Query psy1039
Match_columns 206
No_of_seqs 184 out of 2065
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 16:37:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.9 1.2E-24 4.2E-29 150.4 16.3 119 3-125 7-125 (126)
2 3vtx_A MAMA; tetratricopeptide 99.9 6.6E-24 2.3E-28 154.7 17.8 179 7-205 3-182 (184)
3 2pl2_A Hypothetical conserved 99.9 2.5E-24 8.7E-29 161.9 15.6 161 6-179 2-174 (217)
4 2pl2_A Hypothetical conserved 99.9 8.6E-24 3E-28 158.9 17.8 166 1-179 31-208 (217)
5 4gyw_A UDP-N-acetylglucosamine 99.9 8.4E-24 2.9E-28 184.1 20.1 166 3-180 3-169 (723)
6 3urz_A Uncharacterized protein 99.9 3.3E-22 1.1E-26 149.3 18.2 162 8-179 3-180 (208)
7 3gyz_A Chaperone protein IPGC; 99.9 2.2E-22 7.4E-27 143.4 14.9 111 1-115 28-138 (151)
8 2h6f_A Protein farnesyltransfe 99.9 1.2E-22 4E-27 165.3 14.9 163 2-176 90-255 (382)
9 4i17_A Hypothetical protein; T 99.9 7.3E-22 2.5E-26 148.6 17.0 155 6-172 4-169 (228)
10 2h6f_A Protein farnesyltransfe 99.9 1.8E-22 6.3E-27 164.1 11.6 172 1-179 123-299 (382)
11 2xcb_A PCRH, regulatory protei 99.9 4.2E-21 1.4E-25 134.8 16.7 128 1-132 10-137 (142)
12 2vgx_A Chaperone SYCD; alterna 99.9 3.1E-21 1.1E-25 136.8 15.8 126 1-130 13-138 (148)
13 4ga2_A E3 SUMO-protein ligase 99.9 2.9E-22 1E-26 142.3 10.5 122 2-127 24-146 (150)
14 4ga2_A E3 SUMO-protein ligase 99.9 2.3E-22 7.8E-27 142.9 8.6 147 14-171 2-149 (150)
15 3upv_A Heat shock protein STI1 99.9 6.8E-21 2.3E-25 130.6 14.3 118 6-127 1-124 (126)
16 2q7f_A YRRB protein; TPR, prot 99.9 4E-20 1.4E-24 139.4 19.1 174 2-193 50-224 (243)
17 3qky_A Outer membrane assembly 99.9 3.6E-20 1.2E-24 142.3 17.8 168 3-179 9-218 (261)
18 3rkv_A Putative peptidylprolyl 99.9 2.5E-20 8.7E-25 133.4 15.3 124 6-133 8-150 (162)
19 1w3b_A UDP-N-acetylglucosamine 99.9 2.6E-20 8.8E-25 150.4 16.9 162 6-179 200-362 (388)
20 2hr2_A Hypothetical protein; a 99.9 1.4E-20 4.6E-25 133.9 13.0 126 7-133 9-154 (159)
21 4i17_A Hypothetical protein; T 99.9 4.5E-20 1.5E-24 138.8 16.7 160 2-165 34-223 (228)
22 3sz7_A HSC70 cochaperone (SGT) 99.8 7.2E-20 2.5E-24 131.3 16.7 115 3-121 5-119 (164)
23 4eqf_A PEX5-related protein; a 99.8 4E-20 1.4E-24 148.0 16.8 166 2-179 92-304 (365)
24 3vtx_A MAMA; tetratricopeptide 99.8 1.7E-20 5.7E-25 136.6 13.1 139 1-151 31-169 (184)
25 3as5_A MAMA; tetratricopeptide 99.8 1.5E-19 5.1E-24 130.2 18.0 171 5-193 4-175 (186)
26 4abn_A Tetratricopeptide repea 99.8 2E-20 6.8E-25 156.1 14.9 164 3-179 96-281 (474)
27 1p5q_A FKBP52, FK506-binding p 99.8 1.3E-19 4.6E-24 144.8 19.0 134 2-136 140-285 (336)
28 2vq2_A PILW, putative fimbrial 99.8 2.8E-19 9.4E-24 132.9 19.5 165 3-179 2-170 (225)
29 4abn_A Tetratricopeptide repea 99.8 1.8E-20 6E-25 156.4 13.9 170 2-184 130-320 (474)
30 1w3b_A UDP-N-acetylglucosamine 99.8 4.8E-20 1.6E-24 148.8 15.7 165 3-179 163-328 (388)
31 4gcn_A Protein STI-1; structur 99.8 7.1E-20 2.4E-24 126.4 13.9 113 5-122 4-123 (127)
32 2y4t_A DNAJ homolog subfamily 99.8 4.6E-19 1.6E-23 145.2 21.0 167 1-179 18-200 (450)
33 2ho1_A Type 4 fimbrial biogene 99.8 3.2E-19 1.1E-23 135.5 18.3 163 5-179 67-232 (252)
34 4gyw_A UDP-N-acetylglucosamine 99.8 2.2E-20 7.7E-25 162.6 13.0 132 1-136 35-166 (723)
35 3hym_B Cell division cycle pro 99.8 1.4E-19 4.7E-24 142.0 15.2 166 2-179 83-259 (330)
36 3uq3_A Heat shock protein STI1 99.8 1.1E-19 3.7E-24 137.9 13.9 164 7-179 36-230 (258)
37 2yhc_A BAMD, UPF0169 lipoprote 99.8 5.4E-19 1.9E-23 133.2 17.1 163 8-179 3-207 (225)
38 3hym_B Cell division cycle pro 99.8 2.4E-19 8.1E-24 140.7 15.6 167 2-180 118-294 (330)
39 2ho1_A Type 4 fimbrial biogene 99.8 4.8E-19 1.6E-23 134.5 16.4 164 4-179 31-198 (252)
40 1fch_A Peroxisomal targeting s 99.8 8.2E-19 2.8E-23 140.0 18.4 166 2-179 91-308 (368)
41 3q49_B STIP1 homology and U bo 99.8 4.9E-19 1.7E-23 122.5 14.8 124 3-130 3-131 (137)
42 3qky_A Outer membrane assembly 99.8 5.4E-19 1.8E-23 135.7 16.5 165 2-175 42-251 (261)
43 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 4E-19 1.4E-23 147.6 16.8 145 3-151 262-418 (457)
44 3u4t_A TPR repeat-containing p 99.8 3.9E-19 1.3E-23 136.4 15.2 168 2-179 30-202 (272)
45 3ieg_A DNAJ homolog subfamily 99.8 5.5E-19 1.9E-23 139.8 16.3 160 8-179 2-177 (359)
46 3ieg_A DNAJ homolog subfamily 99.8 5.3E-19 1.8E-23 139.9 16.1 166 2-179 30-211 (359)
47 4eqf_A PEX5-related protein; a 99.8 4.6E-19 1.6E-23 141.8 15.8 161 7-179 63-270 (365)
48 2vq2_A PILW, putative fimbrial 99.8 1.4E-18 4.9E-23 129.0 17.2 166 2-179 35-205 (225)
49 2q7f_A YRRB protein; TPR, prot 99.8 2.9E-19 1E-23 134.6 13.1 161 7-179 21-182 (243)
50 1xnf_A Lipoprotein NLPI; TPR, 99.8 5E-18 1.7E-22 130.1 20.1 170 5-179 39-238 (275)
51 2pzi_A Probable serine/threoni 99.8 8.1E-20 2.8E-24 158.6 11.2 156 3-171 427-583 (681)
52 4gco_A Protein STI-1; structur 99.8 5E-19 1.7E-23 122.0 12.8 121 34-166 4-125 (126)
53 3uq3_A Heat shock protein STI1 99.8 8.1E-19 2.8E-23 133.0 14.6 161 6-179 2-196 (258)
54 2vyi_A SGTA protein; chaperone 99.8 3.7E-18 1.3E-22 116.2 16.0 124 3-130 6-129 (131)
55 1fch_A Peroxisomal targeting s 99.8 2.7E-18 9.2E-23 137.0 17.2 158 9-179 64-240 (368)
56 2fbn_A 70 kDa peptidylprolyl i 99.8 3.5E-18 1.2E-22 126.1 16.0 131 4-135 33-176 (198)
57 2dba_A Smooth muscle cell asso 99.8 6.7E-18 2.3E-22 117.8 16.5 122 3-125 22-143 (148)
58 3u4t_A TPR repeat-containing p 99.8 2.1E-18 7.1E-23 132.3 15.1 159 8-179 2-165 (272)
59 2lni_A Stress-induced-phosphop 99.8 2E-18 6.7E-23 118.3 13.4 122 3-128 10-131 (133)
60 2pzi_A Probable serine/threoni 99.8 6E-19 2.1E-23 153.1 12.1 163 3-181 388-559 (681)
61 3gyz_A Chaperone protein IPGC; 99.8 3.7E-19 1.3E-23 126.6 8.8 112 28-151 21-132 (151)
62 2r5s_A Uncharacterized protein 99.8 1E-18 3.4E-23 126.8 11.3 163 5-180 2-168 (176)
63 1elw_A TPR1-domain of HOP; HOP 99.8 1.5E-17 5E-22 111.3 16.1 115 7-125 2-116 (118)
64 1hxi_A PEX5, peroxisome target 99.8 1.9E-18 6.6E-23 118.2 11.8 104 9-116 17-120 (121)
65 2y4t_A DNAJ homolog subfamily 99.8 3.7E-18 1.3E-22 139.8 15.3 166 2-179 53-234 (450)
66 2xpi_A Anaphase-promoting comp 99.8 4.6E-18 1.6E-22 144.0 16.2 171 5-179 369-573 (597)
67 3fp2_A TPR repeat-containing p 99.8 2.7E-18 9.2E-23 143.5 14.1 166 3-180 304-486 (537)
68 1a17_A Serine/threonine protei 99.8 4.7E-17 1.6E-21 115.6 18.6 126 6-135 10-137 (166)
69 3as5_A MAMA; tetratricopeptide 99.8 1.4E-17 4.7E-22 119.8 15.3 139 1-151 34-172 (186)
70 3qou_A Protein YBBN; thioredox 99.8 5.9E-18 2E-22 132.3 14.1 164 5-180 113-279 (287)
71 2c2l_A CHIP, carboxy terminus 99.8 2.3E-17 8E-22 128.5 17.3 106 6-115 1-106 (281)
72 2vsy_A XCC0866; transferase, g 99.8 9.9E-18 3.4E-22 142.3 16.3 143 1-155 15-161 (568)
73 2gw1_A Mitochondrial precursor 99.8 3.7E-18 1.3E-22 141.6 13.3 166 2-179 297-472 (514)
74 3cv0_A Peroxisome targeting si 99.8 8.9E-18 3E-22 131.5 14.7 161 7-179 19-195 (327)
75 1na0_A Designed protein CTPR3; 99.8 4.2E-17 1.5E-21 109.9 15.6 119 5-127 4-123 (125)
76 3cv0_A Peroxisome targeting si 99.8 4.1E-18 1.4E-22 133.4 12.0 166 2-179 48-263 (327)
77 2ond_A Cleavage stimulation fa 99.8 1.1E-17 3.8E-22 131.7 14.6 166 2-179 43-226 (308)
78 1ihg_A Cyclophilin 40; ppiase 99.8 3.8E-17 1.3E-21 132.3 17.7 126 6-135 220-361 (370)
79 2if4_A ATFKBP42; FKBP-like, al 99.8 1.4E-18 4.8E-23 139.0 8.9 137 4-151 174-327 (338)
80 3urz_A Uncharacterized protein 99.8 1.4E-17 4.9E-22 124.0 13.7 140 2-154 31-189 (208)
81 2xev_A YBGF; tetratricopeptide 99.8 3.2E-17 1.1E-21 112.1 14.4 116 10-126 3-121 (129)
82 1elr_A TPR2A-domain of HOP; HO 99.8 2.5E-17 8.6E-22 112.1 13.8 120 6-130 1-127 (131)
83 1hh8_A P67PHOX, NCF-2, neutrop 99.8 1.1E-16 3.9E-21 118.6 18.2 146 6-166 3-165 (213)
84 2e2e_A Formate-dependent nitri 99.8 3.7E-17 1.3E-21 118.2 14.9 120 2-125 37-159 (177)
