLAREMSGAEMLLKSGV 184 (206)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 184 (206)
.+......++...+++|+.++|++.+-++-.
T Consensus 535 kce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999998865554
No 22
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.72 E-value=7.7e-16 Score=113.81 Aligned_cols=161 Identities=17% Similarity=0.051 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
.+.+...+|.-|+..|++..|...+++|++.+ |+ ...+|..+|..|.+.|+.+.|.+.|++|+.++|++.+++.+.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHD-PS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 46788899999999999999999999999999 99 899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHh
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRV--EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVN 164 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 164 (206)
|.-++..|++++|...|++++.. .|..+..+.+++.+..+.++..+ ++.+|++++. +|........++.
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~--------A~~~l~raL~~dp~~~~~~l~~a~ 181 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQ--------AEEYLKRALELDPQFPPALLELAR 181 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchh--------HHHHHHHHHHhCcCCChHHHHHHH
Confidence 99999999999999999999873 45667889999999988888888 4459999999 7888888999999
Q ss_pred hhhHhcccchhhHHHH
Q psy1039 165 NLVVLAREMSGAEMLL 180 (206)
Q Consensus 165 ~~~~~~~~~~a~~~~~ 180 (206)
.+...|++-.|...+.
T Consensus 182 ~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 182 LHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHhcccchHHHHHHH
Confidence 9999999977766663
No 23
>KOG0543|consensus
Probab=99.72 E-value=5.6e-16 Score=123.04 Aligned_cols=129 Identities=33% Similarity=0.519 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
..+......|+.+|+.|+|..|...|++++..- +. ......++.|++.|+.++++|.+|+..|+++|
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l-~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFL-EYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHh-hccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345677889999999999999999999999865 32 12345578999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039 75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 75 ~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
+++|.|.+++|++|.++..+|+|+.|...|+++++++|+|..+...+..+..+.++...+++
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888887766544
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=5e-16 Score=139.08 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH
Q psy1039 18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF 97 (206)
Q Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 97 (206)
.....|++++|+..|+++++++ |+ ...+.++|.++.++|++++|+..|++++.++|+++.++.++|.++...|++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~-P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIA-PS----ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3333344444444444444444 43 334445555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhh
Q psy1039 98 EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGA 176 (206)
Q Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 176 (206)
++|+..|+++++++|+++.++..++.++...++... +..+|++++. .|....+....++......++..+.
T Consensus 660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e--------A~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 660 AQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA--------TQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 555555555555555555555555555554444444 2234445444 4444455555555555544444444
Q ss_pred HHH
Q psy1039 177 EML 179 (206)
Q Consensus 177 ~~~ 179 (206)
+.+
T Consensus 732 ~~~ 734 (987)
T PRK09782 732 EEV 734 (987)
T ss_pred HHH
Confidence 444
No 25
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.71 E-value=1.2e-15 Score=117.07 Aligned_cols=174 Identities=16% Similarity=0.166 Sum_probs=138.1
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH-
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK- 82 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~- 82 (206)
.++..+..++..|..++..|++++|+..|++++... |+.+....+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 456788999999999999999999999999999999 874444578899999999999999999999999999998876
Q ss_pred --HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q psy1039 83 --ALFRRCQAYEAI--------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM----------QENEQLQNKV 142 (206)
Q Consensus 83 --~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~~ 142 (206)
+++.+|.++... |++++|++.+++++..+|++......+..+........ ...+.. ..+
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~-~~A 185 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY-VAA 185 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-HHH
Confidence 799999999987 89999999999999999999766544433222111100 000111 124
Q ss_pred HHHHHHhcC-CC---CChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 143 HNMFKYVFD-TS---APMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 143 ~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
...|++++. .| .....+...+.++...|++++|...+
T Consensus 186 ~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 186 INRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 557777776 33 34678899999999999999998865
No 26
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.71 E-value=4.9e-16 Score=125.99 Aligned_cols=116 Identities=20% Similarity=0.359 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~ 90 (206)
.+...|..++..|+|++|+.+|.++++++ |+ +..+++++|.++..+|++++|+.++++++.++|+++.+++++|.+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLD-PN---NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 47788999999999999999999999999 99 899999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039 91 YEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (206)
Q Consensus 91 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 130 (206)
+..+|+|++|+..|++++.++|+++.+...++.+...+..
T Consensus 80 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888777754
No 27
>KOG0547|consensus
Probab=99.71 E-value=5.4e-16 Score=125.23 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=140.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
-+.++...|..++-.|++-.|..-|+.+|.++ |. ....|..+|.+|....+..+-..+|++|..++|.++++|+.+
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-~~---~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHR 400 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-PA---FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHR 400 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-cc---cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhH
Confidence 37788889999999999999999999999999 87 667788899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhh
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL 166 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 166 (206)
|.+++-+++|++|+..|++++.++|++.-....+.-+..+.++... .+..|+.+.. .|...+.-.-.++++
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~--------~m~~Fee~kkkFP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAE--------SMKTFEEAKKKFPNCPEVYNLFAEIL 472 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 9999999999999999999999999998888888888777776666 4447777777 788888888999999
Q ss_pred hHhcccchhhHHH
Q psy1039 167 VVLAREMSGAEML 179 (206)
Q Consensus 167 ~~~~~~~~a~~~~ 179 (206)
..+++|++|.+.|
T Consensus 473 tDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 473 TDQQQFDKAVKQY 485 (606)
T ss_pred hhHHhHHHHHHHH
Confidence 9999999998888
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.70 E-value=1.1e-15 Score=132.96 Aligned_cols=158 Identities=13% Similarity=0.125 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHH----HHHHHHHHhhhCCCCHHHHHH
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK----VIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~l~p~~~~~~~~ 86 (206)
.....|..+...|++++|+..|.+++... |+ +...+.++|.++...|++++ |+..|++++.++|++..++..
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~---~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~ 289 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARG-LD---GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTL 289 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 34556788889999999999999999998 88 78899999999999999986 899999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN 165 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 165 (206)
+|.++...|++++|...+++++.++|+++.+...++.++...++..+ +...|++++. .|.........+.+
T Consensus 290 lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e--------A~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 290 YADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA--------ASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHhCccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888877 4447788776 56666666667888
Q ss_pred hhHhcccchhhHHHH
Q psy1039 166 LVVLAREMSGAEMLL 180 (206)
Q Consensus 166 ~~~~~~~~~a~~~~~ 180 (206)
+...|++++|...+-
T Consensus 362 l~~~G~~deA~~~l~ 376 (656)
T PRK15174 362 LLQAGKTSEAESVFE 376 (656)
T ss_pred HHHCCCHHHHHHHHH
Confidence 999999999888874
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.70 E-value=9.2e-16 Score=141.06 Aligned_cols=177 Identities=15% Similarity=0.128 Sum_probs=146.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHH-----------HHHHHHHHHHHHHHccCHHHHHHH
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE-----------RATCLKNRAAVYLKQNQNDKVIED 69 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~-----------~~~~~~~la~~~~~~~~~~~A~~~ 69 (206)
++..+|+++..++.+|.+++..|++++|+.+|+++++.+ |+... .......+|.++...|++++|+..
T Consensus 295 aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD-PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356789999999999999999999999999999999999 86211 012234568899999999999999
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH-------------
Q psy1039 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE------------- 136 (206)
Q Consensus 70 ~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~------------- 136 (206)
|++++.++|++..+++.+|.++...|++++|++.|+++++++|++..+...++.++... ...++..
T Consensus 374 ~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 374 YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ-SPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888887775321 1110000
Q ss_pred ----------------------HHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 137 ----------------------QLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 137 ----------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.....+...|++++. .|.+......++.++...|++++|...+
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 001235678888888 7888999999999999999999888877
No 30
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.69 E-value=1.3e-15 Score=108.24 Aligned_cols=126 Identities=10% Similarity=0.061 Sum_probs=113.9
Q ss_pred HHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1039 29 LDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108 (206)
Q Consensus 29 ~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 108 (206)
..+|+++++++ |+ + ++.+|.++...|++++|+..|.+++.++|.+..+++.+|.++...|++++|+..|++++
T Consensus 13 ~~~~~~al~~~-p~---~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLSVD-PE---T---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHcC-HH---H---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35799999999 86 3 56789999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHh
Q psy1039 109 RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVL 169 (206)
Q Consensus 109 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 169 (206)
.++|+++.++..++.++...++... +...|++++. .|.+...+...+.+....
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~e--------Ai~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGL--------AREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999888 5559999988 788888887777665543
No 31
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.68 E-value=2.6e-15 Score=130.72 Aligned_cols=168 Identities=11% Similarity=0.113 Sum_probs=79.6
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
.+|+++.++..+|..+...|++++|+..|++++.+. |+ +..++..+|.++...|++++|+..+.+++..+|+++.+
T Consensus 105 ~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~---~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a 180 (656)
T PRK15174 105 VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SG---NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM 180 (656)
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH
Confidence 445555555555555555555555555555555555 54 44444444444444444444444444444444433332
Q ss_pred HHHH----------------------------------HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 84 LFRR----------------------------------CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 84 ~~~l----------------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
++.. +.++...|++++|+..+++++..+|+++.+...++.++...+
T Consensus 181 ~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 181 IATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSG 260 (656)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 2111 223333334444444444444444444444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 130 KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+...+. ..+..+|++++. .|.+...+..++..+...|++++|...+
T Consensus 261 ~~~eA~----~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 261 RSREAK----LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred CchhhH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 332210 013455666666 5666666666666666666666665554
No 32
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.68 E-value=3.8e-15 Score=132.49 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=146.6
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
..|.++..+..+|..++..|++++|+..|.+++... |+ . ..+..++.++...|++++|+..+++++..+|+++.+
T Consensus 698 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 772 (899)
T TIGR02917 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-PS---S-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772 (899)
T ss_pred hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CC---c-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 456778888899999999999999999999999998 87 3 677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA 162 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 162 (206)
++.+|.++...|++++|...|++++..+|+++.+...++.++...++ .+ +..++++++. .|.+.......
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~--------A~~~~~~~~~~~~~~~~~~~~~ 843 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR--------ALEYAEKALKLAPNIPAILDTL 843 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH--------HHHHHHHHHhhCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999888877766 44 4557777777 67778888888
Q ss_pred HhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039 163 VNNLVVLAREMSGAEMLLKSGVAKQINTLLK 193 (206)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (206)
+.++...|++++|.+.+ .++.++..
T Consensus 844 ~~~~~~~g~~~~A~~~~------~~a~~~~~ 868 (899)
T TIGR02917 844 GWLLVEKGEADRALPLL------RKAVNIAP 868 (899)
T ss_pred HHHHHHcCCHHHHHHHH------HHHHhhCC
Confidence 88999999999888887 66665544
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=3.1e-15 Score=134.06 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la 88 (206)
...++..|..+...|++++|+.+|++++... |+ ....+..++......|++++|+..|+++++++|+ ..+++.+|
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~---~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA 616 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG---DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARA 616 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc---cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 4457888999999999999999999999999 88 6777777777777889999999999999999996 99999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhh
Q psy1039 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV 167 (206)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 167 (206)
.++..+|++++|+..|++++.++|+++.++..++.++...++..+ +..+|++++. .|.+...+..++.++.
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee--------Ai~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ--------SREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888777 5558999888 7999999999999999
Q ss_pred HhcccchhhHHH
Q psy1039 168 VLAREMSGAEML 179 (206)
Q Consensus 168 ~~~~~~~a~~~~ 179 (206)
..|++++|...+
T Consensus 689 ~lGd~~eA~~~l 700 (987)
T PRK09782 689 RLDDMAATQHYA 700 (987)
T ss_pred HCCCHHHHHHHH
Confidence 999999998887
No 34
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.67 E-value=3.6e-15 Score=110.30 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=139.5
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh--CC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--VP 78 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--~p 78 (206)
||..+|+...+|..++.+|...|+.+.|-+.|++|+.+. |+ +.+++.|.|.-+..+|+|++|...|++|+.. .|
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~---~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~ 136 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PN---NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYG 136 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CC---ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCC
Confidence 578899999999999999999999999999999999999 99 9999999999999999999999999999964 34
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChh
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMD 157 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (206)
.-.+++-++|.|..+.|+++.|..+|+++++++|+++.....+...+...++...+. .++++... .+...+
T Consensus 137 ~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar--------~~~~~~~~~~~~~A~ 208 (250)
T COG3063 137 EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR--------LYLERYQQRGGAQAE 208 (250)
T ss_pred CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH--------HHHHHHHhcccccHH
Confidence 667899999999999999999999999999999999999999999999888888744 47777666 455555
Q ss_pred hhHHHHhhhhHhcccchh
Q psy1039 158 KRVTAVNNLVVLAREMSG 175 (206)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a 175 (206)
......+.--..|+-+.+
T Consensus 209 sL~L~iriak~~gd~~~a 226 (250)
T COG3063 209 SLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HHHHHHHHHHHhccHHHH
Confidence 444444444444554433
No 35
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.66 E-value=6.5e-15 Score=131.04 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=151.7
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
...|++ ..+..+|..+...|++++|+..++++++.. |+ +..+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 731 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 805 (899)
T TIGR02917 731 KRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN---DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV 805 (899)
T ss_pred hhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH
Confidence 345655 678889999999999999999999999999 98 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (206)
++..+|.++...|+ .+|+..+++++.+.|+++.....++.++...++..+ +..+|++++. .|.+..+...
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------A~~~~~~a~~~~~~~~~~~~~ 876 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR--------ALPLLRKAVNIAPEAAAIRYH 876 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhhCCCChHHHHH
Confidence 99999999999999 889999999999999999999999999988888887 5559999998 6889999999
Q ss_pred HHhhhhHhcccchhhHHH
Q psy1039 162 AVNNLVVLAREMSGAEML 179 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~ 179 (206)
++.++...|++++|.+.+
T Consensus 877 l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 877 LALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 999999999999999887
No 36
>KOG4234|consensus
Probab=99.65 E-value=8.3e-15 Score=106.34 Aligned_cols=129 Identities=37% Similarity=0.578 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
..+..+...|+-+|..|+|.+|...|..|+.++ |.. ...+.+|.++|.|+.++++++.|+..|.++++++|.+.+++
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 346678889999999999999999999999999 752 34567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
.++|.+|.++..|++|+..|+++++.+|....+...+.++-..+..+..+.+
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK 223 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK 223 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988887777666543
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.65 E-value=2.1e-14 Score=117.72 Aligned_cols=169 Identities=12% Similarity=0.085 Sum_probs=124.1
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
+..+|++...+..+|..+...|++++|+..+++++... +.. ......+..+|.+|...|++++|+..|.++++.+|.+
T Consensus 62 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~ 140 (389)
T PRK11788 62 LKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA 140 (389)
T ss_pred HhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch
Confidence 45678888888888888888888888888888887753 221 1134567788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-----IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSA 154 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (206)
..++..++.++...|++++|...+++++...|.+.. ....++.++...++... +..+|++++. .|.
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--------A~~~~~~al~~~p~ 212 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA--------ARALLKKALAADPQ 212 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH--------HHHHHHHHHhHCcC
Confidence 888888888888888888888888888887776533 22334444444444444 4457777776 566
Q ss_pred ChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 155 PMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.......++..+...|++++|.+.+
T Consensus 213 ~~~~~~~la~~~~~~g~~~~A~~~~ 237 (389)
T PRK11788 213 CVRASILLGDLALAQGDYAAAIEAL 237 (389)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777788888888888888777765
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.64 E-value=9.9e-15 Score=134.31 Aligned_cols=166 Identities=7% Similarity=0.021 Sum_probs=111.8
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH--------
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS-------- 73 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-------- 73 (206)
+..+|+++..++.+|.++...|++++|+..|++++... |+ ++..++.+|..+...+++++|+..++++
T Consensus 488 l~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~---~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~ 563 (1157)
T PRK11447 488 LALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PN---DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN 563 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh
Confidence 34455555566666666666666666666666666555 54 3444444444443444444433333221
Q ss_pred --------------------------------hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039 74 --------------------------------LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (206)
Q Consensus 74 --------------------------------l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 121 (206)
++.+|.++..++.+|.++...|++++|+..|+++++.+|+++.+...+
T Consensus 564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~l 643 (1157)
T PRK11447 564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGL 643 (1157)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 123455555666778888888899999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 122 SRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+.++...++..+ +...++++.. .|.+......++.++...|++++|.+.+
T Consensus 644 a~~~~~~g~~~e--------A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 644 IEVDIAQGDLAA--------ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HHHHHHCCCHHH--------HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 888888887777 4457777777 5777788888888888888888888777
No 39
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.63 E-value=2.1e-14 Score=124.57 Aligned_cols=136 Identities=7% Similarity=-0.016 Sum_probs=129.5
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
..|+++++++.+|.+....|.+++|+.+++.++++. |+ +..++.+++.++.+.+++++|+..+++++..+|++..+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd---~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PD---SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CC---cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 357789999999999999999999999999999999 99 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
++.+|.++..+|++++|...|++++..+|+++.++..++.++...++.+. +...|+++++
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~--------A~~~~~~a~~ 216 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWR--------ARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888 4458888887
No 40
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.63 E-value=3.9e-14 Score=116.10 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=112.4
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcH--HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH--ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
.+|.+...+..++.++...|++++|+..+.+++... |... .....+..+|..+...|++++|+..|+++++.+|++.
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 136 EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV 214 (389)
T ss_pred CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence 345556666666666666777777777666666665 5311 1123455677777777778888888887777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN-KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (206)
.+++.+|.++...|++++|...+++++..+|.+ ..+...++.++...++..+ +...++++.. .|.. ...
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~--------A~~~l~~~~~~~p~~-~~~ 285 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE--------GLEFLRRALEEYPGA-DLL 285 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCc-hHH
Confidence 777777888888888888888888777777765 3445566666666665555 3346666666 4443 334
Q ss_pred HHHHhhhhHhcccchhhHHHH
Q psy1039 160 VTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~ 180 (206)
...+..+...|++++|...+.
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 778888888888888777663
No 41
>PLN02789 farnesyltranstransferase
Probab=99.63 E-value=2.5e-14 Score=113.96 Aligned_cols=163 Identities=12% Similarity=0.012 Sum_probs=137.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHhhhC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN--DKVIEDCSKSLEIV 77 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~l~ 77 (206)
+|..+|++..+|..+|.++...| ++++++..+.++++.+ |+ +..+|.+++.++..+|+. .+++..++++++++
T Consensus 63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pk---nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d 138 (320)
T PLN02789 63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PK---NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD 138 (320)
T ss_pred HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-Cc---chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC
Confidence 36789999999999999999999 6899999999999999 99 899999999999999874 78899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy1039 78 PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM 156 (206)
Q Consensus 78 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (206)
|.|..+|..+|.++..+|+|++|++.+.++++.+|.|..++...+.+...++...... ........+..+++. .|.+.
T Consensus 139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~-~~~e~el~y~~~aI~~~P~N~ 217 (320)
T PLN02789 139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE-AMRDSELKYTIDAILANPRNE 217 (320)
T ss_pred cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc-ccHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999999998876552211100 011123446656666 78888
Q ss_pred hhhHHHHhhhhH
Q psy1039 157 DKRVTAVNNLVV 168 (206)
Q Consensus 157 ~~~~~~~~~~~~ 168 (206)
..+.-...++..
T Consensus 218 SaW~Yl~~ll~~ 229 (320)
T PLN02789 218 SPWRYLRGLFKD 229 (320)
T ss_pred CHHHHHHHHHhc
Confidence 888777777766
No 42
>KOG0548|consensus
Probab=99.63 E-value=1.2e-14 Score=118.66 Aligned_cols=176 Identities=23% Similarity=0.301 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
......|+..+..|+|+.|+.+|..+|.++ |. ++.+|.++..+|..+|+|.+|+++..+.++++|+.++.|.++|.
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~-p~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLS-PT---NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGA 78 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccC-CC---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHH
Confidence 346678999999999999999999999999 98 89999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CChhhhH-HHHhhhh
Q psy1039 90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTS-APMDKRV-TAVNNLV 167 (206)
Q Consensus 90 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 167 (206)
++..+|+|++|+..|.+.++.+|+|......+..+........+. .. --.++.+....| ....... .....+.
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~----~~-~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQL----FT-KPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhh----cc-CcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 999999999999999999999999999999999888322222111 10 112333333323 2222222 2333444
Q ss_pred HhcccchhhHHHHhcch-HHHHHHHhcc
Q psy1039 168 VLAREMSGAEMLLKSGV-AKQINTLLKC 194 (206)
Q Consensus 168 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~ 194 (206)
...+.+..+.-++.+|- ++....++.+
T Consensus 154 ~~~~~p~~l~~~l~d~r~m~a~~~l~~~ 181 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLNDPRLMKADGQLKGV 181 (539)
T ss_pred HhhcCcHhhhcccccHHHHHHHHHHhcC
Confidence 44555888888888776 6666666653
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=8.7e-15 Score=115.17 Aligned_cols=163 Identities=18% Similarity=0.242 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
.++..+......+...|+++++...+..+.... + .+.++..|..+|.++.+.|++++|+..|+++++++|+++.+...
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~ 185 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELP-A-APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNA 185 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 456667777888899999999999999977543 1 11278889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN 165 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 165 (206)
++.++...|+++++...++......|+++..+..++.++..+++..+ +..+|+++.. .|.+..+....+.+
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~--------Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE--------ALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH--------HHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc--------ccccccccccccccccccccccccc
Confidence 99999999999999999999888889999999999999999999888 5558888888 89999999999999
Q ss_pred hhHhcccchhhHHH
Q psy1039 166 LVVLAREMSGAEML 179 (206)
Q Consensus 166 ~~~~~~~~~a~~~~ 179 (206)
+...|+.++|...+
T Consensus 258 l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 258 LEQAGRKDEALRLR 271 (280)
T ss_dssp HT------------
T ss_pred cccccccccccccc
Confidence 99999999999877
No 44
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.60 E-value=4.6e-14 Score=96.44 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALF 85 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~ 85 (206)
++.++..|..++..|++++|+..|.+++... |+.+....+++.+|.+++..|++++|+..|++++..+|++ +.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 4678999999999999999999999999998 8743346789999999999999999999999999999885 67899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 121 (206)
.+|.++..+|++++|...+++++...|+++.+....
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 999999999999999999999999999987765543
No 45
>KOG1125|consensus
Probab=99.60 E-value=1.8e-14 Score=118.46 Aligned_cols=169 Identities=13% Similarity=0.159 Sum_probs=145.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---- 76 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---- 76 (206)
|++++|.++++|..+|.+....++=..||.-++++++++ |+ +..++..||.+|...|.=.+|+..+.+=++.
T Consensus 311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~---NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y 386 (579)
T KOG1125|consen 311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PT---NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY 386 (579)
T ss_pred HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-Cc---cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc
Confidence 467899999999999999999999999999999999999 99 8999999999998777766666666554433
Q ss_pred -------------------------------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039 77 -------------------------------------VP--DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117 (206)
Q Consensus 77 -------------------------------------~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 117 (206)
+| .++++...||.+|...|+|+.|+.+|+.|+...|+|..+
T Consensus 387 ~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l 466 (579)
T KOG1125|consen 387 VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL 466 (579)
T ss_pred hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH
Confidence 33 346678889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039 118 QPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLK 181 (206)
Q Consensus 118 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 181 (206)
|+.+|-...--.+..+ +...|+++++ .|.-.+.|..+|...+.+|-|++|.++++.
T Consensus 467 WNRLGAtLAN~~~s~E--------AIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 467 WNRLGATLANGNRSEE--------AISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHhhHHhcCCcccHH--------HHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9999888765555555 5568999999 799999999999999999999999998864
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.59 E-value=6.8e-14 Score=104.51 Aligned_cols=118 Identities=11% Similarity=0.121 Sum_probs=110.0
Q ss_pred cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHH-HHcCC--HH
Q psy1039 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY-EAIGK--FE 98 (206)
Q Consensus 22 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~-~~~g~--~~ 98 (206)
.++.++++..+++++..+ |+ +...|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ ++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~---~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQ---NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 456688999999999999 99 8999999999999999999999999999999999999999999985 67788 59
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 99 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
+|...++++++.+|+++.++..++..+...++..+ +..+++++++
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~--------Ai~~~~~aL~ 172 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQ--------AIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH--------HHHHHHHHHh
Confidence 99999999999999999999999999999999988 5559999888
No 47
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.58 E-value=1.3e-13 Score=100.88 Aligned_cols=111 Identities=30% Similarity=0.466 Sum_probs=99.0
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..++..+..++.+|..+...|++++|+.+|++++... |+......++.++|.++...|++++|+..+.+++.++|.+..
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 4566788899999999999999999999999999987 753334678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCC
Q psy1039 83 ALFRRCQAYEAIGK--------------FEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 83 ~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 114 (206)
++..+|.++...|+ +.+|.+.+++++..+|++
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999988 577788888888888876
No 48
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.58 E-value=1.6e-13 Score=103.44 Aligned_cols=164 Identities=13% Similarity=0.146 Sum_probs=141.7
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..+|++... ......+...|+-+.++.+..++.... |. ........|...+..|+|.+|+..++++.++.|++++
T Consensus 61 ~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~---d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~ 135 (257)
T COG5010 61 LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PK---DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE 135 (257)
T ss_pred hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cc---cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh
Confidence 346778888 889999999999999888888877777 76 6667777999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (206)
+|..+|.+|-+.|++++|...|.+++++.|+++.+..+++-.+...++.+.+ ..++..+.. ++.+..+...
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A--------~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDA--------ETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHH--------HHHHHHHHhCCCCchHHHHH
Confidence 9999999999999999999999999999999999999999999888888884 447777766 6678999999
Q ss_pred HHhhhhHhcccchhhHHH
Q psy1039 162 AVNNLVVLAREMSGAEML 179 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~ 179 (206)
++.....+|+++.|-...
T Consensus 208 LAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 208 LALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHhhcCChHHHHhhc
Confidence 999999999987665544
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.57 E-value=1.5e-13 Score=109.06 Aligned_cols=148 Identities=16% Similarity=0.087 Sum_probs=119.1
Q ss_pred cCCHHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1039 22 QGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100 (206)
Q Consensus 22 ~g~~~~A~~~~~~al~~~~p-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A 100 (206)
.+..+.++..+.+++... | ++...+..|+.+|.++...|++.+|+..|+++++++|+++.+|+.+|.++...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456788999999999744 3 11225888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 101 YTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 101 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
...|+++++++|++..++..++.++...++... +...|++++. .|.+.. +..........+++++|...+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~e--------A~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYEL--------AQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHH
Confidence 999999999999999999999999988888888 4447777777 555542 222222223344556666655
No 50
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.56 E-value=1.8e-13 Score=95.90 Aligned_cols=116 Identities=9% Similarity=0.067 Sum_probs=106.2
Q ss_pred HHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 30 ~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
+.|++++... |+ +....+.+|.++...|++.+|+..+++++.++|.++.+++.+|.++...|++++|...+++++.
T Consensus 4 ~~~~~~l~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 4 ATLKDLLGLD-SE---QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hhHHHHHcCC-hh---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999 98 7888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChh
Q psy1039 110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMD 157 (206)
Q Consensus 110 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (206)
.+|+++..+..++.++...++... +..+|++++. .|.+..
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~--------A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPES--------ALKALDLAIEICGENPE 120 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhccccch
Confidence 999999999999999999988887 4458888888 555544
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=4e-14 Score=111.42 Aligned_cols=179 Identities=18% Similarity=0.238 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-----------------------------HHHHHHHHHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-----------------------------HERATCLKNRAAV 56 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-----------------------------~~~~~~~~~la~~ 56 (206)
|+++..|..+|......|+++.|+..|++.+..+ +.. ..++..+.....+
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~ 119 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccchhhHHHHH
Confidence 5566666666666666666666666666666655 320 1135556677778
Q ss_pred HHHccCHHHHHHHHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHH
Q psy1039 57 YLKQNQNDKVIEDCSKSLEIV--PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE 134 (206)
Q Consensus 57 ~~~~~~~~~A~~~~~~al~l~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 134 (206)
+...++++++...++++.... |.++..|+.+|.++...|++++|...|++++.++|+++.+...+..+....++..+.
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHH
Confidence 889999999999999977665 678899999999999999999999999999999999999999998888777766652
Q ss_pred HHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHhcchHHHHHHHhcccCChhhh
Q psy1039 135 NEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIY 201 (206)
Q Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (206)
...++.... .|.+...+...+.++..+|++++|+..+ .+..+... +||.+.
T Consensus 200 --------~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~------~~~~~~~p--~d~~~~ 251 (280)
T PF13429_consen 200 --------REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL------EKALKLNP--DDPLWL 251 (280)
T ss_dssp --------HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH------HHHHHHST--T-HHHH
T ss_pred --------HHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc------cccccccc--cccccc
Confidence 224433333 3777788999999999999999999998 55554443 444443
No 52
>KOG1173|consensus
Probab=99.55 E-value=3.8e-13 Score=110.49 Aligned_cols=168 Identities=10% Similarity=0.092 Sum_probs=133.8
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+...|+.+..|+..|..|+..|++++|.++|.++..++ |. .+.+|...|..+...|..++|+..|.+|-++-|...
T Consensus 305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~---fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h 380 (611)
T KOG1173|consen 305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PT---FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH 380 (611)
T ss_pred HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-cc---ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc
Confidence 35678999999999999999999999999999999999 88 788888888888888888888888888888887777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH--------------------------------------
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR-------------------------------------- 123 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-------------------------------------- 123 (206)
.+.+.+|.-|..++++.-|.+.|..++.+.|.+|-+...++-
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 777777777777777777777777777777777655444443
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039 124 ---LFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLK 181 (206)
Q Consensus 124 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 181 (206)
++++++.... +..+|++++. .|.+..+.-..|-++..+|.++.|+..+=|
T Consensus 461 LGH~~Rkl~~~~e--------AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 461 LGHAYRKLNKYEE--------AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHHhhHHH--------HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3333333333 4567888888 789999999999999999999999887743
No 53
>KOG0550|consensus
Probab=99.55 E-value=2.1e-13 Score=108.49 Aligned_cols=129 Identities=30% Similarity=0.424 Sum_probs=116.3
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
.|...+.+...|+..++.|+|.+|.++|..+|.++ |+ ...++.+|.++|.+..++|+..+|+..|+.++.++|...++
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC-ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 45667889999999999999999999999999999 85 34578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN 135 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 135 (206)
+...|.|+..+++|++|+++|++++++..+ ......+.++...+++.+++.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd 374 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKD 374 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999877 777788887777777655544
No 54
>KOG2002|consensus
Probab=99.53 E-value=1.3e-13 Score=119.00 Aligned_cols=171 Identities=20% Similarity=0.251 Sum_probs=118.2
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--------------------------------------
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-------------------------------------- 43 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-------------------------------------- 43 (206)
++.+|++.-++...|.+.|..|+|-.|+.+|..++.++ |..
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~in-p~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a 235 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRIN-PACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA 235 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcC-cccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence 56789999999999999999999999999999999998 752
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Q psy1039 44 --------------------------------------------------------------------HERATCLKNRAA 55 (206)
Q Consensus 44 --------------------------------------------------------------------~~~~~~~~~la~ 55 (206)
...+..++.+|.
T Consensus 236 lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 236 LVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 223444666777
Q ss_pred HHHHccCHHHHHHHHHHHhhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HHHH
Q psy1039 56 VYLKQNQNDKVIEDCSKSLEIVPDD-PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT-KRMQ 133 (206)
Q Consensus 56 ~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~ 133 (206)
+|..+|+|++|..+|.++++.+|++ .-+++.+|..++..|+++.|+.+|++++...|++.+....+|.++...+ ....
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHH
Confidence 7777777777777777777666666 6666677777777777777777777777777777777777777666553 2222
Q ss_pred HHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 134 ENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.. .+..+..++.. .|.+.+.+..++..+.+..-+.. +..|
T Consensus 396 ~d-----~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~ 436 (1018)
T KOG2002|consen 396 RD-----KASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAY 436 (1018)
T ss_pred HH-----HHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHH
Confidence 22 35566666666 56667777776666655444333 4444
No 55
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.53 E-value=5e-13 Score=102.45 Aligned_cols=133 Identities=11% Similarity=0.125 Sum_probs=113.7
Q ss_pred ccchhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc--------cCHHHHHHHHH
Q psy1039 3 DNNMND---YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ--------NQNDKVIEDCS 71 (206)
Q Consensus 3 ~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~ 71 (206)
..+|++ ..+++.+|..++..|++++|+..|+++++.. |+.+.....++.+|.+++.. |++++|+..|+
T Consensus 61 ~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~ 139 (235)
T TIGR03302 61 SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQ 139 (235)
T ss_pred HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 344544 4688999999999999999999999999999 97444445799999999887 89999999999
Q ss_pred HHhhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHHHH
Q psy1039 72 KSLEIVPDDPKAL-----------------FRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPVLSRLFAIVTKR 131 (206)
Q Consensus 72 ~al~l~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~ 131 (206)
+++..+|++..++ +.+|..+...|++.+|+..+++++...|++ +.++..++.++..+++.
T Consensus 140 ~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 140 ELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 9999999986542 467889999999999999999999998775 47889999999999988
Q ss_pred HHHHH
Q psy1039 132 MQENE 136 (206)
Q Consensus 132 ~~~~~ 136 (206)
.++..
T Consensus 220 ~~A~~ 224 (235)
T TIGR03302 220 DLAQD 224 (235)
T ss_pred HHHHH
Confidence 87444
No 56
>KOG2002|consensus
Probab=99.53 E-value=6.8e-13 Score=114.71 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=145.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 85 (206)
+--++.+|.+|..|...|+|++|-.+|.+++..+ |+. ..-.++++|..|...|++..|+.+|+++++..|++.+...
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 3456789999999999999999999999999999 871 2667899999999999999999999999999999999999
Q ss_pred HHHHHHHHcC----CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHH
Q psy1039 86 RRCQAYEAIG----KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVT 161 (206)
Q Consensus 86 ~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (206)
-+|.+|...+ ..+.|.....+++...|.+..++..++.++.. ++.+... .....+...+..... +...+....
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL-~~~~~A~d~L~~~~~-~ip~E~LNN 457 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASL-DAYGNALDILESKGK-QIPPEVLNN 457 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHH-HHHHHHHHHHHHcCC-CCCHHHHHh
Confidence 9999999987 67889999999999999999999999998754 3333322 222233333333333 578888999
Q ss_pred HHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039 162 AVNNLVVLAREMSGAEMLLKSGVAKQINTLLK 193 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (206)
.|-.++..|.++.|...+ ++....+.
T Consensus 458 vaslhf~~g~~~~A~~~f------~~A~~~~~ 483 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHF------KSALGKLL 483 (1018)
T ss_pred HHHHHHHhcChHHHHHHH------HHHhhhhh
Confidence 999999999999999888 66655533
No 57
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.52 E-value=1e-12 Score=116.53 Aligned_cols=119 Identities=10% Similarity=0.131 Sum_probs=112.4
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
.+|..+.++..+|..+...|++++|+..|++++.+. |. +..++..+|.++...|++++|+..++++++.+|+++.
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~- 118 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQ---NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN- 118 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-
Confidence 467778889999999999999999999999999999 98 8889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
++.+|.++...|++++|+..++++++.+|+++.+...++.++..
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888877654
No 58
>KOG4648|consensus
Probab=99.52 E-value=6e-14 Score=109.54 Aligned_cols=114 Identities=36% Similarity=0.505 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la 88 (206)
...+.+.|+.||++|.|++||.||.+++.++ |. ++..+.++|.+|++..+|..|..+|+.|+.++....++|.++|
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~-P~---NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVY-PH---NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRM 172 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccC-CC---CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 3456889999999999999999999999999 98 8999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 126 (206)
.+-..+|...+|.+.++.+++++|++.+....++.+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 99999999999999999999999999888888777754
No 59
>KOG2003|consensus
Probab=99.52 E-value=2e-13 Score=110.07 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=153.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
|+..+.-++.++.+.|++.+..|++++|.+.|..++..+ .. -..+++++|.++..+|+.++|+.+|-+.-.+--.+
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd-as---c~ealfniglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND-AS---CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc-hH---HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 355667788899999999999999999999999999988 77 78899999999999999999999999887777789
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH------------------------
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE------------------------ 136 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~------------------------ 136 (206)
..+++.++.+|..+.+..+|++.+-++..+-|++|.++..++.++.+.++..++-.
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777665432
Q ss_pred --HHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 137 --QLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 137 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+.-++..++|.++.- .|....+..+.+.|+-..|.+..|+.-|
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 122456778888777 7888999999999999999998888766
No 60
>PRK15331 chaperone protein SicA; Provisional
Probab=99.52 E-value=5.7e-13 Score=94.60 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=106.1
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
...++.-+..|..|..++..|++++|...|+-.+..+ |. +...|..+|.|+..+++|++|+..|..+..++++++.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 4567888999999999999999999999999999999 98 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
+.|..|.|+..+|+...|..+|+.++. .|.+..+...-....
T Consensus 107 p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L 148 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYL 148 (165)
T ss_pred ccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHH
Confidence 999999999999999999999999998 466555444433333
No 61
>KOG1125|consensus
Probab=99.51 E-value=5.1e-14 Score=115.79 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
.+++....+|..|+..|+|++|++||+.|+... |+ +..+|..+|.++....+.++|+..|++|+++.|.++.++|+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PN---DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-Cc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 678899999999999999999999999999999 99 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
+|.+++.+|.|++|.++|-.+|.+.+.
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999998775
No 62
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=7.9e-13 Score=101.89 Aligned_cols=121 Identities=20% Similarity=0.204 Sum_probs=110.9
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhhCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVP 78 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~p 78 (206)
|..||++++.|..+|.+|+..|++..|..-|.+|+++. |+ ++..+..+|.+++.+. .-.++...+++++.++|
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GD---NPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 56799999999999999999999999999999999999 99 8999999999887775 37799999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 126 (206)
.++.+.+.+|..++..|+|.+|...++..+...|.+.+....+.....
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999988777666655443
No 63
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.51 E-value=1.4e-13 Score=85.36 Aligned_cols=67 Identities=30% Similarity=0.549 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhhCC
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVP 78 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p 78 (206)
++..|+.+|..++..|+|++|+.+|.++++++ |+ ++.+++++|.++..+| ++.+|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555666666666666666666666666666 65 5556666666666665 46666666666666555
No 64
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.50 E-value=9.1e-13 Score=85.02 Aligned_cols=99 Identities=36% Similarity=0.605 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~ 90 (206)
.++.+|..++..|++++|+..+.++++.. |. +...+..+|.++...+++++|+..|++++.+.|.+..+++.+|.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PD---NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-Cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 57889999999999999999999999999 88 678899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 91 YEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 91 ~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
+...|++++|...+.+++..+|+
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 78 YYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999988874
No 65
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.49 E-value=2.9e-12 Score=113.66 Aligned_cols=163 Identities=12% Similarity=0.091 Sum_probs=144.1
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
+|.++.-..-.-.++...|++++|+..|.++.... |. .+..+..+|.++...|++.+|+..|++++.++|.++.++
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~---~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 86 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QL---PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ 86 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34555566666778889999999999999999877 77 788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (206)
+.+|.++...|++++|+..+++++..+|+++. +..++.++...++... +...+++++. .|.+......++
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~--------Al~~l~~al~~~P~~~~~~~~la 157 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWD--------ELRAMTQALPRAPQTQQYPTEYV 157 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHH--------HHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999999 9999999988888877 5558888888 788888888899
Q ss_pred hhhhHhcccchhhHHHH
Q psy1039 164 NNLVVLAREMSGAEMLL 180 (206)
Q Consensus 164 ~~~~~~~~~~~a~~~~~ 180 (206)
.++...+..+.|+..+-
T Consensus 158 ~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 158 QALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHCCChHHHHHHHH
Confidence 98887777777765554
No 66
>PLN02789 farnesyltranstransferase
Probab=99.49 E-value=4.9e-12 Score=100.92 Aligned_cols=155 Identities=8% Similarity=-0.018 Sum_probs=137.4
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhhCCCCH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~ 81 (206)
.-.|+..+++...-.++...+.+++|+..+.++++++ |+ +..+|..+|.++..+| .+++++..++++++.+|.+.
T Consensus 31 ~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny 106 (320)
T PLN02789 31 AYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLN-PG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY 106 (320)
T ss_pred eeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-ch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch
Confidence 3456677777677777888999999999999999999 99 8999999999999999 68999999999999999999
Q ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039 82 KALFRRCQAYEAIGKF--EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK 158 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (206)
.+|+.++.++..+|.. +++...+.++++.+|+|..++...+.+...++...+ ...++.+++. ++.+...
T Consensus 107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e--------eL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 107 QIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED--------ELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHHCCCchhH
Confidence 9999999999999974 778999999999999999999999999999887766 4458888888 7888888
Q ss_pred hHHHHhhhhHh
Q psy1039 159 RVTAVNNLVVL 169 (206)
Q Consensus 159 ~~~~~~~~~~~ 169 (206)
+...+.++...
T Consensus 179 W~~R~~vl~~~ 189 (320)
T PLN02789 179 WNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHhc
Confidence 88888777665
No 67
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.48 E-value=2.2e-12 Score=97.32 Aligned_cols=128 Identities=14% Similarity=0.164 Sum_probs=120.6
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
.+|.+...+...|...+..|+|..|+..+.++.++. |+ +...|..+|.+|.+.|++++|...|.+++++.|..+.+
T Consensus 95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~---d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~ 170 (257)
T COG5010 95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PT---DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSI 170 (257)
T ss_pred cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CC---ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchh
Confidence 467788888889999999999999999999999999 98 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN 135 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 135 (206)
..++|..+.-.|+++.|...+.++....+.+..+..++..+....++...+.
T Consensus 171 ~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 171 ANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 9999999999999999999999999999999999999999988888776643
No 68
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.47 E-value=1.9e-13 Score=84.75 Aligned_cols=67 Identities=27% Similarity=0.505 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG-KFEEAYTDAKHIHRVEP 112 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 112 (206)
++..|..+|.+++..|+|++|+..|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 47789999999999999999999999999999999999999999999999 79999999999999998
No 69
>KOG0550|consensus
Probab=99.47 E-value=9.1e-13 Score=104.89 Aligned_cols=159 Identities=14% Similarity=0.204 Sum_probs=136.6
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc---------HHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---------HERATCLKNRAAVYLKQNQNDKVIEDCSK 72 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 72 (206)
+++++.+.++++..|.+++-.++.+.|+.+|+++++++ |++ +.....+...|.-.++.|.+.+|.+.|..
T Consensus 196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld-pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD-PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred HhcccchhHHHHhcccccccccchHHHHHHHhhhhccC-hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 67899999999999999999999999999999999999 973 22344578889999999999999999999
Q ss_pred HhhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 73 SLEIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY 148 (206)
Q Consensus 73 al~l~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (206)
+|.++|++ ...|.++|.+...+|+..+|+..+..++.++|....+...-+.++..+++++.+. +.|++
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV--------~d~~~ 346 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV--------EDYEK 346 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence 99999986 5679999999999999999999999999999999999999999999999998844 47777
Q ss_pred hcCCCCChhhhHHHHhhhhHh
Q psy1039 149 VFDTSAPMDKRVTAVNNLVVL 169 (206)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~ 169 (206)
+.....+..++..+.++-..+
T Consensus 347 a~q~~~s~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 347 AMQLEKDCEIRRTLREAQLAL 367 (486)
T ss_pred HHhhccccchHHHHHHHHHHH
Confidence 777554455555554444433
No 70
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.46 E-value=4.5e-12 Score=92.37 Aligned_cols=108 Identities=24% Similarity=0.257 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
..+..++..|..+...|++++|+..|.+++.+. |++...+.++.++|.++...|++++|+..|++++.++|.+..++..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 457888999999999999999999999999987 7633356689999999999999999999999999999999999999
Q ss_pred HHHHHH-------HcCCHH-------HHHHHHHHHHhcCCCCh
Q psy1039 87 RCQAYE-------AIGKFE-------EAYTDAKHIHRVEPTNK 115 (206)
Q Consensus 87 la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 115 (206)
+|.++. .+|+++ +|...+++++..+|++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999988 777766 56666667777887653
No 71
>KOG0624|consensus
Probab=99.46 E-value=2.1e-11 Score=95.49 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=137.4
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--------------------------------------
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-------------------------------------- 43 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-------------------------------------- 43 (206)
|.+.|+...+..++|.++++.|.+++|..-|..++..+ |+.
T Consensus 99 lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 99 LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 56778888888888888888888888888888888887 741
Q ss_pred --------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039 44 --------HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115 (206)
Q Consensus 44 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 115 (206)
+-.++++..++.||...|+...|+.+++.+-++..++++.+|..+.+++..|+.+.+....+.++.++|++.
T Consensus 178 i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 178 ITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 335677888999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hHHHHHHHHHH---HHHHHHHHHHHHH---------------------------------------HHHHHHHHHhcC-C
Q psy1039 116 AIQPVLSRLFA---IVTKRMQENEQLQ---------------------------------------NKVHNMFKYVFD-T 152 (206)
Q Consensus 116 ~~~~~l~~~~~---~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~-~ 152 (206)
.-......+.. .+...++...+.. ..+.+..+.+++ +
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC
Confidence 44333333322 2222222111000 123445566667 6
Q ss_pred CCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039 153 SAPMDKRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
|++.+.....+.+|+--..++.|+..|-
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7788888889999998888898888883
No 72
>KOG2076|consensus
Probab=99.45 E-value=1.3e-11 Score=106.23 Aligned_cols=107 Identities=17% Similarity=0.255 Sum_probs=65.7
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
|+++|.++.+|+.+|.+|-.+|+.++++..+-.|-.++ |. +...|..++.....+|.+.+|+-+|.+|++.+|.++
T Consensus 166 Ikqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~---d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~ 241 (895)
T KOG2076|consen 166 IKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PK---DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW 241 (895)
T ss_pred HHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch
Confidence 44556666666666666666666666666666666666 55 455666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 112 (206)
+..+.++.++.++|+...|...|.+++.+.|
T Consensus 242 ~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 242 ELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 6666666666666666666666666666665
No 73
>KOG2076|consensus
Probab=99.44 E-value=1.5e-11 Score=105.85 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
....+...|+.++..|++++|...+..+|+++ |. +..+|+.+|.+|..+|+..+|....--|-.++|.+++-|..+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-cc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 46778889999999999999999999999999 99 899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-CCh----hhhHH
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS-APM----DKRVT 161 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~----~~~~~ 161 (206)
+....++|++.+|.-+|.+|+..+|.+-........++..+|+...+.. -|.+++. .| .+. .....
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~--------~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME--------TFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH--------HHHHHHhhCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999998999999999898887443 6666666 33 332 22233
Q ss_pred HHhhhhHhcccchhhHHH
Q psy1039 162 AVNNLVVLAREMSGAEML 179 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~ 179 (206)
.+..+...+..+.|++.+
T Consensus 286 ~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 344455555545554444
No 74
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.44 E-value=6.6e-13 Score=85.58 Aligned_cols=84 Identities=29% Similarity=0.512 Sum_probs=74.4
Q ss_pred HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1039 21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100 (206)
Q Consensus 21 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A 100 (206)
..|+|+.|+.+|++++... |..+ +...++.+|.|++..|+|++|+..+++ ...+|.+....+.+|.|+..+|+|++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~-~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD-PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH-CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CCccHHHHHHHHHHHHHHC-CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3689999999999999999 8422 566788899999999999999999999 889999999999999999999999999
Q ss_pred HHHHHHH
Q psy1039 101 YTDAKHI 107 (206)
Q Consensus 101 ~~~~~~a 107 (206)
++.++++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999875
No 75
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.43 E-value=4.4e-12 Score=89.69 Aligned_cols=98 Identities=9% Similarity=-0.056 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
.....+.+|..++..|++++|...|+.++.++|.+...|+++|.++..+|+|.+|+..|.+++.++|+++.....++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..+++... +...|+.++.
T Consensus 114 L~lG~~~~--------A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCY--------AIKALKAVVR 131 (157)
T ss_pred HHcCCHHH--------HHHHHHHHHH
Confidence 99999888 4447777777
No 76
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.43 E-value=2e-11 Score=107.93 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=121.9
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
...|+.+...+..+...++.|+++.|+..|+++++.+ |+ ++.....+..++...|++++|+.++++++.-.|....
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~---~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~ 103 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PL---QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSR 103 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-cc---chhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHH
Confidence 3578889999999999999999999999999999999 98 5433337778888889999999999999933333444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (206)
....+|.++...|+|++|++.|+++++.+|+++.+...+..++...++..+ +...++++.. .|. ......
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e--------Al~~l~~l~~~dp~-~~~~l~ 174 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV--------VLKQATELAERDPT-VQNYMT 174 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH--------HHHHHHHhcccCcc-hHHHHH
Confidence 444447899999999999999999999999999988877676666655555 4556777666 344 222244
Q ss_pred HHhhhhHhcccchhhHHH
Q psy1039 162 AVNNLVVLAREMSGAEML 179 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~ 179 (206)
.+..+...++..+|+..+
T Consensus 175 layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 175 LSYLNRATDRNYDALQAS 192 (822)
T ss_pred HHHHHHhcchHHHHHHHH
Confidence 444443344444455555
No 77
>KOG1173|consensus
Probab=99.43 E-value=1.5e-12 Score=107.09 Aligned_cols=126 Identities=24% Similarity=0.314 Sum_probs=112.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~---p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 77 (206)
|+...|+++-.+.++|.+.+..+.|.+|+.+|+.++...+ ++...-...+.++|.++.+++++.+|+..|++++.+.
T Consensus 406 A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 406 ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 4677899999999999999999999999999999995431 2222245679999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039 78 PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 78 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 126 (206)
|.++.++-.+|.+|..+|+++.|+..|.+++.+.|++..+...|+.+..
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888888875543
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.42 E-value=1.1e-11 Score=96.25 Aligned_cols=115 Identities=11% Similarity=0.103 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHH
Q psy1039 8 DYNKLKESGNSA-FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKA 83 (206)
Q Consensus 8 ~~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~ 83 (206)
+....|..|..+ +..|+|++|+..|+..+... |+....+.+++.+|.+|+..|++++|+..|.+++...|++ +++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 357788888876 66899999999999999999 9866667899999999999999999999999999998874 789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 123 (206)
++.+|.++..+|++++|...|+++++..|++..+.....+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r 259 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR 259 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 9999999999999999999999999999998876555443
No 79
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.42 E-value=1.5e-10 Score=89.20 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKA 83 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~ 83 (206)
.++..++..|..++..|+|++|+..|+..+... |.++....+.+.+|.++++.+++.+|+..|++.++.+|++ +.+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 467889999999999999999999999999999 9876677778999999999999999999999999999977 567
Q ss_pred HHHHHHHHHHcCC------------------HHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHHHHHHHHHH---
Q psy1039 84 LFRRCQAYEAIGK------------------FEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVTKRMQENEQLQ--- 139 (206)
Q Consensus 84 ~~~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~--- 139 (206)
++.+|.++..++. ..+|+..|++.+...|+++ ++...+..+...+.+.+-......
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998766541 2568899999999999985 444445555554444433222111
Q ss_pred ---HHHHHHHHHhcC----CCCChhhhHHHHhhhhHhcccchhhH
Q psy1039 140 ---NKVHNMFKYVFD----TSAPMDKRVTAVNNLVVLAREMSGAE 177 (206)
Q Consensus 140 ---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~ 177 (206)
..+..-|+.+++ .+...+....+...+..+|..+.|-.
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 112333333343 34445666677777777777765544
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.42 E-value=1.2e-11 Score=107.50 Aligned_cols=130 Identities=8% Similarity=0.002 Sum_probs=123.5
Q ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039 41 EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (206)
Q Consensus 41 p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 120 (206)
|+ .+..++++|.+....|.+++|...+++++++.|++..++..+|.++.+.+++++|...+++++..+|++..++..
T Consensus 83 ~~---~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PH---TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cc---cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 66 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039 121 LSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLK 181 (206)
Q Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 181 (206)
++.+...+++.++ +..+|++++. .|++...+...+.++...|+.++|...+.+
T Consensus 160 ~a~~l~~~g~~~~--------A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 160 EAKSWDEIGQSEQ--------ADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHhcchHH--------HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999 5559999997 688899999999999999999988888875
No 81
>KOG0553|consensus
Probab=99.42 E-value=2.9e-12 Score=98.41 Aligned_cols=120 Identities=16% Similarity=0.254 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
.+.-+-.-|.-+++.++|.+|+..|.+||+++|.|+-.|.++|.+|.++|.|+.|++.+++++.+||....++..|+.++
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 35557778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccc
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREM 173 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (206)
..+++... +...|+++++ +|.+..++..+-.+-..++..+
T Consensus 160 ~~~gk~~~--------A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 160 LALGKYEE--------AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HccCcHHH--------HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999888 4458999999 7888777766655555554443
No 82
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.39 E-value=1.9e-12 Score=79.23 Aligned_cols=62 Identities=23% Similarity=0.375 Sum_probs=33.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 53 la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|...|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45555555555555555555555555555555555555555555555555555555555554
No 83
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.39 E-value=1e-10 Score=87.90 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH---HH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KA 83 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---~~ 83 (206)
.++..++..|..++..|+|.+|+..|+..+... |.++....+.+.+|.+++..|++.+|+..|++.++..|.++ .+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 457899999999999999999999999999999 98888899999999999999999999999999999999874 68
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhHHHH---HHHHHHHHHHHHHHHHHHH------HHHH
Q psy1039 84 LFRRCQAYEAIG-----------KFEEAYTDAKHIHRVEPTNKAIQPV---LSRLFAIVTKRMQENEQLQ------NKVH 143 (206)
Q Consensus 84 ~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~---l~~~~~~~~~~~~~~~~~~------~~~~ 143 (206)
++.+|.+++.+. ...+|...|+..+...|+++-+... +..+...+.+.+-...... ..+.
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 999999977654 3458999999999999999755444 4444444443333222111 1233
Q ss_pred HHHHHhcC-CCCC---hhhhHHHHhhhhHhcccc
Q psy1039 144 NMFKYVFD-TSAP---MDKRVTAVNNLVVLAREM 173 (206)
Q Consensus 144 ~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~ 173 (206)
..++.++. -|+. ......++..+..+|...
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 44444544 3433 344455666666666654
No 84
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.37 E-value=6.9e-11 Score=96.08 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=119.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 85 (206)
|.-..++|..+..++..|+++.|+..++..+... |+ ++..+...+.++...++.++|.+.+++++.++|+.+..++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~---N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PD---NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHH
Confidence 4556789999999999999999999999999999 99 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN 135 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 135 (206)
++|.++.+.|++.+|+..+++.+..+|+++..+..+++.+..+++..++.
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence 99999999999999999999999999999999999999999888766643
No 85
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.37 E-value=4e-11 Score=106.11 Aligned_cols=170 Identities=12% Similarity=0.057 Sum_probs=138.4
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
++.+|+++-....+..++...|++++|+.++++++... |. ....+..+|.++...|+|++|++.|+++++.+|+++
T Consensus 61 L~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~---~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~ 136 (822)
T PRK14574 61 SKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NI---SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP 136 (822)
T ss_pred HhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 56778876455588888889999999999999999443 43 444555558899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV 160 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (206)
.+++.++.++...++.++|+..++++...+|.+... ..+..+....++..+ +...++++++ .|.+.+...
T Consensus 137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~--------AL~~~ekll~~~P~n~e~~~ 207 (822)
T PRK14574 137 DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD--------ALQASSEAVRLAPTSEEVLK 207 (822)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH--------HHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999999985554 333333322232222 5568888888 799999999
Q ss_pred HHHhhhhHhcccchhhHHHHhcch
Q psy1039 161 TAVNNLVVLAREMSGAEMLLKSGV 184 (206)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~~~~~~ 184 (206)
.....+...|-.+-|.+.+.+.|.
T Consensus 208 ~~~~~l~~~~~~~~a~~l~~~~p~ 231 (822)
T PRK14574 208 NHLEILQRNRIVEPALRLAKENPN 231 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHhCcc
Confidence 999999999999888888887774
No 86
>KOG1840|consensus
Probab=99.36 E-value=6.4e-11 Score=99.03 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=132.5
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------cccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV--------TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 75 (206)
..|........+|..|...|+|+.|+..+.++++. . |. -......+|..|..+++|.+|+..|++|+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~h-l~---va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKH-LV---VASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccC-HH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 46777888888999999999999999999999998 3 43 555566799999999999999999999997
Q ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCChhHHHHHH---HHHHHHHHHHHHHHHHH
Q psy1039 76 I--------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE-----PTNKAIQPVLS---RLFAIVTKRMQENEQLQ 139 (206)
Q Consensus 76 l--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~---~~~~~~~~~~~~~~~~~ 139 (206)
+ +|....++.++|.+|...|+|++|..++++++.+- ..++.+...+. .++...++.+++.. +.
T Consensus 270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~-l~ 348 (508)
T KOG1840|consen 270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK-LL 348 (508)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH-HH
Confidence 6 45556789999999999999999999999999863 34455544444 44445555555444 23
Q ss_pred HHHHHHHHHhcC-C-CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 140 NKVHNMFKYVFD-T-SAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 140 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+.....+..+.. . +.-..+.-.++.++..+|++.+|.+.+
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY 390 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 334444444444 2 244667888999999999999998888
No 87
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.36 E-value=7.7e-12 Score=76.48 Aligned_cols=65 Identities=23% Similarity=0.446 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+.+|..++..|+|++|+..|+++++.. |+ +..+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD-PD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS-TT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 468999999999999999999999999 99 999999999999999999999999999999999875
No 88
>KOG3060|consensus
Probab=99.36 E-value=2.9e-10 Score=85.63 Aligned_cols=147 Identities=15% Similarity=0.173 Sum_probs=129.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 85 (206)
|.........|+.+-..|+|++|+++|+..++-+ |. +..++-..-.+.-.+|+.-+|++-.+.-++..|.+.++|.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt---~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~ 158 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PT---DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWH 158 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777888889999999999999999999999999 98 7777777666777889999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (206)
.++.+|...|+|.+|.-+++.++-+.|-++-....++.+....+....... ...+|.+++. .|.+...+..
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~-----arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL-----ARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHhChHhHHHHHH
Confidence 999999999999999999999999999999999999999988887665444 6779999988 5655554433
No 89
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.35 E-value=5e-11 Score=82.98 Aligned_cols=113 Identities=18% Similarity=0.258 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH---HH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KA 83 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---~~ 83 (206)
..+..++..|...+..|+|.+|++.|+...... |.++....+...+|.+|++.+++++|+..+++-++++|.++ .+
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 357789999999999999999999999999999 98777889999999999999999999999999999999875 57
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCChhHHHH
Q psy1039 84 LFRRCQAYEAIGK---------------FEEAYTDAKHIHRVEPTNKAIQPV 120 (206)
Q Consensus 84 ~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~ 120 (206)
++.+|.+++.... ...|...|++.+...|+++.+...
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999999999887 889999999999999998766544
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.35 E-value=6.9e-11 Score=95.81 Aligned_cols=161 Identities=12% Similarity=0.044 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh----hhCCCCHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL----EIVPDDPK 82 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~l~p~~~~ 82 (206)
+..+..+..|..++..|++++|+..++++++.. |+ +...+.. +..++..|.+..+...+.+++ ..+|....
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~---~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDY-PR---DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWY 115 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC---cHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHH
Confidence 345556666777777777777777777777777 76 4444443 444444443333333333332 44555666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC----hh
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAP----MD 157 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~ 157 (206)
++..+|.++...|++++|...++++++++|+++.+...++.++...++..+ +..++++.+. .|.+ ..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~e--------A~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKE--------GIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH--------HHHHHHhhhhccCCCcchhHH
Confidence 677788899999999999999999999999999999999999988888877 4447777776 3322 12
Q ss_pred hhHHHHhhhhHhcccchhhHHHH
Q psy1039 158 KRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
.+..++.++...|++++|...+-
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 34578999999999999988873
No 91
>KOG0551|consensus
Probab=99.33 E-value=1.2e-10 Score=90.57 Aligned_cols=108 Identities=27% Similarity=0.404 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
..++.+...|+.|++..+|..|+.+|.++|....+++..++.+|.|+|.|.+..|+|..|+.+|.+++.++|++.+++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 46788999999999999999999999999997646778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
-|.|++.+.++.+|...++..+.++.+.
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999999999888888887776665443
No 92
>KOG1129|consensus
Probab=99.33 E-value=1.6e-12 Score=101.09 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=115.0
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--C-
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--P- 78 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p- 78 (206)
++.+|.+.++....|..||-.++.+-|+.+|++.+++. -. +++++.|+|.|.+..++++-++..|.+++..- |
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~---speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~ 392 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQ---SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG 392 (478)
T ss_pred HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CC---ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc
Confidence 45666777777777777777777777777777777776 55 79999999999999999999999999998663 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
.-.++||++|.+....|++..|..+|+-++..+|+|.++..+++-+..+.++-.. +..+++.+.+
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~--------Arsll~~A~s 457 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG--------ARSLLNAAKS 457 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH--------HHHHHHHhhh
Confidence 3578999999999999999999999999999999999999999999888777666 3346666655
No 93
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.30 E-value=2.3e-10 Score=83.32 Aligned_cols=148 Identities=10% Similarity=0.081 Sum_probs=108.8
Q ss_pred HHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcC
Q psy1039 19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIG 95 (206)
Q Consensus 19 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g 95 (206)
++-.++|..+...+...++.. +. ......++++|.++...|++++|+..|++++.+.|+. +.+++++|.++...|
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~-~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTT-SG-EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccccccccchhhhhHhccCC-ch-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence 445566777777776665554 42 2257889999999999999999999999999997763 458999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhh
Q psy1039 96 KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT-------KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV 167 (206)
Q Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 167 (206)
++++|+..+++++.++|.+...+..++.++..++ +...+.. .......+|++++. .|.+. .....++.
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~-~~~~a~~~~~~a~~~~p~~~---~~~~~~~~ 162 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA-WFDQAAEYWKQAIALAPGNY---IEAQNWLK 162 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHH-HHHHHHHHHHHHHHhCcccH---HHHHHHHH
Confidence 9999999999999999999999999999988444 3333222 22234567777776 44333 33334444
Q ss_pred Hhccc
Q psy1039 168 VLARE 172 (206)
Q Consensus 168 ~~~~~ 172 (206)
..|+|
T Consensus 163 ~~~~~ 167 (168)
T CHL00033 163 ITGRF 167 (168)
T ss_pred HhcCC
Confidence 44443
No 94
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.30 E-value=8.3e-11 Score=95.57 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=101.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
+...|...+..|+|.+|+..|+++++++|++..+++.+|.++..+|++++|+..+++++.++|+++.++..++.++..++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHh
Q psy1039 130 KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVL 169 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 169 (206)
+... +...|++++. .|.+......+..+...+
T Consensus 85 ~~~e--------A~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQT--------AKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9888 5558888888 688877777777765554
No 95
>KOG1156|consensus
Probab=99.28 E-value=2.2e-10 Score=95.90 Aligned_cols=174 Identities=13% Similarity=0.104 Sum_probs=114.5
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
|+-.|.+++.+...|..+...|+-++|..+...+++.+ +. +..+|+-+|..+....+|++|+.+|+.|+.+.|+|.
T Consensus 34 L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~ 109 (700)
T KOG1156|consen 34 LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LK---SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL 109 (700)
T ss_pred HHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cc---cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH
Confidence 34456667777777777777777777777777777766 66 666777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC-----
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAP----- 155 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----- 155 (206)
..|.-++....++++++.....-.+.+++.|.+...+..++..+..+++...+.+ ..+.|.+... .+..
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~-----il~ef~~t~~~~~s~~~~e~ 184 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE-----ILEEFEKTQNTSPSKEDYEH 184 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhccCCCHHHHHH
Confidence 7777777777777777777777777777777777666666666666666655554 4445555553 2222
Q ss_pred hhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039 156 MDKRVTAVNNLVVLAREMSGAEMLLKSGV 184 (206)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 184 (206)
.+........+.+.|.+++|.+.+.++..
T Consensus 185 se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 185 SELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 22233344555666777777777765543
No 96
>KOG1840|consensus
Probab=99.27 E-value=5.3e-10 Score=93.60 Aligned_cols=174 Identities=16% Similarity=0.156 Sum_probs=136.7
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-- 77 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-- 77 (206)
.+|.-+..+.++|..|.+.|+|++|..++++|+++.. .+++.-+..+.+++..+..++++++|..++.+++++-
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 5788899999999999999999999999999999763 1234467789999999999999999999999998762
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 78 ------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP-----TN---KAIQPVLSRLFAIVTKRMQENEQLQNKVH 143 (206)
Q Consensus 78 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (206)
|.-+..+.++|.+|..+|+|++|.+.+++++.... .+ ......++..+...+...++.. ......
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~-l~~~~~ 436 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ-LFEEAK 436 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH-HHHHHH
Confidence 23467899999999999999999999999999642 22 3344555666655555554433 333455
Q ss_pred HHHHHhcC--CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 144 NMFKYVFD--TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 144 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.+. +... .|+.......++..|-.+|++++|.+-.
T Consensus 437 ~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 437 DIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 666 5555 3566777788999999999999887765
No 97
>KOG4162|consensus
Probab=99.27 E-value=6e-11 Score=100.78 Aligned_cols=123 Identities=16% Similarity=0.120 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
..|...|..+...++.++|..+..++-.++ |. .+..|+.+|.++...|++.+|.+.|..++.++|+++.....+|.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l---~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKID-PL---SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hh---hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 344555555555666666666666666666 65 56666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHH--HHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039 90 AYEAIGKFEEAYT--DAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 90 ~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
++...|+-.-|.. .+..+++++|.++++|..+|.+....|+..++..
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 6666666555555 6666666666666666666666666666655543
No 98
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.27 E-value=2.2e-10 Score=87.46 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALF 85 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~ 85 (206)
++-.|+.+..++..|+|..|...|..-++.. |++.+.+.++|-+|.+++.+|+|.+|...|..+.+-.|++ +++++
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 3458999999999999999999999999999 9988899999999999999999999999999999998875 67899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 123 (206)
.+|.+...+|+.++|...|+++++..|+.+.+...-..
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 99999999999999999999999999999877655433
No 99
>KOG1156|consensus
Probab=99.26 E-value=1.9e-10 Score=96.19 Aligned_cols=162 Identities=14% Similarity=0.051 Sum_probs=142.9
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
.....+|..+.-.+..++|...+...+..++-. |+ +++.+...|..+..+|+-++|....+.+++.++.+.-+|+.
T Consensus 5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv 80 (700)
T KOG1156|consen 5 PKENALFRRALKCYETKQYKKGLKLIKQILKKF-PE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHV 80 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-Cc---cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHH
Confidence 355688899999999999999999999999998 99 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhh
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNL 166 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (206)
+|.++....+|++|+++|..|+.++|+|..++..++.++..+++..-. +..-.......|.....|...+...
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~-------~~tr~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY-------LETRNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998886652 2223333333688888999999988
Q ss_pred hHhcccchhhHHH
Q psy1039 167 VVLAREMSGAEML 179 (206)
Q Consensus 167 ~~~~~~~~a~~~~ 179 (206)
...|.+..|...+
T Consensus 154 ~L~g~y~~A~~il 166 (700)
T KOG1156|consen 154 HLLGEYKMALEIL 166 (700)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887666554
No 100
>KOG0545|consensus
Probab=99.26 E-value=3.2e-10 Score=85.07 Aligned_cols=110 Identities=28% Similarity=0.396 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-------cC-------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA-------EE-------SHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-------p~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 73 (206)
....+...|+-+|+.|+|.+|...|..|+-.-. |. ......++.|.+.|++..|+|-++++.++..
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 456789999999999999999999999886431 32 1346678999999999999999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039 74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117 (206)
Q Consensus 74 l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 117 (206)
+..+|.|.++||.+|.++...-+.++|...|.++++++|.-.++
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999999999999999999999999999976544
No 101
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.26 E-value=5.1e-10 Score=92.73 Aligned_cols=170 Identities=12% Similarity=0.064 Sum_probs=123.6
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCc--------------------------------H---
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EES--------------------------------H--- 44 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~--------------------------------~--- 44 (206)
++.+|+++.++..+|..+...|+|++|++.+.+..+... |.. +
T Consensus 180 ~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~ 259 (409)
T TIGR00540 180 LEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR 259 (409)
T ss_pred HHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH
Confidence 356788888999999999999999988888887775521 110 0
Q ss_pred -HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh--hHHH
Q psy1039 45 -ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL--FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK--AIQP 119 (206)
Q Consensus 45 -~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~ 119 (206)
.+..++...|..+...|++++|...++++++..|++.... ..........++.+.+.+.++++++.+|+++ .+..
T Consensus 260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 1456677778888888888888888888888888876532 2223333445777888888888888888888 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 120 VLSRLFAIVTKRMQENEQLQNKVHNMFK--YVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 120 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.++.++...++..+ +..+|+ .+....++......++..+.+.|+.++|.+.+
T Consensus 340 sLg~l~~~~~~~~~--------A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 340 ALGQLLMKHGEFIE--------AADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred HHHHHHHHcccHHH--------HHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888777777 445888 45553334444558888888888888887776
No 102
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.25 E-value=4.6e-10 Score=76.75 Aligned_cols=99 Identities=20% Similarity=0.163 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC---CHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---DPKALFR 86 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~ 86 (206)
.++|+.|..+-..|+.++|+.+|++++... .+......++..+|.++..+|++++|+..+++++.-.|+ +......
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 578999999999999999999999999987 665556789999999999999999999999999999898 7788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~ 109 (206)
++.++...|++++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999887765
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=5e-10 Score=90.76 Aligned_cols=166 Identities=10% Similarity=-0.013 Sum_probs=134.7
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
.+|+.+.++..+|..+...|+++.+...+.++.... |.........+..|.++...|++++|...++++++.+|++..+
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 379999999999999999999999999999999888 6422256667789999999999999999999999999999988
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIH----RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK 158 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (206)
+.. +..+...|++..+.....+++ ..+|........++.++...++..+ +...+++++. .|.+...
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~--------A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR--------AEEAARRALELNPDDAWA 150 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhhCCCCcHH
Confidence 775 666666665544444444444 4556666677777788888777777 5558888888 7888888
Q ss_pred hHHHHhhhhHhcccchhhHHH
Q psy1039 159 RVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~ 179 (206)
...++.++.+.|++++|...+
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 899999999999999999887
No 104
>KOG4162|consensus
Probab=99.22 E-value=4.1e-10 Score=95.82 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=103.3
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHH--HHHHHhhhCCCCH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE--DCSKSLEIVPDDP 81 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~l~p~~~ 81 (206)
..|..+..|+..|..+...|++.+|...|..|+.++ |+ +..+...+|.++...|+-.-|.. ....+++++|.++
T Consensus 679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~---hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PD---HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CC---CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 457778899999999999999999999999999999 99 89999999999999998777777 9999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 117 (206)
++|+.+|.++..+|+.++|..+|..++++++.+|..
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 999999999999999999999999999999988753
No 105
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.22 E-value=6.4e-10 Score=71.38 Aligned_cols=95 Identities=25% Similarity=0.395 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 128 (206)
.++.+|.++...|++++|+..++++++..|.+..+++.+|.++...|++++|...+++++...|.++.+...++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 129 TKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
++... +..++.++..
T Consensus 82 ~~~~~--------a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEE--------ALEAYEKALE 96 (100)
T ss_pred HhHHH--------HHHHHHHHHc
Confidence 87666 3346666654
No 106
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.22 E-value=7.5e-10 Score=80.99 Aligned_cols=108 Identities=11% Similarity=0.177 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039 44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (206)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 120 (206)
+..+..++.+|..+...|++++|+.+|++++.+.|+. ..+++.+|.++...|++++|...+++++...|++......
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3477889999999999999999999999999987764 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcC
Q psy1039 121 LSRLFAIVTKRMQENEQL------QNKVHNMFKYVFD 151 (206)
Q Consensus 121 l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 151 (206)
++.++...++...+.+.. ...+..++++++.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 998887766543322222 2335566666666
No 107
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.21 E-value=6.8e-11 Score=72.86 Aligned_cols=66 Identities=32% Similarity=0.468 Sum_probs=51.4
Q ss_pred HHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039 58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (206)
Q Consensus 58 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 123 (206)
+..|+|++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 467788888888888888888888888888888888888888888888888888887766665544
No 108
>KOG1128|consensus
Probab=99.21 E-value=5.9e-10 Score=94.46 Aligned_cols=126 Identities=16% Similarity=0.070 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
++.+...+|......++|+++...++..++++|-....||.+|.+..+++++..|.++|.+++.++|++..+++++...+
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 34444555555667799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
..+++..++-. .++.++. .-..-.++...+-.....|.+++|++.+
T Consensus 564 i~~~~k~ra~~--------~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 564 IRLKKKKRAFR--------KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHhhhHHHHH--------HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence 99998888444 7888888 4566788889999999999998888877
No 109
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.7e-09 Score=84.17 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=57.5
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD 79 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 79 (206)
+..+|...+....+|+.|...|..+.||.+-+..++- |+- .....+...+|.-|+..|-++.|...|........-
T Consensus 62 l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef 139 (389)
T COG2956 62 LQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF 139 (389)
T ss_pred HhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh
Confidence 4456777777777777777777777777776665553 431 112233444555555555555555555444433322
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
-..+...+-.+|....+|++|+..-++...+.|+
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 3344444444444444444444444444444443
No 110
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.21 E-value=6.7e-10 Score=75.63 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPV 120 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 120 (206)
+..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|...|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3568999999999999999999999999999887 5789999999999999999999999999999986 567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChh
Q psy1039 121 LSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMD 157 (206)
Q Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (206)
++.++...++... +..++++++. .|.+..
T Consensus 82 ~~~~~~~~~~~~~--------A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEK--------AKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHH--------HHHHHHHHHHHCcCChh
Confidence 8888887777666 4457777777 455443
No 111
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.20 E-value=2.5e-09 Score=75.99 Aligned_cols=132 Identities=18% Similarity=0.156 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKAL 84 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~ 84 (206)
.+...|......+..+++..+...++..+.-. |+.+....+.+.+|.+++..|++++|...|+.++...|+. ..+.
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 45566777777778999999999999999988 8866668888999999999999999999999999887665 4578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV 149 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (206)
+++|.++...|++++|...++. +.-.+-.+.+....|.++...++... +...|+++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~--------A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDE--------ARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHH--------HHHHHHHh
Confidence 8899999999999999999966 34455567788889999988888887 44466655
No 112
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=3.7e-09 Score=82.29 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC--cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE--SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
..++..+-.+|....+|++||+.-++...+. |. +..-+..|..+|..+....+++.|...+.+|++-+|....+-..
T Consensus 141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~ 219 (389)
T COG2956 141 EGALQQLLNIYQATREWEKAIDVAERLVKLG-GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII 219 (389)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence 3455556666666666666666666666665 43 23345566677777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhh
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTN-KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNN 165 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (206)
+|.+....|+|+.|++.++++++.+|+. +.+...+..++..+++... ...+.+++.+.-.....-..++..
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~--------~~~fL~~~~~~~~g~~~~l~l~~l 291 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE--------GLNFLRRAMETNTGADAELMLADL 291 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH--------HHHHHHHHHHccCCccHHHHHHHH
Confidence 7777777777777777777777777765 5666666677776666555 334666666643444444444444
Q ss_pred hhHhcccchhh----HHHHhcchHHHHHHHh
Q psy1039 166 LVVLAREMSGA----EMLLKSGVAKQINTLL 192 (206)
Q Consensus 166 ~~~~~~~~~a~----~~~~~~~~~~~~~~~~ 192 (206)
.......+.|. +.+-+.|.+..+-.++
T Consensus 292 ie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~ 322 (389)
T COG2956 292 IELQEGIDAAQAYLTRQLRRKPTMRGFHRLM 322 (389)
T ss_pred HHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence 44444333332 2333555544444443
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.20 E-value=1.7e-09 Score=95.65 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=116.0
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH-
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP- 81 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~- 81 (206)
.-+|.+..++..+...+...|++++|+..++.+++.. |+ ....|+.+|..+++.+++.++... +++.+.+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~---~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~ 98 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KK---SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK 98 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-Cc---ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc
Confidence 4578999999999999999999999999999999999 99 899999999999999988877766 6666666665
Q ss_pred ------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 82 ------------------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQN 140 (206)
Q Consensus 82 ------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 140 (206)
.+++.+|.||-.+|++++|...|+++++++|+|+.+.++++-.+... +..++.....+
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998877 66665554443
No 114
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.19 E-value=8.7e-10 Score=78.37 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
...+...+|..++..|++++|+..|+.++... |+......+...+|.+++..|++++|+..++. +.-.+-.+.++..+
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~ 124 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELL 124 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHH
Confidence 37788899999999999999999999999988 87666677899999999999999999999966 34444556778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIH 108 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al 108 (206)
|.++...|++++|+..|++++
T Consensus 125 Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 125 GDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999999875
No 115
>KOG0376|consensus
Probab=99.19 E-value=4.7e-11 Score=97.02 Aligned_cols=118 Identities=28% Similarity=0.429 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la 88 (206)
+..+...+..++..+.|+.|+..|.++|+++ |+ .+.++.+++.++.+.++|..|+.++.+|++++|...++|+++|
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ld-pn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg 79 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELD-PN---CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRG 79 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcC-Cc---ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeecc
Confidence 4566788999999999999999999999999 99 8999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (206)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 130 (206)
.+...++.+.+|...|++...+.|+++.+...+.++.....+
T Consensus 80 ~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 80 TAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888776555
No 116
>KOG1129|consensus
Probab=99.18 E-value=2.1e-10 Score=89.48 Aligned_cols=157 Identities=12% Similarity=-0.004 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
+.+..++.+|.+..+...|+..|...++.. |. +...+...+.++..++++++|.++|+.+++++|.|.++.-..|.
T Consensus 257 dTfllLskvY~ridQP~~AL~~~~~gld~f-P~---~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~ 332 (478)
T KOG1129|consen 257 DTFLLLSKVYQRIDQPERALLVIGEGLDSF-PF---DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAV 332 (478)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cc---hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeee
Confidence 344444444444444444444444444444 44 55555556666666666666666666666666666555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCChhhhHHHHhh
Q psy1039 90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD----TSAPMDKRVTAVNN 165 (206)
Q Consensus 90 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 165 (206)
.|+.-++.+-|..+|++.+...-.+++...+++.+...-++..- +...|.+++. +....+.|..++.+
T Consensus 333 ~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~--------~L~sf~RAlstat~~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 333 GYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDL--------VLPSFQRALSTATQPGQAADVWYNLGFV 404 (478)
T ss_pred ccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhh--------hHHHHHHHHhhccCcchhhhhhhcccee
Confidence 55555555555555555555555555555555555554444333 2234444433 22335555555555
Q ss_pred hhHhcccchhhHH
Q psy1039 166 LVVLAREMSGAEM 178 (206)
Q Consensus 166 ~~~~~~~~~a~~~ 178 (206)
....|++--|..+
T Consensus 405 aV~iGD~nlA~rc 417 (478)
T KOG1129|consen 405 AVTIGDFNLAKRC 417 (478)
T ss_pred EEeccchHHHHHH
Confidence 5555555444433
No 117
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.18 E-value=9.9e-09 Score=84.81 Aligned_cols=155 Identities=15% Similarity=0.212 Sum_probs=71.5
Q ss_pred HHcCCHHHHHHHHHHHHhccccCcHHHHH-HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1039 20 FKQGDYETALDFYTKALKVTAEESHERAT-CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE 98 (206)
Q Consensus 20 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~ 98 (206)
...|+++.|..+|.++.+.. |+ ... .....+..+...|++++|+..+++..+.+|+++.++..++.+|...|+|+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~-~~---~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA-DN---DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC-Cc---chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 44444444444444444444 43 111 11122444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhh
Q psy1039 99 EAYTDAKHIHRVEPTNKAIQPVLS-RLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGA 176 (206)
Q Consensus 99 ~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 176 (206)
+|.+.+.+..+..+.++.....+. ..+..+-....... -......+.+.... .+.+.......+..+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~-~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ-GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 444444444444333322211111 11000000000000 00112333333333 4667888899999999999998888
Q ss_pred HHH
Q psy1039 177 EML 179 (206)
Q Consensus 177 ~~~ 179 (206)
+.+
T Consensus 284 ~~L 286 (398)
T PRK10747 284 QII 286 (398)
T ss_pred HHH
Confidence 877
No 118
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.18 E-value=4.8e-09 Score=86.96 Aligned_cols=166 Identities=13% Similarity=0.107 Sum_probs=84.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHH-HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERA-TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
|+....+...|..+...|+++.|..++.++.+.. |+ .. .+....+..+...|+++.|...+++.++..|+++.++
T Consensus 115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~---~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l 190 (409)
T TIGR00540 115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GN---DNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVL 190 (409)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3334444455555555555555555555555555 44 21 2233345555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC----CChhhh
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS----APMDKR 159 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~ 159 (206)
..++.++...|+|++|.+.+.+..+..+.++.....+.... ..+...... .++ ....+..+.. .| .+....