85 3fp2_A TPR repeat-containing p 99.8 3E-17 1E-21 137.1 16.3 158 9-179 243-401 (537)
86 2xpi_A Anaphase-promoting comp 99.8 3.8E-17 1.3E-21 138.4 17.0 173 3-179 333-539 (597)
87 3mkr_A Coatomer subunit epsilo 99.7 4.9E-17 1.7E-21 127.4 16.1 158 5-179 97-257 (291)
88 2ond_A Cleavage stimulation fa 99.7 4.4E-17 1.5E-21 128.3 15.6 174 2-193 91-272 (308)
89 2kck_A TPR repeat; tetratricop 99.7 1.2E-17 4.1E-22 110.8 9.7 108 4-115 1-111 (112)
90 2vgx_A Chaperone SYCD; alterna 99.7 1.7E-17 5.8E-22 117.4 10.8 117 30-158 8-125 (148)
91 2fo7_A Synthetic consensus TPR 99.7 1.2E-16 4E-21 108.9 14.4 130 10-151 2-131 (136)
92 3edt_B KLC 2, kinesin light ch 99.7 4.2E-17 1.4E-21 124.8 13.0 175 5-179 39-275 (283)
93 2vsy_A XCC0866; transferase, g 99.7 7.9E-17 2.7E-21 136.8 15.2 146 22-179 2-151 (568)
94 2gw1_A Mitochondrial precursor 99.7 7.5E-17 2.6E-21 133.8 13.9 162 5-179 233-395 (514)
95 1p5q_A FKBP52, FK506-binding p 99.7 1E-18 3.4E-23 139.7 2.0 148 21-180 125-288 (336)
96 2yhc_A BAMD, UPF0169 lipoprote 99.7 4.8E-16 1.6E-20 117.0 15.4 141 7-156 39-218 (225)
97 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.7E-16 1.9E-20 118.5 16.0 153 17-179 13-167 (275)
98 2xcb_A PCRH, regulatory protei 99.7 1E-16 3.5E-21 112.2 10.5 118 30-159 5-123 (142)
99 3mkr_A Coatomer subunit epsilo 99.7 1.2E-15 4.2E-20 119.4 17.4 158 5-179 61-223 (291)
100 1qqe_A Vesicular transport pro 99.7 5.9E-16 2E-20 121.0 15.4 165 6-179 74-263 (292)
101 3k9i_A BH0479 protein; putativ 99.7 8.4E-17 2.9E-21 109.0 9.0 95 21-119 2-99 (117)
102 3nf1_A KLC 1, kinesin light ch 99.7 3.3E-16 1.1E-20 121.7 13.3 176 4-179 64-301 (311)
103 1wao_1 Serine/threonine protei 99.7 4.8E-17 1.6E-21 135.8 8.6 125 5-133 2-128 (477)
104 1qqe_A Vesicular transport pro 99.7 7.2E-16 2.5E-20 120.5 14.3 164 9-181 37-224 (292)
105 2r5s_A Uncharacterized protein 99.7 4E-16 1.4E-20 113.0 11.9 131 1-136 32-165 (176)
106 3qou_A Protein YBBN; thioredox 99.7 3.2E-16 1.1E-20 122.4 12.0 131 2-136 144-276 (287)
107 4g1t_A Interferon-induced prot 99.7 5.4E-16 1.8E-20 127.9 14.0 170 7-179 49-270 (472)
108 1zu2_A Mitochondrial import re 99.7 1.3E-16 4.5E-21 113.1 8.8 101 20-124 13-134 (158)
109 1ouv_A Conserved hypothetical 99.7 2.9E-15 1E-19 115.3 17.1 156 5-179 2-173 (273)
110 3nf1_A KLC 1, kinesin light ch 99.7 3E-16 1E-20 121.9 10.9 177 4-181 22-220 (311)
111 3ulq_A Response regulator aspa 99.7 9.5E-16 3.3E-20 123.7 14.1 161 12-180 106-288 (383)
112 4g1t_A Interferon-induced prot 99.7 2.2E-15 7.7E-20 124.2 15.7 175 2-180 165-358 (472)
113 2e2e_A Formate-dependent nitri 99.7 2.7E-16 9.3E-21 113.6 8.9 127 18-156 19-149 (177)
114 2fbn_A 70 kDa peptidylprolyl i 99.7 2.1E-16 7.3E-21 116.4 8.2 155 10-176 5-176 (198)
115 4a1s_A PINS, partner of inscut 99.7 2.1E-15 7.1E-20 122.1 14.6 172 6-179 45-246 (411)
116 3upv_A Heat shock protein STI1 99.7 1.8E-15 6.1E-20 103.3 12.0 113 46-166 3-122 (126)
117 3dra_A Protein farnesyltransfe 99.7 3.4E-15 1.2E-19 117.6 14.9 173 1-179 59-243 (306)
118 1ouv_A Conserved hypothetical 99.6 1.3E-14 4.3E-19 111.7 17.2 155 6-179 35-209 (273)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.6 8.4E-15 2.9E-19 108.4 15.5 105 8-116 36-156 (213)
120 4gcn_A Protein STI-1; structur 99.6 3.2E-15 1.1E-19 102.8 11.9 105 46-151 7-111 (127)
121 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.5E-16 5.3E-21 132.0 6.1 148 22-181 247-410 (457)
122 2fo7_A Synthetic consensus TPR 99.6 3.7E-15 1.3E-19 101.3 11.9 108 3-114 29-136 (136)
123 3ulq_A Response regulator aspa 99.6 3.7E-15 1.3E-19 120.2 13.7 169 5-179 180-362 (383)
124 3ro2_A PINS homolog, G-protein 99.6 7.7E-15 2.6E-19 114.5 15.1 172 6-179 2-206 (338)
125 1dce_A Protein (RAB geranylger 99.6 6.3E-15 2.2E-19 125.3 15.3 162 1-174 55-244 (567)
126 3rjv_A Putative SEL1 repeat pr 99.6 3.9E-15 1.3E-19 111.2 12.3 160 5-181 14-193 (212)
127 3sf4_A G-protein-signaling mod 99.6 5.8E-15 2E-19 118.7 14.1 172 6-179 6-210 (406)
128 3q15_A PSP28, response regulat 99.6 1.2E-14 4E-19 117.3 14.2 174 6-184 179-364 (378)
129 1hxi_A PEX5, peroxisome target 99.6 2.5E-14 8.6E-19 97.5 13.7 99 48-154 18-117 (121)
130 3dra_A Protein farnesyltransfe 99.6 4.1E-15 1.4E-19 117.2 10.6 167 2-179 96-281 (306)
131 2l6j_A TPR repeat-containing p 99.6 8E-16 2.7E-20 102.2 5.4 96 8-107 3-104 (111)
132 3sz7_A HSC70 cochaperone (SGT) 99.6 1.8E-14 6.1E-19 102.9 12.7 106 46-159 10-116 (164)
133 1a17_A Serine/threonine protei 99.6 6.3E-14 2.2E-18 99.2 15.2 128 46-181 12-142 (166)
134 2vyi_A SGTA protein; chaperone 99.6 5.9E-14 2E-18 95.0 14.5 120 46-173 11-131 (131)
135 2lni_A Stress-induced-phosphop 99.6 2.3E-14 7.9E-19 97.7 12.1 118 46-171 15-133 (133)
136 2ooe_A Cleavage stimulation fa 99.6 1.6E-14 5.4E-19 121.6 13.2 166 2-179 265-448 (530)
137 3dss_A Geranylgeranyl transfer 99.6 1.4E-13 4.8E-18 109.2 17.8 157 1-161 56-232 (331)
138 2qfc_A PLCR protein; TPR, HTH, 99.6 1.9E-13 6.7E-18 106.5 18.4 165 5-178 71-258 (293)
139 3sf4_A G-protein-signaling mod 99.6 6.3E-15 2.1E-19 118.5 10.1 166 5-179 83-290 (406)
140 3q15_A PSP28, response regulat 99.6 6.1E-14 2.1E-18 113.0 15.9 161 11-179 103-284 (378)
141 3edt_B KLC 2, kinesin light ch 99.6 1.8E-14 6.3E-19 110.0 11.9 107 4-110 80-198 (283)
142 4a1s_A PINS, partner of inscut 99.6 6.4E-15 2.2E-19 119.3 8.9 166 5-179 122-326 (411)
143 3q49_B STIP1 homology and U bo 99.6 3.3E-14 1.1E-18 97.9 10.8 98 46-151 8-105 (137)
144 2kat_A Uncharacterized protein 99.6 1.2E-13 4.2E-18 92.7 13.2 100 27-130 3-104 (115)
145 3rkv_A Putative peptidylprolyl 99.6 1.7E-14 5.7E-19 102.8 9.3 119 46-172 10-148 (162)
146 2ooe_A Cleavage stimulation fa 99.6 1.1E-13 3.8E-18 116.4 15.5 164 4-179 316-486 (530)
147 2hr2_A Hypothetical protein; a 99.5 1.5E-14 5.1E-19 102.7 8.0 103 46-156 10-136 (159)
148 1na3_A Designed protein CTPR2; 99.5 1.3E-13 4.6E-18 88.0 11.6 84 7-94 7-90 (91)
149 3ro2_A PINS homolog, G-protein 99.5 2.3E-14 8E-19 111.7 9.2 170 9-179 43-246 (338)
150 1elw_A TPR1-domain of HOP; HOP 99.5 4.5E-13 1.5E-17 89.0 14.2 112 46-165 3-115 (118)
151 3dss_A Geranylgeranyl transfer 99.5 5.3E-13 1.8E-17 105.9 16.8 150 2-155 101-271 (331)
152 1na0_A Designed protein CTPR3; 99.5 5.7E-13 1.9E-17 89.3 14.0 117 46-170 8-125 (125)
153 2ifu_A Gamma-SNAP; membrane fu 99.5 7.4E-14 2.5E-18 109.8 10.7 163 9-181 36-220 (307)
154 3q7a_A Farnesyltransferase alp 99.5 1.9E-13 6.3E-18 109.1 12.0 167 1-172 80-258 (349)
155 3ro3_A PINS homolog, G-protein 99.5 3.9E-13 1.3E-17 94.0 11.9 130 5-135 5-149 (164)
156 3u3w_A Transcriptional activat 99.5 4.1E-12 1.4E-16 99.0 18.5 172 7-193 73-268 (293)
157 2c2l_A CHIP, carboxy terminus 99.5 9.2E-14 3.2E-18 108.1 8.8 136 2-151 31-198 (281)
158 2kc7_A BFR218_protein; tetratr 99.5 9.4E-14 3.2E-18 90.6 7.2 93 12-116 3-96 (99)
159 2kck_A TPR repeat; tetratricop 99.5 1E-13 3.4E-18 91.5 7.4 98 46-151 5-105 (112)
160 1wao_1 Serine/threonine protei 99.5 3E-14 1E-18 118.9 5.7 109 2-114 33-154 (477)
161 3gw4_A Uncharacterized protein 99.5 2.7E-13 9.2E-18 99.1 10.1 129 7-135 24-167 (203)
162 2dba_A Smooth muscle cell asso 99.5 8.2E-13 2.8E-17 91.6 12.0 113 46-166 27-143 (148)
163 1na3_A Designed protein CTPR2; 99.5 9.5E-13 3.3E-17 84.0 11.3 83 46-128 8-90 (91)
164 2l6j_A TPR repeat-containing p 99.5 1.4E-12 4.8E-17 86.2 12.3 84 46-129 3-92 (111)
165 2xev_A YBGF; tetratricopeptide 99.5 1.5E-12 5E-17 88.6 12.6 106 49-162 4-116 (129)
166 3k9i_A BH0479 protein; putativ 99.5 2.8E-13 9.5E-18 91.4 8.6 80 5-88 23-102 (117)
167 2ifu_A Gamma-SNAP; membrane fu 99.5 3.6E-13 1.2E-17 105.9 10.4 135 7-151 74-223 (307)
168 1elr_A TPR2A-domain of HOP; HO 99.5 7E-13 2.4E-17 89.7 10.4 118 46-171 3-127 (131)
169 1dce_A Protein (RAB geranylger 99.4 6.3E-13 2.1E-17 113.1 11.8 124 2-129 100-240 (567)
170 3rjv_A Putative SEL1 repeat pr 99.4 9.9E-13 3.4E-17 98.0 11.2 131 5-151 46-196 (212)
171 3gw4_A Uncharacterized protein 99.4 1.8E-12 6.2E-17 94.7 12.4 148 19-179 2-170 (203)
172 2qfc_A PLCR protein; TPR, HTH, 99.4 5.1E-12 1.7E-16 98.4 15.4 125 9-134 115-255 (293)
173 1ihg_A Cyclophilin 40; ppiase 99.4 5.8E-13 2E-17 107.7 9.7 126 46-179 222-364 (370)
174 3q7a_A Farnesyltransferase alp 99.4 1.5E-11 5.2E-16 98.1 17.4 165 3-171 48-216 (349)
175 2if4_A ATFKBP42; FKBP-like, al 99.4 1.4E-13 4.6E-18 110.0 5.5 104 10-117 231-335 (338)
176 1zu2_A Mitochondrial import re 99.4 2.5E-13 8.4E-18 96.3 6.1 77 2-82 29-126 (158)
177 4f3v_A ESX-1 secretion system 99.4 4.9E-14 1.7E-18 109.3 2.5 181 2-193 33-248 (282)
178 3ma5_A Tetratricopeptide repea 99.4 2.1E-12 7.2E-17 84.8 10.1 69 46-114 6-74 (100)
179 2xm6_A Protein corresponding t 99.4 1.6E-11 5.4E-16 102.3 17.1 157 5-180 35-211 (490)
180 3u3w_A Transcriptional activat 99.4 1.9E-12 6.6E-17 100.9 10.5 123 11-134 117-256 (293)
181 4f3v_A ESX-1 secretion system 99.4 9.8E-12 3.3E-16 96.3 14.1 116 3-122 130-248 (282)
182 3ma5_A Tetratricopeptide repea 99.4 1.8E-12 6.3E-17 85.1 8.5 85 4-92 2-88 (100)
183 3e4b_A ALGK; tetratricopeptide 99.4 1.2E-11 4.2E-16 102.3 13.9 153 8-180 175-346 (452)
184 2xm6_A Protein corresponding t 99.4 4.9E-11 1.7E-15 99.3 17.2 111 7-127 73-195 (490)
185 3n71_A Histone lysine methyltr 99.3 7.3E-11 2.5E-15 98.6 17.7 126 11-136 311-456 (490)
186 2kat_A Uncharacterized protein 99.3 4E-12 1.4E-16 85.2 8.2 90 2-95 12-103 (115)
187 1hz4_A MALT regulatory protein 99.3 2.6E-11 9E-16 97.0 13.6 163 8-179 13-197 (373)
188 2kc7_A BFR218_protein; tetratr 99.3 5.1E-11 1.8E-15 77.3 11.1 70 50-119 3-73 (99)
189 1hz4_A MALT regulatory protein 99.3 3E-10 1E-14 90.8 16.4 162 9-179 53-238 (373)
190 3mv2_B Coatomer subunit epsilo 99.3 5.6E-10 1.9E-14 87.6 17.2 153 6-171 97-270 (310)
191 3ro3_A PINS homolog, G-protein 99.2 6E-11 2.1E-15 82.7 10.4 104 9-113 49-161 (164)
192 1xi4_A Clathrin heavy chain; a 99.2 1.2E-09 4.1E-14 99.5 17.7 132 47-184 1221-1383(1630)
193 3qww_A SET and MYND domain-con 99.2 4.8E-10 1.6E-14 92.3 14.0 108 16-123 305-429 (433)
194 3qwp_A SET and MYND domain-con 99.2 1.4E-09 4.8E-14 89.5 16.4 117 10-126 288-421 (429)
195 3bee_A Putative YFRE protein; 99.2 6.8E-10 2.3E-14 71.9 11.5 72 46-117 5-79 (93)
196 1pc2_A Mitochondria fission pr 99.2 4.3E-10 1.5E-14 78.9 11.2 100 25-128 14-118 (152)
197 3e4b_A ALGK; tetratricopeptide 99.2 4.2E-10 1.4E-14 93.1 13.1 156 6-181 138-312 (452)
198 2v5f_A Prolyl 4-hydroxylase su 99.1 9.5E-10 3.2E-14 72.6 11.6 79 9-88 5-87 (104)
199 2v5f_A Prolyl 4-hydroxylase su 99.1 1.3E-09 4.6E-14 71.9 11.1 81 46-126 4-91 (104)
200 4b4t_Q 26S proteasome regulato 99.1 1.9E-09 6.5E-14 87.6 13.7 169 9-179 4-198 (434)
201 1klx_A Cysteine rich protein B 99.1 1.4E-09 4.8E-14 75.5 10.9 97 15-121 31-135 (138)
202 1b89_A Protein (clathrin heavy 99.1 8.3E-10 2.9E-14 90.4 10.9 155 10-184 123-310 (449)
203 3n71_A Histone lysine methyltr 99.1 7.8E-10 2.7E-14 92.4 10.2 108 4-111 346-465 (490)
204 4b4t_Q 26S proteasome regulato 99.0 6.4E-09 2.2E-13 84.5 12.3 174 7-182 53-242 (434)
205 1xi4_A Clathrin heavy chain; a 99.0 1.9E-08 6.3E-13 91.9 15.4 142 21-184 1088-1249(1630)
206 3mv2_B Coatomer subunit epsilo 99.0 7E-09 2.4E-13 81.4 11.2 140 28-179 85-234 (310)
207 3bee_A Putative YFRE protein; 98.9 3.9E-09 1.3E-13 68.3 8.0 73 5-81 2-77 (93)
208 1klx_A Cysteine rich protein B 98.9 8.3E-09 2.8E-13 71.5 10.1 109 23-151 9-125 (138)
209 3u64_A Protein TP_0956; tetrat 98.9 6E-08 2.1E-12 74.9 13.8 110 3-114 146-273 (301)
210 3ly7_A Transcriptional activat 98.8 9.9E-08 3.4E-12 76.3 13.2 136 8-156 195-344 (372)
211 1pc2_A Mitochondria fission pr 98.8 3.3E-08 1.1E-12 69.3 9.0 83 4-89 27-113 (152)
212 4e6h_A MRNA 3'-END-processing 98.8 2.8E-08 9.7E-13 86.0 10.3 105 2-110 336-463 (679)
213 3ly7_A Transcriptional activat 98.8 3.2E-08 1.1E-12 79.1 8.9 110 1-115 225-344 (372)
214 4e6h_A MRNA 3'-END-processing 98.7 3.8E-07 1.3E-11 79.0 15.7 170 2-179 371-564 (679)
215 1nzn_A CGI-135 protein, fissio 98.7 2.2E-07 7.6E-12 62.9 11.1 102 24-129 16-122 (126)
216 1b89_A Protein (clathrin heavy 98.7 1.2E-07 4.2E-12 77.7 11.5 103 8-133 93-195 (449)
217 3qww_A SET and MYND domain-con 98.6 3E-07 1E-11 75.6 10.8 80 4-83 335-423 (433)
218 3qwp_A SET and MYND domain-con 98.6 2.6E-07 9E-12 75.9 9.5 89 4-92 324-424 (429)
219 3o48_A Mitochondria fission 1 98.3 1.3E-05 4.6E-10 54.4 11.1 86 46-131 39-128 (134)
220 3ffl_A Anaphase-promoting comp 98.3 8.7E-06 3E-10 57.5 10.1 116 9-125 20-165 (167)
221 2uy1_A Cleavage stimulation fa 98.3 5.1E-05 1.7E-09 63.4 16.1 163 3-179 207-407 (493)
222 1nzn_A CGI-135 protein, fissio 98.2 1.3E-05 4.3E-10 54.2 9.8 83 5-89 31-116 (126)
223 1y8m_A FIS1; mitochondria, unk 98.2 6.6E-05 2.2E-09 51.6 12.7 83 46-128 38-124 (144)
224 4h7y_A Dual specificity protei 98.2 5.4E-05 1.8E-09 52.5 11.9 114 4-118 8-131 (161)
225 3u64_A Protein TP_0956; tetrat 98.1 3.4E-06 1.1E-10 65.2 5.6 77 1-80 189-273 (301)
226 3o48_A Mitochondria fission 1 98.0 0.00012 4E-09 49.7 11.0 79 8-89 39-120 (134)
227 1y8m_A FIS1; mitochondria, unk 98.0 0.00019 6.3E-09 49.4 11.3 79 7-88 37-118 (144)
228 4g26_A Pentatricopeptide repea 97.8 0.0036 1.2E-07 52.3 18.2 155 12-179 29-198 (501)
229 2uy1_A Cleavage stimulation fa 97.7 0.0011 3.9E-08 55.2 15.0 136 26-176 196-374 (493)
230 3ffl_A Anaphase-promoting comp 97.6 0.00014 4.9E-09 51.3 6.5 120 46-184 19-150 (167)
231 2ff4_A Probable regulatory pro 97.3 0.0099 3.4E-07 48.0 14.8 100 10-109 116-233 (388)
232 1ya0_A SMG-7 transcript varian 97.3 0.0031 1.1E-07 52.6 11.3 81 48-128 153-233 (497)
233 3kae_A CDC27, possible protein 97.2 0.013 4.4E-07 41.6 12.1 104 6-118 30-151 (242)
234 3now_A UNC-45 protein, SD10334 97.1 0.0011 3.6E-08 58.5 6.9 68 138-205 4-71 (810)
235 4g26_A Pentatricopeptide repea 96.8 0.041 1.4E-06 45.9 14.4 98 8-109 104-203 (501)
236 4gns_B Protein CSD3, chitin bi 96.8 0.0065 2.2E-07 53.1 9.7 61 47-107 337-397 (754)
237 4gns_B Protein CSD3, chitin bi 96.8 0.0051 1.7E-07 53.8 8.5 62 8-73 336-397 (754)
238 3txn_A 26S proteasome regulato 96.7 0.04 1.4E-06 44.5 12.8 98 14-111 104-211 (394)
239 4b4t_R RPN7, 26S proteasome re 96.6 0.024 8.3E-07 46.3 11.3 101 11-112 133-239 (429)
240 1zbp_A Hypothetical protein VP 96.5 0.045 1.5E-06 41.7 11.2 63 17-83 5-67 (273)
241 1zbp_A Hypothetical protein VP 96.5 0.028 9.5E-07 42.8 10.0 71 56-126 6-76 (273)
242 1ya0_A SMG-7 transcript varian 96.2 0.033 1.1E-06 46.4 9.9 79 11-93 154-232 (497)
243 4fhn_B Nucleoporin NUP120; pro 96.2 0.049 1.7E-06 50.0 11.9 172 6-181 839-1045(1139)
244 4h7y_A Dual specificity protei 96.0 0.057 2E-06 37.5 8.7 107 41-159 10-131 (161)
245 3mkq_A Coatomer beta'-subunit; 95.8 0.13 4.3E-06 44.7 12.1 45 58-107 663-707 (814)
246 3kae_A CDC27, possible protein 95.6 0.37 1.3E-05 34.3 13.7 76 6-81 59-148 (242)
247 3mkq_A Coatomer beta'-subunit; 95.6 0.28 9.4E-06 42.6 13.4 26 47-72 681-706 (814)
248 3mkq_B Coatomer subunit alpha; 95.1 0.6 2.1E-05 33.2 13.3 53 47-107 8-60 (177)
249 3txn_A 26S proteasome regulato 94.8 1.2 3.9E-05 36.0 13.8 31 9-39 19-49 (394)
250 4b4t_S RPN3, 26S proteasome re 94.8 0.11 3.9E-06 43.2 8.0 110 5-116 177-305 (523)
251 3mkq_B Coatomer subunit alpha; 94.7 0.27 9.3E-06 35.0 8.8 48 17-73 13-60 (177)
252 2ff4_A Probable regulatory pro 94.4 0.18 6.2E-06 40.5 8.3 62 10-75 172-233 (388)
253 3spa_A Mtrpol, DNA-directed RN 94.1 1.4 4.8E-05 40.1 13.8 97 9-110 127-230 (1134)
254 4b4t_P 26S proteasome regulato 93.5 2.6 8.8E-05 34.4 14.1 103 8-110 136-247 (445)
255 4fhn_B Nucleoporin NUP120; pro 93.2 0.77 2.6E-05 42.2 11.0 112 15-134 818-957 (1139)