T Consensus 191 ~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a-~~~~l~~~~--~~~-~~~~L~~~~~~~p~~~~~~~~l~ 266 (409)
T TIGR00540 191 KLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA-EIGLLDEAM--ADE-GIDGLLNWWKNQPRHRRHNIALK 266 (409)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHHHHHHHH--Hhc-CHHHHHHHHHHCCHHHhCCHHHH
Confidence 55555555555555555555555554333322221111100 000000000 000 0012222222 23 588899
Q ss_pred HHHHhhhhHhcccchhhHHH
Q psy1039 160 VTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~ 179 (206)
...+..+...|++++|.+.+
T Consensus 267 ~~~a~~l~~~g~~~~A~~~l 286 (409)
T TIGR00540 267 IALAEHLIDCDDHDSAQEII 286 (409)
T ss_pred HHHHHHHHHCCChHHHHHHH
Confidence 99999999999998888777
No 119
>PRK11906 transcriptional regulator; Provisional
Probab=99.18 E-value=2.9e-09 Score=87.01 Aligned_cols=162 Identities=9% Similarity=-0.039 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHH---hccccCcHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHhh
Q psy1039 11 KLKESGNSAFKQGDY---ETALDFYTKAL---KVTAEESHERATCLKNRAAVYLKQ---------NQNDKVIEDCSKSLE 75 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~---~~A~~~~~~al---~~~~p~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~ 75 (206)
..+.+|...+..+.. +.|+.+|.+++ .++ |. .+.+|..++.|++.. ..-.+|.+..++|++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld-p~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ-TL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC-cc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 558889888877754 46889999999 899 98 899999999999776 235688999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Q psy1039 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSA 154 (206)
Q Consensus 76 l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (206)
++|.++.++..+|.++...++++.|...|++++.++|+...++...+.+....++... +..+.++++. .|.
T Consensus 333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~--------a~~~i~~alrLsP~ 404 (458)
T PRK11906 333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE--------ARICIDKSLQLEPR 404 (458)
T ss_pred cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH--------HHHHHHHHhccCch
Confidence 9999999999999999999999999999999999999999999999999988888777 4458888887 665
Q ss_pred ChhhhHHHHhh-hhHhcccchhhHHHHhcch
Q psy1039 155 PMDKRVTAVNN-LVVLAREMSGAEMLLKSGV 184 (206)
Q Consensus 155 ~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~ 184 (206)
.......+... ..--...+.|++-|+|..+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 405 RRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred hhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 55554444443 3344556889999988655
No 120
>KOG4642|consensus
Probab=99.18 E-value=7.5e-11 Score=87.96 Aligned_cols=114 Identities=26% Similarity=0.335 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
.+.-+..-|+.++....|..|+.+|.++|-++ |. .+..|.+++.|++++.+|+.+..++++++++.|+..+++|.+
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~n-P~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~fl 84 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICIN-PT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFL 84 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcC-CC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHH
Confidence 45667788999999999999999999999999 99 889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-----ChhHHHHHHHHH
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPT-----NKAIQPVLSRLF 125 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~ 125 (206)
|.+......|++|+..++++..+.-. -.++...|..+.
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 99999999999999999999665322 235555554443
No 121
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.18 E-value=1.9e-10 Score=71.83 Aligned_cols=65 Identities=26% Similarity=0.559 Sum_probs=37.2
Q ss_pred HHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy1039 55 AVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119 (206)
Q Consensus 55 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 119 (206)
..|...++|++|+..+++++.++|+++..++.+|.++..+|++.+|...++++++..|+++.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555554433
No 122
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.16 E-value=1.6e-09 Score=89.46 Aligned_cols=119 Identities=10% Similarity=0.022 Sum_probs=59.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
....|..+...|+.++|...++++++ .|.++......+.+ ..++.+++.+.+++.++.+|+++.....++.+....+
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG 342 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 33344444444444455444444444 22233222222222 2244555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 130 KRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+..+ +..+|++++...++......++.++-..|+.++|...+
T Consensus 343 ~~~~--------A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 343 EWQE--------ASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred CHHH--------HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555 33466666664333444456666666666666666655
No 123
>KOG1174|consensus
Probab=99.15 E-value=1e-09 Score=87.90 Aligned_cols=167 Identities=10% Similarity=0.043 Sum_probs=103.1
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
|..+|++..++...|..+...|+.++|+-.|+.|..+. |. ...+|.++-.||...|++.+|.-..+.++..-|.+.
T Consensus 327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~---rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA 402 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PY---RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA 402 (564)
T ss_pred hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hh---hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence 34455555555555555555555555555555555555 54 455555555555555555555555555555555555
Q ss_pred HHHHHHH-HHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhh
Q psy1039 82 KALFRRC-QAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKR 159 (206)
Q Consensus 82 ~~~~~la-~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (206)
.++-.+| .++...- --++|.+.+++++.++|....+...+++++..-+..+. ...+.++.+..-.|....
T Consensus 403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D--------~i~LLe~~L~~~~D~~LH 474 (564)
T KOG1174|consen 403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKD--------IIKLLEKHLIIFPDVNLH 474 (564)
T ss_pred hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccch--------HHHHHHHHHhhccccHHH
Confidence 5544443 2222222 22557777778888888888888888887777776666 334666666655666677
Q ss_pred HHHHhhhhHhcccchhhHHHH
Q psy1039 160 VTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~ 180 (206)
..++..+.-.+.+.+|++.|.
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 778888888888888877765
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=1.4e-09 Score=88.57 Aligned_cols=122 Identities=20% Similarity=0.153 Sum_probs=110.4
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
++..|+|+..+-..|.+++..|+..+|++.+++++.++ |+ ...++.++|.++++.|++.+|+..+++.+.-+|+++
T Consensus 333 ~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~---~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 333 IAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PN---SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC---ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence 45689999999999999999999999999999999999 99 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
..|..+|.+|..+|+-.+|...+-....+..+-..+...+......
T Consensus 409 ~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 409 NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988888888777766666655555443
No 125
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.14 E-value=4.2e-10 Score=70.25 Aligned_cols=70 Identities=29% Similarity=0.466 Sum_probs=65.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
..+++..++|++|+.++++++.++ |+ ++..+..+|.+++.+|++.+|+..|+++++..|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PD---DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 568899999999999999999999 99 99999999999999999999999999999999999887765553
No 126
>KOG3060|consensus
Probab=99.13 E-value=3.3e-08 Score=74.68 Aligned_cols=156 Identities=12% Similarity=-0.019 Sum_probs=139.7
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
.++--..+-....+.+..|+...|..++++.-... |. +...-...|..+...|++.+|+++|+..++-+|.|.-.+
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~---S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~ 123 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PG---SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIR 123 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CC---ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHH
Confidence 34455566677788889999999999999999999 98 788888899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (206)
-++-.+...+|+--+|++.+...++..|.+++++..++.++...++..+ +.-++..++- .|-+.....+++
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~k--------A~fClEE~ll~~P~n~l~f~rla 195 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEK--------AAFCLEELLLIQPFNPLYFQRLA 195 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHH--------HHHHHHHHHHcCCCcHHHHHHHH
Confidence 9998899999999999999999999999999999999999999999988 4446766666 799999999999
Q ss_pred hhhhHhccc
Q psy1039 164 NNLVVLARE 172 (206)
Q Consensus 164 ~~~~~~~~~ 172 (206)
..+..+|.-
T Consensus 196 e~~Yt~gg~ 204 (289)
T KOG3060|consen 196 EVLYTQGGA 204 (289)
T ss_pred HHHHHHhhH
Confidence 999988863
No 127
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.10 E-value=3e-10 Score=69.94 Aligned_cols=67 Identities=33% Similarity=0.406 Sum_probs=61.3
Q ss_pred HHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 19 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
++..|+|++|+..|++++..+ |+ +..+++.+|.|++..|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 467899999999999999999 99 89999999999999999999999999999999999887776664
No 128
>KOG0495|consensus
Probab=99.10 E-value=4.7e-09 Score=88.40 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=134.0
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+.-+|++.+.|...-...+...+++.|..+|.++-... |+ ...|..-+.....++..++|+..++++++..|++.
T Consensus 611 f~~~pnseeiwlaavKle~en~e~eraR~llakar~~s-gT----eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~ 685 (913)
T KOG0495|consen 611 FEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS-GT----ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH 685 (913)
T ss_pred HHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC-Cc----chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH
Confidence 34577788888888888888888888888888888877 74 78888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV 160 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (206)
+.|..+|.++.++++.+.|...|...+...|.++..+..++.+....++..+ +...+.++.- .|.+...+.
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r--------AR~ildrarlkNPk~~~lwl 757 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR--------ARSILDRARLKNPKNALLWL 757 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh--------HHHHHHHHHhcCCCcchhHH
Confidence 9999999999999999999999999999999999999999988877766555 4457777766 688888887
Q ss_pred HHHhhhhHhcccc
Q psy1039 161 TAVNNLVVLAREM 173 (206)
Q Consensus 161 ~~~~~~~~~~~~~ 173 (206)
...+.-+..|..+
T Consensus 758 e~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 758 ESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHcCCHH
Confidence 7777766666554
No 129
>PRK15331 chaperone protein SicA; Provisional
Probab=99.10 E-value=3.8e-09 Score=75.21 Aligned_cols=109 Identities=11% Similarity=-0.007 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
.....+..|.-++..|++++|...|+-....+|.+++.++.+|.|+..+++|++|+..|..+..+++++|......+.++
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHH
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTA 162 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (206)
..+++... +...|..+++.|.+...+.+.
T Consensus 116 l~l~~~~~--------A~~~f~~a~~~~~~~~l~~~A 144 (165)
T PRK15331 116 LLMRKAAK--------ARQCFELVNERTEDESLRAKA 144 (165)
T ss_pred HHhCCHHH--------HHHHHHHHHhCcchHHHHHHH
Confidence 99999888 555888888866655544443
No 130
>KOG1128|consensus
Probab=99.09 E-value=6.2e-10 Score=94.34 Aligned_cols=125 Identities=11% Similarity=0.098 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
++.+.+..|...+++++|+++..+++..++++ |- ....|+++|.|..+++++..|..+|.+++.++|++..+|.++
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-pl---q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNl 559 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEIN-PL---QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNL 559 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcC-cc---chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhh
Confidence 34455666777788899999999999999999 97 889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
+.+|...|+-.+|...++.+++-+-++..++.+...+....+..+++..
T Consensus 560 s~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 560 STAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred hHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence 9999999999999999999999999999999999888888888887554
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.09 E-value=3.1e-09 Score=94.00 Aligned_cols=174 Identities=15% Similarity=0.123 Sum_probs=125.5
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc----------------HHHHHHHHHHHHHHHHccCHHH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----------------HERATCLKNRAAVYLKQNQNDK 65 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~----------------~~~~~~~~~la~~~~~~~~~~~ 65 (206)
+..+|+....++..|..+++.+++.++... .++... +.. ..+..+++.+|.||-++|++++
T Consensus 58 l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~k 134 (906)
T PRK14720 58 LKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKK 134 (906)
T ss_pred HHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHH
Confidence 567899999999999999999999888777 666665 441 1133789999999999999999
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------CCChhHHHH-HHHH
Q psy1039 66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE--------------------PTNKAIQPV-LSRL 124 (206)
Q Consensus 66 A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------p~~~~~~~~-l~~~ 124 (206)
|...++++++++|+|+.++.++|..|... +.++|..++.+++... |++.+.... +..+
T Consensus 135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki 213 (906)
T PRK14720 135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKV 213 (906)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHH
Confidence 99999999999999999999999999999 9999999988877753 332222111 1111
Q ss_pred HHHHH------------HHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039 125 FAIVT------------KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 125 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
....+ +.-...... .....+++.+++ +|.+.-.+..++.||...-....-++.++
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~-~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l 281 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDW-DEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYL 281 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhh-hHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHH
Confidence 11111 000000000 125678899999 78999999999999985544444444443
No 132
>KOG1174|consensus
Probab=99.08 E-value=3.8e-09 Score=84.72 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=83.3
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
-|++...+-.+|.+++..|++.+|+..|+++..++ |. +....-..|..+-..|+++.-...-...+.........|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py---~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PD---NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hh---hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence 46778888899999999999999999999999988 86 333333334444344444433333333333333333334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (206)
+--|..++..++|..|...-++++..+|.+.++....|.+...+++-.++.. .|+.+.. .|.+.+...-+.
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I--------aFR~Aq~Lap~rL~~Y~GL~ 375 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI--------AFRTAQMLAPYRLEIYRGLF 375 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH--------HHHHHHhcchhhHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444433222 4444444 344444444444
Q ss_pred hhhhHhcccc
Q psy1039 164 NNLVVLAREM 173 (206)
Q Consensus 164 ~~~~~~~~~~ 173 (206)
.+|+-.+++.
T Consensus 376 hsYLA~~~~k 385 (564)
T KOG1174|consen 376 HSYLAQKRFK 385 (564)
T ss_pred HHHHhhchHH
Confidence 4444444443
No 133
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.08 E-value=1.9e-08 Score=84.96 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=43.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
++.+|..|-..|++++|+++.++||...|..++.|+.+|.++...|++.+|.+.++.+-.+|+.+..+.........+.+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 34455555555555555555555555555555555555555555555555555555555555555555444444444444
Q ss_pred HHHH
Q psy1039 130 KRMQ 133 (206)
Q Consensus 130 ~~~~ 133 (206)
+.+.
T Consensus 277 ~~e~ 280 (517)
T PF12569_consen 277 RIEE 280 (517)
T ss_pred CHHH
Confidence 4444
No 134
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.08 E-value=8.8e-10 Score=69.78 Aligned_cols=72 Identities=25% Similarity=0.432 Sum_probs=54.4
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--c-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--E-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 76 (206)
+|+.+..+.++|.++...|+|++|+.+|++++++.. + +.+..+.++.++|.++..+|++++|++++++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 477788888888888888888888888888887631 2 22335777888888888888888888888888765
No 135
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.07 E-value=3.4e-08 Score=83.54 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQ 139 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 139 (206)
+++.+|..|-..|++++|..+++++|...|..++.....++++...|+...+...++
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~ 252 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMD 252 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 367778888888888888888888888888888888888888888777766665444
No 136
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.4e-08 Score=78.53 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCC---HHHHH
Q psy1039 25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK---FEEAY 101 (206)
Q Consensus 25 ~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~---~~~A~ 101 (206)
.+..+.-.+.-+..+ |+ ++.-|..+|.+|+.+|++..|...|.+++++.|++++.+..+|.++....+ -.++.
T Consensus 138 ~~~l~a~Le~~L~~n-P~---d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 138 MEALIARLETHLQQN-PG---DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHHhC-CC---CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 556666778888888 88 899999999999999999999999999999999999999999988777653 46788
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy1039 102 TDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM 156 (206)
Q Consensus 102 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (206)
..+++++.+||.|..+...++......+++.+ +...++.+++ .|.+.
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~--------A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAE--------AAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHH--------HHHHHHHHHhcCCCCC
Confidence 99999999999999999999999888888888 4447777777 34443
No 137
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.05 E-value=1.6e-08 Score=85.77 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHhhh
Q psy1039 8 DYNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--------QNDKVIEDCSKSLEI 76 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~l 76 (206)
.+..++..|..++..++ +..|+.+|+++++++ |+ .+.++..++.++.... +...+.....+++.+
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 56678889999987766 789999999999999 99 8888888888886653 345666666776664
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Q psy1039 77 --VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS 153 (206)
Q Consensus 77 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (206)
+|.++.++..+|..+...|++++|...+++++.++| +..++..++.++...|+..+ +...|++++. .|
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~e--------A~~~~~~A~~L~P 484 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRL--------AADAYSTAFNLRP 484 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhcCC
Confidence 777888899999999999999999999999999999 47889999999999998888 4558888887 55
Q ss_pred CCh
Q psy1039 154 APM 156 (206)
Q Consensus 154 ~~~ 156 (206)
...
T Consensus 485 ~~p 487 (517)
T PRK10153 485 GEN 487 (517)
T ss_pred CCc
Confidence 544
No 138
>KOG1127|consensus
Probab=99.03 E-value=1e-08 Score=89.66 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=108.8
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc---------------------------------HHHHH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---------------------------------HERAT 48 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~---------------------------------~~~~~ 48 (206)
+..+|.-+-+|..+|..|...-+...|..+|.+|-+++ +.. .....
T Consensus 485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~ 563 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKE 563 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHh
Confidence 44566666677777777766666666777777777766 541 12344
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 128 (206)
.|..+|..|...++++.|+..|+-+++.+|.+..+|..+|.+|...|++..|.+.|.++..++|.+.....-.+.+...+
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999988888888887777
Q ss_pred HHHHHHHH
Q psy1039 129 TKRMQENE 136 (206)
Q Consensus 129 ~~~~~~~~ 136 (206)
+++..+..
T Consensus 644 GkYkeald 651 (1238)
T KOG1127|consen 644 GKYKEALD 651 (1238)
T ss_pred hhHHHHHH
Confidence 77776443
No 139
>KOG4555|consensus
Probab=99.03 E-value=3.6e-08 Score=67.35 Aligned_cols=101 Identities=25% Similarity=0.398 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH----HHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP----KAL 84 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~----~~~ 84 (206)
+..+-..|..+...|+.+.|++.|.+++.+. |. .+++|.+++.++.-+|+.++|+.++++++++..+-. .++
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~-P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~ 118 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLA-PE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF 118 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhc-cc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence 4566778999999999999999999999999 99 899999999999999999999999999999976543 468
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
..+|.+|..+|+-+.|...|+.+-++...
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 89999999999999999999999887644
No 140
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.03 E-value=6e-09 Score=85.10 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=65.0
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHH---HHHHHHHHHHHHccCHHHHHHHHHHHhhhC
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERA---TCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 77 (206)
..+|+++..++++|..++..|+|++|+..|+++++++ |+ +. .+|+++|.||..+|++++|+.++++++++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999 98 55 459999999999999999999999999973
No 141
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.00 E-value=2e-07 Score=70.86 Aligned_cols=167 Identities=14% Similarity=0.175 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH---HH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK---AL 84 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~ 84 (206)
.+..|++.|...++.|+|++|++.|+...... |..+....+...++.++++.+++++|+...++-+++.|.++. ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 57899999999999999999999999999999 987778899999999999999999999999999999997754 67
Q ss_pred HHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Q psy1039 85 FRRCQAYEAIGK--------FEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVTKRMQENEQLQN------KVHNMFK 147 (206)
Q Consensus 85 ~~la~~~~~~g~--------~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~ 147 (206)
|-+|.+++..-+ ..+|...|+..+...|+++ ++...+..+...+...+-....+.- .+..-++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 778888766543 3678899999999999985 4444444444444433332221111 2445556
Q ss_pred HhcC-CCCC---hhhhHHHHhhhhHhcccchh
Q psy1039 148 YVFD-TSAP---MDKRVTAVNNLVVLAREMSG 175 (206)
Q Consensus 148 ~~~~-~~~~---~~~~~~~~~~~~~~~~~~~a 175 (206)
.+++ .|.. .+....+.+.|..+|-.++|
T Consensus 192 ~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 192 EVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 6665 3333 34444556666666655433
No 142
>PRK11906 transcriptional regulator; Provisional
Probab=99.00 E-value=7.2e-09 Score=84.77 Aligned_cols=111 Identities=13% Similarity=-0.026 Sum_probs=102.1
Q ss_pred ccchhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQ---------GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 73 (206)
..+|..+.++..++.+++.. ..-.+|.+..++|++++ |. ++.++..+|.+....++++.|...|++|
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA 364 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TV---DGKILAIMGLITGLSGQAKVSHILFEQA 364 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 67899999999999988865 23567889999999999 99 8999999999999999999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039 74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117 (206)
Q Consensus 74 l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 117 (206)
+.++|+.+.+|+..|.+....|+.++|.+.++++++++|.-..+
T Consensus 365 ~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 365 KIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 99999999999999999999999999999999999999986544
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.00 E-value=4.8e-09 Score=88.91 Aligned_cols=111 Identities=9% Similarity=0.040 Sum_probs=94.5
Q ss_pred CcccchhhHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhc--cccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQG--------DYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g--------~~~~A~~~~~~al~~--~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 70 (206)
|+..+|+++.++..++.++.... +...+.....+++.+ + |. .+.++.-+|..+...|++++|...+
T Consensus 368 Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~-~~---~~~~~~ala~~~~~~g~~~~A~~~l 443 (517)
T PRK10153 368 ILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL-NV---LPRIYEILAVQALVKGKTDEAYQAI 443 (517)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC-cC---ChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 46789999999999888776542 244556666676664 4 55 5678888999999999999999999
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116 (206)
Q Consensus 71 ~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 116 (206)
++|+.++| +..+|..+|.++...|++++|...|++++.++|.++.
T Consensus 444 ~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 444 NKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999 5889999999999999999999999999999999885
No 144
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.99 E-value=2.7e-09 Score=87.10 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA---LFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
.++..++++|.+|+.+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 389999999999999999999999999999999999865 999999999999999999999999997
No 145
>KOG0495|consensus
Probab=98.98 E-value=4.1e-08 Score=82.87 Aligned_cols=144 Identities=13% Similarity=0.016 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
....|.--+....-.++.++|+.+++.+++.. |+ ...+|..+|..+..+++.+.|...|...++..|..+..|..+
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~---f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSF-PD---FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-Cc---hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 34566777777888999999999999999999 99 899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (206)
+.+-...|+...|...++++.-.+|++...+...-++..+.+...++ .....+++. +|.+...|....
T Consensus 726 akleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a--------~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQA--------ELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHH--------HHHHHHHHHhCCccchhHHHHH
Confidence 99999999999999999999999999999999988888888888874 446666666 677766665443
No 146
>KOG2003|consensus
Probab=98.95 E-value=7.8e-08 Score=78.34 Aligned_cols=116 Identities=22% Similarity=0.254 Sum_probs=70.0
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
.+..-.+++++.|.++-..|+.++|+++|-+.-.+- -+ ++..++.++..|..+.+..+|++++.++..+-|.++..
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~n---n~evl~qianiye~led~aqaie~~~q~~slip~dp~i 594 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LN---NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAI 594 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-Hh---hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHH
Confidence 344445667777777777777777777766654444 44 56667777777777777777777777777666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 123 (206)
+..+|.+|-+.|+-.+|.+++-......|.+.+...+++.
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 6666666665555544444444444444444444444433
No 147
>KOG0543|consensus
Probab=98.94 E-value=2.7e-08 Score=79.71 Aligned_cols=119 Identities=11% Similarity=0.137 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----D-----------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 111 (206)
+......|..|++.|+|..|...|++++..-+. + ..++.+++.|+.++++|.+|+..+.++|+++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 455667899999999999999999998866331 1 3479999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccc
Q psy1039 112 PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREM 173 (206)
Q Consensus 112 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (206)
|+|..++...+.++..+++... +...|++++. .|.+..++..+..+--...++.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~--------A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDL--------ARDDFQKALKLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHH--------HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 5669999999 7888888888777766665553
No 148
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=4.2e-08 Score=72.72 Aligned_cols=111 Identities=17% Similarity=0.093 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 85 (206)
...+..++++|..|=..|-+.-|.--|.+++.+. |. .+..+..+|..+...|+|+.|.+.|+..++++|.+.-+..
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIR-PD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-CC---cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 3567789999999999999999999999999999 99 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 120 (206)
++|..++.-|++.-|...+.+-..-||++|--...
T Consensus 138 NRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 138 NRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred ccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 99999999999999999999999999999744333
No 149
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.91 E-value=1.5e-07 Score=70.76 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=99.8
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC-----------HHHHHHHHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-----------NDKVIEDCSKS 73 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~a 73 (206)
+|-.+.+.+.+|.+++..|+|++|+..|++.++.. |+++....+++.+|.+++.+.. ..+|+..|+..
T Consensus 38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l 116 (203)
T PF13525_consen 38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL 116 (203)
T ss_dssp STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999 9877788899999999877643 45899999999
Q ss_pred hhhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH---HHHHHHHHHHHH
Q psy1039 74 LEIVPDDPKA-----------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV---LSRLFAIVTKRM 132 (206)
Q Consensus 74 l~l~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---l~~~~~~~~~~~ 132 (206)
+...|++..+ -+..|.-|...|.|..|+.-++.+++..|+.+..... +...+..++...
T Consensus 117 i~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 117 IKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 9999988432 3446888999999999999999999999998755544 444444444443
No 150
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.90 E-value=5e-09 Score=66.28 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPD---DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
..+.++.++|.+|..+|+|++|+.+|++++.+ .++ ...+++++|.++..+|++++|.+.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 37889999999999999999999999999966 222 3568999999999999999999999999875
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.90 E-value=4.3e-09 Score=67.62 Aligned_cols=76 Identities=26% Similarity=0.378 Sum_probs=67.2
Q ss_pred ccCHHHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039 60 QNQNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 60 ~~~~~~A~~~~~~al~l~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
.|+|+.|+..|++++...|. +...++.+|.|++..|+|++|...+++ ...+|.+......++.++..+++.+++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58999999999999999995 466788899999999999999999999 88999999999999999999999988544
No 152
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.89 E-value=3.4e-08 Score=71.12 Aligned_cols=97 Identities=23% Similarity=0.244 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHc
Q psy1039 25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ----------NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAI 94 (206)
Q Consensus 25 ~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~ 94 (206)
|+.|.+.++.....+ |. ++..+++-|.++..+.+ +++|+.-|++|+.++|+..++++.+|.+|...
T Consensus 7 FE~ark~aea~y~~n-P~---DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PL---DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH--TT----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cH---hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 677888999999999 98 89999999998877754 56889999999999999999999999999888
Q ss_pred CC-----------HHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 95 GK-----------FEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 95 g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
+. |++|..+|+++...+|++......|....
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 65 78899999999999999988887775553
No 153
>KOG1127|consensus
Probab=98.88 E-value=1.5e-08 Score=88.65 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
..|..+|..|.+.+++..|+..|+.+++.+ |. +..+|..+|.+|...|++..|+..|+++..++|.+..+.|..|.
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~d-Pk---D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~ 638 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PK---DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAV 638 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCC-ch---hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHH
Confidence 456679999999999999999999999999 99 89999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039 90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (206)
Q Consensus 90 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 131 (206)
....+|.|.+|+..+...+............++..+.+....
T Consensus 639 ~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd 680 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKD 680 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999999999988777777777777776655543
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.88 E-value=6.2e-08 Score=75.38 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=84.5
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHH
Q psy1039 47 ATCLKNRAAVY-LKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQP 119 (206)
Q Consensus 47 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 119 (206)
...++..|..+ +..|+|++|+..|+..++..|++ +.+++++|.+|+..|++++|...|++++...|++ ++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46678888876 56799999999999999999998 5899999999999999999999999999998886 56666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChh
Q psy1039 120 VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMD 157 (206)
Q Consensus 120 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (206)
.++.++..+++... +...|++++. .|....
T Consensus 222 klg~~~~~~g~~~~--------A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAK--------AKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHH--------HHHHHHHHHHHCcCCHH
Confidence 66777776666666 5557777777 455443
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.83 E-value=5.9e-07 Score=65.21 Aligned_cols=151 Identities=16% Similarity=0.117 Sum_probs=114.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHc
Q psy1039 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL-EIVPDDPKALFRRCQAYEAI 94 (206)
Q Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~l~p~~~~~~~~la~~~~~~ 94 (206)
++...+.=+.+..+.-..+.+... |+ ..-.+.+|.....+|++.||...|.+++ -+..+++..+..++.+.+..
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~A-pT----vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIA-PT----VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhc-hh----HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence 344444456666666666666666 74 5567788888889999999999998877 45677888888899999999
Q ss_pred CCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhccc
Q psy1039 95 GKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLARE 172 (206)
Q Consensus 95 g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (206)
+++.+|...+++..+.+|. .|+-...+++.+...+...+ ++..|+.+++.-...+.+...+..+..+|+.
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~--------Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYAD--------AESAFEVAISYYPGPQARIYYAEMLAKQGRL 209 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchh--------HHHHHHHHHHhCCCHHHHHHHHHHHHHhcch
Confidence 9999999999998888885 46677777888877777777 4447888888666677788888888888877
Q ss_pred chhhHHH
Q psy1039 173 MSGAEML 179 (206)
Q Consensus 173 ~~a~~~~ 179 (206)
+++-..+
T Consensus 210 ~ea~aq~ 216 (251)
T COG4700 210 REANAQY 216 (251)
T ss_pred hHHHHHH
Confidence 6555444
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.81 E-value=7.1e-08 Score=78.86 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=61.0
Q ss_pred HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1039 21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100 (206)
Q Consensus 21 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A 100 (206)
..++++.|+..+++..+.+ |+ ....++.++...++-.+|+..++++++.+|.+...+...|..+...++++.|
T Consensus 181 ~t~~~~~ai~lle~L~~~~-pe------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD-PE------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred hcccHHHHHHHHHHHHhcC-Cc------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3445555555555555555 43 1223555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039 101 YTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 101 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
....+++....|++-..|..|+.++..+++.+.+.-
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 555555555555555555555555555555555543
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.80 E-value=8.6e-07 Score=68.38 Aligned_cols=126 Identities=12% Similarity=0.133 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC------------------HHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ------------------NDKVIE 68 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~------------------~~~A~~ 68 (206)
-...+.+.+|.++++.|+|++|+..|++.++.. |+++....+++.+|.++...+. ..+|+.
T Consensus 67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 344556999999999999999999999999999 9877788999999999755541 357889
Q ss_pred HHHHHhhhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH---HHHHHHHH
Q psy1039 69 DCSKSLEIVPDDPKA-----------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV---LSRLFAIV 128 (206)
Q Consensus 69 ~~~~al~l~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---l~~~~~~~ 128 (206)
.|++.++..|++.-+ -+..|.-|.+.|.|..|+.-++.++...|+.+..... +...+..+
T Consensus 146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l 225 (243)
T PRK10866 146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL 225 (243)
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 999999999987432 3345788999999999999999999999987655444 44445454
Q ss_pred HHHHH
Q psy1039 129 TKRMQ 133 (206)
Q Consensus 129 ~~~~~ 133 (206)
+....
T Consensus 226 g~~~~ 230 (243)
T PRK10866 226 QLNAQ 230 (243)
T ss_pred CChHH
Confidence 44444
No 158
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.80 E-value=1.8e-07 Score=71.64 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=86.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 126 (206)
.++.|.-+++.|+|.+|...|..-++..|.+ +.++|+||.+++.+|+|++|...|..+..-.|+++.+-..+-.+-.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7899999999999999999999999999976 6899999999999999999999999999999988665555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHH
Q psy1039 127 IVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA 162 (206)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 162 (206)
.+++..+.+. +...++.+.. .|+........
T Consensus 224 ~~~~l~~~d~-----A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 224 SLGRLGNTDE-----ACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHhcCHHH-----HHHHHHHHHHHCCCCHHHHHHH
Confidence 4444444333 6667877777 56665555443
No 159
>KOG2376|consensus
Probab=98.79 E-value=3e-07 Score=76.76 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=106.4
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
...|++..+++..-..+.+.++|++|+...+. . +-........+..+.|.+++++.++|+..++ .+++.+..
T Consensus 40 ~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk----~-~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ 111 (652)
T KOG2376|consen 40 SIVPDDEDAIRCKVVALIQLDKYEDALKLIKK----N-GALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDK 111 (652)
T ss_pred hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHh----c-chhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchH
Confidence 34455666666666666666666666533222 2 2100122233688889999999999988887 56677777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (206)
.....|.+++++|+|++|...|+...+.+.++.+.......+...-.. ..+..+.... ++++-+....
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-----------~~~~~q~v~~v~e~syel~yN 180 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-----------QVQLLQSVPEVPEDSYELLYN 180 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-----------hHHHHHhccCCCcchHHHHHH
Confidence 888889999999999999999988887766655444333222211111 1113444444 5567888899
Q ss_pred HHhhhhHhcccchhhHHHHhc
Q psy1039 162 AVNNLVVLAREMSGAEMLLKS 182 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~~~ 182 (206)
.+-.++..|++++|++-+.+.
T Consensus 181 ~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 181 TACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHHHHhcccHHHHHHHHHHH
Confidence 999999999999999999665
No 160
>KOG1308|consensus
Probab=98.77 E-value=1.1e-08 Score=80.18 Aligned_cols=102 Identities=28% Similarity=0.460 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
.+......+..++..|.+++|++.|..++.++ |. .+.++..++.+++++++...|+.+|..++.++|+....|-.+
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~ln-p~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr 188 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIELN-PP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR 188 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhcccccccccC-Cc---hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence 34456667888999999999999999999999 98 899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
|.+...+|+|.+|..++..+.+++-+
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhcccc
Confidence 99999999999999999999998643
No 161
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.67 E-value=1.2e-06 Score=77.52 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-CCCHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKAL 84 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~ 84 (206)
.+...|..+...|.+.|++++|+..|.+..+.+- |+ ...+..+..++.+.|++++|.+.+..+++.. +.+..++
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID----QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 3556677777777777777777777777655320 44 3455556666666666666666666666554 3455556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 133 (206)
..+...|.+.|++++|.+.|++..+ .+...++.+...+...++..+
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHH
Confidence 6666666666666666666665532 234445555555544444444
No 162
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.5e-07 Score=69.79 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=72.7
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
+|.++|+-+.++..+|..+...|+|+.|.+.|+-.++++ |. ..-+..|+|..++.-|+|.-|.+.+.+--+-+|.+
T Consensus 91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~---y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PT---YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-Cc---chHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence 467899999999999999999999999999999999999 98 78889999999999999999999999998989887
Q ss_pred HH
Q psy1039 81 PK 82 (206)
Q Consensus 81 ~~ 82 (206)
|-
T Consensus 167 Pf 168 (297)
T COG4785 167 PF 168 (297)
T ss_pred hH
Confidence 53
No 163
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.66 E-value=5e-06 Score=76.15 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=22.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHhhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1039 53 RAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108 (206)
Q Consensus 53 la~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 108 (206)
+-.+|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|...|.+..
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3333444444444444444443332 2233334444444444444444444444433
No 164
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.66 E-value=1e-06 Score=72.19 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
.+++....++.++...++-.+|++.+.+++... |. +..++...+..+...++++.|+..+++++.+.|++..+|+.
T Consensus 198 ~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~---d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~ 273 (395)
T PF09295_consen 198 RDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQ---DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQ 273 (395)
T ss_pred cCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 346688889999999999999999999999999 98 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
|+.+|..+|+|+.|...+..+--.
T Consensus 274 La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 274 LAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999887755433
No 165
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.65 E-value=5.4e-06 Score=75.92 Aligned_cols=159 Identities=9% Similarity=0.025 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh----hCCCCHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE----IVPDDPK 82 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----l~p~~~~ 82 (206)
+...|..+...|.+.|++++|+..|......+- |+ ...|..+...+.+.|++++|.+.|.+... +.| +..
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~v 580 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD----RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHI 580 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHH
Confidence 345666666667777777777777766654321 43 45566666667777777777777776654 233 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChhhh
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVE-PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD--TSAPMDKR 159 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 159 (206)
.|..+..+|.+.|++++|.+.|+...+.+ +.+...+..+...+.+.++... +..+|+.+.. ..++....
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~de--------Al~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF--------ALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH--------HHHHHHHHHHcCCCCCHHHH
Confidence 56666667777777777777777776654 3345555555555555555444 2234444443 13334444
Q ss_pred HHHHhhhhHhcccchhhHHH
Q psy1039 160 VTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~ 179 (206)
..+...+...|+.++|.+.+
T Consensus 653 nsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 44555555555555444433
No 166
>KOG4648|consensus
Probab=98.64 E-value=1.6e-07 Score=74.13 Aligned_cols=108 Identities=16% Similarity=0.224 Sum_probs=88.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
.-..|..|+++|+|++|+.+|.+++.++|.|+-.+.++|.+|+.+..|..|...+..++.++.....+....+.....++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999999887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039 130 KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN 165 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 165 (206)
...+ +..-+..++. .|...+.+...+..
T Consensus 180 ~~~E--------AKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNME--------AKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred hHHH--------HHHhHHHHHhhCcccHHHHHHHHHh
Confidence 6666 3335555555 56665555554443
No 167
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.62 E-value=7e-07 Score=61.11 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChhHHHHH
Q psy1039 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT---NKAIQPVL 121 (206)
Q Consensus 48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 121 (206)
.+.+.+|.++-.+|+.++|+..|++++...++. ..+++.+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999976544 568999999999999999999999999999888 66777666
Q ss_pred HHHHHHHHHHHHHH
Q psy1039 122 SRLFAIVTKRMQEN 135 (206)
Q Consensus 122 ~~~~~~~~~~~~~~ 135 (206)
+......++..++.
T Consensus 82 Al~L~~~gr~~eAl 95 (120)
T PF12688_consen 82 ALALYNLGRPKEAL 95 (120)
T ss_pred HHHHHHCCCHHHHH
Confidence 66666666666633
No 168
>KOG4234|consensus
Probab=98.62 E-value=8.6e-07 Score=65.07 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-----KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 121 (206)
+.-+-.-|.-++..|+|.+|...|..|+.+.|.-+ -.|.++|.+.+.++.++.|+..+.++++++|.+..+....
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 44455678888999999999999999999999753 3677899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhh
Q psy1039 122 SRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL 166 (206)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 166 (206)
+.++..+..... +..-|++.+. +|...+.+...++.-
T Consensus 175 Aeayek~ek~ee--------aleDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 175 AEAYEKMEKYEE--------ALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHHHHhhhhHHH--------HHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 899888877666 4447777777 676666665555443
No 169
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=1.5e-06 Score=68.68 Aligned_cols=119 Identities=13% Similarity=0.075 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH--Hcc--CHHHHHHHHHHHhhhCCCCHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYL--KQN--QNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~--~~~--~~~~A~~~~~~al~l~p~~~~ 82 (206)
.+.+.....-.+++..++++.|.+.++..-+.+ .+ .. ..+++.++. ..| ++.+|.-.|++.....|.++.
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD---~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~ 202 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQID-ED---SI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK 202 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CC---HH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cc---HH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH
Confidence 345666667788889999999999999988887 66 33 344444443 344 699999999998888888999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 131 (206)
.+..+|.++..+|+|++|...++.++..+|+++++..++..+...+++.
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999998887777766
No 170
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.61 E-value=5e-07 Score=71.43 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
.++......|.+++..|++++|++.+.+. . +.++....-.++.++++++.|...++.+-+++.+.+-..+.
T Consensus 100 ~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa 170 (290)
T PF04733_consen 100 SNEIVQLLAATILFHEGDYEEALKLLHKG---G------SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLA 170 (290)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---T------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHcc---C------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 45566777888999999999998887764 2 35666677889999999999999999999999888777777
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039 87 RCQAYEAIG--KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (206)
Q Consensus 87 la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (206)
.|.+.+..| .+.+|.-.|+......|.++.+...++.++..+++..++.. .+..++. .|.+......++
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~--------~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEE--------LLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHH--------HHHHHCCC-CCHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHH--------HHHHHHHhccCCHHHHHHHH
Confidence 777777777 59999999999888888999999999999999999999554 7777788 788889889999
Q ss_pred hhhhHhcccchhhHHHH
Q psy1039 164 NNLVVLAREMSGAEMLL 180 (206)
Q Consensus 164 ~~~~~~~~~~~a~~~~~ 180 (206)
.+...+|+..++.+.++
T Consensus 243 v~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 243 VCSLHLGKPTEAAERYL 259 (290)
T ss_dssp HHHHHTT-TCHHHHHHH
T ss_pred HHHHHhCCChhHHHHHH
Confidence 98899999876666553
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.56 E-value=1e-05 Score=58.88 Aligned_cols=118 Identities=16% Similarity=0.162 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--CHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DPKALFR 86 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~ 86 (206)
....+.+|+.+...|++.+|..+|++++.----+ ++..+..++.+.+..+++..|...+++..+.+|. .++....
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3456789999999999999999999998842034 5778899999999999999999999999999996 5788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 130 (206)
+|.++...|.+.+|...|+.++.-.|+- ......+.+....+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr 208 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGR 208 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcc
Confidence 9999999999999999999999988874 444555555555553
No 172
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.55 E-value=2.2e-07 Score=51.96 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
.+..+|..|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45555666666666666666666666666666666555553
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.53 E-value=9.6e-07 Score=69.67 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--C----
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--D---- 79 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~---- 79 (206)
.++.+...|+.|-..|+|++|...|.++.++.. .+....+..+...+.++.+. ++.+|+.+|++++.+.- .
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 366777888888899999999999999988652 12233566777777777555 99999999999998732 1
Q ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1039 80 DPKALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT 152 (206)
Q Consensus 80 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
-..++..+|.+|... |++++|++.|++++.+.... ......++.++..++++.+ +...|++....
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~--------A~~~~e~~~~~ 184 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE--------AIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH--------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH--------HHHHHHHHHHH
Confidence 145788899999999 99999999999999974322 2334455666666666655 33455555431
Q ss_pred ----C-CCh---hhhHHHHhhhhHhcccchh
Q psy1039 153 ----S-APM---DKRVTAVNNLVVLAREMSG 175 (206)
Q Consensus 153 ----~-~~~---~~~~~~~~~~~~~~~~~~a 175 (206)
+ ... ......+.|++..|+...|
T Consensus 185 ~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A 215 (282)
T PF14938_consen 185 CLENNLLKYSAKEYFLKAILCHLAMGDYVAA 215 (282)
T ss_dssp CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred hhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 1 111 2334566677777777433
No 174
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.53 E-value=1.3e-07 Score=49.73 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=28.6
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1039 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY 101 (206)
Q Consensus 70 ~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~ 101 (206)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68889999999999999999999999998885
No 175
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.50 E-value=3.1e-07 Score=51.36 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 123 (206)
+.+++.+|.+|..+|++++|++.|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3678999999999999999999999999999999999988865
No 176
>PLN03077 Protein ECB2; Provisional
Probab=98.50 E-value=5.6e-06 Score=74.92 Aligned_cols=160 Identities=11% Similarity=0.052 Sum_probs=118.6
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--CCHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--DDPK 82 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~~~ 82 (206)
+.+...|..+...|.+.|+.++|+..|++..+.+- |+ ...+..+-.++.+.|.+++|...|+...+..+ .+..
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd----~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD----EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 34667889999999999999999999998877431 65 34455555678889999999999999874432 3457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (206)
.|..+..++.+.|++++|.+.+++. ...|+ ..++..+-..+..-++.+. .+...+++++ .|.+......
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~--------~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVEL--------GELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHH--------HHHHHHHHHhhCCCCcchHHH
Confidence 8889999999999999999999875 45565 4444444444433333332 2335556666 6888999999
Q ss_pred HHhhhhHhcccchhhHHH
Q psy1039 162 AVNNLVVLAREMSGAEML 179 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~ 179 (206)
+++.|...|+++++.+..
T Consensus 697 l~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 697 LCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHHHHHHCCChHHHHHHH
Confidence 999999999998776644
No 177
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.49 E-value=4.7e-06 Score=73.80 Aligned_cols=158 Identities=10% Similarity=0.037 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--CCHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--DDPKAL 84 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~~~~~ 84 (206)
+...|..+...|.+.|+.++|++.|++..+.+- |+ ...+..+-.++.+.|..++|.+.|+...+..+ .+...|
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd----~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN----HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 445677777888888888888888887766431 54 45566666777788888888888887765322 234567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (206)
..+..++.+.|++++|.+.+++. ...|+ ..++..+...+...++.+. +...+++++. .|.+......++
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~--------a~~~~~~l~~~~p~~~~~y~~L~ 535 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLEL--------GRLAAEKLYGMGPEKLNNYVVLL 535 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHH--------HHHHHHHHhCCCCCCCcchHHHH
Confidence 77788888888888888877654 23333 3345555555555454444 3446677777 677777888899
Q ss_pred hhhhHhcccchhhHHH
Q psy1039 164 NNLVVLAREMSGAEML 179 (206)
Q Consensus 164 ~~~~~~~~~~~a~~~~ 179 (206)
+.|...|++++|.+.+
T Consensus 536 ~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 536 NLYNSSGRQAEAAKVV 551 (697)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 9999999998888776
No 178
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.47 E-value=3.7e-05 Score=56.54 Aligned_cols=163 Identities=21% Similarity=0.220 Sum_probs=101.6
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHH-HHHHccCHHHHHHHHHHHhhhCC---CC
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAA-VYLKQNQNDKVIEDCSKSLEIVP---DD 80 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~l~p---~~ 80 (206)
.+.....+...|......+++..++..+..++... +. ........+. ++...|++..|...+.+++...| ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALD-PD---PDLAEALLALGALYELGDYEEALELYEKALELDPELNEL 166 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-CC---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccch
Confidence 45566677777777777777777777777777766 54 3333334444 67777788888888877777666 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK 158 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (206)
...+...+..+...++++.|...+.+++...|. .......++..+...+.... +...+..+.. .+.....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------a~~~~~~~~~~~~~~~~~ 238 (291)
T COG0457 167 AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE--------ALEYYEKALELDPDNAEA 238 (291)
T ss_pred HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH--------HHHHHHHHHhhCcccHHH
Confidence 555666666677777788888888777777777 56666666666655553344 3335555555 3333344
Q ss_pred hHHHHhhhhHhcccchhhHHH
Q psy1039 159 RVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~ 179 (206)
....+..+...+..+.+...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 239 LYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred HhhHHHHHHHcCCHHHHHHHH
Confidence 444444444444344444444
No 179
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.45 E-value=4e-07 Score=47.83 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD 79 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 79 (206)
+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 180
>KOG1130|consensus
Probab=98.43 E-value=1.9e-06 Score=69.59 Aligned_cols=164 Identities=14% Similarity=0.137 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----CCCC--
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPDD-- 80 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~~-- 80 (206)
..++-++|++|+-.|+|++||..-+.-+++.. +++...-.++.++|.|+.-+|+|+.|+++|...+.+ ...-
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 45678899999999999999998887777652 233334567899999999999999999999986544 3332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT------NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA 154 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
....|.+|..|.-+.+++.|+.+..+-+.+... ...+.-.++..+..++...++.. +-....+.-..+-+...
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~-fae~hl~~s~ev~D~sg 353 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY-FAELHLRSSLEVNDTSG 353 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHhCCcch
Confidence 456889999999999999999999887765432 23445566777777777666543 11111222223333445
Q ss_pred ChhhhHHHHhhhhHhcccc
Q psy1039 155 PMDKRVTAVNNLVVLAREM 173 (206)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~ 173 (206)
....+..+....+.+|..+
T Consensus 354 elTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 354 ELTARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhhhhHHHHHHhCCCc
Confidence 7888888888888888764
No 181
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.42 E-value=1.7e-05 Score=55.42 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 121 (206)
.+..++..|...+..|+|.+|++.|+.+....|-. ..+.+.+|.+|+..|++++|+..+++-++++|.|+.+...+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 46778999999999999999999999999998854 67899999999999999999999999999999998665443
No 182
>KOG3785|consensus
Probab=98.42 E-value=1.1e-05 Score=64.32 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=80.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH
Q psy1039 18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF 97 (206)
Q Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 97 (206)
-++...+|.-|+..++-....+ .+- ....-.-+|.|++.+|+|++|+..|.-+..-+..+.+.+.++|.|++.+|.|
T Consensus 31 dfls~rDytGAislLefk~~~~-~EE--E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLD-REE--EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHhcccchhHHHHHHHhhccc-hhh--hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4667889999999999988776 431 2344555899999999999999999999987778889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 98 EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
.+|.....++ |++|--...+..+..+++
T Consensus 108 ~eA~~~~~ka----~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 108 IEAKSIAEKA----PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence 9998776655 555544444433333333
No 183
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.42 E-value=8.4e-06 Score=58.94 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH
Q psy1039 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF----------EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 132 (206)
|+.|.+.++.....+|.+.+++++-|.++..+.++ ++|+.-|+.++.++|+..++...++..+...+...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 78899999999999999999999999998888655 56788889999999999999999999999887643
Q ss_pred HH---HHHHHHHHHHHHHHhcC-CCCChhhhHHH
Q psy1039 133 QE---NEQLQNKVHNMFKYVFD-TSAPMDKRVTA 162 (206)
Q Consensus 133 ~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 162 (206)
.. ..+.-+++..+|+++.+ .|.+..++..+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 32 23445568889999998 77776666543
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.41 E-value=7.9e-06 Score=64.50 Aligned_cols=111 Identities=22% Similarity=0.343 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcccc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---
Q psy1039 7 NDYNKLKESGNSAFKQ-GDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD--- 80 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~~p--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--- 80 (206)
..+..+..+|.+|... |++++|+++|++|+++... .......++...|.++...|+|++|++.|+++....-++
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 4577888999999999 9999999999999998631 122346678899999999999999999999987653211
Q ss_pred ---H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039 81 ---P-KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117 (206)
Q Consensus 81 ---~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 117 (206)
. ..++..+.|++..||...|.+.+++....+|.....
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2 345677899999999999999999999999976554
No 185
>KOG1130|consensus
Probab=98.39 E-value=2.1e-06 Score=69.41 Aligned_cols=171 Identities=15% Similarity=0.147 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHH
Q psy1039 8 DYNKLKESGNSAFKQGD--------------------YETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDK 65 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~--------------------~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~ 65 (206)
.+.++|++|++|...|+ ++.|+++|+.-+++.. .++.....++-++|.+|+.+|+|+.
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 46789999999998776 4556677777666641 1223356688899999999999999
Q ss_pred HHHHHHHHhhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCC--hhHHHHHHHHHHHHHHHHH
Q psy1039 66 VIEDCSKSLEIVPDD------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE----PTN--KAIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 66 A~~~~~~al~l~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--~~~~~~l~~~~~~~~~~~~ 133 (206)
|+..-+.-+.+...+ ..++.++|.|+..+|+|+.|.++|++.+.+. ... ......++..+..+++...
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~k 293 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQK 293 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHH
Confidence 999888777665433 4578899999999999999999999876542 222 3444567777777776666
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 134 ENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+.. +-.+-..+-+.+-+.-........+++.+..+|..+.|+...
T Consensus 294 AI~-Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 294 AIT-YHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 332 111111122222223567788889999999999999888765
No 186
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.39 E-value=0.00014 Score=58.59 Aligned_cols=122 Identities=11% Similarity=0.137 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC-CCHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP-DDPKALFRR 87 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~l 87 (206)
+......|..-+..|+|.+|.....+.-+.. +. ....+..-+.+--.+|+++.|-.+..++-+..+ +...+...+
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltr 159 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTR 159 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHH
Confidence 3344557888888999999999999988887 76 555666677788899999999999999999854 456788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHH
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE 134 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 134 (206)
+.++...|+++.|.....++++..|.++.+.....+++...+.....
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l 206 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQAL 206 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999999999999988888887766553
No 187
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.38 E-value=7.2e-07 Score=46.80 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 188
>KOG4340|consensus
Probab=98.34 E-value=1.7e-05 Score=61.82 Aligned_cols=153 Identities=11% Similarity=0.074 Sum_probs=106.4
Q ss_pred HHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1039 19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE 98 (206)
Q Consensus 19 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~ 98 (206)
+.+..+|.+||++..--.+.. |. +--.+..+|.||+...+|..|..+|++...+.|......+..|..+++.+.+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~-p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERS-PR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-cc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 367889999999999999998 87 67778899999999999999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH-----------------HHHHHH-----------HHHHHHHHHHhc
Q psy1039 99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM-----------------QENEQL-----------QNKVHNMFKYVF 150 (206)
Q Consensus 99 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-----------------~~~~~~-----------~~~~~~~~~~~~ 150 (206)
+|........ +++..+...-.+...++-.+ .+...+ .+.+.+-|+.+.
T Consensus 96 DALrV~~~~~----D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 96 DALRVAFLLL----DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHHHHHhc----CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 9887765443 22333332222222211100 000000 012344556666
Q ss_pred C-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 151 D-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 151 ~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
. ..-+.-.....+-++.+.++++.|++.+
T Consensus 172 qvsGyqpllAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred hhcCCCchhHHHHHHHHHhhhhHHHHHHHH
Confidence 5 4455555666777777777777777665
No 189
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.34 E-value=1.6e-06 Score=45.36 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=11.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCC
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVP 78 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p 78 (206)
++.+|.+++.+|++++|+.+|+++++++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444444444
No 190
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.33 E-value=1.6e-06 Score=45.33 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
+.+++.+|.++..+|++++|+++|++++.++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
No 191
>KOG3785|consensus
Probab=98.32 E-value=2.4e-05 Score=62.36 Aligned_cols=163 Identities=16% Similarity=0.070 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh--------------hh
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL--------------EI 76 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------------~l 76 (206)
.-..+|..+++.|+|++|+..|.-+..-++| .+.++.++|.|++.+|.|.+|.....++- ++
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~----~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDA----PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCC----CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 4455799999999999999999999886633 58899999999999999999988766542 11
Q ss_pred CC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 77 VP------------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHN 144 (206)
Q Consensus 77 ~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (206)
+. +..+--..+|.+++..-.|++|+..|++++.-+|+...+...++.++.++.-..-... -...
T Consensus 135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqe----vl~v 210 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQE----VLKV 210 (557)
T ss_pred CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHH----HHHH
Confidence 21 1122345577788888899999999999999999999888889888887765544333 1122
Q ss_pred HHHHhcCCCCChhhhHHHHhhhhHh--ccc-chhhHHHHhcch
Q psy1039 145 MFKYVFDTSAPMDKRVTAVNNLVVL--ARE-MSGAEMLLKSGV 184 (206)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~a~~~~~~~~~ 184 (206)
+.+. .|++......++-.+... |+- ++-.+.+++|..
T Consensus 211 YL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 211 YLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred HHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 2222 355555555444444433 332 334444554443
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.31 E-value=5.6e-05 Score=53.50 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccC------------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEE------------------SHERATCLKNRAAVYLKQNQNDKVIEDCSK 72 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 72 (206)
.+...|......|+...++..+.+++.+..+. ......+...++..+...|++++|+..+.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34445777788899999999999999987311 123445677788888899999999999999
Q ss_pred HhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 73 SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 73 al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
++.++|.+..++..+-.++...|+..+|...|+++..
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987643
No 193
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.31 E-value=0.00023 Score=52.27 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--ccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALK--VTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
.......+..+...+++..++..+...+. .. +. ....+...+..+...+.+..++..+..++...+........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELL-PN---LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEAL 134 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc-cc---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHH
Confidence 56778889999999999999999999987 55 66 78889999999999999999999999999998887666666
Q ss_pred HHH-HHHHcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC-ChhhhH
Q psy1039 87 RCQ-AYEAIGKFEEAYTDAKHIHRVEPT---NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSA-PMDKRV 160 (206)
Q Consensus 87 la~-~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~ 160 (206)
.+. ++...|+++.|...+.+++..+|. ...............+.... +...+.++.. .+. ......
T Consensus 135 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 135 LALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE--------ALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHH--------HHHHHHHHHhhCcccchHHHH
Confidence 677 899999999999999999887773 22333333333222333333 4456677766 455 467777
Q ss_pred HHHhhhhHhcccchhhHHH
Q psy1039 161 TAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~ 179 (206)
..+..+...+.+..+...+
T Consensus 207 ~~~~~~~~~~~~~~a~~~~ 225 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYY 225 (291)
T ss_pred HhhHHHHHcccHHHHHHHH
Confidence 7888888887776666666
No 194
>KOG4642|consensus
Probab=98.30 E-value=3.8e-06 Score=63.22 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 126 (206)
+.-+-.-|..++.-.+|..|+..|.+++.++|..+..|-+.+.|++++.+|+.+.....++++++|+....+..++.+..
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 33344567788888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q psy1039 127 IVTKRMQENE 136 (206)
Q Consensus 127 ~~~~~~~~~~ 136 (206)
..+.+..+..
T Consensus 90 ~s~~~~eaI~ 99 (284)
T KOG4642|consen 90 QSKGYDEAIK 99 (284)
T ss_pred hhccccHHHH
Confidence 8888777554
No 195
>PLN03077 Protein ECB2; Provisional
Probab=98.29 E-value=8.1e-05 Score=67.53 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHH----------------------------------HHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCL----------------------------------KNR 53 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~----------------------------------~~l 53 (206)
+...|..+...|...|++++|+..|++.+....|+ ..... ..+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd---~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN---SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC---HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 34456666677777777777777777766432254 21111 123
Q ss_pred HHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHHHHH
Q psy1039 54 AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR--VEPTNKAIQPVLSRLFAIVTKR 131 (206)
Q Consensus 54 a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~ 131 (206)
-..|.+.|++++|...|+.. +.+..+|..+...|...|+.++|...|++... ..|+.......+ ..+...+..
T Consensus 531 i~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~~~g~v 605 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSRSGMV 605 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHhhcChH
Confidence 35677778888888888765 55777888888899999999999999998776 355544433333 334444554
Q ss_pred HHHHHHHHHHHHHHHHHhcC---CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039 132 MQENEQLQNKVHNMFKYVFD---TSAPMDKRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
++ +..+|+.+.. ..++..........+...|+.++|.+.+-
T Consensus 606 ~e--------a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 606 TQ--------GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HH--------HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44 4446766662 35566777788888888888888877664
No 196
>KOG1915|consensus
Probab=98.28 E-value=0.00014 Score=60.16 Aligned_cols=162 Identities=11% Similarity=0.079 Sum_probs=135.5
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
+.-+...|...|.--..+++++.|-..|++|+..+ .. +..+|...+.+-++......|...+++|+.+-|.-...|
T Consensus 69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r---~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW 144 (677)
T KOG1915|consen 69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YR---NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW 144 (677)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cc---cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH
Confidence 34456677788888888999999999999999999 87 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHh
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVN 164 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (206)
+.....-..+|+...|.+.|++=+...|+.......+ ....+.++-+. +..+|.+....-++...+...+.
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI-~fElRykeier--------aR~IYerfV~~HP~v~~wikyar 215 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFI-KFELRYKEIER--------ARSIYERFVLVHPKVSNWIKYAR 215 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHH-HHHHHhhHHHH--------HHHHHHHHheecccHHHHHHHHH
Confidence 9999999999999999999999999999865443333 33333333333 56688888886678888999999
Q ss_pred hhhHhcccchhhHHH
Q psy1039 165 NLVVLAREMSGAEML 179 (206)
Q Consensus 165 ~~~~~~~~~~a~~~~ 179 (206)
.-...|...-+.+.+
T Consensus 216 FE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 216 FEEKHGNVALARSVY 230 (677)
T ss_pred HHHhcCcHHHHHHHH
Confidence 988888877776666
No 197
>KOG4555|consensus
Probab=98.27 E-value=3.7e-05 Score=52.84 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hHHHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK----AIQPVLS 122 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~ 122 (206)
+..+...|.+....|+.+.|++.|.+++.+-|..+.+|.+++.++.-.|+.++|...+.+++++..+.. .+...-+
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 344666788899999999999999999999999999999999999999999999999999999876543 3444556
Q ss_pred HHHHHHHHHHHH
Q psy1039 123 RLFAIVTKRMQE 134 (206)
Q Consensus 123 ~~~~~~~~~~~~ 134 (206)
.++...++...+
T Consensus 123 ~lyRl~g~dd~A 134 (175)
T KOG4555|consen 123 LLYRLLGNDDAA 134 (175)
T ss_pred HHHHHhCchHHH
Confidence 666666655553
No 198
>KOG2053|consensus
Probab=98.21 E-value=0.0002 Score=62.89 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=111.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH
Q psy1039 18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF 97 (206)
Q Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 97 (206)
-....+++.+|+....+.++.. |+ ...+....|..+.++|+.++|..+++..-...+++...+-.+-.||..+|++
T Consensus 18 d~ld~~qfkkal~~~~kllkk~-Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH-PN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence 3456789999999999999999 99 7888888999999999999999888777777888888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhH
Q psy1039 98 EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVV 168 (206)
Q Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (206)
++|...|+++...+|+ ......+...+.+.+.+.+.+. .+.++|+-+ |...-+-....-.+++
T Consensus 94 d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk----aa~~LyK~~---pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK----AALQLYKNF---PKRAYYFWSVISLILQ 156 (932)
T ss_pred hHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhC---CcccchHHHHHHHHHH
Confidence 9999999999999999 7788888888877777665333 455666632 4443333333333333
No 199
>KOG1310|consensus
Probab=98.19 E-value=9.4e-06 Score=67.48 Aligned_cols=112 Identities=25% Similarity=0.360 Sum_probs=99.1
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhhCCCCH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~p~~~ 81 (206)
-|...+.+...|+-.+..+.+..|+..|.+++... |. ...++.+++.++++.+ +.-.|+.++..+++++|...
T Consensus 370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~-~~---~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ 445 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYV-PD---AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ 445 (758)
T ss_pred chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhc-cc---hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH
Confidence 36778889999999999999999999999999999 98 8999999999998874 67789999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 120 (206)
+++++++.++..++++.+|..+...+....|.+......
T Consensus 446 kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~ 484 (758)
T KOG1310|consen 446 KAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNF 484 (758)
T ss_pred HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhh
Confidence 999999999999999999999988877778865544333
No 200
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.12 E-value=0.0011 Score=53.50 Aligned_cols=169 Identities=14% Similarity=0.203 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
.....+..-+...-..|+++.|-.+..++.++. +++ +......++......|+++.|.....+++++.|.++.+..-
T Consensus 116 ~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~--~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrL 192 (400)
T COG3071 116 QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDD--TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRL 192 (400)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCc--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHH
Confidence 334455666677888999999999999999994 432 46667789999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR-LFA-IVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (206)
.-.+|...|+|.+....+.+.-+..--+.+-...+.. .+. .+.+...... ......+.+.... .-.+..+....+
T Consensus 193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~--~~gL~~~W~~~pr~lr~~p~l~~~~a 270 (400)
T COG3071 193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG--SEGLKTWWKNQPRKLRNDPELVVAYA 270 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc--chHHHHHHHhccHHhhcChhHHHHHH
Confidence 9999999999999988887766544322222222211 111 1111111111 0014456666655 356688889999
Q ss_pred hhhhHhcccchhhHHHH
Q psy1039 164 NNLVVLAREMSGAEMLL 180 (206)
Q Consensus 164 ~~~~~~~~~~~a~~~~~ 180 (206)
..+.+.|.+++|.+.+.
T Consensus 271 ~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 271 ERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHHcCChHHHHHHHH
Confidence 99999999999988883
No 201
>KOG2796|consensus
Probab=98.09 E-value=8.4e-05 Score=57.05 Aligned_cols=111 Identities=20% Similarity=0.247 Sum_probs=93.7
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
+|.++.....+|...++-|+-+.|..+|++.-+... .+.........+.+..|.-.++|.+|...|.+++..+|.++-
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 367788899999999999999999999995433220 011124556677888888889999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 115 (206)
+..++|.|+..+|+..+|++.++.++...|...
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999754
No 202
>KOG4340|consensus
Probab=98.08 E-value=0.00011 Score=57.53 Aligned_cols=129 Identities=11% Similarity=0.071 Sum_probs=107.6
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh--------
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-------- 75 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-------- 75 (206)
-+|.+-..+..+|.+|+...+|..|-++|++...+. |. .....+.-+..+++.+.+..|+........
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~---~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~ 114 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PE---LEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRV 114 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hH---HHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHH
Confidence 467677789999999999999999999999999999 98 777777788888888888888765543322
Q ss_pred --h--------------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039 76 --I--------------------VP--DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (206)
Q Consensus 76 --l--------------------~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 131 (206)
+ -| ...+...+.|.+.++.|+++.|++-|+.+++...-++-...+++.++.+.+++
T Consensus 115 lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qy 194 (459)
T KOG4340|consen 115 LQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQY 194 (459)
T ss_pred HHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhH
Confidence 1 12 23556788899999999999999999999999999999999999999988888
Q ss_pred HHHHH
Q psy1039 132 MQENE 136 (206)
Q Consensus 132 ~~~~~ 136 (206)
..+..
T Consensus 195 asALk 199 (459)
T KOG4340|consen 195 ASALK 199 (459)
T ss_pred HHHHH
Confidence 77655
No 203
>KOG2053|consensus
Probab=98.08 E-value=0.00018 Score=63.22 Aligned_cols=173 Identities=13% Similarity=0.134 Sum_probs=125.2
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
++.+|+..-+....|.++++.|+.++|..+++..-... ++ +-..+..+-.||..++++++|...|++++..+|. .
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~---D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e 110 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GT---DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E 110 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CC---chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H
Confidence 45689999999999999999999999998887776666 77 6777888999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCC---Ch
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-IQPVLSRLFAIVTKRMQEN-EQLQNKVHNMFKYVFDTSA---PM 156 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~ 156 (206)
+..+.+=.+|.+.++|.+-.+.--+.-+..|+++. .|..+..+...+....... +..-..+..++++.+..++ ..
T Consensus 111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~ 190 (932)
T KOG2053|consen 111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE 190 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence 88888889999999997766555555556787763 4555544444433322211 1222335566677666332 22
Q ss_pred hhhHHHHhhhhHhcccchhhHHH
Q psy1039 157 DKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.-.....-++-.+|++++|+..+
T Consensus 191 aE~~Lyl~iL~~~~k~~eal~~l 213 (932)
T KOG2053|consen 191 AEIILYLLILELQGKYQEALEFL 213 (932)
T ss_pred HHHHHHHHHHHhcccHHHHHHHH
Confidence 22333444555667778888777
No 204
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.08 E-value=3.3e-06 Score=44.35 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=28.7
Q ss_pred HHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHH
Q psy1039 31 FYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVI 67 (206)
Q Consensus 31 ~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~ 67 (206)
+|+++|+++ |+ ++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~-P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELN-PN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHC-CC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 378889999 98 8999999999999999998885
No 205
>KOG2376|consensus
Probab=98.07 E-value=0.00028 Score=59.58 Aligned_cols=126 Identities=12% Similarity=0.225 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
..++.--+.+...|+|++|+....+.+... |+ ...+++..-.|+.+.++|++|+...++-....-.+.. .|..|.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pd---d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAY 87 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PD---DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAY 87 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CC---cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHH
Confidence 456666677888999999999999999999 98 8888999999999999999998544432222222222 279999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 90 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
|.++++..++|.++++ .+++.++.+...-+.+..+++.+.+ +...|+.+..
T Consensus 88 c~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~yde--------aldiY~~L~k 138 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDE--------ALDIYQHLAK 138 (652)
T ss_pred HHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHH--------HHHHHHHHHh
Confidence 9999999999999998 5677777788888888889998888 5557777755
No 206
>PRK10941 hypothetical protein; Provisional
Probab=98.05 E-value=3.1e-05 Score=60.41 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039 44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (206)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 123 (206)
..-.....++-.+|...++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|++..|...++..++..|+++.+......
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 34556778888999999999999999999999999999999999999999999999999999999999999988665544
Q ss_pred HH
Q psy1039 124 LF 125 (206)
Q Consensus 124 ~~ 125 (206)
+.
T Consensus 258 l~ 259 (269)
T PRK10941 258 IH 259 (269)
T ss_pred HH
Confidence 43
No 207
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.05 E-value=0.00022 Score=56.23 Aligned_cols=119 Identities=11% Similarity=0.018 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK-QNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
+|....+...+.+..+.|-..|.+|..-. +- +..+|...|..-+. .++.+.|...|+.+++..|.+...|.....
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~---~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RC---TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CC---CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 56667777777788999999999998655 54 67788888988667 456666999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHHHH
Q psy1039 90 AYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 90 ~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~ 133 (206)
-+...++.+.|...|++++..-|... .++..........|+...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~ 125 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLES 125 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999877655 444444444444444333
No 208
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.99 E-value=0.00046 Score=50.66 Aligned_cols=100 Identities=17% Similarity=0.107 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH--HHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA--LFRR 87 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~--~~~l 87 (206)
.+...++..++..|++++|+..++.++... .+....+-+-.++|.+....|++++|+..+.... .++..+ --.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---~~~w~~~~~elr 165 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-KDENLKALAALRLARVQLQQKKADAALKTLDTIK---EESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---cccHHHHHHHHh
Confidence 345677889999999999999999999876 5545566778889999999999999998886532 233333 4567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
|.++...|+-++|...|++++..+++
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99999999999999999999998744
No 209
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.97 E-value=7.2e-05 Score=43.31 Aligned_cols=47 Identities=17% Similarity=0.283 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 128 (206)
+.+|.+|..++++|+|++|..+.+.+++.+|+|..+......+...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 46777888888888888888888888888888887766665554443
No 210
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.97 E-value=1.6e-05 Score=41.48 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=12.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCC
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVP 78 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p 78 (206)
|+.+|.+|..+|++++|+..|+++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444444444444444444444443
No 211
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00018 Score=56.01 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
..-+.-+......|++.+|...|..++...|++.++...++.|+...|+.+.|...+.. .|.+.......+ +..+
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~-l~a~ 209 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHG-LQAQ 209 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHH-HHHH
Confidence 34455667778899999999999999999999999999999999999999999877654 344333322222 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039 128 VTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
+.-..++... ......-++...+|++.+.+..++..+...|+.++|++.++
T Consensus 210 i~ll~qaa~~--~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll 260 (304)
T COG3118 210 IELLEQAAAT--PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL 260 (304)
T ss_pred HHHHHHHhcC--CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2221221100 00233444555589999999999999999999999999886
No 212
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.94 E-value=0.00015 Score=61.33 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=83.3
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD- 80 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~- 80 (206)
...|+.+-.++..|..+...|+.++|++.|++++... .+ +....-+++.+|-|+..+++|++|..+|.+..+.+.-+
T Consensus 261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk 339 (468)
T PF10300_consen 261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ-SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK 339 (468)
T ss_pred HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch-hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH
Confidence 3468888889999999999999999999999888644 32 23456778889999999999999999999988865543
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhc
Q psy1039 81 PKALFRRCQAYEAIGKF-------EEAYTDAKHIHRV 110 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 110 (206)
.-..|..|.|+..+|+. ++|.+.+.++-.+
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 33455668899999988 7777777766554
No 213
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.92 E-value=0.001 Score=60.63 Aligned_cols=162 Identities=10% Similarity=0.040 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------ 80 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------ 80 (206)
......+|..++..|++++|...+++++... |.. .........+|.++...|++++|...+.+++......
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 4455567888999999999999999999865 431 1123456789999999999999999999998764321
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--------KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD- 151 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (206)
..++..+|.++...|++++|...+++++.+.... ..+...++.+....++...+.. .+..+..
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~--------~~~~al~~ 602 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ--------CARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH--------HHHHhHHh
Confidence 2456788999999999999999999988863221 1223345555656666655433 3333322
Q ss_pred -----CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 152 -----TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 152 -----~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+..........+.++...|+++.|...+
T Consensus 603 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l 635 (903)
T PRK04841 603 LSNYQPQQQLQCLAMLAKISLARGDLDNARRYL 635 (903)
T ss_pred hhccCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1122333445677778888887776655
No 214
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.91 E-value=2.2e-05 Score=40.91 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
++|+.+|.++..+|++++|...|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999954
No 215
>KOG3081|consensus
Probab=97.87 E-value=0.0016 Score=50.08 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-----------c-------------HHHHHHHHHHHHHHHHc---
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-----------S-------------HERATCLKNRAAVYLKQ--- 60 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-----------~-------------~~~~~~~~~la~~~~~~--- 60 (206)
+....-.-|.++.+.|++++|+........+. -. + ...-..+..+|.++.+.
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE-~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLGENLE-AAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc
Confidence 34455666788888899999887766522221 00 0 00111223344433332
Q ss_pred -cCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 61 -NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 61 -~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
+++.+|.-+|+..-.--|..+......+.|+..+|+|++|...++.++..++++++...++..+-...|
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLG 255 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 235555555555555455555555555566666666666666666666666665555555544444433
No 216
>KOG0551|consensus
Probab=97.83 E-value=0.00046 Score=54.59 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (206)
Q Consensus 45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 120 (206)
..+..+-.-|.-|++.++|..|+..|.++|..+-.+ .-.|.++|-|...+|+|..|+..+.+++.++|.+..+...
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 467778889999999999999999999999875443 4468899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHH
Q psy1039 121 LSRLFAIVTKRMQEN 135 (206)
Q Consensus 121 l~~~~~~~~~~~~~~ 135 (206)
-+.+...++....+.
T Consensus 159 ~Akc~~eLe~~~~a~ 173 (390)
T KOG0551|consen 159 GAKCLLELERFAEAV 173 (390)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888888866643
No 217
>KOG1915|consensus
Probab=97.80 E-value=0.0035 Score=52.10 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la 88 (206)
+..|...+....++.+...|-..+-.|+-.+ |. ..++...-..-.++++++.+...|++-++..|.+..+|...|
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~c-PK----~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKC-PK----DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccC-Cc----hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 3444444555555555555555555555555 53 233333333444555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q psy1039 89 QAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~al~~ 110 (206)
..-..+|+.+.|...|+-|+..
T Consensus 479 ElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcC
Confidence 5555555555555555555543
No 218
>KOG3824|consensus
Probab=97.80 E-value=0.00087 Score=52.74 Aligned_cols=86 Identities=17% Similarity=0.118 Sum_probs=71.5
Q ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039 41 EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (206)
Q Consensus 41 p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 120 (206)
|.....+..-.+.|.-..+.|+.++|...|+.|+.+.|++++++...|.....-.+.-+|-.+|-+++.++|.|.++..+
T Consensus 110 pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 110 PAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred chhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 43334455566667777789999999999999999999999999999999988899999999999999999999888777
Q ss_pred HHHHHH
Q psy1039 121 LSRLFA 126 (206)
Q Consensus 121 l~~~~~ 126 (206)
..+-.-
T Consensus 190 R~RT~p 195 (472)
T KOG3824|consen 190 RARTTP 195 (472)
T ss_pred hhccch
Confidence 655443
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.79 E-value=0.0025 Score=53.94 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=85.0
Q ss_pred cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----HHHHHHHHHHHHHcCCH
Q psy1039 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKALFRRCQAYEAIGKF 97 (206)
Q Consensus 22 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~la~~~~~~g~~ 97 (206)
..+.+.|.+.+....... |+ +...++..|..+...|+.++|++.|++++...... .-+++.+|.++..+++|
T Consensus 246 ~~~~~~a~~lL~~~~~~y-P~---s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w 321 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY-PN---SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW 321 (468)
T ss_pred CCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH
Confidence 457788999999999999 99 88889999999999999999999999988544332 34688899999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHH-HHHHHHHHH
Q psy1039 98 EEAYTDAKHIHRVEPTNKAIQPVLS-RLFAIVTKR 131 (206)
Q Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~ 131 (206)
++|..++.+..+.+.-+......+. -++..+++.
T Consensus 322 ~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 322 EEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 9999999999997776555444443 333344433
No 220
>KOG0376|consensus
Probab=97.78 E-value=6.5e-05 Score=61.88 Aligned_cols=110 Identities=19% Similarity=0.086 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 128 (206)
..-+-+.-.+.-+.|+.|+..|.+|++++|+....+-+++.++...++|..|+..+.++++++|........-+.....+
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34456677788899999999999999999999999999999999999999999999999999999988888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhh
Q psy1039 129 TKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL 166 (206)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 166 (206)
+...++-. .|+.... .|.+...+....+|-
T Consensus 86 ~~~~~A~~--------~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALL--------DLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHH--------HHHHhhhcCcCcHHHHHHHHHHH
Confidence 77777333 4444444 566666555555443
No 221
>KOG4507|consensus
Probab=97.78 E-value=6.5e-05 Score=63.41 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=94.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHc
Q psy1039 15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAI 94 (206)
Q Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~ 94 (206)
.|......|+...|+.++..|+... |.. ......++|..+.+.|-.-.|-..+.+++.++..-+-.++.+|..+..+
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~-p~~--~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLA-PLQ--QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccC-hhh--hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 3444445899999999999999998 852 4556889999999999999999999999999988888899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 95 GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 95 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
.+.+.|++.|+.++.++|+++.....+..+.
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 9999999999999999999999988876553
No 222
>KOG3081|consensus
Probab=97.76 E-value=0.0015 Score=50.22 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039 10 NKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (206)
Q Consensus 10 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 85 (206)
..+.+++..+.+ .+.+++|.-+|+...+-. |. +.....+.+.|++.+|+|++|...++.++.-++.+++++.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~---T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PP---TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CC---ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 344555554443 457889999999988854 33 5888899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHH-HHHHHHHHhcCCCChhH
Q psy1039 86 RRCQAYEAIGKFEEA-YTDAKHIHRVEPTNKAI 117 (206)
Q Consensus 86 ~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~ 117 (206)
++-.+-..+|.-.++ .+.+.+....+|+++-+
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 999999999988665 45567777778887654
No 223
>KOG1070|consensus
Probab=97.75 E-value=0.0017 Score=60.00 Aligned_cols=129 Identities=16% Similarity=0.074 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--CHHHHHHHH
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DPKALFRRC 88 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~la 88 (206)
.+..+.-+|-..+.+++|.++|+..++.. .+ ....|...|..+++.++-+.|...+.+|++--|. +.+..-..|
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q---~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQ---TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cc---hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 34445556666666777777777776666 54 5666777777777777777777777777776665 556666667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..-++.|+.+.+...|+-.+.-+|.-.+.|..+.+.....++... +..+|++++.
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~--------vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKY--------VRDLFERVIE 1662 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHH--------HHHHHHHHHh
Confidence 777777777777777777777777777777666665554444333 5557777766
No 224
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.74 E-value=6.2e-05 Score=38.76 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
+++++|.++...|++++|...|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666655
No 225
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.73 E-value=0.006 Score=46.84 Aligned_cols=128 Identities=12% Similarity=0.169 Sum_probs=100.4
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHhhh
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ--------NDKVIEDCSKSLEI 76 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~l 76 (206)
+|-..++...++-.+++.++|++|+...++-+.+. |+++.-.-+++.+|.+++..-+ -..|+..|...+..
T Consensus 67 s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r 145 (254)
T COG4105 67 SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR 145 (254)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH
Confidence 34457788999999999999999999999999999 9866677888999999876532 45888999999999
Q ss_pred CCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH---HHHHHHHHHHHH
Q psy1039 77 VPDDPKA-----------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL---SRLFAIVTKRMQ 133 (206)
Q Consensus 77 ~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---~~~~~~~~~~~~ 133 (206)
.|++.-+ =...|.-|.+.|.|-.|+.-++.+++..|+.+.....+ ..++..++-...
T Consensus 146 yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~ 222 (254)
T COG4105 146 YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDE 222 (254)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHH
Confidence 9987321 12357889999999999999999999988876555554 444445554444
No 226
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.73 E-value=0.0035 Score=57.26 Aligned_cols=169 Identities=11% Similarity=-0.044 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH-
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP- 81 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~- 81 (206)
+......+..++..|++++|...+..+.... +. ..........+|.++...|++++|...+++++...|...
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQEL-KDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY 487 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhc-cccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence 3345667888899999999999999887653 21 122345566688899999999999999999998655432
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 82 ----KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 82 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
.+...+|.++...|++++|...+++++....... .....++.++...++...+.....+ +....+....
T Consensus 488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~-al~~~~~~~~ 566 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEK-AFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHhcc
Confidence 3567789999999999999999999987644321 2334556666666666664432221 1112221111
Q ss_pred C--CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 152 T--SAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 152 ~--~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
. +.........+..+...|++++|...+
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 596 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCA 596 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 1 112223445677888889998887666
No 227
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.69 E-value=0.0049 Score=41.72 Aligned_cols=96 Identities=23% Similarity=0.360 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccc--cC------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh-------hhCC
Q psy1039 14 ESGNSAFKQGDYETALDFYTKALKVTA--EE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL-------EIVP 78 (206)
Q Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~--p~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-------~l~p 78 (206)
..|.--+..|-|++|...+.++++... |. ...++.++-.++.++..+|+|++++....+++ +++.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 345566778999999999999999752 21 24567778889999999999998887777766 4455
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 79 DD----PKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 79 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
+. ..+.+++|.++..+|+.++|.+.|+.+-+
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 54 44667899999999999999999988754
No 228
>KOG2610|consensus
Probab=97.69 E-value=0.0026 Score=50.73 Aligned_cols=156 Identities=10% Similarity=0.011 Sum_probs=114.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-CCCCHHHHH---HH
Q psy1039 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-VPDDPKALF---RR 87 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-~p~~~~~~~---~l 87 (206)
....+...+.+|++.+|-..+++.++-. |. +.-++..--.+++.+|+...-...+++.+-. +|+-|-.-| -.
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~-Pt---Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDY-PT---DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMY 181 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhC-ch---hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHH
Confidence 3344566778899999999999999988 97 6666666777888899999999999998866 777644333 45
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCC---hhhhHHH
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT--SAP---MDKRVTA 162 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~ 162 (206)
+.++...|-|++|.+..+++++++|.+.-+......+....++.++... +..+.-++ ... ..-.-..
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e--------FM~~ted~Wr~s~mlasHNyWH~ 253 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE--------FMYKTEDDWRQSWMLASHNYWHT 253 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH--------HHHhcccchhhhhHHHhhhhHHH
Confidence 7788999999999999999999999999999998888887777666332 44333331 111 1122335
Q ss_pred HhhhhHhcccchhhHHH
Q psy1039 163 VNNLVVLAREMSGAEML 179 (206)
Q Consensus 163 ~~~~~~~~~~~~a~~~~ 179 (206)
+.++++.+.++.|.+.|
T Consensus 254 Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 254 ALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHhhhcccchhHHHHHH
Confidence 66777777777766654
No 229
>KOG2796|consensus
Probab=97.66 E-value=0.0027 Score=48.99 Aligned_cols=125 Identities=13% Similarity=0.086 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh----hhCC--CCHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL----EIVP--DDPK 82 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~l~p--~~~~ 82 (206)
....+.+..++.-.|.|.-.+..+.+.++.+ |. ..+.+...+|...++.|+.+-|..+|+++- .++. .+.-
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e--~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-PE--QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-Cc--ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 4567788888999999999999999999988 53 167778889999999999999999999543 3332 2344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
+..+.+.++....+|.+|...+.+++..||.++.+.+..+.+...+++..++.+
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH
Confidence 666778888888999999999999999999999999999999999999888555
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0056 Score=47.93 Aligned_cols=161 Identities=11% Similarity=0.063 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC-CHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-DPKALFR 86 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~ 86 (206)
..+.-+..|......|++.+|...|..++... |+ +..+...++.||...|+.+.|...+...=.-..+ .......