256 1qsa_A Protein (soluble lytic 92.5 0.95 3.3E-05 38.8 10.0 89 16-109 259-347 (618)
257 2vkj_A TM1634; membrane protei 89.2 2.7 9.3E-05 26.1 7.2 50 7-57 51-100 (106)
258 1wy6_A Hypothetical protein ST 89.0 4.1 0.00014 27.9 8.5 60 50-109 93-153 (172)
259 4b4t_R RPN7, 26S proteasome re 88.9 2 6.8E-05 34.9 8.4 62 49-110 133-197 (429)
260 4gq2_M Nucleoporin NUP120; bet 88.0 3.5 0.00012 37.1 10.0 98 14-119 815-936 (950)
261 3ax2_A Mitochondrial import re 87.6 1.6 5.6E-05 26.1 5.2 29 13-42 21-49 (73)
262 4gq2_M Nucleoporin NUP120; bet 87.5 11 0.00039 33.9 13.0 52 53-108 816-867 (950)
263 2crb_A Nuclear receptor bindin 85.3 1.8 6.3E-05 27.0 4.7 29 8-36 14-42 (97)
264 2d2s_A Exocyst complex compone 85.2 4.7 0.00016 29.9 7.9 52 153-205 88-142 (235)
265 2w2u_A Hypothetical P60 katani 84.9 1.9 6.4E-05 26.5 4.7 29 9-37 19-47 (83)
266 1qsa_A Protein (soluble lytic 84.3 12 0.0004 32.0 10.9 124 12-136 217-340 (618)
267 2v6y_A AAA family ATPase, P60 83.0 2.5 8.6E-05 25.9 4.7 29 9-37 11-39 (83)
268 2wpv_A GET4, UPF0363 protein Y 82.7 15 0.00051 28.5 11.0 39 142-180 119-158 (312)
269 1om2_A Protein (mitochondrial 82.4 2.9 0.0001 26.3 4.8 28 14-42 25-52 (95)
270 4b4t_S RPN3, 26S proteasome re 81.4 4.7 0.00016 33.7 7.1 71 7-80 229-303 (523)
271 4a5x_A MITD1, MIT domain-conta 81.0 3.4 0.00012 25.5 4.8 30 9-38 16-45 (86)
272 3spa_A Mtrpol, DNA-directed RN 80.7 18 0.00063 33.1 11.0 68 47-114 127-200 (1134)
273 3ax2_A Mitochondrial import re 80.0 6.9 0.00024 23.3 5.7 33 86-118 22-54 (73)
274 3t5x_A PCI domain-containing p 77.7 5.8 0.0002 28.6 6.0 87 7-102 12-100 (203)
275 1wfd_A Hypothetical protein 15 77.7 4.6 0.00016 25.3 4.7 29 9-37 15-43 (93)
276 2v6x_A Vacuolar protein sortin 77.5 4.7 0.00016 24.6 4.7 32 7-38 11-42 (85)
277 2ijq_A Hypothetical protein; s 77.1 16 0.00054 25.4 9.6 30 10-39 33-62 (161)
278 1wy6_A Hypothetical protein ST 76.6 13 0.00046 25.4 6.9 56 17-76 99-154 (172)
279 3t5x_A PCI domain-containing p 75.7 9.2 0.00031 27.6 6.6 53 46-98 13-70 (203)
280 2crb_A Nuclear receptor bindin 75.1 6.1 0.00021 24.7 4.5 29 46-74 14-42 (97)
281 2cpt_A SKD1 protein, vacuolar 73.7 5.6 0.00019 26.1 4.5 12 27-38 17-28 (117)
282 2cfu_A SDSA1; SDS-hydrolase, l 73.7 15 0.00051 31.6 8.3 51 47-97 449-499 (658)
283 2rpa_A Katanin P60 ATPase-cont 73.6 2.8 9.5E-05 25.4 2.7 31 9-39 12-42 (78)
284 3t5v_B Nuclear mRNA export pro 72.3 9.7 0.00033 31.3 6.5 64 51-114 180-254 (455)
285 2llw_A Heat shock protein STI1 71.5 3.5 0.00012 24.4 2.8 32 162-193 31-63 (71)
286 3lpz_A GET4 (YOR164C homolog); 68.4 41 0.0014 26.3 11.9 39 142-180 121-160 (336)
287 2cfu_A SDSA1; SDS-hydrolase, l 67.3 16 0.00055 31.4 7.2 52 82-133 450-501 (658)
288 2cwy_A Hypothetical protein TT 67.0 20 0.00069 22.3 6.5 29 13-42 5-33 (94)
289 3re2_A Predicted protein; meni 65.9 44 0.0015 26.7 8.6 44 66-109 276-324 (472)
290 4b4t_P 26S proteasome regulato 65.7 53 0.0018 26.6 18.2 73 46-118 136-217 (445)
291 2lnm_A Protein TIC 40, chlorop 63.0 5.5 0.00019 22.7 2.4 32 162-193 23-55 (62)
292 1om2_A Protein (mitochondrial 62.5 12 0.0004 23.6 4.0 29 86-114 25-53 (95)
293 3t5v_B Nuclear mRNA export pro 59.5 34 0.0011 28.1 7.4 67 14-80 181-254 (455)
294 3myv_A SUSD superfamily protei 57.5 35 0.0012 27.7 7.2 47 63-109 164-218 (454)
295 3u84_A Menin; MLL, JUND, ledgf 56.5 74 0.0025 25.9 8.5 44 66-109 298-346 (550)
296 3esl_A Checkpoint serine/threo 56.4 53 0.0018 23.6 9.0 66 46-112 79-146 (202)
297 2v6x_A Vacuolar protein sortin 55.2 25 0.00087 21.2 4.7 14 59-72 25-38 (85)
298 3kez_A Putative sugar binding 53.8 40 0.0014 27.4 7.0 47 63-109 170-224 (461)
299 3mcx_A SUSD superfamily protei 53.6 44 0.0015 27.2 7.3 48 63-110 176-231 (477)
300 4gq4_A Menin; tumor suppressor 51.6 97 0.0033 25.2 9.5 60 66-125 283-353 (489)
301 3lew_A SUSD-like carbohydrate 51.3 48 0.0016 27.3 7.2 48 63-110 174-232 (495)
302 2wpv_A GET4, UPF0363 protein Y 51.2 82 0.0028 24.3 13.6 26 80-105 133-158 (312)
303 2br9_A 14-3-3E, 14-3-3 protein 51.2 52 0.0018 24.3 6.6 15 94-108 186-200 (234)
304 3lpz_A GET4 (YOR164C homolog); 48.7 95 0.0032 24.3 11.7 26 79-104 134-159 (336)
305 4a1g_A Mitotic checkpoint seri 48.3 63 0.0021 22.1 6.6 48 64-111 82-131 (152)
306 2e2a_A Protein (enzyme IIA); h 47.8 36 0.0012 21.7 4.6 28 8-35 19-46 (105)
307 2npm_A 14-3-3 domain containin 47.3 85 0.0029 23.6 7.3 15 94-108 211-225 (260)
308 1wcr_A PTS system, N, N'-diace 47.3 37 0.0013 21.6 4.6 27 48-74 19-45 (103)
309 2dl1_A Spartin; SPG20, MIT, st 45.9 59 0.002 21.1 6.5 60 62-129 18-81 (116)
310 3esl_A Checkpoint serine/threo 45.4 83 0.0028 22.6 8.2 71 5-78 76-146 (202)
311 1o9d_A 14-3-3-like protein C; 44.7 73 0.0025 23.9 6.6 13 94-106 191-203 (260)
312 2w2u_A Hypothetical P60 katani 44.4 51 0.0017 19.9 9.2 12 59-70 31-42 (83)
313 3uzd_A 14-3-3 protein gamma; s 44.3 77 0.0026 23.6 6.6 14 94-107 187-200 (248)
314 3iqu_A 14-3-3 protein sigma; s 43.2 72 0.0025 23.6 6.2 13 94-106 189-201 (236)
315 3k1s_A PTS system, cellobiose- 42.9 47 0.0016 21.3 4.6 28 8-35 21-48 (109)
316 3ubw_A 14-3-3E, 14-3-3 protein 42.7 84 0.0029 23.6 6.6 14 94-107 212-225 (261)
317 4ady_A RPN2, 26S proteasome re 40.3 96 0.0033 28.1 7.6 98 8-109 412-518 (963)
318 3l8r_A PTCA, putative PTS syst 39.8 54 0.0019 21.4 4.6 27 48-74 38-64 (120)
319 2oo2_A Hypothetical protein AF 39.7 49 0.0017 20.3 4.1 26 8-33 34-59 (86)
320 2pmr_A Uncharacterized protein 39.2 54 0.0019 20.1 4.3 23 9-31 39-61 (87)
321 2o8p_A 14-3-3 domain containin 38.8 1.1E+02 0.0039 22.4 8.5 54 22-75 138-196 (227)
322 3qnk_A Putative lipoprotein; a 38.6 97 0.0033 25.5 7.1 48 63-110 153-211 (517)
323 2v6y_A AAA family ATPase, P60 38.2 65 0.0022 19.3 9.3 11 94-104 24-34 (83)
324 2xze_A STAM-binding protein; h 37.9 52 0.0018 22.3 4.5 24 50-73 43-66 (146)
325 4a1g_A Mitotic checkpoint seri 37.4 63 0.0021 22.1 4.8 68 5-81 67-135 (152)
326 2pm7_A Protein WEB1, protein t 37.2 1.6E+02 0.0054 23.6 9.5 95 8-107 247-362 (399)
327 3re2_A Predicted protein; meni 36.9 75 0.0026 25.4 5.6 45 28-74 276-323 (472)
328 2ijq_A Hypothetical protein; s 36.6 1E+02 0.0035 21.2 9.5 62 49-110 34-104 (161)
329 3efz_A 14-3-3 protein; 14-3-3, 36.2 1E+02 0.0035 23.2 6.2 48 62-109 174-225 (268)
330 3bqo_A Telomeric repeat-bindin 35.9 41 0.0014 24.2 3.8 37 89-125 125-161 (211)
331 3jq1_A SUSD superfamily protei 35.8 81 0.0028 25.8 6.2 47 63-109 154-208 (481)
332 3hdx_A SUSD homolog, SUSD supe 35.6 97 0.0033 25.2 6.6 29 82-110 198-226 (478)
333 2g0u_A Type III secretion syst 34.6 83 0.0028 19.5 5.6 37 97-133 32-68 (92)
334 2yhe_A SEC-alkyl sulfatase; hy 40.6 8.4 0.00029 33.3 0.0 52 48-99 462-513 (668)
335 2dl1_A Spartin; SPG20, MIT, st 33.1 55 0.0019 21.3 3.7 64 23-107 17-80 (116)
336 2vkj_A TM1634; membrane protei 33.1 88 0.003 19.4 5.2 28 47-74 53-80 (106)
337 2ca5_A MXIH; transport protein 32.9 84 0.0029 19.1 7.0 35 97-131 26-60 (85)
338 3myv_A SUSD superfamily protei 32.7 1.1E+02 0.0039 24.6 6.5 49 26-75 165-218 (454)
339 4ady_A RPN2, 26S proteasome re 32.4 2.9E+02 0.0098 25.1 10.3 61 11-74 457-517 (963)
340 3snx_A SUSD homolog, putative 32.4 1.1E+02 0.0039 24.8 6.5 48 63-110 160-220 (460)
341 3mkr_B Coatomer subunit alpha; 32.1 1.8E+02 0.0061 22.6 12.8 106 7-113 100-230 (320)
342 3mcx_A SUSD superfamily protei 30.6 1.3E+02 0.0045 24.4 6.6 51 25-76 176-231 (477)
343 2rpa_A Katanin P60 ATPase-cont 30.2 90 0.0031 18.6 6.9 25 85-109 16-40 (78)
344 3i5p_A Nucleoporin NUP170; hel 29.9 1.8E+02 0.006 24.3 7.2 58 26-84 45-105 (525)
345 2a9u_A Ubiquitin carboxyl-term 29.7 96 0.0033 20.9 4.7 29 9-37 42-70 (144)
346 3kez_A Putative sugar binding 29.7 1.3E+02 0.0043 24.4 6.3 48 27-75 172-224 (461)
347 3bu8_A Telomeric repeat-bindin 29.5 63 0.0021 23.7 3.9 40 57-96 124-163 (235)