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a 208 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQA 208 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cc---cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHH
Confidence 34456777889999999999999999999999 98 8899999999999999999988877652211111 1111111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhh
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNL 166 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (206)
.-..+.+.....+. ..+++.+..+|+|..+...++..+...++.+.+.. ....++++-.. ..+...+..+...+
T Consensus 209 ~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale----~Ll~~l~~d~~-~~d~~~Rk~lle~f 282 (304)
T COG3118 209 QIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALE----HLLALLRRDRG-FEDGEARKTLLELF 282 (304)
T ss_pred HHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHhccc-ccCcHHHHHHHHHH
Confidence 12333444443333 34566677889998888888888887777666432 23334444333 44556666666666
Q ss_pred hHhcccchhhHH
Q psy1039 167 VVLAREMSGAEM 178 (206)
Q Consensus 167 ~~~~~~~~a~~~ 178 (206)
--.|.-+-....
T Consensus 283 ~~~g~~Dp~~~~ 294 (304)
T COG3118 283 EAFGPADPLVLA 294 (304)
T ss_pred HhcCCCCHHHHH
Confidence 666654433333
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.64 E-value=0.00078 Score=56.10 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=87.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc----------------------HHHHHHHHHHHHHHH
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----------------------HERATCLKNRAAVYL 58 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~----------------------~~~~~~~~~la~~~~ 58 (206)
||+.+|+-+.++..++.... ....+|..+|+++++..+ .. .....+...+|.|..
T Consensus 194 ALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE-~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCar 270 (539)
T PF04184_consen 194 ALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGE-ASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCAR 270 (539)
T ss_pred HHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHH-HhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHH
Confidence 45667777777776665422 235677788888777552 10 012345677999999
Q ss_pred HccCHHHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChhHHHHHHHH
Q psy1039 59 KQNQNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV-EPTNKAIQPVLSRL 124 (206)
Q Consensus 59 ~~~~~~~A~~~~~~al~l~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~ 124 (206)
++|+..+|++.++..++.+|. +..++.++..++..++.|.++...+.+.-.+ -|++..+...-+.+
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 999999999999999988775 5678999999999999999999999887544 34555444444443
No 232
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.61 E-value=0.002 Score=41.79 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHH
Q psy1039 66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--KAIQPVLSRLFAIVTKR 131 (206)
Q Consensus 66 A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~ 131 (206)
.+..+++.+..+|++..+.+.+|..+...|++++|.+.+-.++..+++. ..+...+-.+...++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3566788889999999999999999999999999999999999988765 56666666666666653
No 233
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.60 E-value=0.0026 Score=46.65 Aligned_cols=102 Identities=19% Similarity=0.063 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--CCCHHHH--
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PDDPKAL-- 84 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p~~~~~~-- 84 (206)
-.++..+|..|.+.|+++.|++.|.++.+.. .........++++-.+.+..++|.....+..++-.+- +.++...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4678899999999999999999999998877 5544567788888888899999999999999887553 3344333
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1039 85 --FRRCQAYEAIGKFEEAYTDAKHIHRVE 111 (206)
Q Consensus 85 --~~la~~~~~~g~~~~A~~~~~~al~~~ 111 (206)
...|..+...++|..|...|-.+....
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 234778888999999999887665443
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.58 E-value=0.01 Score=41.86 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=72.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----------------------PKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
+...|......++...++..+.+++.+-... ..+...++..+...|++++|...++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3444656667788889999999988774211 234666788899999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 108 HRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 108 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
+..+|.+..++..+..++...++...+...+. .+...+..-++
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~-~~~~~l~~elg 131 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYE-RYRRRLREELG 131 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHH-HHHHHHHHHHS
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHH-HHHHHHHHHhC
Confidence 99999999999999999999999888666333 33344444334
No 235
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.58 E-value=0.0026 Score=53.10 Aligned_cols=139 Identities=14% Similarity=0.043 Sum_probs=100.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--------------
Q psy1039 14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-------------- 79 (206)
Q Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-------------- 79 (206)
..-....+..+.+.-++.-.+|++++ |+ .+.+|..+|.- ...-..+|...|+++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~-pd---CAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN-PD---CADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh-hh---hhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence 44455677889999999999999999 98 78888877753 233456677777666644210
Q ss_pred -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 80 -----------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF 146 (206)
Q Consensus 80 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (206)
...+..++|.|..++|+.++|++.++..++..|. +..++.++..++..++...+... .+
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~--------lL 318 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA--------LL 318 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH--------HH
Confidence 0335678999999999999999999999988775 57789999999988888877443 44
Q ss_pred HHhcC--CCCChhhhHHHHhhh
Q psy1039 147 KYVFD--TSAPMDKRVTAVNNL 166 (206)
Q Consensus 147 ~~~~~--~~~~~~~~~~~~~~~ 166 (206)
.+--+ .|....+....+-..
T Consensus 319 ~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 319 AKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHhccccCCchHHHHHHHHHHH
Confidence 44322 255666666654443
No 236
>KOG2471|consensus
Probab=97.57 E-value=0.00033 Score=58.09 Aligned_cols=127 Identities=11% Similarity=0.047 Sum_probs=100.5
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh----
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-----HERATCLKNRAAVYLKQNQNDKVIEDCSKSLE---- 75 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---- 75 (206)
..+.+.+++..+..++..|+|.+|.+.+...--...|.. -.....|.++|.+++.+|.|.-+.-+|.+|++
T Consensus 236 a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 236 AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999887655322110210 01233467899999999999999999999996
Q ss_pred -----hCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039 76 -----IVP---------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (206)
Q Consensus 76 -----l~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 131 (206)
+.| ......|+.|..+...|+.-.|.++|.++......+|.+|..++++.....+.
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~ 385 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQK 385 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 122 23567999999999999999999999999999999999999999998765543
No 237
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.56 E-value=0.00052 Score=39.70 Aligned_cols=41 Identities=29% Similarity=0.320 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (206)
Q Consensus 48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la 88 (206)
++++.+|..++++|+|.+|..+++.+++++|+|..+.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 35778899999999999999999999999999987755443
No 238
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.55 E-value=0.0015 Score=59.29 Aligned_cols=114 Identities=13% Similarity=0.162 Sum_probs=93.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-------QNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
...+++....|++|+..|++...-. |.+...-++.+..|.+....- .+.+|+.-|++ +.--|.-+--|..+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 558 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESF-PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGK 558 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcC-CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhH
Confidence 3467788889999999999999999 987778889999999886652 47777777776 33456667779999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 130 (206)
|.+|..+|+|++-++++..+++..|++|.+...-..+-.++.+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887666555555544
No 239
>KOG2047|consensus
Probab=97.54 E-value=0.0051 Score=52.89 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=126.6
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC-
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP- 78 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p- 78 (206)
|.++|++.+.|..+-. +..|+..+-+..|..|+..-+|.. .-...+|...|..|...|+.+.|...|+++.+.+=
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 6789999999987655 457889999999999998643531 12567899999999999999999999999998763
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------hHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy1039 79 ---DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---------AIQPVLS---RLFAIVTKRMQENEQLQNKVH 143 (206)
Q Consensus 79 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~l~---~~~~~~~~~~~~~~~~~~~~~ 143 (206)
+...+|..-|..-....+++.|.+..+++... |..+ ++...+- .+....-+.++..+. -...+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt-festk 497 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT-FESTK 497 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc-HHHHH
Confidence 33678888999999999999999999998764 3221 1111111 111222223332221 12356
Q ss_pred HHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLK 181 (206)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 181 (206)
..|++.++ .-...++....|..+-+..-++++.+.|-|
T Consensus 498 ~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 78888888 456777788888888888888888887743
No 240
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.53 E-value=0.00019 Score=36.86 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD 79 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 79 (206)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455666666666666666666666655554
No 241
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.53 E-value=0.0024 Score=42.63 Aligned_cols=95 Identities=18% Similarity=0.260 Sum_probs=72.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC-----------HHHHHHHHHHHhhhCCCCHHH
Q psy1039 15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-----------NDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~~ 83 (206)
.+..++.+||+-+|++..+..+... ++.......+..-|..++.+.. +--+++.|.++..+.|..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h-~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH-GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc-cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 4678999999999999999999988 6521122455556776655542 346788888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
++.+|.-+-....|++++.-.++++.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 888887777777788888888888765
No 242
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0071 Score=47.75 Aligned_cols=123 Identities=3% Similarity=-0.145 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA-IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
+|..+.....+.+..+.|...|.+|++-.+....+|...|..-+. .++.+.|.+.|+++++..|.+...+.........
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455666666777779999999999997777789999999999777 5666669999999999999999998888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-CCC---hhhhHHHHhhhhHhcccchhhHHH
Q psy1039 128 VTKRMQENEQLQNKVHNMFKYVFDT-SAP---MDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+++... +..+|++++.. +.+ ..++....+.-...|+.+...+..
T Consensus 83 ~~d~~~--------aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 83 LNDINN--------ARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp TT-HHH--------HHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred hCcHHH--------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 665555 77799999993 332 357777777777778666555444
No 243
>KOG0545|consensus
Probab=97.50 E-value=0.0034 Score=47.93 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--------VPDD----------PKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
....+...|.-+++.|+|.+|...|+.|+.. .|.. ...+.+.+.|+...|+|-++++.+..+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 5667889999999999999999999998743 4544 345888999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 108 HRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 108 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
+..+|+|..+...-+..+...=+..+ +..-|.+++.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~e--------A~~D~~~vL~ 292 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAE--------AKADLQKVLE 292 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHH--------HHHHHHHHHh
Confidence 99999999998888777665444444 3345666666
No 244
>KOG2610|consensus
Probab=97.49 E-value=0.0014 Score=52.13 Aligned_cols=105 Identities=15% Similarity=0.055 Sum_probs=88.3
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV-TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
|...|.+--++..--..++..|+...-...+++.+-. + |+.|-..-..-..+-++...|-|++|.+..++++++||.+
T Consensus 130 L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn-~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D 208 (491)
T KOG2610|consen 130 LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN-ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD 208 (491)
T ss_pred HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC-CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc
Confidence 4556778888888888999999999999999999887 5 6533345555567888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
..+...++.++.-.|++.++++...+-
T Consensus 209 ~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 209 CWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 999999999999999999998876543
No 245
>KOG1941|consensus
Probab=97.49 E-value=0.0011 Score=53.32 Aligned_cols=126 Identities=13% Similarity=0.185 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC----CCH--
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP----DDP-- 81 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p----~~~-- 81 (206)
.....+|+.+...+.+++++++|+.|++... .++.....++..+|..+-.+.++++|+-+..+|..+-. +++
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 4556688888888899999999999888651 12222344566777777777777777777777665532 222
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCh----hHHHHHHHHHHHHHHHHHHH
Q psy1039 82 ----KALFRRCQAYEAIGKFEEAYTDAKHIHRVE--PTNK----AIQPVLSRLFAIVTKRMQEN 135 (206)
Q Consensus 82 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~~~~l~~~~~~~~~~~~~~ 135 (206)
-+.|.++.++..+|..-+|.++++.+.++. ..|. .-...++.++...++.+.+-
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence 245566777777777777777777666542 2222 22334555555555544433
No 246
>KOG0546|consensus
Probab=97.49 E-value=0.00038 Score=55.42 Aligned_cols=125 Identities=30% Similarity=0.355 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cC-------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTA--EE-------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~-------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
+...+.|+..++.++|..|..-|.++.+... |. .......+.+++.+-++.+.+..|+.....++
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence 4455678889999999999999998887542 10 01234457778999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHH
Q psy1039 75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE 134 (206)
Q Consensus 75 ~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 134 (206)
+.++...+++++++..+..+.++++|.+.++.+....|++..+...+........+....
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~ 362 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRK 362 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888777666665543
No 247
>PRK10941 hypothetical protein; Provisional
Probab=97.47 E-value=0.0016 Score=50.87 Aligned_cols=75 Identities=21% Similarity=0.281 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
.+.++=..+.+.++++.|+.+.+..+.+. |+ ++.-+..+|.+|.++|.+..|..+++.-++..|+++.+-.-+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 45566778899999999999999999999 99 78888999999999999999999999999999999887655443
No 248
>KOG4507|consensus
Probab=97.45 E-value=0.002 Score=54.77 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=90.4
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 11 KLKESGNSAFK-QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 11 ~~~~~g~~~~~-~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
.+..++..|.+ +|+..+|+.|+..++-.. |.. ....++..+|..+.++|...+|--.+..|+.--|.....++-+|.
T Consensus 214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~-~~h-~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~ 291 (886)
T KOG4507|consen 214 VLHNMASFYWRIKGEPYQAVECAMRALHFS-SRH-NKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGN 291 (886)
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHhhhC-Ccc-cccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHH
Confidence 45566666665 899999999999999988 641 134567889999999999999999998888888888888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039 90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (206)
Q Consensus 90 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 120 (206)
++..+|.+.....+|..+.+.+|........
T Consensus 292 i~aml~~~N~S~~~ydha~k~~p~f~q~~~q 322 (886)
T KOG4507|consen 292 IYAMLGEYNHSVLCYDHALQARPGFEQAIKQ 322 (886)
T ss_pred HHHHHhhhhhhhhhhhhhhccCcchhHHHHH
Confidence 9999999999999999999999976544333
No 249
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.44 E-value=0.022 Score=40.83 Aligned_cols=112 Identities=14% Similarity=0.025 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
-...+.....+....++.+++...+...--+. |+ ....-..-|..+...|+|.+|+..++.+..-.|..+.+.-.+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-P~---~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLR-PE---FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CC---chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 34567788888899999999999999888888 98 888888999999999999999999999999899999888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
+.|+..+|+..= ..+-..+++..+ ++.+......+.
T Consensus 85 A~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 85 ALCLYALGDPSW-RRYADEVLESGA-DPDARALVRALL 120 (160)
T ss_pred HHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 999999998621 112233444433 555555544443
No 250
>KOG1586|consensus
Probab=97.44 E-value=0.0065 Score=46.09 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc---HHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhhCC------
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQ-NQNDKVIEDCSKSLEIVP------ 78 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~---~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~l~p------ 78 (206)
+-.-|-.+--.++.++.++|+.++++++++. .+. .+-+..+..+|..|..- .++++|+.+|+++-+...
T Consensus 73 aat~YveA~~cykk~~~~eAv~cL~~aieIy-t~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIY-TDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHH-HhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 3344444444556667888888888888876 431 12333455677777654 678888888887765532
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 115 (206)
.-.+++...|..-..+++|.+|+..|+++....-+|+
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 2235666677777788888888888888777665554
No 251
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.44 E-value=0.0054 Score=50.26 Aligned_cols=98 Identities=16% Similarity=0.281 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEE---------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 75 (206)
+-...|...++.|+|..|..-|.-++++. .. ......+-..+..||+++++.+-|+....+.+-
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelc-skg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELC-SKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH-hhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 33445667778888888888888888776 32 123445567799999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 76 l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
++|.....+++.|.|...+.+|.+|.+.+--+.-
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887655443
No 252
>KOG1585|consensus
Probab=97.43 E-value=0.0084 Score=45.83 Aligned_cols=133 Identities=13% Similarity=0.114 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hh
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KA 116 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 116 (206)
-+..|..-+.+|...++|++|...+.++.+-...| .+++-..|.....+..+.+++..++++..+.-.+ ..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 45556666666666666766666666666433222 2344455566666666667777766666543222 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC--CC----hhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039 117 IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS--AP----MDKRVTAVNNLVVLAREMSGAEMLLKSGV 184 (206)
Q Consensus 117 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 184 (206)
+...+......+++..- . .+.++|++++. .. +. .+..-..++.|....++.+|...+.|+..
T Consensus 110 AAmaleKAak~lenv~P-d-----~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKP-D-----DALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGV 178 (308)
T ss_pred HHHHHHHHHHHhhcCCH-H-----HHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhh
Confidence 22333333333222111 1 14455555554 11 11 22233456777777888888888877766
No 253
>KOG1941|consensus
Probab=97.42 E-value=0.0083 Score=48.40 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-----
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV----- 77 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~----- 77 (206)
...-.+|..|-...++++|+-+..+|.++. .+ ..+...+++.++.++..+|+.-.|.++++++.++.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv-~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELV-NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHH-HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 355678999999999999999999998875 32 24456778899999999999999999999998763
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1039 78 -PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111 (206)
Q Consensus 78 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 111 (206)
|.......-+|.+|...|+.+.|..-|+.++..-
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 3346677888999999999999999999988753
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.40 E-value=0.00038 Score=36.83 Aligned_cols=26 Identities=42% Similarity=0.750 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 12 LKESGNSAFKQGDYETALDFYTKALK 37 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~~~al~ 37 (206)
+..+|.++...|+|++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555443
No 255
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.36 E-value=0.00037 Score=36.90 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIH 108 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al 108 (206)
+.++|.+|...|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 256
>KOG1585|consensus
Probab=97.36 E-value=0.04 Score=42.24 Aligned_cols=127 Identities=16% Similarity=0.109 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-----CCC
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-----PDD 80 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-----p~~ 80 (206)
+..+...+..|...++|++|..++.+|++.. .+ .-.-+..+...|...-.+..+.++...|+++..+. |+-
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 4455666677777889999999999999654 22 11245567777778888899999999999998773 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHHHHHHHHHH
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK------AIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~ 136 (206)
...-..+|--....-+.++|+..|++++.+-..+. +.....++++.+++...++..
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 44455566666777889999999999988654432 233344555556665555443
No 257
>KOG3364|consensus
Probab=97.36 E-value=0.011 Score=41.05 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHhh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQ---NDKVIEDCSKSLE-IVPD-DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~-l~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 120 (206)
+....++++-++....+ ..+.+..++..++ -.|+ ..++.|.+|..++++++|+.+.++....++.+|+|+.+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 46778888888877754 6688889998886 5554 46788999999999999999999999999999999998776
Q ss_pred HHHHHHHHH
Q psy1039 121 LSRLFAIVT 129 (206)
Q Consensus 121 l~~~~~~~~ 129 (206)
-..+...+.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 665555444
No 258
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.33 E-value=0.00043 Score=34.47 Aligned_cols=29 Identities=38% Similarity=0.527 Sum_probs=13.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCC
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVP 78 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p 78 (206)
+..+|.++..+|++++|+..++++++++|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444444444444444444444
No 259
>KOG2396|consensus
Probab=97.33 E-value=0.0091 Score=49.91 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=80.2
Q ss_pred HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q psy1039 28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEAYTDAKH 106 (206)
Q Consensus 28 A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~ 106 (206)
-...|+.|+... +. +..+|.+...-.-+.+.+.+--..|.+++..+|++++.|..-|.=.+..+. .+.|...+.+
T Consensus 90 Iv~lyr~at~rf-~~---D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 90 IVFLYRRATNRF-NG---DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHhc-CC---CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 345688888888 76 688888876665666669999999999999999999999999987777776 9999999999
Q ss_pred HHhcCCCChhHHHHHHHHHH
Q psy1039 107 IHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 107 al~~~p~~~~~~~~l~~~~~ 126 (206)
++..+|++|.++...-++..
T Consensus 166 gLR~npdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFRMEL 185 (568)
T ss_pred HhhcCCCChHHHHHHHHHHH
Confidence 99999999999888766654
No 260
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.31 E-value=0.00051 Score=34.19 Aligned_cols=33 Identities=27% Similarity=0.516 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
.+++.+|.++..+|++++|...+++++..+|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578899999999999999999999999998863
No 261
>KOG1070|consensus
Probab=97.31 E-value=0.021 Score=53.17 Aligned_cols=162 Identities=13% Similarity=0.016 Sum_probs=110.9
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc----------------------------------HHHHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----------------------------------HERAT 48 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~----------------------------------~~~~~ 48 (206)
..+|+.+..|.+.=..++..++.++|.+..++|+..-.+.- -....
T Consensus 1452 rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~ 1531 (1710)
T KOG1070|consen 1452 RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYT 1531 (1710)
T ss_pred hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHH
Confidence 45677777777777777777888888777777777531210 00233
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHH
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFA 126 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~ 126 (206)
.+..|...|.+.+++++|.+.++..++-.-.....|...|..++...+-+.|...+.+|+..-|. |.......+.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 45566777777788888888888877776677778888888888888888888888888888776 5666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhccc
Q psy1039 127 IVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLARE 172 (206)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (206)
..++.++ -..+|...+. .|...+.|.-+...-+.++..
T Consensus 1612 k~GDaeR--------GRtlfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1612 KYGDAER--------GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred hcCCchh--------hHHHHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence 6666555 3336655555 677777776666655555443
No 262
>KOG1308|consensus
Probab=97.27 E-value=0.00019 Score=56.94 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=72.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH
Q psy1039 53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132 (206)
Q Consensus 53 la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 132 (206)
-+.-.+..|.++.|++.|..+++++|.....|-.+|.++..++....|+..|..++.++|+...-....+.....++...
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 33444567889999999999999999999999999999999999999999999999999998877777777777777776
Q ss_pred HHHH
Q psy1039 133 QENE 136 (206)
Q Consensus 133 ~~~~ 136 (206)
.+..
T Consensus 200 ~aa~ 203 (377)
T KOG1308|consen 200 EAAH 203 (377)
T ss_pred HHHH
Confidence 6554
No 263
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.20 E-value=0.00068 Score=51.10 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=33.6
Q ss_pred HHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 19 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
....|+.+.|.+.|.+++.+. |+ -...|+.+|....+.|+++.|...|++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-ch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555556666666655 55 55555666666556666666666666666665544
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.20 E-value=0.042 Score=44.92 Aligned_cols=167 Identities=11% Similarity=0.040 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHH---ccCHHHHHHHHHH-HhhhCCCCHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLK---QNQNDKVIEDCSK-SLEIVPDDPK 82 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~l~p~~~~ 82 (206)
+....++=..|....+|+.-+...+..-.+ |+. .....+.+..|-++.+ .|+.++|+..+.. .....+.+++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~--p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL--PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc--CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 344555556778888999988888876665 211 1156677888999988 8999999999999 4566678899
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Q psy1039 83 ALFRRCQAYEAI---------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVH----NMFKYV 149 (206)
Q Consensus 83 ~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 149 (206)
.+..+|.+|..+ ...++|+..|.++.+++|+. ....++..+....+.......+..+ +. .+..+-
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~-i~~~l~~llg~k 296 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRK-IGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHH-HHHHHHHHHHhh
Confidence 999999988664 34788999999999999754 3333333443333332221111111 21 111111
Q ss_pred cCCCCChhhhH--HHHhhhhHhcccchhhHHH
Q psy1039 150 FDTSAPMDKRV--TAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 150 ~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~ 179 (206)
-..+....+|. ..+++.+-.|+.++|...+
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~ 328 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAA 328 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11234455553 3566666667775554444
No 265
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.15 E-value=0.1 Score=42.73 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY--LKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
+-.....+...+-.|+|++|.+-|+..+. + |+ ...+-.+|..+ ...|..+-|+.+..++-..-|..+.++..
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-d-PE----tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~A 193 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-D-PE----TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARA 193 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-C-hH----HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHH
Confidence 34556677888889999999999998776 5 75 44444444443 56799999999999999999999999998
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA--IVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (206)
.=...+..|+|+.|++..+......--.+.......-+.. +-...-.... ..+...-..+.. .|+-...-...+
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp---~~Ar~~A~~a~KL~pdlvPaav~AA 270 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP---ASARDDALEANKLAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHhhcCCccchHHHHHH
Confidence 8889999999999999987665532212212111111111 1111111110 012233333333 466667778888
Q ss_pred hhhhHhcccchhhHHH
Q psy1039 164 NNLVVLAREMSGAEML 179 (206)
Q Consensus 164 ~~~~~~~~~~~a~~~~ 179 (206)
..|+..|+..++...+
T Consensus 271 ralf~d~~~rKg~~il 286 (531)
T COG3898 271 RALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHhccchhhhhhHH
Confidence 8888888876665555
No 266
>KOG3824|consensus
Probab=97.15 E-value=0.0022 Score=50.50 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~ 90 (206)
.-...+.-..+.|+.++|...|+.|+.+. |+ ++.++...|......++.-+|-.+|-+|+.+.|.+.+++.+++..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlala-P~---~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALA-PT---NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcC-CC---CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 33455566778999999999999999999 99 999999999999888999999999999999999999998887654
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.08 E-value=0.097 Score=42.23 Aligned_cols=127 Identities=12% Similarity=0.116 Sum_probs=99.3
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh--CCC--
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--VPD-- 79 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--~p~-- 79 (206)
....+..|...+....+.|+++.|...+.++.... +.. ...+.+.+..+..++..|+..+|+..++..+.. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~-~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLN-PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC-CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 44667889999999999999999999999998865 321 114567788999999999999999999888771 110
Q ss_pred ------------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039 80 ------------------------------DPKALFRRCQAYEAI------GKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (206)
Q Consensus 80 ------------------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 123 (206)
..++++.+|.-.... ++++++...|..+..++|+...++...+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 134566677666666 88899999999999999999888888887
Q ss_pred HHHHHHHHH
Q psy1039 124 LFAIVTKRM 132 (206)
Q Consensus 124 ~~~~~~~~~ 132 (206)
....+-...
T Consensus 301 ~~~~~~~~~ 309 (352)
T PF02259_consen 301 FNDKLLESD 309 (352)
T ss_pred HHHHHHHhh
Confidence 776654433
No 268
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.0096 Score=46.17 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (206)
Q Consensus 45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 124 (206)
.-.....++=..+...++++.|.....+.+.++|.++.-+.-.|.+|.++|.+..|.+.++..++..|+.+.+...-..+
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34556667777888999999999999999999999999999999999999999999999999999999998876555444
Q ss_pred H
Q psy1039 125 F 125 (206)
Q Consensus 125 ~ 125 (206)
.
T Consensus 259 ~ 259 (269)
T COG2912 259 L 259 (269)
T ss_pred H
Confidence 3
No 269
>KOG4814|consensus
Probab=97.03 E-value=0.014 Score=50.21 Aligned_cols=100 Identities=25% Similarity=0.270 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
..+++.+..+|+..+|..++++|...+.-. |+. ...+....+++.||..+.+.+.|.+++.+|-+.+|.++-.-+.
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i-~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDI-ISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 467788899999999999999999999987 652 2347788899999999999999999999999999999988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
.-.+....|.-++|..+..+....
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 888888899999999888776654
No 270
>KOG2471|consensus
Probab=97.02 E-value=0.0008 Score=55.91 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-ccc-------cC------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALK-VTA-------EE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~~-------p~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 73 (206)
....|.++|.+++..|.|..++.+|.+|++ .+. |. ...+..+.++.|..|...|+.-.|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 456788999999999999999999999996 110 21 1225778999999999999999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHH
Q psy1039 74 LEIVPDDPKALFRRCQAYEA 93 (206)
Q Consensus 74 l~l~p~~~~~~~~la~~~~~ 93 (206)
....-.+|..|.++|.|-+.
T Consensus 362 v~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999988654
No 271
>KOG2047|consensus
Probab=97.00 E-value=0.2 Score=43.51 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 75 (206)
...|...|..|-..|+.+.|-..|++++...-+.-...+..|..-|..-+...+++.|+...++|..
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 3455666666666666666666666666653222111344455555555555555555555555443
No 272
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.87 E-value=0.046 Score=41.38 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=70.0
Q ss_pred HHHcCCHHHHHHHHHHHHhccc---cCcHHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHhhhCCC------CHH
Q psy1039 19 AFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQ-------NDKVIEDCSKSLEIVPD------DPK 82 (206)
Q Consensus 19 ~~~~g~~~~A~~~~~~al~~~~---p~~~~~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~l~p~------~~~ 82 (206)
+-....+++|++.|.-|+-... +.....+.++..+|=+|..+|+ +..|...|.++++.... ...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3345678899998888877532 2222357778888888888888 45677777777654322 256
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
..|.+|.+..++|++++|.+.|.+++.....+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 78899999999999999999999999864443
No 273
>KOG3617|consensus
Probab=96.85 E-value=0.051 Score=48.46 Aligned_cols=179 Identities=13% Similarity=0.074 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------cccC-------cHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKV----------TAEE-------SHERATCLKNRAAVYLKQNQNDKVIEDCSK 72 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~~p~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 72 (206)
..+++.+..+-..++.+.|+++|+++-.. + |. ......+|.--|..+...|+.+.|+..|..
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~-p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY-PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC-hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 45778888888889999999998875321 1 21 122455677788888899998888888877
Q ss_pred Hhhh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCChhHHHHHHHHH
Q psy1039 73 SLEI---------------------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE------PTNKAIQPVLSRLF 125 (206)
Q Consensus 73 al~l---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~ 125 (206)
|-.- ...+..+.|.+|+.|...|++.+|+..|.++-.+. .+| +....+..+.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nla 1016 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLA 1016 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 6322 23456789999999999999999999988765432 222 2223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHHHhcch---HHHHHHHhcccCChhhhh
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV---AKQINTLLKCETNEEIYL 202 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 202 (206)
..-+..+... +..+|+.. .-........|...|-+.+|++.-|...+ .+-|-+=++-++||.+..
T Consensus 1017 l~s~~~d~v~------aArYyEe~------g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1017 LMSGGSDLVS------AARYYEEL------GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred hhcCchhHHH------HHHHHHHc------chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 2222222211 22343332 22344555667777888888888887666 566666666677777653
No 274
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.82 E-value=0.0027 Score=47.97 Aligned_cols=60 Identities=18% Similarity=0.355 Sum_probs=55.9
Q ss_pred HHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039 56 VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115 (206)
Q Consensus 56 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 115 (206)
.....++.+.|.+.|++++.+-|++...|+++|......|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445678999999999999999999999999999999999999999999999999999763
No 275
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.79 E-value=0.031 Score=36.17 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=40.7
Q ss_pred HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 28 A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
.+.-+++.+..+ |+ +....+.+|..+...|++++|++.+-.+++.++++
T Consensus 7 ~~~al~~~~a~~-P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAAN-PD---DLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHS-TT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 355678888889 98 89999999999999999999999999999988876
No 276
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.78 E-value=0.03 Score=34.98 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
.+......|.-++..++.++|+..|.++++.. ++++....++-.+..+|...|+|.+.+.+..+=+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKI-TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888999999999999999999988 7755566666777788899999999888775544
No 277
>KOG4151|consensus
Probab=96.75 E-value=0.013 Score=51.39 Aligned_cols=121 Identities=31% Similarity=0.507 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-cHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQ--NQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
.+......|+.++..+++..|.--|..++.+- |. +...+....+.+.|+..+ |+|..++..++-++...|....++
T Consensus 52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~ll-p~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L 130 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLL-PKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL 130 (748)
T ss_pred HHHHHHhhhhHHhhhhhhhccchhhhhhheec-cccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence 34566788999999999999988888888888 73 233566777888888766 589999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
+.++.+|..++.++-|++...-....+|.+.++.....+++..+.
T Consensus 131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~ 175 (748)
T KOG4151|consen 131 LKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLE 175 (748)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Confidence 999999999999999999988888899999888877766665553
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.74 E-value=0.12 Score=37.02 Aligned_cols=88 Identities=11% Similarity=0.037 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 126 (206)
...+..+..+-...++.+++...+.-.--+.|..+..-..-|.++...|+|.+|...++.+..-.|..+.....++.+..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 44556666666788899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHH
Q psy1039 127 IVTKRMQE 134 (206)
Q Consensus 127 ~~~~~~~~ 134 (206)
.+++....
T Consensus 90 ~~~D~~Wr 97 (160)
T PF09613_consen 90 ALGDPSWR 97 (160)
T ss_pred HcCChHHH
Confidence 88776653
No 279
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.71 E-value=0.0052 Score=48.52 Aligned_cols=81 Identities=12% Similarity=-0.002 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR-RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 124 (206)
++..|...+....+.|.|.+--..|.++++.+|.|.+.|.. .+.-+...++++.+...+.+++..+|++|.++...-++
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 67888888888888889999999999999999999999887 56778889999999999999999999999998876655
Q ss_pred HH
Q psy1039 125 FA 126 (206)
Q Consensus 125 ~~ 126 (206)
..
T Consensus 186 El 187 (435)
T COG5191 186 EL 187 (435)
T ss_pred HH
Confidence 43
No 280
>KOG1550|consensus
Probab=96.63 E-value=0.069 Score=46.35 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccccC-cHHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHhh
Q psy1039 7 NDYNKLKESGNSAFKQ-----GDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQN-----QNDKVIEDCSKSLE 75 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~ 75 (206)
.+..+.+.+|..++.- +|.+.|+.+|..+....+.. ....+.+.+.+|.+|.... ++..|..+|.++-.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 4566677777777754 68889999999887710000 0003446778888887743 67789999988877
Q ss_pred hCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039 76 IVPDDPKALFRRCQAYEAIG---KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD- 151 (206)
Q Consensus 76 l~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (206)
+. ++.+.+.+|.++..-. ++..|.++|..|.. -.+..+...++.++..-..... ....+..+|+++.+
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r----~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVER----NLELAFAYYKKAAEK 393 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCC----CHHHHHHHHHHHHHc
Confidence 65 4557888888887766 57789999987765 4677788888888754311111 11236678888887
Q ss_pred CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039 152 TSAPMDKRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
..............+.. ++.+.+.-.++
T Consensus 394 g~~~A~~~~~~~~~~g~-~~~~~~~~~~~ 421 (552)
T KOG1550|consen 394 GNPSAAYLLGAFYEYGV-GRYDTALALYL 421 (552)
T ss_pred cChhhHHHHHHHHHHcc-ccccHHHHHHH
Confidence 33333444444444444 66655554444
No 281
>KOG3364|consensus
Probab=96.62 E-value=0.045 Score=38.02 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-ccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 9 YNKLKESGNSAFKQGD---YETALDFYTKALK-VTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~---~~~A~~~~~~al~-~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
.+..+++++.+.+..+ ..+.+.+++..++ -. |+. .-.+.+.++..+++.++|++++.+++..++..|+|..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~-~~~--rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAH-PER--RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcC-ccc--chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4567788888887665 4568889999987 33 432 566788899999999999999999999999999998764
Q ss_pred H
Q psy1039 85 F 85 (206)
Q Consensus 85 ~ 85 (206)
-
T Consensus 109 ~ 109 (149)
T KOG3364|consen 109 E 109 (149)
T ss_pred H
Confidence 4
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.57 E-value=0.19 Score=37.21 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-DP--KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 123 (206)
......++..+...|++++|+..++.++....| +. -+-.++|.++..+|.+++|.+.+...-. +.-.+......|.
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w~~~~~elrGD 167 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccHHHHHHHHhhh
Confidence 334566888899999999999999998854333 33 3567889999999999999988765422 1112344566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1039 124 LFAIVTKRMQENEQLQNKVHNMFKYVFDT 152 (206)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
++...++... +..-|++++..
T Consensus 168 ill~kg~k~~--------Ar~ay~kAl~~ 188 (207)
T COG2976 168 ILLAKGDKQE--------ARAAYEKALES 188 (207)
T ss_pred HHHHcCchHH--------HHHHHHHHHHc
Confidence 8888787777 44577777763
No 283
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.57 E-value=0.12 Score=40.68 Aligned_cols=109 Identities=21% Similarity=0.149 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHH-HHHHHHHHHHHHHcc-------CHHHHHHHHHHH
Q psy1039 6 MNDYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHER-ATCLKNRAAVYLKQN-------QNDKVIEDCSKS 73 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~a 73 (206)
..++.+.+.+|..+.. ..++.+|..+|.++.+.. .. . ......+|.+|..-. ....|...|.++
T Consensus 106 ~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-~~---~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 106 DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-NV---EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-Ch---hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 3456788889999888 459999999999999987 22 1 233777888886641 234799999988
Q ss_pred hhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy1039 74 LEIVPDDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122 (206)
Q Consensus 74 l~l~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 122 (206)
.... ++.+.+.+|.+|.. ..++.+|...|.++-+... ......++
T Consensus 182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 8776 78899999988755 3488999999999988766 66666666
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.53 E-value=0.082 Score=42.64 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cc-c----------------------------CcHHHHHHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKV-TA-E----------------------------ESHERATCLKNRAAVY 57 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~-p----------------------------~~~~~~~~~~~la~~~ 57 (206)
.+......+..+...|+..+|+..++..+.. .. + .....+.++..+|.-.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999888881 10 0 0123455666777766
Q ss_pred HHc------cCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhcCCC
Q psy1039 58 LKQ------NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF-----------------EEAYTDAKHIHRVEPT 113 (206)
Q Consensus 58 ~~~------~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~-----------------~~A~~~~~~al~~~p~ 113 (206)
... +.+++++..|.+++.++|...++|+..|..+...-+. ..|+..|-+++...++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 666 7889999999999999999999999998776655322 3377777777777776
No 285
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.39 E-value=0.0099 Score=31.93 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l 76 (206)
.++.++|.+|..+|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34555555555555555555555555543
No 286
>KOG3617|consensus
Probab=96.35 E-value=0.32 Score=43.67 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC------------------cHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------------------SHERATCLKNRAAVYLKQNQNDKVIED 69 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~ 69 (206)
+...|.-.|..+-..|+.+.|+.+|..|-+.. .- ...+--+.+.+|..|...|++.+|+..
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f-s~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYF-SMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhh-hheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34566677888888999999999998887644 21 011344677899999999999999999
Q ss_pred HHHHhhh------CCCC--HHHHH------------HHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039 70 CSKSLEI------VPDD--PKALF------------RRCQAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (206)
Q Consensus 70 ~~~al~l------~p~~--~~~~~------------~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 128 (206)
|.+|-.. .-.| -+-+- .-|.-|...| +++.|+..|.++= .+...+.....
T Consensus 990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAG-------m~~kALelAF~-- 1060 (1416)
T KOG3617|consen 990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAG-------MIGKALELAFR-- 1060 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhc-------chHHHHHHHHh--
Confidence 9886543 2211 11111 2233344444 4455555544431 11111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039 129 TKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLK 193 (206)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (206)
.+ +-.+.++..+-+++..|.....+.+..+....+|++|.+-+..-..+....++-.
T Consensus 1061 ---tq-----Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1061 ---TQ-----QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCK 1117 (1416)
T ss_pred ---hc-----ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 1114556666677778888889999999999999998888877776666665543
No 287
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.32 E-value=0.48 Score=38.93 Aligned_cols=132 Identities=13% Similarity=0.129 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCChh
Q psy1039 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPDDPKALFRRCQAYEA---IGKFEEAYTDAKH-IHRVEPTNKA 116 (206)
Q Consensus 45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~ 116 (206)
.++....++=.+|....+|+.-+...+..-.+ -++.+...+..|.++.+ .|+.++|...+.. ...-.+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 35667778888899999999999999887766 45677888899999999 9999999999999 4455667899
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhh
Q psy1039 117 IQPVLSRLFAIVTKRM-QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGA 176 (206)
Q Consensus 117 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 176 (206)
+...+|+++..+-... ....+.-.++..+|+++.....+.-.....+..+...|......
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccch
Confidence 9999999987654331 11222344577899999996677777788888887777654333
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.31 E-value=0.12 Score=36.56 Aligned_cols=77 Identities=10% Similarity=-0.040 Sum_probs=36.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC
Q psy1039 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG 95 (206)
Q Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 95 (206)
.......++.+++...+...--+. |+ ....-..-|..+...|+|.+|+..++....-.+..+-+.-.++.|+..+|
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLr-P~---~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLR-PN---LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CC---ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 333334444444444444444444 44 44444444444455555555555555544444444444444444444444
Q ss_pred C
Q psy1039 96 K 96 (206)
Q Consensus 96 ~ 96 (206)
+
T Consensus 93 D 93 (153)
T TIGR02561 93 D 93 (153)
T ss_pred C
Confidence 4
No 289
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.30 E-value=0.39 Score=39.41 Aligned_cols=130 Identities=15% Similarity=0.046 Sum_probs=90.3
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-------------cC------------cHHHHHHHHHHHHH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-------------EE------------SHERATCLKNRAAV 56 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-------------p~------------~~~~~~~~~~la~~ 56 (206)
|..+|-+..++.+++.++...|+++.|-+..++|+-..+ +. ......+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 456899999999999999999999999999999875431 00 01223346666777
Q ss_pred HHHccCHHHHHHHHHHHhhhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C----ChhHHHHHHHHHHHHH
Q psy1039 57 YLKQNQNDKVIEDCSKSLEIVPD-DPK-ALFRRCQAYEAIGKFEEAYTDAKHIHRVEP-T----NKAIQPVLSRLFAIVT 129 (206)
Q Consensus 57 ~~~~~~~~~A~~~~~~al~l~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~~l~~~~~~~~ 129 (206)
+.+.|-+.-|.++++-.+.++|. ++- +.+.+-....+.++|+--+..++....... + -|......+.++..++
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 88999999999999999999998 654 444555556667777766666665444211 1 2345555555555555
Q ss_pred HH
Q psy1039 130 KR 131 (206)
Q Consensus 130 ~~ 131 (206)
+.
T Consensus 193 ~~ 194 (360)
T PF04910_consen 193 KE 194 (360)
T ss_pred Cc
Confidence 54
No 290
>KOG1586|consensus
Probab=96.29 E-value=0.34 Score=37.05 Aligned_cols=106 Identities=20% Similarity=0.221 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---- 80 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---- 80 (206)
+.++.+...|+.|-...+|+.|=..|.++-++.- .+....+..|..-+.|| +.++..+|+..+++++++..+-
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~ 110 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFT 110 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHH
Confidence 3455666667777778888888888888776531 12223566677777777 5569999999999999987654
Q ss_pred --HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC
Q psy1039 81 --PKALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 81 --~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~ 113 (206)
.+-+..+|.+|..- .+++.|+.+|+++-+....
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 23455788888776 8999999999998876544
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.28 E-value=0.012 Score=31.53 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVT 39 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 39 (206)
+..+.++|..+...|++++|+.++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4678999999999999999999999999875
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.27 E-value=0.41 Score=37.72 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q psy1039 10 NKLKESGNSAFKQG-DYETALDFYTKALKV 38 (206)
Q Consensus 10 ~~~~~~g~~~~~~g-~~~~A~~~~~~al~~ 38 (206)
..+|+.|...+..+ ++++|+.+++++.++
T Consensus 36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 33444444444444 444444444444444
No 293
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.14 Score=43.91 Aligned_cols=106 Identities=17% Similarity=0.075 Sum_probs=86.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HhhhCCCCHHHHHHH------
Q psy1039 15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK-SLEIVPDDPKALFRR------ 87 (206)
Q Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~l~p~~~~~~~~l------ 87 (206)
+...+...+....+......++..+ |+ +..+..++|.+....|....+...+.. +....|++......+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~-~~---~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVN-PE---NCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQL 148 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcC-cc---cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHH
Confidence 4666777888888888899999999 88 899999999998888876666666655 889999988776666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 124 (206)
|.....+|+-.++....+++..+.|.++.+...+...
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 8888888999999999999999999997666655444
No 294
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.17 E-value=0.3 Score=40.85 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccccCc-------------------------------------------H
Q psy1039 9 YNKLKESGNSAFKQGD-YETALDFYTKALKVTAEES-------------------------------------------H 44 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~~p~~-------------------------------------------~ 44 (206)
...+..-+.-+.+.|+ -++|+..++.++... |.. .
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i 457 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITI 457 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccc
Confidence 4455566777777777 667888888777766 541 0
Q ss_pred HHHHH--HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 45 ERATC--LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 45 ~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
.+..+ ...=|..++..|+|.++.-+..=..++.| ++.++..+|.|+....+|++|..++...
T Consensus 458 ~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 458 SEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 11222 22345567889999999999999999999 9999999999999999999999988654
No 295
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.16 E-value=0.14 Score=38.77 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhccc-cC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC
Q psy1039 7 NDYNKLKESGNSAFKQGD-------YETALDFYTKALKVTA-EE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~-------~~~A~~~~~~al~~~~-p~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 77 (206)
.-+..+..+|..|...|+ +..|+..|.++.+... |. ......+.+.+|....+.|++++|..+|.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 346677888888888888 4456666666666541 11 22356788999999999999999999999999765
Q ss_pred CCCH-HHHHHHHHH
Q psy1039 78 PDDP-KALFRRCQA 90 (206)
Q Consensus 78 p~~~-~~~~~la~~ 90 (206)
-.+. ..+..+|.-
T Consensus 196 ~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 196 KASKEPKLKDMARD 209 (214)
T ss_pred CCCCcHHHHHHHHH
Confidence 4333 344555543
No 296
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.14 E-value=0.19 Score=41.21 Aligned_cols=136 Identities=13% Similarity=0.178 Sum_probs=96.7
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH---HHhhhCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS---KSLEIVP 78 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~---~al~l~p 78 (206)
+++.|+..-+-..-+..++..|+..++-.+++.+.+.. |+ +. ++..|....--+-++.-++ +.-.+.|
T Consensus 256 ~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e-PH----P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~ 326 (531)
T COG3898 256 NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE-PH----PD----IALLYVRARSGDTALDRLKRAKKLESLKP 326 (531)
T ss_pred hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC-CC----hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCc
Confidence 45667777777778899999999999999999999999 86 33 3334444333333444443 4457789
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV-TKRMQENEQLQNKVHNMFKYVFDTSAP 155 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
+|....+..+.+-+.-|+|..|...-+.+....|... +...+..+...- ++..+ +.++..++...|.+
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~--------vR~wlAqav~APrd 395 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGK--------VRQWLAQAVKAPRD 395 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHH--------HHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999888754 334444444322 33333 66777777764444
No 297
>KOG0530|consensus
Probab=96.07 E-value=0.083 Score=40.95 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=43.7
Q ss_pred HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHH-
Q psy1039 21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE- 98 (206)
Q Consensus 21 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~- 98 (206)
+...-..|+..-..+|+++ |. +...|..+-.++..++ +..+-++++.+.++-+|.|..+|..+-.+...+|+..
T Consensus 55 ~~E~S~RAl~LT~d~i~lN-pA---nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLN-PA---NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred ccccCHHHHHHHHHHHHhC-cc---cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 3334445555555555555 54 4444444444443333 3444444445555555555555444444444444443
Q ss_pred HHHHHHHHHHhcCCCChhHH
Q psy1039 99 EAYTDAKHIHRVEPTNKAIQ 118 (206)
Q Consensus 99 ~A~~~~~~al~~~p~~~~~~ 118 (206)
.-....+.++..+..|--++
T Consensus 131 rELef~~~~l~~DaKNYHaW 150 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAW 150 (318)
T ss_pred chHHHHHHHHhccccchhhh
Confidence 33444444444444443333
No 298
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.96 E-value=0.04 Score=43.04 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 66 A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
|..+|.+|+.+.|++..+|+.+|.+....|+.=+|+-+|-|++...-..+.+..++..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555554433334444444444443
No 299
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.86 E-value=0.058 Score=35.10 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=27.9
Q ss_pred HHHcCCHHHHHHHHHHHHhccccCc---H---HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039 19 AFKQGDYETALDFYTKALKVTAEES---H---ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 19 ~~~~g~~~~A~~~~~~al~~~~p~~---~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 76 (206)
.++.|+|..|++.+.+..+.. ... . ....+..++|..+...|++++|+..+++++.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~-~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYA-KQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHH-hhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445666666666655555543 210 0 11233444555555555555555555555443
No 300
>KOG1550|consensus
Probab=95.80 E-value=0.2 Score=43.51 Aligned_cols=94 Identities=21% Similarity=0.204 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhhCCCCH
Q psy1039 10 NKLKESGNSAFKQG-----DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 10 ~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~p~~~ 81 (206)
.+.+.+|..|.+.. ++..|+.+|.++.+++ ++.+.+.+|.++..-. ++..|.++|..|... .+.
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~ 360 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHI 360 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CCh
Confidence 35677888888854 7788999999999987 4677888999997766 578999999988754 467
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhcC
Q psy1039 82 KALFRRCQAYEAI----GKFEEAYTDAKHIHRVE 111 (206)
Q Consensus 82 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~~ 111 (206)
.+.+++|.||..= -+...|...++++-+.+
T Consensus 361 ~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 361 LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 8999999887653 47788999999998877
No 301
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.089 Score=40.92 Aligned_cols=74 Identities=26% Similarity=0.360 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
..++=..+...++++.|+.+-++.+.++ |+ ++.-+.-+|.+|.++|.++.|+++++..++..|+.+.+-.-++.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~-P~---dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLN-PE---DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhC-CC---ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3444567788999999999999999999 98 78788899999999999999999999999999999887555443
No 302
>KOG1914|consensus
Probab=95.72 E-value=1.2 Score=38.27 Aligned_cols=143 Identities=16% Similarity=0.084 Sum_probs=99.7
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh--hCCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE--IVPD 79 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--l~p~ 79 (206)
++.+|.+..+|+.+-..+-.+ .+++....|++.+... |. ++.+|..-....+..++|+.-...|.+++. ++-+
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~---s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlD 87 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PS---SPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLD 87 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CC---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHh
Confidence 568999999999999888777 9999999999999999 99 899999988888999999999999999884 3433
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHH----HHHHHH---hcCCCChhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q psy1039 80 DPKALFRRCQAYEAIGKFEEAYT----DAKHIH---RVEPTNKAIQPVLSRLFAIVT---KRMQENEQLQNKVHNMFKYV 149 (206)
Q Consensus 80 ~~~~~~~la~~~~~~g~~~~A~~----~~~~al---~~~p~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 149 (206)
.+..|. ..+-.-.|+...+.. .|+-++ ..++.+.+++.....-..... ..++. +.-..+...|+++
T Consensus 88 LW~lYl--~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~--QRI~~vRriYqra 163 (656)
T KOG1914|consen 88 LWKLYL--SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEEN--QRITAVRRIYQRA 163 (656)
T ss_pred HHHHHH--HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHH--HHHHHHHHHHHHH
Confidence 344333 333334444333222 233222 256777777777665554322 22221 1223578999999
Q ss_pred cCCC
Q psy1039 150 FDTS 153 (206)
Q Consensus 150 ~~~~ 153 (206)
+..|
T Consensus 164 l~tP 167 (656)
T KOG1914|consen 164 LVTP 167 (656)
T ss_pred hcCc
Confidence 9955
No 303
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.62 E-value=0.53 Score=37.97 Aligned_cols=105 Identities=15% Similarity=0.003 Sum_probs=77.2
Q ss_pred cccchhhHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGD------------YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~ 69 (206)
++.+|++.+.|..+...--..-. .+.-+.+|++|++.+ |+ +..++..+=.+..+...-++...-
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~---~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PD---SERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46789999999888755443322 456678899999999 98 777777777777788888888999
Q ss_pred HHHHhhhCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhc
Q psy1039 70 CSKSLEIVPDDPKALFRRCQAY---EAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 70 ~~~al~l~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~ 110 (206)
.++++..+|.+...|...-... ...-.+......|.+++..
T Consensus 88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999999999877665443222 2233577888888877764
No 304
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.45 E-value=1.2 Score=36.60 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-----CCCC------------------------HHHHHHHHHHHHHcC
Q psy1039 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----VPDD------------------------PKALFRRCQAYEAIG 95 (206)
Q Consensus 45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~~------------------------~~~~~~la~~~~~~g 95 (206)
.+...+..++.++..+|+++.|.+..++|+-. .|.+ ..+.++....+.+.|
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG 117 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRG 117 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcC
Confidence 38999999999999999999999999998622 1111 235777788999999
Q ss_pred CHHHHHHHHHHHHhcCCC-ChhHHHHHHHH
Q psy1039 96 KFEEAYTDAKHIHRVEPT-NKAIQPVLSRL 124 (206)
Q Consensus 96 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 124 (206)
.+.-|.+.++-.+.+||. ||-....+-..
T Consensus 118 ~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~ 147 (360)
T PF04910_consen 118 CWRTALEWCKLLLSLDPDEDPLGVLLFIDY 147 (360)
T ss_pred cHHHHHHHHHHHHhcCCCCCcchhHHHHHH
Confidence 999999999999999999 55443333333
No 305
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.37 E-value=0.59 Score=36.83 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
...++..++..+...|+++.+++.+++.+.++|-+...|..+-.+|...|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 56678888999999999999999999999999999999999999999999999999998877654
No 306
>KOG2300|consensus
Probab=95.37 E-value=1.1 Score=37.85 Aligned_cols=124 Identities=18% Similarity=0.154 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------ 80 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------ 80 (206)
..+.....+|.....-|.|+.|...|..|++.. ......+.+-.++|..|...|+-+.-.+..+ .+.|.|
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ss 440 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSS 440 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchH
Confidence 356788889999999999999999999999987 6655567778889999999777555433333 345553
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHHHHHHHH
Q psy1039 81 ----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK-------AIQPVLSRLFAIVTKRMQEN 135 (206)
Q Consensus 81 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~~~ 135 (206)
..++|..|.-.+..+++.||...+.+.++.. +.. -....++.+...+++..+..
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~ 505 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESR 505 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3467888999999999999999999998865 222 22344566666666655533
No 307
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.36 E-value=0.026 Score=44.70 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=69.2
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHH-HHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKN-RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
-|+++..|...+....+.|-|.+--..|.+++... |. +.++|.. -+.-++..++++.+...|.++++++|+++..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~---nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PL---NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC---CceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 46788899999999999999999999999999999 99 8999987 5567788899999999999999999999876
Q ss_pred HHH
Q psy1039 84 LFR 86 (206)
Q Consensus 84 ~~~ 86 (206)
|+.
T Consensus 179 w~e 181 (435)
T COG5191 179 WIE 181 (435)
T ss_pred HHH
Confidence 553
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.30 E-value=1.1 Score=35.30 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=12.4
Q ss_pred HHHHHHHHHcc-CHHHHHHHHHHHhhh
Q psy1039 51 KNRAAVYLKQN-QNDKVIEDCSKSLEI 76 (206)
Q Consensus 51 ~~la~~~~~~~-~~~~A~~~~~~al~l 76 (206)
++.|......+ ++++|..+++++..+
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34444444444 555555555554444
No 309
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.29 E-value=0.13 Score=33.48 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=46.4
Q ss_pred HHHHccCHHHHHHHHHHHhhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 56 VYLKQNQNDKVIEDCSKSLEIVPD---------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 56 ~~~~~~~~~~A~~~~~~al~l~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
..++.|+|..|++.+.+.+..... ...+..++|.++...|++++|...++.++.+-..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345789999998888887755321 2457788999999999999999999999987543
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.28 E-value=0.65 Score=32.93 Aligned_cols=86 Identities=9% Similarity=-0.064 Sum_probs=72.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
+......-...+++.++...+...--+.|..+..-..-|.++...|+|.+|...++...+-.+..+.....+..+...++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444444558999999999999889999999999999999999999999999999998888888888888888888888
Q ss_pred HHHHHH
Q psy1039 130 KRMQEN 135 (206)
Q Consensus 130 ~~~~~~ 135 (206)
+.....
T Consensus 93 Dp~Wr~ 98 (153)
T TIGR02561 93 DAEWHV 98 (153)
T ss_pred ChHHHH
Confidence 776644
No 311
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.23 E-value=0.086 Score=27.75 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=7.0
Q ss_pred HHHHHHHHccCHHHHHHH
Q psy1039 52 NRAAVYLKQNQNDKVIED 69 (206)
Q Consensus 52 ~la~~~~~~~~~~~A~~~ 69 (206)
.+|..+..+|++++|+..
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 334444444444444444
No 312
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.21 E-value=0.04 Score=29.41 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
+++..+|.+-...++|++|+..|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46677888888888888888888887764
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.18 E-value=0.046 Score=45.90 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=76.7
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
.-.|.++......+.++-..|.|+.+.....-+-..- .. ......-+-...+.+|++++|.....-.+.-.-++++
T Consensus 317 r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s---~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~e 392 (831)
T PRK15180 317 RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII-GT---TDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEE 392 (831)
T ss_pred HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh-cC---CchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChh
Confidence 3456666667777788888888888877655443332 22 2233444555667888888888888887776667777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
...--|.....+|-++++.-++++.+.++|..
T Consensus 393 i~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 393 VLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred heeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 76666777778888999999999999988754
No 314
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.15 E-value=0.3 Score=33.31 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc------cC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA------EE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~------p~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 76 (206)
++--+..++..+...|+|++++..-.+++.... .+ .+.=..+.+++|.++...|+.++|+..|+.+-++
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 345566778889999999998887777666441 22 2233456788999999999999999999998754
No 315
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.07 E-value=1.1 Score=36.23 Aligned_cols=91 Identities=8% Similarity=0.031 Sum_probs=73.2
Q ss_pred HHHHHHHhccccCcHHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH
Q psy1039 30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQ------------NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF 97 (206)
Q Consensus 30 ~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 97 (206)
..|++.++-+ |+ +..+|..+....-..-. .+.-+..+++|++.+|++...+..+=.+.....+-
T Consensus 6 ~el~~~v~~~-P~---di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~ 81 (321)
T PF08424_consen 6 AELNRRVREN-PH---DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS 81 (321)
T ss_pred HHHHHHHHhC-cc---cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 3477788888 88 78888877765544422 56778899999999999999888888888888899
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039 98 EEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (206)
Q Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~l~~~ 124 (206)
++..+-+++++..+|++..++...-..
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 999999999999999988777665443
No 316
>KOG2300|consensus
Probab=95.00 E-value=1.5 Score=37.16 Aligned_cols=115 Identities=10% Similarity=-0.046 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HHccCHHHHHHHHHHHhhhC---CCCH
Q psy1039 8 DYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVY-LKQNQNDKVIEDCSKSLEIV---PDDP 81 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~l~---p~~~ 81 (206)
-+.++..++..+...| +...+|.+.+...... |.....+.....+|..+ ....+++.|...++++..+- |.+.
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~-is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy 84 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQ-ISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY 84 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH
Confidence 3566777788888888 7888999999988887 66555566677777654 55678999999999987553 4443
Q ss_pred ----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039 82 ----KALFRRCQAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (206)
Q Consensus 82 ----~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~ 123 (206)
.++-.++.+|.... .+..|...+++++++..+.|.....+-.
T Consensus 85 dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllf 131 (629)
T KOG2300|consen 85 DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLF 131 (629)
T ss_pred hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34556788888887 8889999999999998888866555433
No 317
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.97 E-value=0.38 Score=40.26 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 72 (206)
..-+..-|..++..|+|.++.-+-.-..++. |+ +.++..+|.|++...+|.+|-.++..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~ia-PS----~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIA-PS----PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-Cc----HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3345566788999999999999999999999 95 89999999999999999999999865
No 318
>KOG2041|consensus
Probab=94.97 E-value=1.9 Score=38.33 Aligned_cols=82 Identities=12% Similarity=0.214 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la 88 (206)
..++.+.|..+.....|++|.++|...-.. .+...|++....|.+ ++.....-|++.+.+-.+|
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a 859 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT------------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMA 859 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHH
Confidence 445556666666666666665555553211 134444444444444 2222333455555555666
Q ss_pred HHHHHcCCHHHHHHHHHH
Q psy1039 89 QAYEAIGKFEEAYTDAKH 106 (206)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~ 106 (206)
..+...|--++|++.|.+
T Consensus 860 ~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 860 DMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHhhchHHHHHHHHHh
Confidence 666666666666666544
No 319
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.87 E-value=1.5 Score=34.54 Aligned_cols=146 Identities=16% Similarity=0.066 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhCCCC-
Q psy1039 10 NKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPDD- 80 (206)
Q Consensus 10 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~- 80 (206)
.....+|..+.. ..++.+|+.+|..+.+.. .+...+.+|..|.. ..++.+|..+|+++....-..
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g------~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a 147 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAADG------LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA 147 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc------cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH
Confidence 355556655554 346888999999777765 57788889999877 448999999999998875444
Q ss_pred HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC
Q psy1039 81 PKALFRRCQAYEAIG-------KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV-TKRMQENEQLQNKVHNMFKYVFDT 152 (206)
Q Consensus 81 ~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
..+.+.+|.++..-. +...|...|.++-... ++.+...++.++..- +-... ...+..+|+++...
T Consensus 148 ~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d-----~~~A~~wy~~Aa~~ 220 (292)
T COG0790 148 ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD-----LKKAFRWYKKAAEQ 220 (292)
T ss_pred HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC-----HHHHHHHHHHHHHC
Confidence 455888888877642 2336888888877765 777888888776432 11111 11266688888883
Q ss_pred CCChhhhHHHHhhhhHhc
Q psy1039 153 SAPMDKRVTAVNNLVVLA 170 (206)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~ 170 (206)
.. .......+ ++...|
T Consensus 221 g~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 221 GD-GAACYNLG-LMYLNG 236 (292)
T ss_pred CC-HHHHHHHH-HHHhcC
Confidence 33 55566666 666555
No 320
>KOG0686|consensus
Probab=94.87 E-value=0.34 Score=39.85 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--------CCH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--------DDP 81 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--------~~~ 81 (206)
.++..+|..|...|+.+.|+++|.++-+.+ .+.......+.++-.+-..+|+|..-..+-.+|..-.. -.+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYC-TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 356788999999999999999999988877 55445677788888888889999988888887765421 123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
......|.+...+++|..|.++|-.+..
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455667888888899999999865543
No 321
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.82 E-value=0.13 Score=27.10 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCC
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAK--HIHRVEPTN 114 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~ 114 (206)
++.++.+|..+...|++++|+..++ -+..++|.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3568889999999999999999944 777777654
No 322
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.71 E-value=0.13 Score=38.27 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC----CHHHHHHHHHHHHHcCCH
Q psy1039 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----DPKALFRRCQAYEAIGKF 97 (206)
Q Consensus 22 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----~~~~~~~la~~~~~~g~~ 97 (206)
+-.-++|...|-++=....=+ ++.+.+.+|..|. ..+..+++..+.+++++.+. |++.+..++.++..+|++
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~---t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELE---TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCC---CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334467777776643322113 6888888888775 78899999999999988653 588999999999999999
Q ss_pred HHHH
Q psy1039 98 EEAY 101 (206)
Q Consensus 98 ~~A~ 101 (206)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9884
No 323
>KOG4814|consensus
Probab=94.62 E-value=0.85 Score=39.84 Aligned_cols=86 Identities=19% Similarity=0.105 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (206)
Q Consensus 48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 121 (206)
.++-+-|.-++++.+|..++++|...+..-|.+ .+....++.||..+.+.+.|++.++.|-+.+|.++-....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345567778889999999999999999876643 56677789999999999999999999999999987665555
Q ss_pred HHHHHHHHHHHH
Q psy1039 122 SRLFAIVTKRMQ 133 (206)
Q Consensus 122 ~~~~~~~~~~~~ 133 (206)
......-+...+
T Consensus 435 ~~~~~~E~~Se~ 446 (872)
T KOG4814|consen 435 LQSFLAEDKSEE 446 (872)
T ss_pred HHHHHHhcchHH
Confidence 544444333333
No 324
>KOG0530|consensus
Probab=94.60 E-value=1.7 Score=33.95 Aligned_cols=119 Identities=11% Similarity=0.052 Sum_probs=104.0
Q ss_pred cccchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHH-HHHHHHHHHhhhCCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND-KVIEDCSKSLEIVPD 79 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~l~p~ 79 (206)
|..+|.+-..|..+-.++-..+ +..+-++++...++-+ |. +...|+.+-......|+.. .-++.+..++..+..
T Consensus 70 i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pK---NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaK 145 (318)
T KOG0530|consen 70 IRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PK---NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAK 145 (318)
T ss_pred HHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-cc---chhHHHHHHHHHHHhcCcccchHHHHHHHHhcccc
Confidence 5678888888888888777765 5677889999999999 98 8999999999999999988 889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039 80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (206)
Q Consensus 80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 124 (206)
|..+|..+-.+....+.|+.-..+....++.|-.|-++++..-.+
T Consensus 146 NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfv 190 (318)
T KOG0530|consen 146 NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFV 190 (318)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEE
Confidence 999999999999999999999999999999988777777664433
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.58 E-value=0.068 Score=25.75 Aligned_cols=23 Identities=26% Similarity=0.120 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAK 105 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~ 105 (206)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555666666666666655543
No 326
>KOG2396|consensus
Probab=94.57 E-value=0.26 Score=41.58 Aligned_cols=76 Identities=14% Similarity=0.056 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHhhhCCCCHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-NDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~ 84 (206)
+.+...|.......-+.+.+.+--..|.+++... |+ ++.+|..-|.-.+.-+. .+.|...|.++++.+|+++..|
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~---~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PN---NPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CC---CchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 3466677777777777777999999999999999 99 89999998887777776 9999999999999999998765
Q ss_pred H
Q psy1039 85 F 85 (206)
Q Consensus 85 ~ 85 (206)
.
T Consensus 178 ~ 178 (568)
T KOG2396|consen 178 K 178 (568)
T ss_pred H
Confidence 4
No 327
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.50 E-value=0.075 Score=28.35 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhhC
Q psy1039 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77 (206)
Q Consensus 48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 77 (206)
.++..+|.+-+..++|++|+.+|.+++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356678888888888888888888887653
No 328
>KOG0529|consensus
Probab=94.45 E-value=0.41 Score=39.41 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=82.3
Q ss_pred cccchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHhh
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN----QNDKVIEDCSKSLE 75 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~ 75 (206)
|..+|+.-.+|+.+-.++.+.+ +|..=+...+++++.+ |. +..+|..+=-+..... ...+=++++.+++.
T Consensus 102 L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D-~R---Nfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~ 177 (421)
T KOG0529|consen 102 LKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQD-PR---NFHAWHYRRFVVEQAERSRNLEKEELEFTTKLIN 177 (421)
T ss_pred HHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC-cc---cccchHHHHHHHHHHhcccccchhHHHHHHHHHh
Confidence 5678888888999888888776 3677888889999988 86 5666555444333322 25667788888888
Q ss_pred hCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039 76 IVPDDPKALFRRCQAYEA------IGK------FEEAYTDAKHIHRVEPTNKAIQPVL 121 (206)
Q Consensus 76 l~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~l 121 (206)
-++.|..+|..+..++.. .|+ ..+-...-..++-.+|+++..+...
T Consensus 178 ~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 178 DNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred ccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 888888888888776653 231 2334555566777888888777663
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.40 E-value=0.3 Score=38.51 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=34.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
+..-+..|...|.+.+|++.++++++++|-+...+..+-.++..+|+--++.+.|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344555566666666666666666666666666666666666666655555555443
No 330
>KOG1839|consensus
Probab=94.36 E-value=1.3 Score=41.59 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=108.9
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc----CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE----ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--- 76 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--- 76 (206)
.+|..+..+..++..+...|++++|+..-.++.-+..+ +++.....+.+++...+..++...|...+.++..+
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 46888899999999999999999999998877765530 12337788999999999999999999999998766
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 77 -----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP--------TNKAIQPVLSRLFAIVTKRMQENEQLQNKVH 143 (206)
Q Consensus 77 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (206)
.|.-.-...+++.++..++.++-|..+.+.|+...- ........++++....++...+.. -.+...
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~-~ek~t~ 1126 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALE-HEKVTY 1126 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHH-HHhhHH
Confidence 344455667888899999999999999999988532 123445556666666666555332 122234
Q ss_pred HHHHHhcC
Q psy1039 144 NMFKYVFD 151 (206)
Q Consensus 144 ~~~~~~~~ 151 (206)
.+|+..+.
T Consensus 1127 ~iy~~qlg 1134 (1236)
T KOG1839|consen 1127 GIYKEQLG 1134 (1236)
T ss_pred HHHHHhhC
Confidence 56666666
No 331
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.23 E-value=0.2 Score=39.04 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=48.9
Q ss_pred HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy1039 28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA 93 (206)
Q Consensus 28 A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 93 (206)
|..+|.+|+.+. |+ ++..|..+|......|+.=.|+-+|-+++-....++.+.-++...+..
T Consensus 1 A~~~Y~~A~~l~-P~---~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL-PS---NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH--TT---BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC-CC---CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 678899999999 88 788889999999888999999988888887766677788888777776
No 332
>KOG1258|consensus
Probab=93.92 E-value=3.9 Score=35.44 Aligned_cols=121 Identities=10% Similarity=0.025 Sum_probs=76.1
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-CCCHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKA 83 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~~ 83 (206)
++.+-..|......-...|+++...-.|++++-.+ .. ....|...+.-....|+.+-|...+.++.++. |..+..
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~---Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i 368 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-AL---YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII 368 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hh---hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH
Confidence 34455556666666667777777777777777766 55 56667777776666677777776666666553 444555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
...-+..-...|++..|...++++..-.|+...+...-..+..+.+
T Consensus 369 ~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 369 HLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 5555666666677777777777777666665554444444443333
No 333
>KOG0529|consensus
Probab=93.77 E-value=3.4 Score=34.25 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC----CH
Q psy1039 24 DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ--NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG----KF 97 (206)
Q Consensus 24 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g----~~ 97 (206)
-+++-+.+...+++.+ |+ +..+|+.+.-++.+.+. +..=++.++++++.+|.|-.+|..+=.+..... ..
T Consensus 90 ~ld~eL~~~~~~L~~n-pk---sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~ 165 (421)
T KOG0529|consen 90 LLDEELKYVESALKVN-PK---SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE 165 (421)
T ss_pred hhHHHHHHHHHHHHhC-ch---hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc
Confidence 4666778899999999 99 89999999999987764 788899999999999999888776654444333 25
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCCChhhh
Q psy1039 98 EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN-----EQLQNKVHNMFKYVFDTSAPMDKR 159 (206)
Q Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 159 (206)
.+-.....+++.-++.|-.++..-..+...+...+..- .-+.+......+.++.+|.|...+
T Consensus 166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~W 232 (421)
T KOG0529|consen 166 KEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCW 232 (421)
T ss_pred hhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccccee
Confidence 66778888999999999888888777766443322211 112223444555555555554443
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.77 E-value=0.1 Score=25.10 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q psy1039 12 LKESGNSAFKQGDYETALDFY 32 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~ 32 (206)
.+.+|..+...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344455555555555554443
No 335
>KOG0985|consensus
Probab=93.74 E-value=4.2 Score=37.87 Aligned_cols=134 Identities=10% Similarity=0.029 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC-------------------------CHHHHHHHHHHHHHcCCHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-------------------------DPKALFRRCQAYEAIGKFEEA 100 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-------------------------~~~~~~~la~~~~~~g~~~~A 100 (206)
+.+-|..++.++..+|+|..|....++|-....- +.+-+-.+..-|...|.|++-
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 3445778999999999999999988887543210 011233456668888999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCChhhhHHHHhhhhHhcccchh
Q psy1039 101 YTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-----TSAPMDKRVTAVNNLVVLAREMSG 175 (206)
Q Consensus 101 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a 175 (206)
+..++.++.++..|......++-++.+.+-.+-.. ..+-+..+..- ...+...|..+.-.|.+-..++.|
T Consensus 1299 Isl~Ea~LGLERAHMgmfTELaiLYskykp~km~E-----Hl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMGMFTELAILYSKYKPEKMME-----HLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 99999999998888888888888876544222111 12222222221 134567788888888888888888
Q ss_pred hHHHHhcch
Q psy1039 176 AEMLLKSGV 184 (206)
Q Consensus 176 ~~~~~~~~~ 184 (206)
+--+|.-|.
T Consensus 1374 a~tmm~h~t 1382 (1666)
T KOG0985|consen 1374 ALTMMEHPT 1382 (1666)
T ss_pred HHHHHhCCh
Confidence 888776654
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.63 E-value=1.5 Score=32.82 Aligned_cols=77 Identities=9% Similarity=0.061 Sum_probs=57.6
Q ss_pred HHHccCHHHHHHHHHHHhhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHHHHH
Q psy1039 57 YLKQNQNDKVIEDCSKSLEIVP--DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT----NKAIQPVLSRLFAIVTK 130 (206)
Q Consensus 57 ~~~~~~~~~A~~~~~~al~l~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~ 130 (206)
++....-.+|..-|-++- -.| +.+...+.+|..|. ..+-+.++..+-+++++.+. |+++...++.++...++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCcHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 344545667777775533 333 46777888886555 78899999999999998654 48999999999999888
Q ss_pred HHHHH
Q psy1039 131 RMQEN 135 (206)
Q Consensus 131 ~~~~~ 135 (206)
.+.+.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 87765
No 337
>KOG1310|consensus
Probab=93.62 E-value=0.73 Score=39.41 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAI---GKFEEAYTDAKHIHRVEPTNKAIQPVLS 122 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~ 122 (206)
..+-+..-|.-.+..+.+..|+..|.+++..-|+....+.+++.++.+. |+.-.|+..+..+++++|....++..|.
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 3444555555555667789999999999999999999999999888876 5677899999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1039 123 RLFAIVTKRMQEN 135 (206)
Q Consensus 123 ~~~~~~~~~~~~~ 135 (206)
+....++....+.
T Consensus 453 ~aL~el~r~~eal 465 (758)
T KOG1310|consen 453 RALNELTRYLEAL 465 (758)
T ss_pred HHHHHHhhHHHhh
Confidence 9999999887744
No 338
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.59 E-value=1.5 Score=29.48 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=54.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHhhhCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCChhHH
Q psy1039 53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPK---ALFRRCQAYEAIGK-----------FEEAYTDAKHIHRVEPTNKAIQ 118 (206)
Q Consensus 53 la~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 118 (206)
++..++..|++-+|++..+..+..++.+.. .+..-|.++..+.. .-.+++++.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 467788999999999999999999887764 44455777766543 2458899999999999985555
Q ss_pred HHHHHH
Q psy1039 119 PVLSRL 124 (206)
Q Consensus 119 ~~l~~~ 124 (206)
..++.-
T Consensus 82 ~~la~~ 87 (111)
T PF04781_consen 82 FELASQ 87 (111)
T ss_pred HHHHHH
Confidence 555444
No 339
>KOG1839|consensus
Probab=93.52 E-value=2.6 Score=39.73 Aligned_cols=168 Identities=14% Similarity=0.066 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-------cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-------EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-- 77 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-------p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-- 77 (206)
..+...++.|......|.+.+|.+ ..+++.+.. |+ .+..+..++..+...|++++|+.+..++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~---~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR 1005 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPE---VASKYRSLAKLSNRLGDNQEAIAQQRKACIISER 1005 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchh---HHHHHHHHHHHHhhhcchHHHHHhcccceeeech
Confidence 567788899999999999998888 333333320 44 78899999999999999999999999887553
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 78 ------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV-----EPTNK---AIQPVLSRLFAIVTKRMQENEQLQNKVH 143 (206)
Q Consensus 78 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (206)
|+....+-+++...+..++...|...+.++..+ .|++| .+..+++.+...+++.+.+.+-.+. +.
T Consensus 1006 ~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~-A~ 1084 (1236)
T KOG1839|consen 1006 VLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLES-AL 1084 (1236)
T ss_pred hccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHH-HH
Confidence 344667888888888888888898888887774 34454 3445555555555665555442222 22
Q ss_pred HHHHHhcCC-C-CChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 144 NMFKYVFDT-S-APMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 144 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
..-++...+ + .........++.....+.+..|.+..
T Consensus 1085 a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1085 AKNKKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 233333331 1 22333344555555566665555444
No 340
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=4.7 Score=35.00 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhccccCcHHHHHHHHH--HHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1039 27 TALDFYTKALKVTAEESHERATCLKN--RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDA 104 (206)
Q Consensus 27 ~A~~~~~~al~~~~p~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~ 104 (206)
.++..+...+..+ |. +..++.. +...+...+....+.-.+..++..+|++..++.++|.+....|..-.+...+
T Consensus 49 ~~~~a~~~~~~~~-~~---~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 49 LAIYALLLGIAIN-DV---NPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred HHHHHHHccCccC-CC---CHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 3666677777777 66 3443222 6888888899999999999999999999999999999999888887777666
Q ss_pred HH-HHhcCCCChhHHHHHHHHHH
Q psy1039 105 KH-IHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 105 ~~-al~~~p~~~~~~~~l~~~~~ 126 (206)
.. +....|++......+...+.
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHH
Confidence 65 88899999887777744443
No 341
>KOG3807|consensus
Probab=93.35 E-value=3.7 Score=33.35 Aligned_cols=115 Identities=14% Similarity=0.067 Sum_probs=75.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--------------
Q psy1039 13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP-------------- 78 (206)
Q Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p-------------- 78 (206)
+..-....+..+..+-|+.-..+++++ |+ -+.+|..++.- ..--..+|...++++++.-.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN-~e---CA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEIN-NE---CATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSP 261 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcC-ch---hhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc
Confidence 444456667778888888889999999 88 67777766643 23345666666666664311
Q ss_pred ---------CCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHHH
Q psy1039 79 ---------DDPK--ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--KAIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 79 ---------~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~ 133 (206)
.+.- ...++|.|..++|+..+|++.++...+-.|-. -.++.++-+....++.+.+
T Consensus 262 ~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 262 QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 34578999999999999999999888766622 2344455444444444433
No 342
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.20 E-value=2.5 Score=30.98 Aligned_cols=65 Identities=9% Similarity=0.108 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
--..+..+|.-|.+.|++++|++.|.++..-... -.+.++.+-.+.+..++|.....+..++-.+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3467889999999999999999999998765433 3567888999999999999999998888765
No 343
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.12 E-value=2.1 Score=35.76 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=63.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHhhhCC--------C-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 53 RAAVYLKQNQNDKVIEDCSKSLEIVP--------D-----D-----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 53 la~~~~~~~~~~~A~~~~~~al~l~p--------~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
-|...+++++|..|.--|..++++.. . + ...--.+..||..+++.+-|.....+.+.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 34455666777776666666666522 1 1 1123457899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy1039 115 KAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
..-+..-+.+.+.+.++..+.+
T Consensus 262 frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877665
No 344
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.84 E-value=2.9 Score=30.73 Aligned_cols=87 Identities=9% Similarity=0.029 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--CC--HHHHHHHH
Q psy1039 13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--DD--PKALFRRC 88 (206)
Q Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~--~~~~~~la 88 (206)
|..+..+.+.|..++|+.-|...-+.+ ...+..-+....|......|+-..|+.+|..+-.-.| .- --+.++-|
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg--~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTG--YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 344444455555555555555443322 1111233344445555555555555555555443322 11 12333344
Q ss_pred HHHHHcCCHHHHH
Q psy1039 89 QAYEAIGKFEEAY 101 (206)
Q Consensus 89 ~~~~~~g~~~~A~ 101 (206)
.++...|.|++-.
T Consensus 140 ~lLvD~gsy~dV~ 152 (221)
T COG4649 140 YLLVDNGSYDDVS 152 (221)
T ss_pred HHHhccccHHHHH
Confidence 4555555554443
No 345
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.83 E-value=0.52 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
+.+|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677777777777777777777774
No 346
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.81 E-value=0.64 Score=38.59 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=39.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEI---------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
...+...+.-+|+|..|+...+.. .+ -+.+...+|..|.+|.-+++|.+|++.|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667778888877776542 12 223455677778888888888888887776653
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.68 E-value=1.5 Score=37.18 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=83.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCC
Q psy1039 17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK 96 (206)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~ 96 (206)
...+..|+.-.|-+-...+++.. |. .+.....++..+..+|.|+.+......+-.+-..-.++..-+-..+..+|+
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~-~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQ-QQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhC-CC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 44567888888988888889888 77 667777788999999999999999887666655556666677788899999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039 97 FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 133 (206)
+++|.....-.+.-+-+++++....+.....++-..+
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHH
Confidence 9999888877776655666554443333334443333
No 348
>KOG2041|consensus
Probab=92.67 E-value=3.5 Score=36.72 Aligned_cols=100 Identities=11% Similarity=-0.017 Sum_probs=55.7
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh---
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE--- 75 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--- 75 (206)
+| ++..|..++...+..-.++-|..-|-+.-... +- +..... -..+|..----|+|++|...|-.+=+
T Consensus 689 nP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gik~vkrl~~i~s~-~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GIKLVKRLRTIHSK-EQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-chhHHHHhhhhhhH-HHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 44 67889999998888888888877766654432 10 000000 11233333334666666655532211
Q ss_pred -------------------h---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 76 -------------------I---VPD---DPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 76 -------------------l---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
. +.+ ...++.+.|..+..+..|++|.++|..+
T Consensus 766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 111 1346777777777777777777777654
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.37 E-value=8.6 Score=35.08 Aligned_cols=174 Identities=14% Similarity=0.079 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----CCCCH-
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPDDP- 81 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~~~- 81 (206)
++.--..|.+....|+++.|+++.+.++..- |.. .....++...|.+....|++.+|..+...+.++ +....
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L-~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~ 536 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQL-PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLA 536 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHH
Confidence 4556667889999999999999999999987 641 224567888999999999999999999988877 33333
Q ss_pred -HHHHHHHHHHHHcCC--HHHHHHHHHHHHhc----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Q psy1039 82 -KALFRRCQAYEAIGK--FEEAYTDAKHIHRV----EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS 153 (206)
Q Consensus 82 -~~~~~la~~~~~~g~--~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (206)
.+.+..+.++...|+ +.+....+...-.. .|-+.-.......+....-...... . .....++.-.. .+
T Consensus 537 ~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~---~-ear~~~~~~~~~~~ 612 (894)
T COG2909 537 LWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAE---A-EARLGIEVGSVYTP 612 (894)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhh---H-Hhhhcchhhhhccc
Confidence 334455888889994 33334444433332 2222212122112211111111100 0 01111222222 23
Q ss_pred CChhhh---HHHHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039 154 APMDKR---VTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLK 193 (206)
Q Consensus 154 ~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (206)
.....+ ..++.+..-.|+.++|...+ ..+.-++.
T Consensus 613 ~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l------~~~~~l~~ 649 (894)
T COG2909 613 QPLLSRLALSMLAELEFLRGDLDKALAQL------DELERLLL 649 (894)
T ss_pred chhHHHHHHHHHHHHHHhcCCHHHHHHHH------HHHHHHhc
Confidence 332222 36788889999999988887 66666666
No 350
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.33 E-value=5.9 Score=33.08 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 13 KESGNSAFKQGDYETALDFYTKALKVTAEE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
..+-+++.-.|+|..|++..+. ++++ .. ..-....++..|-||+.+++|.+|+..|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~-~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLN-KKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcc-cchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788889999999998765 3333 11 12256778999999999999999999999977
No 351
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.22 E-value=1.2 Score=35.18 Aligned_cols=65 Identities=8% Similarity=0.132 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 76 (206)
...++..++..+...|+++.++..+++.+..+ |- +-..|..+-..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~---~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PY---DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-cc---chHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35567788899999999999999999999999 98 7889999999999999999999999986654
No 352
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.05 E-value=8.2 Score=34.12 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccCc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC---
Q psy1039 7 NDYNKLKESGNSAF-KQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--- 79 (206)
Q Consensus 7 ~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~p~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--- 79 (206)
..+...+.+|.+++ ...+++.|..++.+++.+. ... .....+-+.++.++.+.+... |...++++++.-..