348 1wfd_A Hypothetical protein 15 29.0 1E+02 0.0035 18.9 9.9 11 60-70 28-38 (93)
349 3s6n_M SurviVal motor neuron p 29.0 45 0.0015 16.6 2.1 15 25-39 18-32 (37)
350 4a5x_A MITD1, MIT domain-conta 28.9 99 0.0034 18.7 10.2 16 93-108 28-43 (86)
351 3lew_A SUSD-like carbohydrate 28.8 1.4E+02 0.0048 24.4 6.5 32 46-77 202-233 (495)
352 3bu8_A Telomeric repeat-bindin 28.5 76 0.0026 23.2 4.1 140 10-151 17-189 (235)
353 3ub0_A Non-structural protein 28.1 1.6E+02 0.0055 20.8 7.9 54 97-151 19-80 (199)
354 2yhe_A SEC-alkyl sulfatase; hy 33.6 13 0.00044 32.2 0.0 51 83-133 463-513 (668)
355 2qx5_A Nucleoporin NIC96; mRNA 26.4 3.1E+02 0.011 23.6 9.5 98 12-114 446-570 (661)
356 4gq4_A Menin; tumor suppressor 25.6 1E+02 0.0036 25.0 4.8 45 28-74 283-330 (489)
357 2jpu_A ORF C02003 protein; sol 24.8 1.2E+02 0.0042 20.0 4.4 33 7-39 5-37 (129)
358 3now_A UNC-45 protein, SD10334 24.7 2.8E+02 0.0096 24.6 7.9 59 145-204 53-112 (810)
359 3mv2_A Coatomer subunit alpha; 24.4 2.5E+02 0.0085 21.8 14.6 108 7-115 112-241 (325)
360 4abx_A DNA repair protein RECN 23.9 85 0.0029 21.7 3.8 51 63-113 72-122 (175)
361 3i4g_A SUSD-like carbohydrate 23.5 1.8E+02 0.0063 24.0 6.3 47 63-109 167-226 (528)
362 2npu_A FKBP12-rapamycin comple 22.3 1.7E+02 0.0059 19.2 5.2 54 53-109 46-102 (126)
363 3eab_A Spastin; spastin, MIT, 21.7 46 0.0016 20.5 1.7 16 24-39 12-27 (89)
364 2ymb_A MITD1, MIT domain-conta 21.3 20 0.00068 26.9 0.0 27 12-38 26-52 (257)
365 3u84_A Menin; MLL, JUND, ledgf 21.1 1.4E+02 0.005 24.3 4.8 45 28-74 298-345 (550)
366 2cpt_A SKD1 protein, vacuolar 20.6 1.8E+02 0.0061 18.7 10.1 17 93-109 30-46 (117)
367 3qnk_A Putative lipoprotein; a 20.5 2.4E+02 0.0083 23.1 6.5 31 46-76 181-211 (517)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.93 E-value=1.2e-24 Score=150.37 Aligned_cols=119 Identities=25% Similarity=0.367 Sum_probs=115.3
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
.++|+.++.+.++|..+++.|+|++|+.+|+++++++ |+ ++.+++++|.++..+|++++|+..|+++++++|+++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PE---NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 5799999999999999999999999999999999999 98 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
+|+.+|.++..+|++++|+..|+++++++|+++.+...++.+.
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999887763
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=6.6e-24 Score=154.72 Aligned_cols=179 Identities=12% Similarity=0.106 Sum_probs=164.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
+++..++++|.++...|+|++|+..|+++++++ |+ ++.++..+|.++...|++++|+..+.+++..+|+++.++..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 78 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYI 78 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHH
Confidence 467899999999999999999999999999999 99 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN 165 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 165 (206)
+|.++...++++.|...+.+++.++|++..+...++.++...++..+ +...|++++. .|.+...+..+|.+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~~l~~~p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDK--------AIEAYEKTISIKPGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchh--------HHHHHHHHHHhcchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888 5558888888 89999999999999
Q ss_pred hhHhcccchhhHHHHhcchHHHHHHHhcccCChhhhhhhc
Q psy1039 166 LVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLALT 205 (206)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
+..+|++++|.+.+ .++.++-. +++...+|+|
T Consensus 151 ~~~~g~~~~A~~~~------~~al~~~p--~~a~~~lali 182 (184)
T 3vtx_A 151 YEGKGLRDEAVKYF------KKALEKEE--KKAKYELALV 182 (184)
T ss_dssp HHHTTCHHHHHHHH------HHHHHTTH--HHHHHCSCCS
T ss_pred HHHCCCHHHHHHHH------HHHHhCCc--cCHHHHHHhh
Confidence 99999999999999 66666544 4566666665
No 3
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=2.5e-24 Score=161.86 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 85 (206)
|+++..++.+|..++..|++++|+..|+++++.+ |+ ++.+++++|.++...|++++|+..|+++++++|+++.+++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQ---DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 4555666666666666666666666666666666 66 5666666666666666666666666666666666666666
Q ss_pred HHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Q psy1039 86 RRCQAYEAI-----------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS 153 (206)
Q Consensus 86 ~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (206)
.+|.++... |++++|+..|+++++++|+++.++..++.++...++..+ +...|++++. .
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~al~~~- 148 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK--------AEASLKQALALE- 148 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHC-
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH--------HHHHHHHHHhcc-
Confidence 666666666 666666666666666666666666666666666666555 3335555555 4
Q ss_pred CChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 154 APMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.+...+..++.++...|++++|...+
T Consensus 149 ~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55556666666666666666655555
No 4
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=8.6e-24 Score=158.95 Aligned_cols=166 Identities=14% Similarity=0.165 Sum_probs=148.7
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc-----------cCHHHHHHH
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-----------NQNDKVIED 69 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~ 69 (206)
++..+|+++.+++.+|.++...|++++|+..|+++++++ |+ +..++.++|.++... |++++|+..
T Consensus 31 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~ 106 (217)
T 2pl2_A 31 ALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PR---YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV 106 (217)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence 367899999999999999999999999999999999999 99 899999999999999 999999999
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1039 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV 149 (206)
Q Consensus 70 ~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (206)
|+++++++|+++.+++.+|.++..+|++++|+..|+++++++ +++.++..++.++...++..+ +...|+++
T Consensus 107 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~--------A~~~~~~a 177 (217)
T 2pl2_A 107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDE--------ALAQYAKA 177 (217)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH--------HHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH--------HHHHHHHH
Confidence 999999999999999999999999999999999999999999 999999999999999998888 55599999
Q ss_pred cC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 150 FD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 150 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+. .|.+......++.++...|++++|...+
T Consensus 178 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 178 LEQAPKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHSTTCHHHHHHHHHHHTC-----------
T ss_pred HHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 88 8999999999999999999999999887
No 5
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.92 E-value=8.4e-24 Score=184.14 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=157.6
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
...|+++++++++|.++...|++++|+.+|+++++++ |+ +..++.++|.+|..+|++++|+..|+++++++|++..
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~ 78 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4579999999999999999999999999999999999 99 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (206)
+++++|.++..+|++++|++.|+++++++|++..++..++.++...++..+ +...|++++. .|.....+..