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~-~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLC-ERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 35678889999998 6889999999999999987 431 123445566788888888777 99999998876444
Q ss_pred -CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcC--CCChhHHHHHH
Q psy1039 80 -DPKALFRRC--QAYEAIGKFEEAYTDAKHIHRVE--PTNKAIQPVLS 122 (206)
Q Consensus 80 -~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 122 (206)
.+...+++- ..+...+++..|...++...... ++++.+...+.
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 233334433 22333379999999999988876 45555544433
No 353
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.94 E-value=3 Score=31.82 Aligned_cols=59 Identities=10% Similarity=0.128 Sum_probs=31.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
.+++.+..++|+...+.-++-. |. +......+-..+...|+|++|...++-+-++.|.+
T Consensus 10 eLL~~~sL~dai~~a~~qVkak-Pt---da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAK-PT---DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-Cc---cccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4445555555555555555555 54 44444444455555555555555555555555544
No 354
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.82 E-value=3.9 Score=31.60 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC------CHHHHHHHHHHHHHcC
Q psy1039 25 YETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD------DPKALFRRCQAYEAIG 95 (206)
Q Consensus 25 ~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~------~~~~~~~la~~~~~~g 95 (206)
....|+++.+|+... .. ..+...+...+|.-|+..|+|++|...|+.+....-. .......+..|+..+|
T Consensus 154 s~~iI~lL~~A~~~f-~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 154 SKLIIELLEKAYEQF-KKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHHHH-HHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 345667777777765 31 2334566778999999999999999999998654221 2445667788999999
Q ss_pred CHHHHHHHHHHH
Q psy1039 96 KFEEAYTDAKHI 107 (206)
Q Consensus 96 ~~~~A~~~~~~a 107 (206)
+.+..+.+.-+.
T Consensus 233 ~~~~~l~~~leL 244 (247)
T PF11817_consen 233 DVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHH
Confidence 988887765443
No 355
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.31 E-value=2.1 Score=33.13 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
......+|..|+..|+|++|+.+|+.+.... .. ......++..+..|+..+|+.+..+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~y-r~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSY-RREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4456789999999999999999999997654 21 23456778889999999999999888876654
No 356
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=91.15 E-value=2.2 Score=30.08 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 131 (206)
....+...+..|++.-|......++..+|+|..+......++..++..
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555555555555555555555555554443
No 357
>KOG1258|consensus
Probab=90.65 E-value=11 Score=32.86 Aligned_cols=157 Identities=11% Similarity=0.014 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
-.+.|...+......|+.+-|-..+.++.+..-|. .+.+...-+..-...|++..|...+++...-.|....+-...
T Consensus 330 Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~---~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~ 406 (577)
T KOG1258|consen 330 YDEFWIKYARWMESSGDVSLANNVLARACKIHVKK---TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRK 406 (577)
T ss_pred hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC---CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHH
Confidence 35678888888888899999998899988875355 566666666666778999999999999997779999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHh
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRV--EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVN 164 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 164 (206)
.......|+.+.+....+..... .-.+..+...+..-+.++..... ..-..+...+..+.+ .|.+.........
T Consensus 407 ~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~---~d~~~a~~~l~~~~~~~~~~k~~~~~~~~ 483 (577)
T KOG1258|consen 407 INWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR---EDADLARIILLEANDILPDCKVLYLELIR 483 (577)
T ss_pred HhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh---cCHHHHHHHHHHhhhcCCccHHHHHHHHH
Confidence 99999999999998422222222 22344444333333333222211 111235567777777 6777776666666
Q ss_pred hhhHhc
Q psy1039 165 NLVVLA 170 (206)
Q Consensus 165 ~~~~~~ 170 (206)
..+...
T Consensus 484 ~~~~~~ 489 (577)
T KOG1258|consen 484 FELIQP 489 (577)
T ss_pred HHHhCC
Confidence 555443
No 358
>KOG3616|consensus
Probab=90.57 E-value=4.8 Score=36.25 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH------HHhccc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTK------ALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---- 76 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~------al~~~~---p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---- 76 (206)
+.+-..|..|-+..++++|+++|.+ ++++.. |. .-..+-...|.-+...|+++-|+..|-.+--+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~--evv~lee~wg~hl~~~~q~daainhfiea~~~~kai 739 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPE--EVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI 739 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcH--HHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 4455667778888889999998765 343321 22 11222233455556666666666665432111
Q ss_pred -------------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 77 -------------------VP--DDPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 77 -------------------~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
.. .-...|-..+.-|...|+|+-|.+.|.++
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 00 11223445677888888888888887665
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.54 E-value=1.8 Score=34.39 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 73 (206)
..+...+..|...|.+.+|+++.++++.++ |= +...+..+-..+..+|+-.+++..|++.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL---~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PL---SEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hh---hhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 345667788999999999999999999999 86 7888888999999999988888888764
No 360
>KOG2422|consensus
Probab=90.43 E-value=11 Score=32.78 Aligned_cols=143 Identities=16% Similarity=0.145 Sum_probs=97.3
Q ss_pred cCCHHHHHHHHHHHHhccccC--------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-----hCCCC--------
Q psy1039 22 QGDYETALDFYTKALKVTAEE--------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-----IVPDD-------- 80 (206)
Q Consensus 22 ~g~~~~A~~~~~~al~~~~p~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----l~p~~-------- 80 (206)
..-|++|...|.-+....+|+ .+++...+...+.+...+|+.+-|.....+++- +.|.+
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 456888888888887765343 467888999999999999999988888887762 23322
Q ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy1039 81 -----------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAIVTK-RMQENEQLQNKVHNMFK 147 (206)
Q Consensus 81 -----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 147 (206)
..++++.-..+.+.|++.-|.+.++-.+.++|. +|-....+-.++....+ +.. +.++++
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqw--------iI~~~~ 402 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQW--------IIELSN 402 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHH--------HHHHHH
Confidence 123445556677889999999999999999998 88777766666654333 222 223333
Q ss_pred HhcC-----CCCChhhhHHHHhhhhHhccc
Q psy1039 148 YVFD-----TSAPMDKRVTAVNNLVVLARE 172 (206)
Q Consensus 148 ~~~~-----~~~~~~~~~~~~~~~~~~~~~ 172 (206)
..-. .-.+..+...+|..++.....
T Consensus 403 ~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~ 432 (665)
T KOG2422|consen 403 EPENMNKLSQLPNFGYSLALARFFLRKNEE 432 (665)
T ss_pred HHHhhccHhhcCCchHHHHHHHHHHhcCCh
Confidence 3211 134455666667766666553
No 361
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=90.18 E-value=2.5 Score=29.79 Aligned_cols=53 Identities=23% Similarity=0.161 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE 99 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~ 99 (206)
.......+...+..|++.-|.+..+.++..+|+|..+...++.++.++|.-.+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 55677788889999999999999999999999999999999999998876544
No 362
>KOG0890|consensus
Probab=89.91 E-value=9.7 Score=38.50 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=89.1
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-CCC---
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDD--- 80 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~--- 80 (206)
+..-++.|.+.|.+..+.|+++.|-...-.|.+.. -+.++..+|..++..|+-..|+..+++.+.++ |++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~ 1739 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTP 1739 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC
Confidence 44568899999999999999999999988888876 36788999999999999999999999999664 331
Q ss_pred -------------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 81 -------------PKALFRRCQAYEAIGKF--EEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 81 -------------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
..+.+..+.-....|++ .+-.+.|..+.+..|...+-+..++.-+.+
T Consensus 1740 ~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1740 YTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 12344444444455554 345788999999999777666666644443
No 363
>KOG1914|consensus
Probab=89.72 E-value=13 Score=32.29 Aligned_cols=73 Identities=15% Similarity=0.051 Sum_probs=65.6
Q ss_pred HHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 33 TKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 33 ~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
++-++.+ |. +..+|+.+-.-+..+ .+++..+.|++.+...|..+.+|-..........+|+.-.+.|.+|+.-
T Consensus 10 ~~rie~n-P~---di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEEN-PY---DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcC-Cc---cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5667788 88 899999888777555 9999999999999999999999999999999999999999999999874
No 364
>KOG2422|consensus
Probab=89.53 E-value=13 Score=32.40 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=62.2
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cC-------------c---HHHHHHHHHHHHHHHHcc
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EE-------------S---HERATCLKNRAAVYLKQN 61 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~-------------~---~~~~~~~~~la~~~~~~~ 61 (206)
|..+|-+...+..++..+-.+|+.+-|-....+++-..+ |. . ....-+++.--..+.+.|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456788999999999999999999998888777775331 11 0 112222333334456789
Q ss_pred CHHHHHHHHHHHhhhCCC-CHHHHHHHH
Q psy1039 62 QNDKVIEDCSKSLEIVPD-DPKALFRRC 88 (206)
Q Consensus 62 ~~~~A~~~~~~al~l~p~-~~~~~~~la 88 (206)
-+.-|.++|.-.+.++|. ++-+...+-
T Consensus 357 C~rTA~E~cKlllsLdp~eDPl~~l~~I 384 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPSEDPLGILYLI 384 (665)
T ss_pred ChHHHHHHHHHHhhcCCcCCchhHHHHH
Confidence 999999999999999998 765544443
No 365
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=89.20 E-value=12 Score=31.11 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccCcHHHHHHHHH--HHHHHHHccCHHHHHHHHHHHhhh
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKV-TAEESHERATCLKN--RAAVYLKQNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~l 76 (206)
.-....+..+++.++|..|...+...++. . ++.. ...+.. .|..++..-+|.+|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~-~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLP-GREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-chhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35567888999999999999999999985 4 4422 234444 455567888999999999987653
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.09 E-value=1.8 Score=32.97 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=62.1
Q ss_pred HHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 55 AVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 55 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
..+.+.+...+++...+.-++-+|.+......+-..+.-.|+|+.|..-++-+-++.|+...-......+...
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3556788999999999999999999999999999999999999999999999999999986655555444433
No 367
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.03 E-value=13 Score=31.56 Aligned_cols=147 Identities=13% Similarity=0.034 Sum_probs=93.0
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
++.+|++.-.|+.+-..+-.+|.+++-.+.|++...-. |- -..+|...-.--+..++|+.....|.+++.-.-. .
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~---~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-l 109 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PI---MEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-L 109 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-cc---ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-H
Confidence 56899999999999999999999999999999998877 74 3444443333333457888888888888754322 2
Q ss_pred HHHHH-HHHHHHHc----C----CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC
Q psy1039 82 KALFR-RCQAYEAI----G----KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM-QENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 82 ~~~~~-la~~~~~~----g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 151 (206)
+.|.. +..+-... | ...+|.+.--.+.-.+|.....+...+.-........ ....+.-..+...|.+++.
T Consensus 110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 22211 11111111 1 1234444444455578999888888877665443321 1122223357889999999
Q ss_pred CC
Q psy1039 152 TS 153 (206)
Q Consensus 152 ~~ 153 (206)
.|
T Consensus 190 tP 191 (660)
T COG5107 190 TP 191 (660)
T ss_pred Cc
Confidence 55
No 368
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.95 E-value=1.3 Score=21.65 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 63 NDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
++.|...|++++...|.++..|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 444444455555444444444443
No 369
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.57 E-value=3.2 Score=35.16 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039 17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73 (206)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 73 (206)
...++.|+.+.|.+.. -+++ +...|..+|...+..|+++-|..+|.++
T Consensus 326 eLAl~lg~L~~A~~~a---~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 326 ELALQLGNLDIALEIA---KELD------DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHCT-HHHHHHHC---CCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHhcCCHHHHHHHH---HhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3445667777764332 2222 4567777888777888888877777764
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.54 E-value=17 Score=32.17 Aligned_cols=87 Identities=15% Similarity=0.073 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHhhhC--CCCHH----HHHHHHHHHHHcCCHH
Q psy1039 26 ETALDFYTKALKVTAEESHERATCLKNRAAVYL-KQNQNDKVIEDCSKSLEIV--PDDPK----ALFRRCQAYEAIGKFE 98 (206)
Q Consensus 26 ~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~l~--p~~~~----~~~~la~~~~~~g~~~ 98 (206)
..|+.+++-+++..++.+...+.+++.+|..++ ...++++|..++++++.+. ++..+ +-+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 456888888884221455567888999999887 7889999999999998776 44443 3455688888888888
Q ss_pred HHHHHHHHHHhcCCC
Q psy1039 99 EAYTDAKHIHRVEPT 113 (206)
Q Consensus 99 ~A~~~~~~al~~~p~ 113 (206)
|...+++.++...+
T Consensus 118 -a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 118 -ALKNLDKAIEDSET 131 (608)
T ss_pred -HHHHHHHHHHHHhc
Confidence 99999998886544
No 371
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.39 E-value=1.6 Score=21.33 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039 95 GKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (206)
Q Consensus 95 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 124 (206)
|+++.|...|++++...|.++.++......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 578899999999999999998888776544
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.55 E-value=5.2 Score=25.12 Aligned_cols=60 Identities=20% Similarity=0.191 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHH
Q psy1039 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR---CQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~a 107 (206)
.-....|.-++..++..+|+...+++++..++.++.+..+ ..+|...|+|.+.++...+=
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777788899999999999998888877665555 46688888888877665443
No 373
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.35 E-value=1.8 Score=26.91 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=9.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q psy1039 14 ESGNSAFKQGDYETALDFYTKAL 36 (206)
Q Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al 36 (206)
..+..+=+.|++++|+.+|+.++
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 33333334444444444433333
No 374
>KOG3783|consensus
Probab=87.15 E-value=5.6 Score=34.17 Aligned_cols=86 Identities=10% Similarity=-0.023 Sum_probs=64.9
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
..|+.+..+...+..+...|+-+.|+.++...+. . .-+...+..++.+|-++..+.+|..|..++......+.-+...
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~-~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~ 339 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-I-RMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAF 339 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHH
Confidence 4577777888888888888998888999998887 3 3233467788899999999999999999999887766544433
Q ss_pred HHHHH-HHH
Q psy1039 84 LFRRC-QAY 91 (206)
Q Consensus 84 ~~~la-~~~ 91 (206)
|..++ -|+
T Consensus 340 Y~Yfa~cc~ 348 (546)
T KOG3783|consen 340 YTYFAGCCL 348 (546)
T ss_pred HHHHHHHHH
Confidence 43333 444
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.84 E-value=1.7 Score=23.90 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039 51 KNRAAVYLKQNQNDKVIEDCSKSLE 75 (206)
Q Consensus 51 ~~la~~~~~~~~~~~A~~~~~~al~ 75 (206)
+.+|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999884
No 376
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.64 E-value=2.2 Score=25.79 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKV 38 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 38 (206)
.+..+...|..+=+.|++++|+.+|..+++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3445556666666677777777776666654
No 377
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.24 E-value=20 Score=30.48 Aligned_cols=63 Identities=19% Similarity=0.105 Sum_probs=41.1
Q ss_pred HHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039 58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 58 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 133 (206)
.+.|+++.|.+... ..+++..|-++|......|+++-|.++|+++-. ...+..++...++.+.
T Consensus 329 l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHH
Confidence 35566666655442 234778999999999999999999999988732 3444455555554433
No 378
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=86.01 E-value=2.5 Score=32.35 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=62.7
Q ss_pred HHHcCCHHHHHHHHHHHHhccc--cC------cHHHHHHHHHHHHHHHHccCHH-HH-HHHHHHHhhh--CCCCHHH--H
Q psy1039 19 AFKQGDYETALDFYTKALKVTA--EE------SHERATCLKNRAAVYLKQNQND-KV-IEDCSKSLEI--VPDDPKA--L 84 (206)
Q Consensus 19 ~~~~g~~~~A~~~~~~al~~~~--p~------~~~~~~~~~~la~~~~~~~~~~-~A-~~~~~~al~l--~p~~~~~--~ 84 (206)
.+..|+|+.|+++..-+|+.+- |+ +..-++-...-+......|+.- -. ...+.....- -|+-..+ +
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 4568999999999999999763 32 1222333444455555566521 11 1122222110 1333333 3
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 85 FRRCQAYE---------AIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 85 ~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
-..|..+. ..++...|...+++++.++|+. .+...+.++...++
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr 225 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence 34466563 4568889999999999999764 34444444444443
No 379
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.98 E-value=7.7 Score=31.52 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1039 24 DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--VPDDPKALFRRCQAYEAIGKFEEAY 101 (206)
Q Consensus 24 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--~p~~~~~~~~la~~~~~~g~~~~A~ 101 (206)
+|..-..+|.-...+. |+ +..-.|++.+.-+..-...++...+....- -......+-.+|..+.++|+.++|.
T Consensus 311 DW~~I~aLYdaL~~~a-pS----PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr 385 (415)
T COG4941 311 DWPAIDALYDALEQAA-PS----PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEAR 385 (415)
T ss_pred ChHHHHHHHHHHHHhC-CC----CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHH
Confidence 4444445555555555 64 445566676665555555555555443322 1122334556799999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHH
Q psy1039 102 TDAKHIHRVEPTNKAIQPVLSR 123 (206)
Q Consensus 102 ~~~~~al~~~p~~~~~~~~l~~ 123 (206)
..|++++.+.++..+.......
T Consensus 386 ~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 386 AAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHHHHHhcCChHHHHHHHHH
Confidence 9999999999887766554443
No 380
>KOG0546|consensus
Probab=85.00 E-value=0.94 Score=36.66 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q psy1039 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY 91 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~ 91 (206)
..+.+..-++.+.+..|+..-..+++.+ ++ ...+++.++..+....++++|++++..+....|++....-.+..+-
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~-~s---~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDE-RS---KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccC-hh---hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 3446777778888888888878888877 77 7889999999999999999999999999999999877655555444
Q ss_pred HHcCCH
Q psy1039 92 EAIGKF 97 (206)
Q Consensus 92 ~~~g~~ 97 (206)
....++
T Consensus 354 ~~~~~~ 359 (372)
T KOG0546|consen 354 QKKKQY 359 (372)
T ss_pred hHHHHH
Confidence 444433
No 381
>KOG0985|consensus
Probab=84.92 E-value=36 Score=32.25 Aligned_cols=133 Identities=15% Similarity=0.150 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
.+..|..+|.+....|...+|++.| +..+++..|...-.+..+.|.|++-++++..+-+.- ..+.+...+-..+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSy-----ikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESY-----IKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYIDSELIFAY 1176 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHH-----HhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccchHHHHHHH
Confidence 4678999999999999999999999 445788889999999999999999999988776532 3334444444444
Q ss_pred HHHHHHHHHHHHH-----------HHHH--HHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039 126 AIVTKRMQENEQL-----------QNKV--HNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV 184 (206)
Q Consensus 126 ~~~~~~~~~~~~~-----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 184 (206)
.+.++..+...-+ ..++ ..+|+.+.-.=....-+-+++..+..+|.+..|...-.|--.
T Consensus 1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4443332211100 0000 112222211112234466778888888888877776655433
No 382
>PF12854 PPR_1: PPR repeat
Probab=84.77 E-value=3.5 Score=21.02 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDC 70 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~ 70 (206)
...|..+-..|.+.|+.++|.+.|
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~ 30 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELF 30 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHH
Confidence 334444444444555555554444
No 383
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.67 E-value=2.8 Score=26.10 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKV 38 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 38 (206)
.+..+...|..+=+.|+|++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666554
No 384
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.63 E-value=12 Score=26.37 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=32.1
Q ss_pred HHHHHH-HHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 50 LKNRAA-VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 50 ~~~la~-~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
|+.+|. .+..+|+-++--..++...+.+..++..++.+|.+|..+|+..++.+.+.+|=+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344444 233445555544555555544556677777788888888888877777766643
No 385
>KOG2581|consensus
Probab=84.18 E-value=24 Score=29.60 Aligned_cols=107 Identities=14% Similarity=0.036 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--C--CCHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--P--DDPK 82 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p--~~~~ 82 (206)
+..|+.....+-..|+...--..+...++..+ -+....+.+...+=.+|..-+.|+.|-....+..--+ . ....
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 45666677777777775554444444444321 1111134455556677888888888888777755211 1 2244
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 115 (206)
..|.+|.+-.-.++|..|.+++-.|+...|.+.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 567789999999999999999999999998753
No 386
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.28 E-value=16 Score=26.98 Aligned_cols=106 Identities=13% Similarity=-0.002 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHH-HHHHHHHHHHHHHccCHHHHHHHHHHH-hhhCCCCHHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER-ATCLKNRAAVYLKQNQNDKVIEDCSKS-LEIVPDDPKALFRR 87 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a-l~l~p~~~~~~~~l 87 (206)
-+....|.+....|+...|+..|..+-.-. |-+... -.+...-+..+...|.|++-..-.+.. -.-+|--..+.-.|
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 356678888999999999999999887765 432111 234555666777888888877666553 24456566777788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 117 (206)
|.+-++.|++..|...|..+.. +...|..
T Consensus 174 glAa~kagd~a~A~~~F~qia~-Da~aprn 202 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRN 202 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc-cccCcHH
Confidence 9999999999999999987765 4444433
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.76 E-value=6 Score=29.18 Aligned_cols=50 Identities=28% Similarity=0.286 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
....++..++.++..| ++..+.+++.++...|+.++|.....++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3445555666666666 5667777788888888888888888888777773
No 388
>PF12854 PPR_1: PPR repeat
Probab=82.58 E-value=4.4 Score=20.66 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q psy1039 11 KLKESGNSAFKQGDYETALDFY 32 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~ 32 (206)
.|..+-..+.+.|+.++|.+.|
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~ 30 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELF 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHH
Confidence 4444444555555555554444
No 389
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=82.42 E-value=3.6 Score=25.67 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALK 37 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 37 (206)
+..+...|...=..|+|++|+.+|..+++
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444555555555555555555555544
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.83 E-value=7.6 Score=28.63 Aligned_cols=49 Identities=8% Similarity=0.163 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC
Q psy1039 25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP 78 (206)
Q Consensus 25 ~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p 78 (206)
.+..++..++.++.. |+ +..+.+++.++...|+.++|.....++..+.|
T Consensus 127 l~~~~~~a~~~l~~~-P~----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRR-PD----PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444556677777777 85 78888999999999999999999999999999
No 391
>KOG3783|consensus
Probab=81.30 E-value=29 Score=30.06 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhh------CC-CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------VP-DDPKALFRRCQAYEAIGK-FEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p-~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 114 (206)
.--++.+|.++..+|+...|..+|..+++- +| --|.++|.+|..+..+|. ..+|.+.+.+|-....+.
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 334667999999999999999999988732 22 136799999999999999 999999999998766443
No 392
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.15 E-value=31 Score=30.86 Aligned_cols=52 Identities=8% Similarity=-0.004 Sum_probs=39.0
Q ss_pred HHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 58 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
...++++.+..++...-.-........|++|.++...|+-++|...|+++..
T Consensus 323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4677777777777664333335677899999998889999999999988643
No 393
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.91 E-value=11 Score=23.43 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSK 72 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~ 72 (206)
.+..+|.-+-+.|++.+|+.+|+.
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~ 31 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKK 31 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344444444445555555444433
No 394
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.70 E-value=25 Score=27.46 Aligned_cols=43 Identities=5% Similarity=-0.184 Sum_probs=28.7
Q ss_pred HHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039 141 KVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV 184 (206)
Q Consensus 141 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 184 (206)
++..+- +.-. +.++.......|..+..-+.+.+|..++.-...
T Consensus 75 ~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~ 118 (260)
T PF04190_consen 75 AAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD 118 (260)
T ss_dssp HHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H
T ss_pred HHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 344454 3333 468889999999999999999999888874433
No 395
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.07 E-value=4 Score=25.34 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVT 39 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 39 (206)
.+..+...|..-=..|+|++|+.+|..+++..
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 34455555555566677777777777776654
No 396
>KOG0276|consensus
Probab=79.77 E-value=28 Score=30.76 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=47.9
Q ss_pred HHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 31 FYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 31 ~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
+.++|+++. ++ +.-.+.++ .+.|+++.|.+...+ .++..=|-.||.+....|++..|.+++.++..+
T Consensus 629 ~~e~AL~~s-~D----~d~rFela---l~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 629 MKEQALELS-TD----PDQRFELA---LKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred chHhhhhcC-CC----hhhhhhhh---hhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 345566666 64 33334333 567888888766543 345667889999999999999999999988654
No 397
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=79.35 E-value=5.7 Score=24.49 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKV 38 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 38 (206)
+..+...|...=..|+|++|+.+|..+++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555566666666666666666553
No 398
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=79.18 E-value=5.1 Score=20.11 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHhc
Q psy1039 11 KLKESGNSAFKQ----GDYETALDFYTKALKV 38 (206)
Q Consensus 11 ~~~~~g~~~~~~----g~~~~A~~~~~~al~~ 38 (206)
+.+.+|..+..- .+..+|+.+|+++.+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 455556555532 2566666666666544
No 399
>KOG0128|consensus
Probab=78.75 E-value=31 Score=31.46 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=72.8
Q ss_pred ccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 60 QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQ 139 (206)
Q Consensus 60 ~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 139 (206)
.+.-.+=+..+..-+.+++.+..++..+-.++...|++++-...=...-++.|.++.++.....-...+.......
T Consensus 92 ~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~---- 167 (881)
T KOG0128|consen 92 EGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERK---- 167 (881)
T ss_pred cccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchh----
Confidence 3444555666667777788888888888888888888887777767777777877776655544433333332222
Q ss_pred HHHHHHHHHhcCCCCChhhhHHHHhhhhHhcc
Q psy1039 140 NKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAR 171 (206)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (206)
.+..+|.+++.+..+..+|...+..+...+.
T Consensus 168 -~v~~~~ekal~dy~~v~iw~e~~~y~~~~~~ 198 (881)
T KOG0128|consen 168 -EVEELFEKALGDYNSVPIWEEVVNYLVGFGN 198 (881)
T ss_pred -HHHHHHHHHhcccccchHHHHHHHHHHhccc
Confidence 2677888888777777888777777766654
No 400
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=78.72 E-value=8 Score=26.46 Aligned_cols=28 Identities=39% Similarity=0.649 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccC
Q psy1039 14 ESGNSAFKQGDYETALDFYTKALKVTAEE 42 (206)
Q Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~p~ 42 (206)
.+|..+...|++++|..+|-+|+.+. |+
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~-~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVC-PQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTS-SS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC-CC
Confidence 57888888888888888888888888 76
No 401
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=78.28 E-value=19 Score=24.78 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccCc------------HHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy1039 12 LKESGNSAFKQGDYETALDFYTKALKVTAEES------------HERATCLKNRAAVYLKQNQNDKVIEDC 70 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~------------~~~~~~~~~la~~~~~~~~~~~A~~~~ 70 (206)
+-.+|...++.+++-.++-+|++|+.+. .+- ........++|.-+..+|+.+-.+.++
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~s-e~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYL 73 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLS-EEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYL 73 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHH-HHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHH
Confidence 4567888999999999999999998875 220 112223445555555555555444444
No 402
>KOG0276|consensus
Probab=77.78 E-value=12 Score=32.81 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=43.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--------CCHHH------
Q psy1039 18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--------DDPKA------ 83 (206)
Q Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--------~~~~~------ 83 (206)
..++.|+++.|.+ -|.+.+ +..=|..+|.+....+++..|.++|.++..+.. .+...
T Consensus 646 lal~lgrl~iA~~---la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 646 LALKLGRLDIAFD---LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhhhcCcHHHHHH---HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHH
Confidence 3445566666633 333333 344466666666666777777666666543321 12221
Q ss_pred ------HHHHH-HHHHHcCCHHHHHHHHHH
Q psy1039 84 ------LFRRC-QAYEAIGKFEEAYTDAKH 106 (206)
Q Consensus 84 ------~~~la-~~~~~~g~~~~A~~~~~~ 106 (206)
.+++| .+++..|+++++.+.+..
T Consensus 717 ~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 717 LAKKQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHhhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 12223 456777888877776644
No 403
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.66 E-value=40 Score=28.01 Aligned_cols=62 Identities=10% Similarity=-0.056 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH--HHHH--HHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK--ALFR--RCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~--~~~~--la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
.....+..++..++|..|...++.+...-|.... .+.. .|.-+...-++.+|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556788889999999999999998875343333 3333 467788899999999999988764
No 404
>KOG4014|consensus
Probab=77.57 E-value=27 Score=26.05 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHhhh
Q psy1039 9 YNKLKESGNSAF-----KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-------QNDKVIEDCSKSLEI 76 (206)
Q Consensus 9 ~~~~~~~g~~~~-----~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~l 76 (206)
+.+-|..|+.++ ..++...|++.|..+...+ .+.+..++|..++.-. +..+|.+++.++..+
T Consensus 68 ~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n------~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 68 PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN------IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC------CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 344455555554 2446667777777776655 3455566666654432 255677777777665
Q ss_pred CCCCHHHHHHHHHHH
Q psy1039 77 VPDDPKALFRRCQAY 91 (206)
Q Consensus 77 ~p~~~~~~~~la~~~ 91 (206)
+ +..+.+.|...+
T Consensus 142 ~--~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 142 E--DGEACFLLSTMY 154 (248)
T ss_pred C--CchHHHHHHHHH
Confidence 4 334445554443
No 405
>KOG3807|consensus
Probab=77.38 E-value=39 Score=27.73 Aligned_cols=118 Identities=10% Similarity=0.010 Sum_probs=72.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-------------cC------cHHH--HHHHHHHHHHHHH
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-------------EE------SHER--ATCLKNRAAVYLK 59 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-------------p~------~~~~--~~~~~~la~~~~~ 59 (206)
||..||.-+.++..++..-. --..+|...++++++..+ +. ++.+ .-+-..++.|-.+
T Consensus 210 ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARk 287 (556)
T KOG3807|consen 210 ALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARK 287 (556)
T ss_pred HHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHH
Confidence 34566666666655554322 124566677777776442 00 0112 2234568999999
Q ss_pred ccCHHHHHHHHHHHhhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChhHHHH
Q psy1039 60 QNQNDKVIEDCSKSLEIVPDD--PKALFRRCQAYEAIGKFEEAYTDAKHIHRV-EPTNKAIQPV 120 (206)
Q Consensus 60 ~~~~~~A~~~~~~al~l~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~ 120 (206)
+|+..+|+..++...+-.|-. ...+-++-.++..+.-|.+....+-+.-++ .|.+..+...
T Consensus 288 lGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 288 LGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred hhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHH
Confidence 999999999999988877732 234456667777777777776666665544 3444443333
No 406
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.72 E-value=32 Score=26.46 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccC
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEE 42 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~ 42 (206)
.+..++..+-..|+|++.+.++.+++..+ |+
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~-~e 33 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN-PE 33 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTS-S-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC-CC
Confidence 45678888999999999999999999988 74
No 407
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=76.69 E-value=19 Score=24.79 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=19.2
Q ss_pred HccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy1039 59 KQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA 93 (206)
Q Consensus 59 ~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 93 (206)
..+.....+.+++.++..++.++..+..+..++..
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 34556666666666665555555555555555543
No 408
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=76.58 E-value=24 Score=24.87 Aligned_cols=61 Identities=20% Similarity=0.120 Sum_probs=39.7
Q ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039 12 LKESGN-SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 12 ~~~~g~-~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 76 (206)
+..++. .+..+|.-++--+.+....... .. +++.+..+|.+|-+.|...++.+.+.+|.+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~---~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EI---NPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CC---CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 334443 4445666666656666665433 23 6889999999999999999999999998764
No 409
>KOG4521|consensus
Probab=76.26 E-value=15 Score=34.75 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 76 (206)
.+...+.+|.||...|+..+|+..|.+|..-
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhc
Confidence 4556777888888888888888888877643
No 410
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=76.24 E-value=9 Score=23.03 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=11.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHH
Q psy1039 51 KNRAAVYLKQNQNDKVIEDCSKS 73 (206)
Q Consensus 51 ~~la~~~~~~~~~~~A~~~~~~a 73 (206)
...|.-.-..|++++|+..|.++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444444455555555555443
No 411
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.94 E-value=38 Score=26.94 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHhhhCCCCHHHHHHHHHHH------HHcCC
Q psy1039 25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ--NQNDKVIEDCSKSLEIVPDDPKALFRRCQAY------EAIGK 96 (206)
Q Consensus 25 ~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~l~p~~~~~~~~la~~~------~~~g~ 96 (206)
++.-+.+...+++-+ |. +..+|..+--++... ..|..-....++.+..||.|-.+|..+-.+. ....+
T Consensus 90 ldneld~~~~~lk~~-PK---~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~ 165 (328)
T COG5536 90 LDNELDFLDEALKDN-PK---NYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSD 165 (328)
T ss_pred hhcHHHHHHHHHhcC-Cc---hhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchh
Confidence 344566788888888 88 888888888777655 5677777788889999999987766543333 55556
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCChh
Q psy1039 97 FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE--NEQLQNKVHNMFKYVFDTSAPMD 157 (206)
Q Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+....++-..++..++.|..++...-.+....-+...- ...+.....-.+++.+-+|.+..
T Consensus 166 ~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S 228 (328)
T COG5536 166 LKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQS 228 (328)
T ss_pred HHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccc
Confidence 66667777788999999998888764333322221110 11123334556666666555533
No 412
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=75.27 E-value=8.7 Score=19.64 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhc
Q psy1039 25 YETALDFYTKALKV 38 (206)
Q Consensus 25 ~~~A~~~~~~al~~ 38 (206)
+++|+.+|+++.+.
T Consensus 24 ~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 24 YEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHc
Confidence 55666666666554
No 413
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.14 E-value=14 Score=29.25 Aligned_cols=121 Identities=13% Similarity=0.059 Sum_probs=84.4
Q ss_pred cccchhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH------HHccCHHHHHHHHHHH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQ--GDYETALDFYTKALKVTAEESHERATCLKNRAAVY------LKQNQNDKVIEDCSKS 73 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~------~~~~~~~~A~~~~~~a 73 (206)
++.+|.+-..|.-+-..+-.- .+|..-+...++.++.+ |. +...|..+-.+. .....+.+..++-..+
T Consensus 101 lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~D-sr---NyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~ 176 (328)
T COG5536 101 LKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSD-SR---NYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSL 176 (328)
T ss_pred HhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccc-cc---ccceeeeEeeeeecchhhccchhHHHHHHhHHHH
Confidence 455677777777766665544 66777777888889888 76 555555544443 4445566778888889
Q ss_pred hhhCCCCHHHHHHH---HHHHHHcCCH------HHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039 74 LEIVPDDPKALFRR---CQAYEAIGKF------EEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 74 l~l~p~~~~~~~~l---a~~~~~~g~~------~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 126 (206)
+..|+.|..||..+ -...+..|++ .+-....-.++-.+|++.+.+..+.-+..
T Consensus 177 I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~ 238 (328)
T COG5536 177 IETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSS 238 (328)
T ss_pred HhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhc
Confidence 99999999998887 4444455553 44556666677789999988887755543
No 414
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=74.49 E-value=22 Score=23.56 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCC
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK 96 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~ 96 (206)
.......|..-+..|++..|.....++-+..+..+-.+..-|.+-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 44455566666667777777777777765544444445544555555553
No 415
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.33 E-value=7.8 Score=24.08 Aligned_cols=17 Identities=24% Similarity=0.075 Sum_probs=11.0
Q ss_pred HcCCHHHHHHHHHHHHh
Q psy1039 93 AIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 93 ~~g~~~~A~~~~~~al~ 109 (206)
..|+|++|...|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 55666666666666655
No 416
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=74.28 E-value=9.6 Score=23.33 Aligned_cols=29 Identities=31% Similarity=0.545 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKV 38 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 38 (206)
..+...|...=..|++++|+.+|..+++.
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555666666666666666553
No 417
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=74.03 E-value=9.7 Score=23.39 Aligned_cols=26 Identities=42% Similarity=0.640 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 12 LKESGNSAFKQGDYETALDFYTKALK 37 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~~~al~ 37 (206)
+...|...=..|++++|+.+|..+++
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444445555555555444444
No 418
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=73.98 E-value=10 Score=23.47 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKV 38 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 38 (206)
+..+...|...=..|+|++|+.+|..+++.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344455555555666666666666665553
No 419
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=73.63 E-value=52 Score=27.39 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=47.5
Q ss_pred cchhhHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHH--HHHHHHHccCHHHHHHHHHH
Q psy1039 4 NNMNDYNKLKE--SGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKN--RAAVYLKQNQNDKVIEDCSK 72 (206)
Q Consensus 4 ~~p~~~~~~~~--~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~--la~~~~~~~~~~~A~~~~~~ 72 (206)
.+|........ .+..+++.++|..|...|..+++.. +++ ......+.. .|..++..-++.+|.+.+++
T Consensus 123 ~nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~-l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 123 SDPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRL-LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc-cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45655555555 5568999999999999999999876 531 112334444 44455777889999999984
No 420
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=73.59 E-value=67 Score=30.21 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 9 YNKLKESGNSAFKQ----G---DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 9 ~~~~~~~g~~~~~~----g---~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
-++.+..|.+++.+ | .+++|+..|++.-.. |. .+--|.+.|.+|..+|+|++-+..+.-|++..|.++
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 512 YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VG---APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CC---CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 35677777776642 2 467777777775443 44 455588899999999999999999999999999887
Q ss_pred HH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039 82 KA-------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117 (206)
Q Consensus 82 ~~-------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 117 (206)
.. .+++-.+..... ..|....--++..-|.....
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 587 EISRLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEKISS 627 (932)
T ss_pred ccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCcccccc
Confidence 54 333333333322 33545555566667765433
No 421
>PF15469 Sec5: Exocyst complex component Sec5
Probab=73.39 E-value=33 Score=25.02 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=46.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhh
Q psy1039 91 YEAIGKFEEAYTDAKHIHRVEPTN----KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNL 166 (206)
Q Consensus 91 ~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (206)
+...|+|+.++..|.++..+..+. +........+...+.+ ....+++++.+++.+......+...+
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~----------~r~~l~~~L~~~~~s~~~~~~~i~~L 165 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEE----------FREKLWEKLLSPPSSQEEFLKLIRKL 165 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 457899999999999988765333 2222222222222222 23457788888787888888888888
Q ss_pred hHhccc
Q psy1039 167 VVLARE 172 (206)
Q Consensus 167 ~~~~~~ 172 (206)
++++-.
T Consensus 166 l~L~~~ 171 (182)
T PF15469_consen 166 LELNVE 171 (182)
T ss_pred HhCCCC
Confidence 888654
No 422
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=71.60 E-value=29 Score=29.21 Aligned_cols=109 Identities=12% Similarity=0.172 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-----cHHHHHH--------HHHHHHHHHH-ccC-----HHHH-
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-----SHERATC--------LKNRAAVYLK-QNQ-----NDKV- 66 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-----~~~~~~~--------~~~la~~~~~-~~~-----~~~A- 66 (206)
+........|-.++..|++.+|+..|+..+..- |= ......+ -|-+|..... .+. .++.
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i-~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k 280 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSI-PLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK 280 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-heeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence 344455668999999999999999999998865 41 1111111 1223322211 111 1122
Q ss_pred ----HHHHHHHhhhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039 67 ----IEDCSKSLEIVPDDPKALFRRC-QAYEAIGKFEEAYTDAKHIHRVEPTNKA 116 (206)
Q Consensus 67 ----~~~~~~al~l~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~ 116 (206)
+..|-....+.|.+...-++.| ...++.++|..|....++.+++.|....
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 1222223345555444444445 3456779999999999999999987643
No 423
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.34 E-value=9 Score=18.21 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=10.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q psy1039 15 SGNSAFKQGDYETALDFYTKA 35 (206)
Q Consensus 15 ~g~~~~~~g~~~~A~~~~~~a 35 (206)
+=..|.+.|++++|.+.|.+-
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 334445555555555555443
No 424
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=70.93 E-value=46 Score=28.48 Aligned_cols=75 Identities=11% Similarity=-0.111 Sum_probs=49.2
Q ss_pred HHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 31 FYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 31 ~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
-++.-++-+ |+ +...|+.+-..+..+|.+++-.+.|++...-.|--+.+|...-..-....+|..-...|.+|+.
T Consensus 30 rLRerIkdN-Pt---nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 30 RLRERIKDN-PT---NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHhhcC-ch---hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 344455556 76 7777777777777777787777777777776666655555443333444566666666666665
No 425
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=70.91 E-value=62 Score=27.16 Aligned_cols=100 Identities=18% Similarity=0.106 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC--cHHHHHHHHHHHHHHHHccCH--------------HHHHHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEE--SHERATCLKNRAAVYLKQNQN--------------DKVIEDCSKS 73 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~--~~~~~~~~~~la~~~~~~~~~--------------~~A~~~~~~a 73 (206)
.....+|..++..|+|+.|...|+.+..=...+ -...+.+....|.|.+..+.. +.|...|.++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 456789999999999999999999987743112 123455666677777777632 3333444442
Q ss_pred ----hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 74 ----LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 74 ----l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
....+.-..+.+..+.++...|.+.+|...+-+...
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~ 328 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTS 328 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 111223345666778888888888887776665554
No 426
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=70.55 E-value=11 Score=23.31 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALK 37 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 37 (206)
..+...|...=..|+|++|+.+|..+++
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444444445555555555555544
No 427
>KOG1811|consensus
Probab=69.46 E-value=55 Score=29.13 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCC
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-PKALFRRCQAYEAI--GKFEEAYTDAKHIHRVEP 112 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p 112 (206)
...+|...|.+.++++++..|..-|.+++++...+ +++.+.+-..-..- .+......+++...+-.|
T Consensus 586 ~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dVq~Vrem~dhlak~ap 655 (1141)
T KOG1811|consen 586 TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDVQDVREMLDHLAKPAP 655 (1141)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchHHHHHHHHHHhccCCc
Confidence 56789999999999999999999999999987543 55555443322221 234455555655554444
No 428
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=69.23 E-value=52 Score=26.06 Aligned_cols=117 Identities=8% Similarity=-0.012 Sum_probs=75.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHH--HHHccCH----HHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 15 SGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAV--YLKQNQN----DKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~la~~--~~~~~~~----~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
.-..++..|+|++--..+.+..... .+. ..... |+..-.. .+.+... ..-.+.++.=++-.|++..+++..
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~-~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~ 83 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAW-LQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAM 83 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhh-hhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHH
Confidence 3456788899999888888876543 210 00111 2211111 2222211 134445555578899999998888
Q ss_pred HHHHHHcC----------------------CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039 88 CQAYEAIG----------------------KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 88 a~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 133 (206)
|..+.... ..+.|...+.++++++|....+...+.++-..+++..-
T Consensus 84 g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~W 151 (277)
T PF13226_consen 84 GMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDW 151 (277)
T ss_pred HHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchH
Confidence 87766552 23778888999999999999998888887777776544
No 429
>KOG4151|consensus
Probab=68.92 E-value=77 Score=28.80 Aligned_cols=80 Identities=18% Similarity=0.104 Sum_probs=63.9
Q ss_pred chhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 5 NMNDYNKLKESGNSAFK--QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
++..+....+.+.+++. .|+|..++.-..-++... |. ...++..++.+|...++++-|++...-.....|.+..
T Consensus 87 ~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~-p~---i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 87 HHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ-PR---ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred chhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc-ch---HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 34555566666666655 568999999999999998 98 7888999999999999999999998888899999865
Q ss_pred HHHHHH
Q psy1039 83 ALFRRC 88 (206)
Q Consensus 83 ~~~~la 88 (206)
+.-...
T Consensus 163 ~~eif~ 168 (748)
T KOG4151|consen 163 ASEIFE 168 (748)
T ss_pred HHHHHH
Confidence 544333
No 430
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.54 E-value=16 Score=22.72 Aligned_cols=23 Identities=4% Similarity=-0.057 Sum_probs=10.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHh
Q psy1039 52 NRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 52 ~la~~~~~~~~~~~A~~~~~~al 74 (206)
..|.-.-..|+|.+|+.+|..++
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 33333334455555555554444
No 431
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=68.42 E-value=32 Score=23.74 Aligned_cols=65 Identities=9% Similarity=0.055 Sum_probs=46.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHH----HHHhcC
Q psy1039 51 KNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---------------PKALFRRCQAYEAIGKFEEAYTDAK----HIHRVE 111 (206)
Q Consensus 51 ~~la~~~~~~~~~~~A~~~~~~al~l~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~----~al~~~ 111 (206)
..+|...++.+++-.++-.|++|+.+..+- .-...++|.-+...|+-+-..++++ +++.+-
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLi 84 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLI 84 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Confidence 456777778888888888888877552211 2357789999999999998888885 455566
Q ss_pred CCCh
Q psy1039 112 PTNK 115 (206)
Q Consensus 112 p~~~ 115 (206)
|..+
T Consensus 85 PQCp 88 (140)
T PF10952_consen 85 PQCP 88 (140)
T ss_pred cCCC
Confidence 7654
No 432
>KOG4459|consensus
Probab=68.17 E-value=59 Score=27.61 Aligned_cols=121 Identities=14% Similarity=0.153 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-cHHHHHHHHH----------------HHHH-HHHccCHHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKN----------------RAAV-YLKQNQNDKVIEDC 70 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~----------------la~~-~~~~~~~~~A~~~~ 70 (206)
....|.-|...+..++|.+++..++++|+.. -. +.....+..+ -|.+ ...-|.+-+-..+.
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~-~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl 109 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLF-RALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACL 109 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHH-HHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999854 10 0000001000 0000 01112222222222
Q ss_pred HHHh---hhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039 71 SKSL---EIVPDD----------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (206)
Q Consensus 71 ~~al---~l~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 130 (206)
.++. --.|.. ..+|..+-.+|++.|.+..|++.-...+-.+|++..+..++..-..+++.
T Consensus 110 ~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~ 182 (471)
T KOG4459|consen 110 RRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGV 182 (471)
T ss_pred HHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCC
Confidence 3322 222222 24677788999999999999999999999999999888887665544443
No 433
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.53 E-value=37 Score=23.25 Aligned_cols=83 Identities=11% Similarity=-0.019 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHhccccCc-HH-HHHHHHHHHHHHHHccCHHHHHHHHHHHh--hhCCCCHHHHHHHHHHHHHcCCHH
Q psy1039 23 GDYETALDFYTKALKVTAEES-HE-RATCLKNRAAVYLKQNQNDKVIEDCSKSL--EIVPDDPKALFRRCQAYEAIGKFE 98 (206)
Q Consensus 23 g~~~~A~~~~~~al~~~~p~~-~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al--~l~p~~~~~~~~la~~~~~~g~~~ 98 (206)
|.-..-...++++++.. .+. .. +-.-+..+-..|...-. .+.+.|..+. .+.-..+..|..-|..+...|+++
T Consensus 40 ~~~~~L~~lLer~~~~f-~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~ 116 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKF-KDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFK 116 (126)
T ss_dssp CCCHHHHHHHHHHHHHH-TTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HH
T ss_pred CchhHHHHHHHHHHHHH-hhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHH
Confidence 34445566777777765 321 00 11123333333333333 7777887765 455667888888899999999999
Q ss_pred HHHHHHHHHH
Q psy1039 99 EAYTDAKHIH 108 (206)
Q Consensus 99 ~A~~~~~~al 108 (206)
+|.+.|++++
T Consensus 117 ~A~~I~~~Gi 126 (126)
T PF08311_consen 117 KADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999998875
No 434
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=67.49 E-value=15 Score=23.10 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=7.7
Q ss_pred HccCHHHHHHHHHHHh
Q psy1039 59 KQNQNDKVIEDCSKSL 74 (206)
Q Consensus 59 ~~~~~~~A~~~~~~al 74 (206)
..|+.++|+.+|++++
T Consensus 20 E~g~~e~Al~~Y~~gi 35 (79)
T cd02679 20 EWGDKEQALAHYRKGL 35 (79)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 3344555555555444
No 435
>KOG1538|consensus
Probab=67.30 E-value=60 Score=29.18 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=30.0
Q ss_pred CCCChhhhHHHHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039 152 TSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLK 193 (206)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (206)
++--.......++++.+..+|.+|-+.+-|-..-+..+.+++
T Consensus 800 Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 800 PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred ccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 334455667889999999999988888887777444444443
No 436
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=66.44 E-value=94 Score=27.49 Aligned_cols=89 Identities=13% Similarity=0.140 Sum_probs=66.2
Q ss_pred HHHHHHHHH---HHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 11 KLKESGNSA---FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 11 ~~~~~g~~~---~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
.+..+|.+. -+....+.+....+.-+... .. ++...+..+..+-..+..++|-..|++.+..+|+ ..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 80 (578)
T PRK15490 7 KLAALGKTCLTLKQEKKLAQAVALIDSELPTE-AL---TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEY 80 (578)
T ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHhCCcc-ch---hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHH
Confidence 344445443 34445555655555544333 33 6677788888888999999999999999999999 588888
Q ss_pred HHHHHHcCCHHHHHHHHH
Q psy1039 88 CQAYEAIGKFEEAYTDAK 105 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~ 105 (206)
|..+.+.|-...|...++
T Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 81 ARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHhhhhhhHHHHHHH
Confidence 999999999999988877
No 437
>PF15469 Sec5: Exocyst complex component Sec5
Probab=66.08 E-value=49 Score=24.11 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039 95 GKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (206)
Q Consensus 95 g~~~~A~~~~~~al~~~p~~~~~~~~l 121 (206)
...++...+....++++|+..+++..+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 456667777777777887766666554
No 438
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=65.33 E-value=15 Score=17.80 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=9.8
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q psy1039 17 NSAFKQGDYETALDFYTKAL 36 (206)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~al 36 (206)
..|.+.|++++|...|.+..
T Consensus 8 ~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 8 DGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555554443
No 439
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=65.31 E-value=2.1 Score=37.22 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH--HhhhCCCC-
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKAL--KVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK--SLEIVPDD- 80 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~--al~l~p~~- 80 (206)
+.........+..++..|++..|...+...- .+. |. .........|.+....|++.+|+..+.. ...+.+..
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~-~~--q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~ 97 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLS-PS--QQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQ 97 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCC-hH--HHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHH
Confidence 3445556677788999999999999988765 233 32 1455666788888999999999999874 22222222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 112 (206)
...+..+|.++...|++-+|...+-..-.+-+
T Consensus 98 ~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 98 ARYHQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 33445568999999999888877655544433
No 440
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=64.21 E-value=20 Score=29.78 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH
Q psy1039 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF 97 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 97 (206)
+..|+.++++|.. .+.|..|..+|.+++.+|+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 5577777777665 56788899999999888864
No 441
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=64.07 E-value=16 Score=17.90 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=15.7
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHH
Q psy1039 67 IEDCSKSLEIVPDDPKALFRRCQAYE 92 (206)
Q Consensus 67 ~~~~~~al~l~p~~~~~~~~la~~~~ 92 (206)
++....++..+|.+..+|..+-.+..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 44556666677777666666554443
No 442
>PF13041 PPR_2: PPR repeat family
Probab=63.93 E-value=22 Score=19.45 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=8.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q psy1039 15 SGNSAFKQGDYETALDFYTKAL 36 (206)
Q Consensus 15 ~g~~~~~~g~~~~A~~~~~~al 36 (206)
+=..+.+.|++++|.+.|++..
T Consensus 9 li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHHH
Confidence 3333444444444444444433
No 443
>KOG1464|consensus
Probab=63.68 E-value=36 Score=27.10 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=40.1
Q ss_pred HcCCHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039 21 KQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75 (206)
Q Consensus 21 ~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 75 (206)
+....++|+..|++++++. |+. .-...++-..-..++++++|.+-.+.|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelE-gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELE-GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcc-cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3447899999999999998 762 12334555666778888888888888877654
No 444
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=63.42 E-value=21 Score=25.39 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.4
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhccccC
Q psy1039 14 ESGNSAFKQG-DYETALDFYTKALKVTAEE 42 (206)
Q Consensus 14 ~~g~~~~~~g-~~~~A~~~~~~al~~~~p~ 42 (206)
.+|..+...| ++.+|..+|-+|+.++ |+
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc-~q 123 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVY-PQ 123 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhC-CC
Confidence 5788888888 8899999999999998 87
No 445
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=63.23 E-value=26 Score=28.77 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=41.2
Q ss_pred cCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1039 61 NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKH 106 (206)
Q Consensus 61 ~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 106 (206)
+..-+|+-.++.++...|.|....+.+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4466899999999999999999999999999999999999888753
No 446
>KOG4056|consensus
Probab=62.14 E-value=27 Score=24.44 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccC
Q psy1039 14 ESGNSAFKQGDYETALDFYTKALKVTAEE 42 (206)
Q Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~p~ 42 (206)
.+|..++.+|+++++..++-.|+.+. |.
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vc-gq 113 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVC-GQ 113 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhc-CC
Confidence 57888888999999999999999888 87
No 447
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=62.01 E-value=82 Score=25.30 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 75 (206)
......+......|..+.|+..++..+... ++..........++..+...|.++-|...|....+
T Consensus 214 ~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~-~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 214 EELREEARALAAEGGLEAALQRLQQRLAQA-REPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcccC-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455777778888888888888765544 43323444555577777777888888888777653
No 448
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=61.95 E-value=1.4e+02 Score=27.83 Aligned_cols=103 Identities=14% Similarity=0.038 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD- 80 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~- 80 (206)
++......+......+++.+|..+..++-.-- |. ....+...-..|......|++++|+...+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l-~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFL-KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHh-CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 34455667888888999999988887776654 32 23455666678888899999999999999999887765
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1039 81 ----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111 (206)
Q Consensus 81 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 111 (206)
.-++...|.+..-.|++++|..+...+.+..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3467788999999999999999998888763
No 449
>KOG4563|consensus
Probab=61.20 E-value=33 Score=28.22 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-----cHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-----SHERATCLKNRAAVYLKQNQNDKVIEDC 70 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~ 70 (206)
....+...|+-++..++++.|...|..|..+. .. +..+...++..|..++..+++....-.+
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~-~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELS-DEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45677889999999999999999999999986 32 2235677888888888888877655443
No 450
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.99 E-value=78 Score=24.72 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHH----------------hhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKS----------------LEIVPDDPKALFRRCQ-AYEAIGKFEEAYTDAKHIH 108 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~a----------------l~l~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al 108 (206)
++.++..+|..+++-|++.+|..+|-.. .+-.|...+.+..+|. .|..+++...|...+....
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4556666666666666666665555211 1234556666666664 4777899999988877766
Q ss_pred hc----CCC----------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcc
Q psy1039 109 RV----EPT----------NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAR 171 (206)
Q Consensus 109 ~~----~p~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (206)
+. +|+ +.+..+-+..+....+... ...=......|+..+. +|.=......+++.|+....
T Consensus 169 ~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~---~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 169 SKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDN---LPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT----HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred HHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCc---HHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence 55 442 3333444433433333321 1122234455555554 44555666677777776543
No 451
>KOG1538|consensus
Probab=60.76 E-value=70 Score=28.81 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=11.0
Q ss_pred HHHHHHHcCCHHHHHHH
Q psy1039 15 SGNSAFKQGDYETALDF 31 (206)
Q Consensus 15 ~g~~~~~~g~~~~A~~~ 31 (206)
.+..+...|+.++|+..
T Consensus 709 AAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEI 725 (1081)
T ss_pred HHHHhhcccchhhhhhh
Confidence 45566667777777664
No 452
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=59.51 E-value=22 Score=22.30 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=20.2
Q ss_pred cCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 61 NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 61 ~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
+.|+.|.+..++++..+ ..|+.++|+..|++++.
T Consensus 3 ~~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 34666666666666554 34566666666665554
No 453
>KOG1464|consensus
Probab=59.18 E-value=43 Score=26.68 Aligned_cols=85 Identities=9% Similarity=0.065 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-----HHH
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----PKA 83 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-----~~~ 83 (206)
.+...-..|-...+-..-...|++++.+.. |++..-..+...-|..+++-|+|++|-.+|-.|++..... ..+
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttC 272 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC 272 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHH
Confidence 344444556666666677778999988753 5533344445555677888899999999999999764332 222
Q ss_pred --HHHHHHHHHHcC
Q psy1039 84 --LFRRCQAYEAIG 95 (206)
Q Consensus 84 --~~~la~~~~~~g 95 (206)
|+.+|..+...|
T Consensus 273 LKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 273 LKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHcC
Confidence 445566666554
No 454
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=59.09 E-value=32 Score=23.52 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 118 (206)
.+|..+...|++++|..+|-+|+...|+=.+..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 578888888999999999999999888754443
No 455
>KOG3616|consensus
Probab=58.22 E-value=1.6e+02 Score=27.29 Aligned_cols=81 Identities=20% Similarity=0.127 Sum_probs=51.1
Q ss_pred HHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH--------------------hhhCC
Q psy1039 19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS--------------------LEIVP 78 (206)
Q Consensus 19 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a--------------------l~l~p 78 (206)
....|+|+.|...++ .++.. |+ ....|..++..-+..|+.--|..+|... +++..
T Consensus 454 aid~~df~ra~afle-s~~~~-~d---a~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~gg 528 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLE-SLEMG-PD---AEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGG 528 (1636)
T ss_pred ccccCchHHHHHHHH-hhccC-cc---HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCC
Confidence 346788888876554 45666 77 6666777777666666665555554321 22233
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDA 104 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~ 104 (206)
+-.+.|-.++...+.-.+|.+|...|
T Consensus 529 dgt~fykvra~lail~kkfk~ae~if 554 (1636)
T KOG3616|consen 529 DGTDFYKVRAMLAILEKKFKEAEMIF 554 (1636)
T ss_pred CCchHHHHHHHHHHHHhhhhHHHHHH
Confidence 44555666777777777788887666
No 456
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=57.49 E-value=53 Score=21.71 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
..|......|+|..|.+...++-+.
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3466777788888888888888554
No 457
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.92 E-value=33 Score=25.49 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=30.1
Q ss_pred HHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1039 56 VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDA 104 (206)
Q Consensus 56 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~ 104 (206)
.+.+.|.|++|.+.+++.+. +|++......|..+-.....+..-+..|
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnF 167 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNF 167 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhc
Confidence 44567777777777777777 7777666555555555555554444443
No 458
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=55.31 E-value=24 Score=17.08 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=11.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHH
Q psy1039 51 KNRAAVYLKQNQNDKVIEDCSKS 73 (206)
Q Consensus 51 ~~la~~~~~~~~~~~A~~~~~~a 73 (206)
..+-.++.+.|+++.|...|+..
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444455555555555555543
No 459
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=55.14 E-value=28 Score=17.73 Aligned_cols=15 Identities=7% Similarity=-0.039 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhhhC
Q psy1039 63 NDKVIEDCSKSLEIV 77 (206)
Q Consensus 63 ~~~A~~~~~~al~l~ 77 (206)
++.|...|++.+...
T Consensus 3 ~dRAR~IyeR~v~~h 17 (32)
T PF02184_consen 3 FDRARSIYERFVLVH 17 (32)
T ss_pred HHHHHHHHHHHHHhC
Confidence 344444444444444
No 460
>KOG1497|consensus
Probab=54.73 E-value=1.2e+02 Score=24.84 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCh
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----D----PKALFRRCQAYEAIGKFEEAYTDAKHIHR--VEPTNK 115 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----~----~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 115 (206)
-..+...+|..|.+-++|..|.+.+.- +.++.. + ...+.++|.+|...++..+|..+..++-- .+..|+
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne 180 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNE 180 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCH
Confidence 456788899999999999999776643 333221 1 23577889999999999999988877543 345777
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy1039 116 AIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~ 133 (206)
........++.+.-+...
T Consensus 181 ~Lqie~kvc~ARvlD~kr 198 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDYKR 198 (399)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777666665554433
No 461
>KOG4014|consensus
Probab=54.66 E-value=89 Score=23.42 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHHHHH-----cCC--HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC
Q psy1039 6 MNDYNKLKESGNSAFK-----QGD--YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP 78 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~-----~g~--~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p 78 (206)
.+.+.+-..+|.++.. .++ ..+|.+++.++.++. +.++.+++...|+.- -++ +....|
T Consensus 102 ~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~------~~~aCf~LS~m~~~g--~~k-------~~t~ap 166 (248)
T KOG4014|consen 102 ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE------DGEACFLLSTMYMGG--KEK-------FKTNAP 166 (248)
T ss_pred cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC------CchHHHHHHHHHhcc--chh-------hcccCC
Confidence 3556666777777664 233 678999999999987 456677777766432 122 122233
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 126 (206)
.-... ..++..+.-..+.+.|.+.--++-++ +++.+-.++++++.
T Consensus 167 ~~g~p-~~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyk 211 (248)
T KOG4014|consen 167 GEGKP-LDRAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYK 211 (248)
T ss_pred CCCCC-cchhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHH
Confidence 11111 11344455566777777666555544 45555556665553
No 462
>KOG2034|consensus
Probab=54.39 E-value=53 Score=30.28 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=30.3
Q ss_pred HHHHHHccCHHHHHHHHHHHhhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 54 AAVYLKQNQNDKVIEDCSKSLEIVPDDP-KALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 54 a~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
-.+|...|+|+.|+++++.. |+.. -++...|..+++.++|..|.++|-+.
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34566777777777666443 3322 24556677777777777776666443
No 463
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=52.66 E-value=84 Score=27.61 Aligned_cols=45 Identities=9% Similarity=-0.018 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 65 KVIEDCSKSLEI-----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 65 ~A~~~~~~al~l-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
.+++.|++|+.. +..+.-+|..+|..+++.++|.+|+..+-.+-.
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555533 345677888899999999999999999877654
No 464
>KOG2114|consensus
Probab=52.52 E-value=1.3e+02 Score=27.90 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVT 39 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 39 (206)
.+.+...|..++.+|++++|...|-+.+..-
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 4455666777777777777777777776654
No 465
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=52.28 E-value=45 Score=20.40 Aligned_cols=11 Identities=0% Similarity=0.069 Sum_probs=4.4
Q ss_pred ccCHHHHHHHH
Q psy1039 60 QNQNDKVIEDC 70 (206)
Q Consensus 60 ~~~~~~A~~~~ 70 (206)
.|++++|+..|
T Consensus 19 ~g~y~eA~~~Y 29 (75)
T cd02678 19 AGNYEEALRLY 29 (75)
T ss_pred cCCHHHHHHHH
Confidence 33444443333
No 466
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.89 E-value=66 Score=21.98 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 27 TALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 27 ~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
.+.+.|........ .. .+..|...|..+...|++.+|.+.|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~---~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTK---LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTT---BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHH---HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 55555555544321 23 67788899999999999999999998865
No 467
>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.
Probab=51.04 E-value=1.2e+02 Score=23.92 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP 78 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p 78 (206)
.++.+.......+...........|..++..+ +.+.+...|..|..+.-.+.++..+-..++-+.
T Consensus 114 ~~e~~~~~~~~~~~L~~l~~~~~rf~~~l~~C------s~E~f~k~g~~~~Em~~~Er~lD~~IdlLk~d~ 178 (274)
T PF12455_consen 114 VAEQLSFACRLIYKLSWLQALCHRFESALSRC------SVEQFLKMGGLYPEMEPVERALDSWIDLLKKDQ 178 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555555555666666667777777777777 466778888888888888888888877776654
No 468
>KOG3677|consensus
Probab=50.92 E-value=37 Score=28.57 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=37.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-------KALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
+.++-..+.-+|+ .+| -.+.+.++|... .+-|..|.+|.-+++|.+|++.|..++-
T Consensus 238 L~GLlR~H~lLgD-hQa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 238 LLGLLRMHILLGD-HQA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHHhhh-hHh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666788 455 445566766431 1236789999999999999998876654
No 469
>KOG3540|consensus
Probab=50.72 E-value=1.6e+02 Score=25.33 Aligned_cols=94 Identities=11% Similarity=0.179 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHh--cc
Q psy1039 95 GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVL--AR 171 (206)
Q Consensus 95 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~ 171 (206)
.+-..|...|..|++.+|.-+ +..+ ..++.+.++..--......+|+-++. +|........-.-..+.. .+
T Consensus 326 drrR~Ale~ylaALqa~pprp--~~Vl----~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkAaqmk~qV~thLrvIeeR 399 (615)
T KOG3540|consen 326 DRRRDALENYLAALQADPPRP--HRVL----QALKRYVRAEQKDRMHTLRHYQHVLAVDPKKAAQMKSQVMTHLRVIEER 399 (615)
T ss_pred hHHHHHHHHHHHHHhcCCCCh--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999877 2222 23333322222112224667777766 554433333222222222 22
Q ss_pred cchhhHHHHhcch-----HHHHHHHhcc
Q psy1039 172 EMSGAEMLLKSGV-----AKQINTLLKC 194 (206)
Q Consensus 172 ~~~a~~~~~~~~~-----~~~~~~~~~~ 194 (206)
.-..+..+.+.|- ...|.+++.+
T Consensus 400 ~NqsLslL~~~P~vaqeirdev~ell~~ 427 (615)
T KOG3540|consen 400 INQSLSLLYDVPAVAQEIRDEVDELLQV 427 (615)
T ss_pred hcchhHHHhcChHHHHHHHHHHHHHHhh
Confidence 3455556666665 4455566553
No 470
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=50.71 E-value=1.5e+02 Score=24.79 Aligned_cols=55 Identities=13% Similarity=-0.090 Sum_probs=42.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHhhhCCCC-----HHHHH--HHHHHHHHcCCHHHHHHHHHH
Q psy1039 52 NRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----PKALF--RRCQAYEAIGKFEEAYTDAKH 106 (206)
Q Consensus 52 ~la~~~~~~~~~~~A~~~~~~al~l~p~~-----~~~~~--~la~~~~~~g~~~~A~~~~~~ 106 (206)
.++..++..++|..|...|..++...+.. ...+. ..|..+...-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35667889999999999999999775422 22333 346677888999999999985
No 471
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.50 E-value=54 Score=24.38 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=42.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCC
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR-----MQENEQLQNKVHNMFKYVFDT 152 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 152 (206)
-.+....|.|++|.+.+++.+. +|++..-...|..+-...... .-....+.+.+..+++..++.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnFSy~~~~~ki~~~ve~~~~~ 186 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNFSYSHFMQKMKSYVELVLDE 186 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhccHHHHHHHHHHHHHHHhcc
Confidence 4577899999999999999999 888776655555543322111 111233445567777777773
No 472
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=49.91 E-value=61 Score=20.10 Aligned_cols=12 Identities=0% Similarity=0.041 Sum_probs=5.1
Q ss_pred HccCHHHHHHHH
Q psy1039 59 KQNQNDKVIEDC 70 (206)
Q Consensus 59 ~~~~~~~A~~~~ 70 (206)
..|+|++|+.+|
T Consensus 18 ~~g~y~eAl~~Y 29 (77)
T cd02683 18 QEGRFQEALVCY 29 (77)
T ss_pred HhccHHHHHHHH
Confidence 334444444444
No 473
>KOG2561|consensus
Probab=49.56 E-value=1.7e+02 Score=25.10 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--------HHHHHHHHHHHHHHHHccCH----------HHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--------HERATCLKNRAAVYLKQNQN----------DKVIEDC 70 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--------~~~~~~~~~la~~~~~~~~~----------~~A~~~~ 70 (206)
+..++..|..+++...|++|+.++-.|=+.. ... ...+.+-..+--||+.+.+. ..|...|
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F-~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESF-SLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 4567889999999999999999877665543 210 00122222344466666542 2233333
Q ss_pred HHH--------hhhC-CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 71 SKS--------LEIV-PDDP------KALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 71 ~~a--------l~l~-p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
.++ ..+. |..+ ..++.-|.+.+..|+-++|.++++.+..
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 222 2221 2222 2344459999999999999999987655
No 474
>KOG2114|consensus
Probab=48.97 E-value=1.7e+02 Score=27.16 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=42.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-hCCC
Q psy1039 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-IVPD 79 (206)
Q Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-l~p~ 79 (206)
=..+++..-|.-|+...+. ...+ + .....+....|.-++..|+|++|..+|-+.+. ++|.
T Consensus 341 L~iL~kK~ly~~Ai~LAk~-~~~d-~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKS-QHLD-E--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred HHHHHHhhhHHHHHHHHHh-cCCC-H--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 3456677777777766544 2222 2 23677788899999999999999999988874 3553
No 475
>KOG2063|consensus
Probab=48.09 E-value=2.4e+02 Score=26.47 Aligned_cols=171 Identities=13% Similarity=0.091 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cCcHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHhhhCCCCHH-
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQN--DKVIEDCSKSLEIVPDDPK- 82 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~---p~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~l~p~~~~- 82 (206)
..-++.++..|...|++++|++.+....+-.+ +. ....+-..-..+-+.+.- +-..++-.=.+.-+|....
T Consensus 504 ~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~---~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~ 580 (877)
T KOG2063|consen 504 SKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF---QLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQ 580 (877)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHhccccccccc---hhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhhee
Confidence 34678899999999999999999999988330 32 222222333333333333 4455555555555554321
Q ss_pred ----------HHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHH-------HHHHHHH--HH
Q psy1039 83 ----------ALFRRCQA--YEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAIVTKR-------MQENEQL--QN 140 (206)
Q Consensus 83 ----------~~~~la~~--~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~-------~~~~~~~--~~ 140 (206)
.-+....+ ++......-++.+++.++..... +...+..+..++...-.. .+...+. .+
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~re 660 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVRE 660 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHH
Confidence 11122222 34556677788888888886654 566666666665543330 0011111 22
Q ss_pred HHHHHH--------HHhcCCCCChhhhHHHHhhhhHhcccchhhHHHHhc
Q psy1039 141 KVHNMF--------KYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKS 182 (206)
Q Consensus 141 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 182 (206)
+...+. +..+.+-.........+..+..+|++++|+..+...
T Consensus 661 kl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~ 710 (877)
T KOG2063|consen 661 KLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHE 710 (877)
T ss_pred HHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 221111 112221122667777888888999999999988643
No 476
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=47.97 E-value=51 Score=22.06 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVT 39 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 39 (206)
.+..++..|..+...|+.+.|--+|.+.+.+.
T Consensus 37 sa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45556666666667777777766666666543
No 477
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=46.74 E-value=38 Score=28.24 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCH
Q psy1039 25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63 (206)
Q Consensus 25 ~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~ 63 (206)
...|+.++++|..-+ .+..|.++|.++..+|+.
T Consensus 334 ~~~Al~yL~kA~d~d------dPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQDED------DPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccC------ChhHHHHHHHHHhhhhcc
Confidence 456888888887754 466788999888888764
No 478
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=46.56 E-value=1.1e+02 Score=25.24 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=20.5
Q ss_pred HHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039 30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 30 ~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 76 (206)
..+...+..- |+....+.+|.-+|...-..|.++..+..|++|+..
T Consensus 124 ~~L~~li~~I-P~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 124 ATLSDLIKNI-PDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHhcC-chHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 3444444443 433334444444444444444444444444444443
No 479
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=46.40 E-value=99 Score=25.33 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039 23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72 (206)
Q Consensus 23 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 72 (206)
+..-+|+.+++.++..+ |. +......+...|..+|-.+.|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s-~~---n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKS-PH---NYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34567888999999999 98 899999999999999999999999965
No 480
>KOG2062|consensus
Probab=46.21 E-value=1e+02 Score=28.11 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKS 73 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~a 73 (206)
..+-.-....|+.+|+|++|+++.-++
T Consensus 59 ~~AaL~~SKVyy~Lgeye~Al~yAL~a 85 (929)
T KOG2062|consen 59 QLAALLASKVYYYLGEYEDALEYALRA 85 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455677888888888888887665
No 481
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=46.07 E-value=57 Score=21.32 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALK 37 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 37 (206)
.++...+..+....+.|+|++|...+..+-+
T Consensus 13 G~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 13 GNARSKALEALKAAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566666666666666666666555543
No 482
>KOG1076|consensus
Probab=46.04 E-value=2.4e+02 Score=25.78 Aligned_cols=134 Identities=8% Similarity=0.043 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH-H
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR-L 124 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~ 124 (206)
.-....++|.|-++.|-..+|-.++..... ...++-++.-|......+....-..-.++... -|-|.-+...|-. +
T Consensus 529 ~NRtmvQLGLCAFR~Gmi~EaH~~L~dl~s--t~r~kELLgQgv~~~~~he~t~eQe~~eR~rQ-lPyHmHINLELlEcV 605 (843)
T KOG1076|consen 529 FNRTMVQLGLCAFRQGMIKEAHQCLSDLQS--TGRVKELLGQGVLQRRQHEKTAEQEKIERRRQ-LPYHMHINLELLECV 605 (843)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cchHHHHHhhhhhhhhhhccChhhHHHHHhhc-CchhhhccHHHHHHH
Confidence 344566788999999999888777766543 22344455555555555555444445555555 4655433222211 1
Q ss_pred HHHHHHHHH---------------HHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHhc
Q psy1039 125 FAIVTKRMQ---------------ENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLKS 182 (206)
Q Consensus 125 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 182 (206)
+......-+ ..+.+.+..+..-+..+. ||.+..-.+..|..-+..|.+.++.+.+.-|
T Consensus 606 yLtcaMLlEIP~MAA~~~d~Rrr~iSk~frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn 679 (843)
T KOG1076|consen 606 YLTCAMLLEIPYMAAHESDARRRMISKSFRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNN 679 (843)
T ss_pred HHHHHHHHhhhHHhhhhhhhhcccccHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 111111100 011222223444455555 7888888899999999999999888866553
No 483
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=45.97 E-value=59 Score=21.18 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKAL 36 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 36 (206)
.++...+..+....+.|+|++|...+.++-
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a~ 41 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEAD 41 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345555555555566666666655555543
No 484
>KOG4563|consensus
Probab=45.53 E-value=52 Score=27.16 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--------DDPKALFRRCQAYEAIGKFEEAYTDA 104 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--------~~~~~~~~la~~~~~~g~~~~A~~~~ 104 (206)
..-+...|.-.+.+++++.|...|..|..+.. ++..++|..|.+++.++++...+-..
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44567788889999999999999999987743 34678999999999999998876554
No 485
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=44.81 E-value=99 Score=25.73 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=46.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHhhh-CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 53 RAAVYLKQNQNDKVIEDCSKSLEI-VPDD--------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 53 la~~~~~~~~~~~A~~~~~~al~l-~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
+-..|+++++++.+...++-.-.. -|+. ....|.+|.++....++.+|...+..++...|.
T Consensus 183 L~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 183 LFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 566889999999887766543321 1222 235788999999999999999999999998887
No 486
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=44.70 E-value=61 Score=21.27 Aligned_cols=31 Identities=23% Similarity=0.155 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALK 37 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 37 (206)
.++...+..+.-..+.|+|++|.+.+..+-+
T Consensus 15 G~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 15 GDARSKALEALKAAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555666666666666555555433
No 487
>KOG0890|consensus
Probab=44.40 E-value=4.1e+02 Score=28.06 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1039 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111 (206)
Q Consensus 45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 111 (206)
..+.+|.+.|..-...|+++-|..+.-.|.+.. -+.++..+|..+...|+-..|...++..+..+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 378899999999999999999999998888777 56789999999999999999999999999754
No 488
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=43.91 E-value=1.1e+02 Score=21.36 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=21.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 93 AIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 93 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
..-+.+.|.+.|+..++..|++-.++..+-.-...
T Consensus 88 aKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 88 AKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp TTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 34455667778888888888887777666544433
No 489
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.82 E-value=64 Score=18.98 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
+...-..+..+|++++|.+++...
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344445566666666666665544
No 490
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=43.35 E-value=66 Score=21.35 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKA 35 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a 35 (206)
++...+..+....+.|+|++|...+..+
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA 46 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQS 46 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444455555555555555555554444
No 491
>KOG4279|consensus
Probab=43.17 E-value=83 Score=28.88 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=48.3
Q ss_pred HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH---------HHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q psy1039 21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY---------LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY 91 (206)
Q Consensus 21 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~---------~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~ 91 (206)
+.|+-++|+...-.+++...|- .+..+..-|..| ...+..+.|+++|+++++..|.-. +=.+++..+
T Consensus 255 r~GDRakAL~~~l~lve~eg~v---apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL 330 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPV---APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLL 330 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCC---CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHH
Confidence 3578899999888888876232 344454445444 334567899999999999999542 234556666
Q ss_pred HHcCC
Q psy1039 92 EAIGK 96 (206)
Q Consensus 92 ~~~g~ 96 (206)
...|.
T Consensus 331 ~aaG~ 335 (1226)
T KOG4279|consen 331 RAAGE 335 (1226)
T ss_pred HHhhh
Confidence 65554
No 492
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.49 E-value=41 Score=22.38 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALK 37 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 37 (206)
.-+..++..|..+|.+.+|++.+.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3467788888888888888888887766
No 493
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.94 E-value=1.4e+02 Score=25.87 Aligned_cols=102 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccc--------cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----------------
Q psy1039 25 YETALDFYTKALKVTA--------EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---------------- 80 (206)
Q Consensus 25 ~~~A~~~~~~al~~~~--------p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---------------- 80 (206)
+++.+.+.++....++ |. ...-|+++|..=....+-.-..+-|--=...+|.+
T Consensus 372 HDQTLrL~NqG~T~~eI~~~~~lPpa---L~~~W~~rGYyGSvshNarAVy~rYlG~yD~NPa~L~P~~p~d~a~ryV~a 448 (655)
T COG2015 372 HDQTLRLANQGYTGNEIADMIQLPPA---LAREWYTRGYYGSVSHNARAVYNRYLGYYDGNPANLHPLPPVDSAKRYVEA 448 (655)
T ss_pred HHHHHHHHhcCccHHHHHHHhcCChH---HHHhHhhcCccccccccHHHHHHHHhccccCCccccCCCChhHhHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 81 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
.+....+|.--+..|+|.=+.+.+.+++--+|+|..+....+..+.+++
T Consensus 449 mGGadrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLg 500 (655)
T COG2015 449 MGGADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLG 500 (655)
T ss_pred hccHHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhh
No 494
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.18 E-value=80 Score=20.99 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy1039 80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119 (206)
Q Consensus 80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 119 (206)
-+-.+-.+|.+|.+.|+-+.|..-|+.=-.+.|++.....
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmD 110 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMD 110 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHH
Confidence 3556778999999999999999999988888888755443
No 495
>KOG2997|consensus
Probab=40.94 E-value=89 Score=25.43 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE 42 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~ 42 (206)
..+.+++..|...-+.|..-+|+..|..|+++. |+
T Consensus 17 kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~-~d 51 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDGSLYDAINFYRDALQIV-PD 51 (366)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCC-ch
Confidence 346777888888888888888888888888887 76
No 496
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=40.76 E-value=2.6e+02 Score=24.68 Aligned_cols=100 Identities=14% Similarity=0.013 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+...|-+..-+..+-..+-.+..++--...+.+.+... .+ ...++.++.||... ..++-....++.++.+-++.
T Consensus 59 ~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~----kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDv 132 (711)
T COG1747 59 LSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ES----KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV 132 (711)
T ss_pred hhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-ch----HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIH 108 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al 108 (206)
-.-..++..|.. ++-..+...|.+++
T Consensus 133 v~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 133 VIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHHHH-hchhhHHHHHHHHH
No 497
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=40.71 E-value=1.2e+02 Score=20.71 Aligned_cols=49 Identities=22% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy1039 18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71 (206)
Q Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 71 (206)
.+...+.....+.+++..+..+ +. +......+..+|.+. +..+.++.+.
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~-~~---~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLN-SE---NPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccC-cc---chhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445678999999999999987 65 566666677777543 4455555555
No 498
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=40.42 E-value=74 Score=21.56 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKA 35 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a 35 (206)
++...+..|.-..+.|+|++|...+..+
T Consensus 30 ~ArS~~~eAl~~Ak~gdfe~A~~~l~eA 57 (115)
T PRK10454 30 QARSLAYAALKQAKQGDFAAAKAMMDQS 57 (115)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 499
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=40.29 E-value=71 Score=19.77 Aligned_cols=26 Identities=27% Similarity=0.453 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYT 33 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~ 33 (206)
.+..+..-|..|+..|++..|+.++.
T Consensus 34 mA~~Y~~D~~~fl~~gD~v~Ala~~s 59 (75)
T PF04010_consen 34 MAESYLEDGKYFLEKGDYVNALACFS 59 (75)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45666777777777777777766543
No 500
>KOG1920|consensus
Probab=39.89 E-value=3.7e+02 Score=26.23 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred cCCHHHHHHH---------------------HHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 22 QGDYETALDF---------------------YTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 22 ~g~~~~A~~~---------------------~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
.|+|+.|+.+ |..++.+..|+....-.++.-.|.-+...+.+++|.-.|+++-++.-..
T Consensus 893 L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl 972 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKAL 972 (1265)
T ss_pred HHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHH
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhH
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRV 160 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (206)
.++...|+|.+|.....+.-.-...-......|..-....++..++.. .......+ ..
T Consensus 973 --------~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~--------il~e~~sd------~~ 1030 (1265)
T KOG1920|consen 973 --------KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAK--------ILLEYLSD------PE 1030 (1265)
T ss_pred --------HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHH--------HHHHHhcC------HH
Q ss_pred HHHhhhhHhcccchhhHHHHhcchHHHHHHHhcccCChhh
Q psy1039 161 TAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEI 200 (206)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (206)
.....|.....+.+|+....+-..-..|-..+. |.+
T Consensus 1031 ~av~ll~ka~~~~eAlrva~~~~~~d~iee~l~----~al 1066 (1265)
T KOG1920|consen 1031 EAVALLCKAKEWEEALRVASKAKRDDIIEEVLK----PAL 1066 (1265)
T ss_pred HHHHHHhhHhHHHHHHHHHHhcccchHHHHHHh----HHH
Done!