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~e--------Ai~~~~~Al~l~P~~~~a~~~ 150 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE--------AIASYRTALKLKPDFPDAYCN 150 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCChHHHhh
Confidence 999999999999999999999999999999999999999999999998888 5559999998 8999999999
Q ss_pred HHhhhhHhcccchhhHHHH
Q psy1039 162 AVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~ 180 (206)
++.++..+|++++|.+.+-
T Consensus 151 L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHH
Confidence 9999999999999998883
No 6
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.90 E-value=3.3e-22 Score=149.30 Aligned_cols=162 Identities=14% Similarity=0.171 Sum_probs=141.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHH----------------HHHHHHHccCHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKN----------------RAAVYLKQNQNDKVIEDCS 71 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~ 71 (206)
+++.+...|..++..|++++|+.+|+++++.+ |+ ++.+++. +|.++...|++++|+..|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-ID---RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56788999999999999999999999999999 98 8889999 9999999999999999999
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 72 KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 72 ~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
++++++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++...+...... +...|+++..
T Consensus 79 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~------~~~~~~~~~~ 152 (208)
T 3urz_A 79 ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK------LETDYKKLSS 152 (208)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH------HHHHHC---C
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999987665433321 4557777766
Q ss_pred CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 152 TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
++.........+.++...|++++|...+
T Consensus 153 ~~~~~~a~~~~g~~~~~~~~~~~A~~~~ 180 (208)
T 3urz_A 153 PTKMQYARYRDGLSKLFTTRYEKARNSL 180 (208)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHccCHHHHHHHH
Confidence 4444445667788889999999998887
No 7
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.89 E-value=2.2e-22 Score=143.37 Aligned_cols=111 Identities=12% Similarity=0.056 Sum_probs=108.1
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
++..+|+++.+++.+|..++..|+|++|+.+|++++.++ |+ ++.+|+++|.++..+|+|++|+..|+++++++|++
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 478899999999999999999999999999999999999 99 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 115 (206)
+.+|+++|.++..+|++++|+..|++++++.|+.+
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999865
No 8
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=1.2e-22 Score=165.27 Aligned_cols=163 Identities=7% Similarity=-0.061 Sum_probs=151.0
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHhhhCCCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-NDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~ 80 (206)
+..+|+++.++..+|.++...|++++|+..|++++.++ |+ +..+|+++|.++..+|+ +++|+..|+++++++|++
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-cc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence 57789999999999999999999999999999999999 99 89999999999999997 999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (206)
..+|+++|.++..+|++++|+..|++++.++|++..++..++.++..+++... +..+|++++. .|.+...+
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~e--------Al~~~~~al~l~P~~~~a~ 237 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN--------ELQYVDQLLKEDVRNNSVW 237 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT--------HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHH--------HHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999888777 5558999998 89999999
Q ss_pred HHHHhhhhHh-cccchhh
Q psy1039 160 VTAVNNLVVL-AREMSGA 176 (206)
Q Consensus 160 ~~~~~~~~~~-~~~~~a~ 176 (206)
..++.++..+ |..++|+
T Consensus 238 ~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHHHHHHTTCSCSHHH
T ss_pred HHHHHHHHHhcCcchHHH
Confidence 9999999994 4447764
No 9
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=7.3e-22 Score=148.65 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=139.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
+.++..++..|..++..|+|++|+..|+++++++ | . +...++++|.++...|++++|+..|+++++++|+++.++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 79 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQ---DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAY 79 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCC---CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHH
Confidence 4566899999999999999999999999999999 7 6 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC--
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI-------QPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSA-- 154 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 154 (206)
+.+|.++..+|++++|+..+++++.++|+++.. +..++.++...++..+ +..+|++++. .|.
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------A~~~~~~al~~~p~~~ 151 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK--------AEENYKHATDVTSKKW 151 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH--------HHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999944 6666666666555555 5669999998 688
Q ss_pred ChhhhHHHHhhhhHhccc
Q psy1039 155 PMDKRVTAVNNLVVLARE 172 (206)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~ 172 (206)
....+..++.++...|+.
T Consensus 152 ~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 152 KTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 788999999999999887
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.88 E-value=1.8e-22 Score=164.07 Aligned_cols=172 Identities=8% Similarity=-0.025 Sum_probs=152.8
Q ss_pred CcccchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGD-YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD 79 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 79 (206)
+|..+|++..+|+.+|.++...|+ +++|+.+|++++.++ |+ +..+|+++|.++..+|++++|+..|++++.++|+
T Consensus 123 al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~---~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~ 198 (382)
T 2h6f_A 123 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PK---NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK 198 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 357899999999999999999997 999999999999999 99 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC-CCCChh
Q psy1039 80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR-MQENEQLQNKVHNMFKYVFD-TSAPMD 157 (206)
Q Consensus 80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (206)
+..+|+++|.++..+|++++|+.+|++++.++|++..++..++.++..++.. ..+. ......+|++++. .|.+..
T Consensus 199 ~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~---~~~el~~~~~Al~l~P~~~~ 275 (382)
T 2h6f_A 199 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV---LEREVQYTLEMIKLVPHNES 275 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH---HHHHHHHHHHHHHHSTTCHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH---HHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999999999999999999999999998874433 2221 0112468888888 899999
Q ss_pred hhHHHHhhhhHhc--ccchhhHHH
Q psy1039 158 KRVTAVNNLVVLA--REMSGAEML 179 (206)
Q Consensus 158 ~~~~~~~~~~~~~--~~~~a~~~~ 179 (206)
.+..++.++...| ++++|++.+
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred HHHHHHHHHHccCccchHHHHHHH
Confidence 9999999999887 467776655
No 11
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.88 E-value=4.2e-21 Score=134.79 Aligned_cols=128 Identities=11% Similarity=0.154 Sum_probs=119.5
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
++..+|++...++.+|..++..|+|++|+..|++++..+ |+ ++.+|+.+|.++...|++++|+..|++++.++|++
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HY---DARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 477899999999999999999999999999999999999 98 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 132 (206)
+.+++.+|.++..+|++++|...|++++.++|+++........+...++...
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVT 137 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988777776666555433
No 12
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.88 E-value=3.1e-21 Score=136.77 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=117.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
++..+|++...++.+|..++..|+|++|+..|++++..+ |+ ++.+|+++|.++...|++++|+..|++++.++|++
T Consensus 13 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 367899999999999999999999999999999999999 98 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 130 (206)
+.+++.+|.++..+|++++|+..|+++++++|+++........+...+..
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 138 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887666665555444
No 13
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.88 E-value=2.9e-22 Score=142.31 Aligned_cols=122 Identities=12% Similarity=0.145 Sum_probs=113.5
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+..+|+++..++.+|.+|+..|+|++|+.+|+++++++ |+ ++.+|+++|.++...|++++|+..|+++++++|+++
T Consensus 24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 99 (150)
T 4ga2_A 24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ER---DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK 99 (150)
T ss_dssp SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence 56789999999999999999999999999999999999 99 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTD-AKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
.+++.+|.++...|++++|... ++++++++|+++.+....+.+...
T Consensus 100 ~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 100 DLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 9999999999999999887766 599999999999998887777644
No 14
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.87 E-value=2.3e-22 Score=142.88 Aligned_cols=147 Identities=12% Similarity=0.025 Sum_probs=129.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy1039 14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA 93 (206)
Q Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 93 (206)
.+|..+...|++++|+..+++++... |+ ++..++.+|.+|+..|+|++|+.+|+++++++|+++.+|+.+|.++..
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~-p~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSP-RQ---KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL 77 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSH-HH---HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccC-cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 47888999999999999999999999 88 888999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcc
Q psy1039 94 IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAR 171 (206)
Q Consensus 94 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (206)
+|++++|+..|+++++++|+++.++..++.++...++..++ +..++++++. .|.+.......+..+...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a-------a~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGR-------AKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH-------HHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-------HHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999887765442 3345688887 78888888888888777665
No 15
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.8e-21 Score=130.64 Aligned_cols=118 Identities=22% Similarity=0.310 Sum_probs=112.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 85 (206)
|..+..++.+|..++..|+|++|+..|+++++++ |+ ++.++.++|.++..+|++++|+..|+++++++|+++.+++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 76 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 5678999999999999999999999999999999 98 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC------CCChhHHHHHHHHHHH
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVE------PTNKAIQPVLSRLFAI 127 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 127 (206)
.+|.++..+|++++|+..|++++.++ |+++.+...+..+...
T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 77 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 9998888888777644
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.86 E-value=4e-20 Score=139.36 Aligned_cols=174 Identities=16% Similarity=0.115 Sum_probs=158.8
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+..+|.++..+..+|.++...|++++|+..|+++++.. |+ ...++..+|.++...|++++|+..|+++++++|.++
T Consensus 50 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 125 (243)
T 2q7f_A 50 IEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SS---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG 125 (243)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH
T ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cc---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 45688899999999999999999999999999999999 98 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV 160 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (206)
.+++.+|.++...|++++|...+++++...|+++.+...++.++...++... +..+|++++. .|.+...+.
T Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~ 197 (243)
T 2q7f_A 126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE--------ALSQFAAVTEQDPGHADAFY 197 (243)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH--------HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCcccHHHHH
Confidence 9999999999999999999999999999999999999999999988888777 4457888777 788889999
Q ss_pred HHHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039 161 TAVNNLVVLAREMSGAEMLLKSGVAKQINTLLK 193 (206)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (206)
.++.++...|++++|...+ .++.++..
T Consensus 198 ~la~~~~~~~~~~~A~~~~------~~~~~~~p 224 (243)
T 2q7f_A 198 NAGVTYAYKENREKALEML------DKAIDIQP 224 (243)
T ss_dssp HHHHHHHHTTCTTHHHHHH------HHHHHHCT
T ss_pred HHHHHHHHccCHHHHHHHH------HHHHccCc
Confidence 9999999999999999888 55555444
No 17
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=3.6e-20 Score=142.31 Aligned_cols=168 Identities=15% Similarity=0.192 Sum_probs=143.8
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC--
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-- 80 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-- 80 (206)
..+|.++..++.+|..++..|+|++|+..|+++++.. |+.+....+++.+|.+++.+|++++|+..|++++.++|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 4578889999999999999999999999999999999 9843448999999999999999999999999999998854
Q ss_pred -HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCChhHH-----------------HHHHHHHHHHHHHHHH
Q psy1039 81 -PKALFRRCQAYEA--------IGKFEEAYTDAKHIHRVEPTNKAIQ-----------------PVLSRLFAIVTKRMQE 134 (206)
Q Consensus 81 -~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~ 134 (206)
+.+++.+|.++.. .|++++|+..|++++..+|+++.+. ..++.++...++...
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~- 166 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA- 166 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH-
Confidence 6789999999999 9999999999999999999998777 555777777666666
Q ss_pred HHHHHHHHHHHHHHhcC-CCC---ChhhhHHHHhhhhHh----------cccchhhHHH
Q psy1039 135 NEQLQNKVHNMFKYVFD-TSA---PMDKRVTAVNNLVVL----------AREMSGAEML 179 (206)
Q Consensus 135 ~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~----------~~~~~a~~~~ 179 (206)
+...|++++. .|. .......++.++..+ |++++|...+
T Consensus 167 -------A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 167 -------AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp -------HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 5557877776 454 456788899999977 7777777766
No 18
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.85 E-value=2.5e-20 Score=133.39 Aligned_cols=124 Identities=27% Similarity=0.351 Sum_probs=115.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------cccCcHHHHHHHHHHHHHHHHccCHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKV------------------TAEESHERATCLKNRAAVYLKQNQNDKVI 67 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~~p~~~~~~~~~~~la~~~~~~~~~~~A~ 67 (206)
...+..+...|..++..|+|++|+..|.+++.+ + |. ...++.++|.|+..+|+|++|+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD-RK---NIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH-HT---HHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH-HH---HHHHHHHHHHHHHhcCcHHHHH
Confidence 456889999999999999999999999999999 5 65 7899999999999999999999
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHHHH
Q psy1039 68 EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK-AIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 68 ~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~ 133 (206)
.+|++++.++|+++.+++++|.++..+|++++|+..|++++.++|+++ .+...+..+...+++..+
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 778888888777665544
No 19
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.85 E-value=2.6e-20 Score=150.43 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=90.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 85 (206)
|++...+..+|.++...|++++|+..|.+++.++ |+ +..++.++|.++...|++++|+..|+++++++|+++.+++
T Consensus 200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 275 (388)
T 1w3b_A 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN---HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3334444444444444444444444444444444 43 4445555555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHh
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVN 164 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 164 (206)
.+|.++...|++++|...|++++.++|+++.++..++.++...++..+ +..+|++++. .|........++.
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~~~l~~ 347 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE--------AVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH--------HHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhcCCCcHHHHHHHHH
Confidence 555555555555555555555555555555555555555554444444 4446777776 5677777777777
Q ss_pred hhhHhcccchhhHHH
Q psy1039 165 NLVVLAREMSGAEML 179 (206)
Q Consensus 165 ~~~~~~~~~~a~~~~ 179 (206)
++...|++++|...+
T Consensus 348 ~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 348 VLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHTTTCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 777777777777776
No 20
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.85 E-value=1.4e-20 Score=133.86 Aligned_cols=126 Identities=17% Similarity=0.258 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-------c--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------S--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI- 76 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-------~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l- 76 (206)
..+..+...|+.++..|+|++|+..|+++++++ |+ . +..+.+|.++|.++..+|+|++|+.+|++++++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 357789999999999999999999999999999 87 2 234569999999999999999999999999999
Q ss_pred ------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039 77 ------VPDDPKAL----FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 77 ------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 133 (206)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..+...+.....
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~ 154 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIA 154 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999999988888877666554
No 21
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.85 E-value=4.5e-20 Score=138.83 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=137.1
Q ss_pred cccch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 2 IDNNM-NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 2 l~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
+..+| .+...++.+|.+++..|++++|+.+|+++++.+ |+ +..++..+|.++..+|++++|+..|+++++++|++
T Consensus 34 l~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 34 LKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN 109 (228)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 34566 778899999999999999999999999999999 99 99999999999999999999999999999999999
Q ss_pred H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHH-HH----------------
Q psy1039 81 P-------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKRM-QE---------------- 134 (206)
Q Consensus 81 ~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~-~~---------------- 134 (206)
+ .+++.+|.++...|++++|+..|+++++++|+ ++.++..++.++...+... ..
T Consensus 110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 189 (228)
T 4i17_A 110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEK 189 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 8 67999999999999999999999999999999 9999999999998777651 11
Q ss_pred --HHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039 135 --NEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN 165 (206)
Q Consensus 135 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 165 (206)
.......+..+|++++. .|.+......++.+
T Consensus 190 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 190 AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 00111346677888877 67777666655544
No 22
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.85 E-value=7.2e-20 Score=131.26 Aligned_cols=115 Identities=26% Similarity=0.300 Sum_probs=109.2
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..++.++..++.+|..++..|+|++|+.+|+++++++ |+ +..+++++|.++..+|++++|+.+|+++++++|+++.
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-Cc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 4577899999999999999999999999999999999 98 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 121 (206)
+++.+|.++..+|++++|+..|++++.++|+++.++...
T Consensus 81 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 999999999999999999999999999999999854443
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=4e-20 Score=148.04 Aligned_cols=166 Identities=13% Similarity=0.122 Sum_probs=131.4
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC----
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV---- 77 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~---- 77 (206)
+..+|+++..++.+|.++...|++++|+.+|++++.++ |+ +..++..+|.++...|++++|+..|+++++++
T Consensus 92 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 167 (365)
T 4eqf_A 92 ILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PN---NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYK 167 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccch
Confidence 34567777777777777777777777777777777777 76 56667777777777666666666666655544
Q ss_pred ----------------------------------------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039 78 ----------------------------------------PD--DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115 (206)
Q Consensus 78 ----------------------------------------p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 115 (206)
|. ++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 247 (365)
T 4eqf_A 168 YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY 247 (365)
T ss_dssp CC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 44 778888889999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 116 AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.++..++.++...++..+ +..+|++++. .|.+...+..++.++...|++++|...+
T Consensus 248 ~~~~~l~~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEE--------AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp HHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHH--------HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888887777 4558888887 7888899999999999999999998888
No 24
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=1.7e-20 Score=136.58 Aligned_cols=139 Identities=12% Similarity=0.178 Sum_probs=132.7
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
+|+.+|+++.+++.+|.++...|++++|+..+.+++... |+ ....+..+|.++...++++.|...+.+++.++|.+
T Consensus 31 al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 106 (184)
T 3vtx_A 31 VLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TT---SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY 106 (184)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-ch---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 357799999999999999999999999999999999999 98 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..+++.+|.++..+|++++|+..|+++++++|+++.++..++.++...++..+ +..+|++++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~al~ 169 (184)
T 3vtx_A 107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE--------AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH--------HHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999888 5558888887
No 25
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=1.5e-19 Score=130.24 Aligned_cols=171 Identities=16% Similarity=0.135 Sum_probs=156.7
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
.+.....++.+|..++..|++++|+..|++++... |+ +..++..+|.++...|++++|+..+++++..+|.+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 79 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AF---DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA 79 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44567889999999999999999999999999999 98 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (206)
+.+|.++...|++++|...+++++..+|+++.+...++.++...++..+ +..++++++. .|.+......++
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE--------AIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHH--------HHHHHHHHHhcCccchHHHHHHH
Confidence 9999999999999999999999999999999999999999988888777 4457888777 688889999999
Q ss_pred hhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039 164 NNLVVLAREMSGAEMLLKSGVAKQINTLLK 193 (206)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (206)
.++...|++++|...+ .++.++..
T Consensus 152 ~~~~~~~~~~~A~~~~------~~~~~~~~ 175 (186)
T 3as5_A 152 FSYEQMGRHEEALPHF------KKANELDE 175 (186)
T ss_dssp HHHHHTTCHHHHHHHH------HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH------HHHHHcCC
Confidence 9999999999999988 66666555
No 26
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=2e-20 Score=156.07 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=154.4
Q ss_pred ccchhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDY-ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
...|.++..++.+|..++..|+| ++|+.+|+++++++ |+ +..+|..+|.+|...|++++|+..|+++++++|+ .
T Consensus 96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~ 170 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PE---LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K 170 (474)
T ss_dssp TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H
T ss_pred ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H
Confidence 34678899999999999999999 99999999999999 98 8999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q psy1039 82 KALFRRCQAYEAI---------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV--------TKRMQENEQLQNKVHN 144 (206)
Q Consensus 82 ~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~ 144 (206)
.+++.+|.++..+ |++++|+..|+++++++|++..++..++.++... ++..+ +..
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~--------A~~ 242 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ--------ALS 242 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH--------HHH
Confidence 9999999999999 9999999999999999999999999999999988 77777 555
Q ss_pred HHHHhcC-CC---CChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 145 MFKYVFD-TS---APMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 145 ~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+|++++. .| .+...+..++.++...|++++|...+
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888 78 89999999999999999999998888
No 27
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.85 E-value=1.3e-19 Score=144.80 Aligned_cols=134 Identities=28% Similarity=0.372 Sum_probs=124.4
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc------------HHHHHHHHHHHHHHHHccCHHHHHHH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES------------HERATCLKNRAAVYLKQNQNDKVIED 69 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~------------~~~~~~~~~la~~~~~~~~~~~A~~~ 69 (206)
+..+|+++..++.+|..++..|+|++|+.+|++++.+. |+. +....++.++|.|+..+|++++|+.+
T Consensus 140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 218 (336)
T 1p5q_A 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34578899999999999999999999999999999999 871 11168999999999999999999999
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 70 ~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.++..+++..++..
T Consensus 219 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 219 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988877654
No 28
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=2.8e-19 Score=132.93 Aligned_cols=165 Identities=14% Similarity=0.009 Sum_probs=148.7
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..+|+++..++.+|..++..|++++|+.+|+++++.. |+ ...++..+|.++...|++++|+..|++++.++|.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 77 (225)
T 2vq2_A 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE 77 (225)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-cc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 3578899999999999999999999999999999999 98 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039 83 ALFRRCQAYEAI-GKFEEAYTDAKHIHR--VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK 158 (206)
Q Consensus 83 ~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (206)
+++.+|.++... |++++|...+++++. .+|.+..++..++.++...++..+ +..+|++++. .|.+...
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~~ 149 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL--------AEAYLKRSLAAQPQFPPA 149 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCCchH
Confidence 999999999999 999999999999999 666667888889999888887777 4457888777 6888899
Q ss_pred hHHHHhhhhHhcccchhhHHH
Q psy1039 159 RVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+..++.++...|++++|...+
T Consensus 150 ~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 150 FKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999888777
No 29
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.84 E-value=1.8e-20 Score=156.38 Aligned_cols=170 Identities=15% Similarity=0.109 Sum_probs=159.3
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ---------NQNDKVIEDCSK 72 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~ 72 (206)
++.+|+++.+++.+|.+++..|++++|+.+|+++++++ |+ ..++.++|.++... |++++|+..|++
T Consensus 130 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~ 204 (474)
T 4abn_A 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-KN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-CC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHH
Confidence 56789999999999999999999999999999999999 98 48999999999999 999999999999
Q ss_pred HhhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 73 SLEIVPDDPKALFRRCQAYEAI--------GKFEEAYTDAKHIHRVEP---TNKAIQPVLSRLFAIVTKRMQENEQLQNK 141 (206)
Q Consensus 73 al~l~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 141 (206)
+++++|+++.+|+.+|.++..+ |++++|+..|++++.++| +++.++..++.++...++..+
T Consensus 205 al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~-------- 276 (474)
T 4abn_A 205 AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGE-------- 276 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHH--------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHH--------
Confidence 9999999999999999999999 999999999999999999 999999999999999998888
Q ss_pred HHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039 142 VHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV 184 (206)
Q Consensus 142 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 184 (206)
+...|++++. .|.....+..++.++...|++++|+..+-+-..
T Consensus 277 A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~ 320 (474)
T 4abn_A 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320 (474)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 5558999888 789999999999999999999999987765533
No 30
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.84 E-value=4.8e-20 Score=148.84 Aligned_cols=165 Identities=12% Similarity=0.071 Sum_probs=116.6
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..+|+++..+..+|.++...|++++|+..|+++++++ |+ ...++..+|.++...|++++|+..|++++.++|+++.
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN---FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 3456666666777777777777777777777777766 66 5666777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (206)
+++.+|.++...|++++|+..|++++.++|+++.++..++.++...++..+ +..+|++++. .|.+......
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~~~ 310 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE--------AEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH--------HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhhCcccHHHHHH
Confidence 777777777777777777777777777777777777777777766666665 4446666666 6777777777
Q ss_pred HHhhhhHhcccchhhHHH
Q psy1039 162 AVNNLVVLAREMSGAEML 179 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~ 179 (206)
++.++...|++++|...+
T Consensus 311 l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 777777777777776665
No 31
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.84 E-value=7.1e-20 Score=126.39 Aligned_cols=113 Identities=23% Similarity=0.302 Sum_probs=102.7
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---- 80 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---- 80 (206)
.++.+.++.++|+.+++.|+|++|+.+|+++++++ |+ ++.++.++|.+|..+|+|++|+.+|+++++++|++
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence 46788999999999999999999999999999999 99 89999999999999999999999999999998876
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy1039 81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122 (206)
Q Consensus 81 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 122 (206)
..+++++|.++..+|++++|+..|++++...|+ ++....+.
T Consensus 80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 358999999999999999999999999999885 44444443
No 32
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=4.6e-19 Score=145.21 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=146.9
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
++..+|.++..++.+|..++..|++++|+..|+++++.+ |+ +..+++.+|.++...|++++|+..|+++++++|++
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 93 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 356789999999999999999999999999999999999 98 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRL------------FAIVTKRMQENEQLQNKVHNM 145 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~ 145 (206)
..+++.+|.++..+|++++|...|++++..+|++. .++..+..+ +...++... +..+
T Consensus 94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------A~~~ 165 (450)
T 2y4t_A 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA--------AIAF 165 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH--------HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--------HHHH
Confidence 99999999999999999999999999999999998 777777554 333333333 5668
Q ss_pred HHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 146 FKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
|++++. .|.+......++.++...|++++|...+
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 166 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888887 7888999999999999999999998887
No 33
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.84 E-value=3.2e-19 Score=135.52 Aligned_cols=163 Identities=10% Similarity=0.062 Sum_probs=80.4
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh--hCCCCHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE--IVPDDPK 82 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--l~p~~~~ 82 (206)
+|.++..+..+|..+...|++++|+.+|+++++.. |+ +..++..+|.++...|++++|+..|++++. .+|.+..
T Consensus 67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 142 (252)
T 2ho1_A 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR---NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSR 142 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHH
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHH
Confidence 34444444445555555555555555555555444 44 344444455555555555555555555544 4444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (206)
+++.+|.++...|++++|...+++++..+|.++.+...++.++...++..+ +..++++++. .|........
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--------A~~~~~~~~~~~~~~~~~~~~ 214 (252)
T 2ho1_A 143 VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP--------ARQYYDLFAQGGGQNARSLLL 214 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCcCcHHHHHH
Confidence 555555555555555555555555555555555444444444444444444 2234444444 3444455555
Q ss_pred HHhhhhHhcccchhhHHH
Q psy1039 162 AVNNLVVLAREMSGAEML 179 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~ 179 (206)
.+.++...|++++|...+
T Consensus 215 ~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 215 GIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHH
Confidence 555555555555554444
No 34
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.83 E-value=2.2e-20 Score=162.63 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=126.7
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
||+.+|+++.+++++|.++...|++++|+.+|+++++++ |+ ++.+++++|.++..+|++++|++.|+++++++|++
T Consensus 35 Al~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~---~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 35 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 367799999999999999999999999999999999999 99 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
..+++++|.++..+|++++|+..|+++++++|+++.++..++.++..+++..++..
T Consensus 111 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999888777554
No 35
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.4e-19 Score=142.00 Aligned_cols=166 Identities=8% Similarity=-0.002 Sum_probs=148.5
Q ss_pred cccchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
+..+|+++..++.+|..+...| ++++|+.+|++++..+ |+ ...++..+|.++...|++++|+..|++++.+.|++
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 158 (330)
T 3hym_B 83 VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC 158 (330)
T ss_dssp HHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC
T ss_pred HHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc
Confidence 4567889999999999999999 9999999999999999 98 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-------
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-T------- 152 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------- 152 (206)
..+++.+|.++...|++++|...+++++..+|+++.++..++.++...++..++.. ++++++. .
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~--------~~~~a~~~~~~~~~~~ 230 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK--------WFLDALEKIKAIGNEV 230 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH--------HHHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999998888777444 4444443 1
Q ss_pred --CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 153 --SAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 153 --~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+........++.++...|++++|...+
T Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 231 TVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp TTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 555678888999999999998888877
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.1e-19 Score=137.86 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=144.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-------
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----HERATCLKNRAAVYLKQNQNDKVIEDCSKSLE------- 75 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~------- 75 (206)
.++..++.+|.++...|++++|+.+|.+++++. |+. +..+.++..+|.++...|++++|+..|++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 114 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADI 114 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHH
Confidence 566788889999999999999999999999888 641 11178899999999999999999999999999
Q ss_pred -------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039 76 -------------------IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 76 -------------------l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
.+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..++.++...++...
T Consensus 115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~--- 191 (258)
T 3uq3_A 115 LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE--- 191 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---
T ss_pred HHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHH---
Confidence 6677788999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 137 QLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+..+|++++. .|.+......++.++...|++++|...+
T Consensus 192 -----A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 192 -----AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp -----HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4558888887 7888999999999999999999998888
No 37
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.82 E-value=5.4e-19 Score=133.21 Aligned_cols=163 Identities=12% Similarity=0.114 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH---HH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK---AL 84 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~ 84 (206)
++..++.+|..++..|+|++|+..|++++... |+.+....+++.+|.+++..|++++|+..|+++++.+|+++. ++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 46789999999999999999999999999998 875556789999999999999999999999999999999864 89
Q ss_pred HHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-----------------HHHHH
Q psy1039 85 FRRCQAYEA------------------IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL-----------------FAIVT 129 (206)
Q Consensus 85 ~~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-----------------~~~~~ 129 (206)
+.+|.++.. .|++++|+..|++++..+|+++.+......+ +...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999886 5799999999999999999998776443332 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCCh---hhhHHHHhhhhHhcccchhhHHH
Q psy1039 130 KRMQENEQLQNKVHNMFKYVFD-TSAPM---DKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+... +...|++++. .|.+. ..+..++.++..+|++++|...+
T Consensus 162 ~~~~--------A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 162 AWVA--------VVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp CHHH--------HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHH--------HHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 2222 5667888887 56554 67889999999999999998877
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.4e-19 Score=140.66 Aligned_cols=167 Identities=10% Similarity=0.001 Sum_probs=155.4
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+..+|+++..+..+|..+...|++++|+..|+++++.. |+ ....+..+|.++...|++++|+..|++++.++|+++
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 193 (330)
T 3hym_B 118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KG---CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193 (330)
T ss_dssp HTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence 56789999999999999999999999999999999999 98 778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVE---------PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD- 151 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (206)
.+++.+|.++...|++++|...+++++... |.++.++..++.++...++..+ +..+|++++.
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--------A~~~~~~a~~~ 265 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE--------ALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHHhh
Confidence 999999999999999999999999999986 6778899999999999888887 5558888888
Q ss_pred CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039 152 TSAPMDKRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
.|.+...+..++.++...|++++|...+-
T Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 266 IPQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp STTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 78899999999999999999999998884
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=4.8e-19 Score=134.54 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=152.3
Q ss_pred cchhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 4 NNMND-YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 4 ~~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
.+|.+ +..++.+|..++..|++++|+.+|++++... |. ...++..+|.++...|++++|+..|++++.++|.+..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 106 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PS---SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR 106 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH
Confidence 46766 8999999999999999999999999999999 98 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHR--VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (206)
+++.+|.++...|++++|...+++++. ..|.+..+...++.++...++..+ +..+|++++. .|.+....
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--------A~~~~~~~~~~~~~~~~~~ 178 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ--------AKEYFEKSLRLNRNQPSVA 178 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhcCcccHHHH
Confidence 999999999999999999999999999 888889999999999988888777 4558888887 78889999
Q ss_pred HHHHhhhhHhcccchhhHHH
Q psy1039 160 VTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~ 179 (206)
..++.++...|++++|...+
T Consensus 179 ~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999988877
No 40
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=8.2e-19 Score=139.98 Aligned_cols=166 Identities=12% Similarity=0.152 Sum_probs=133.6
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC---
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--- 78 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--- 78 (206)
+..+|+++..++.+|.++...|++++|+.+|+++++++ |+ +..++..+|.++...|++++|+..|++++.++|
T Consensus 91 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 91 VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PD---NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp HHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 45577788888888888888888888888888888888 77 677788888888887777777766666555444
Q ss_pred ----------------------------------------------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 79 ----------------------------------------------D--DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 79 ----------------------------------------------~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
. ++.+++.+|.++...|++++|+..|++++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 246 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246 (368)
T ss_dssp GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 5677888888888888888888888888888
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 111 EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 111 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+|+++.++..++.++...++..+ +..+|++++. .|.+......++.++...|++++|...+
T Consensus 247 ~~~~~~~~~~l~~~~~~~g~~~~--------A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 247 RPNDYLLWNKLGATLANGNQSEE--------AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888888888777777 4457888777 7888888899999999999999888887
No 41
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.82 E-value=4.9e-19 Score=122.52 Aligned_cols=124 Identities=24% Similarity=0.296 Sum_probs=112.8
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..+|.++..++.+|..++..|+|++|+.+|.+++..+ |+ +..+++++|.++..+|++++|+..|+++++++|+++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 78 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH
Confidence 4567889999999999999999999999999999999 98 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-----NKAIQPVLSRLFAIVTK 130 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~ 130 (206)
+++.+|.++..+|++++|+..|++++.++|+ +..+...+..+......
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 67777777666554443
No 42
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=5.4e-19 Score=135.69 Aligned_cols=165 Identities=12% Similarity=0.122 Sum_probs=137.8
Q ss_pred cccchhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH--------ccCHHHHHHHH
Q psy1039 2 IDNNMND---YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK--------QNQNDKVIEDC 70 (206)
Q Consensus 2 l~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~ 70 (206)
+..+|++ +.+++.+|.+++..|+|++|+..|+++++.. |+.+....+++.+|.+++. .|++++|+..|
T Consensus 42 l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~ 120 (261)
T 3qky_A 42 FTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAF 120 (261)
T ss_dssp GGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHH
T ss_pred HHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence 4566777 9999999999999999999999999999998 8655578899999999999 99999999999
Q ss_pred HHHhhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHH--
Q psy1039 71 SKSLEIVPDDPKAL-----------------FRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPVLSRLFAIV-- 128 (206)
Q Consensus 71 ~~al~l~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~-- 128 (206)
++++..+|++..+. +.+|.++...|++++|+..|++++...|++ +.++..++.++..+
T Consensus 121 ~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 200 (261)
T 3qky_A 121 QLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE 200 (261)
T ss_dssp HHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999987665 889999999999999999999999999985 56888888888877
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHhcC-CCCC---hhhhHHHHhhhhHhcccchh
Q psy1039 129 --------TKRMQENEQLQNKVHNMFKYVFD-TSAP---MDKRVTAVNNLVVLAREMSG 175 (206)
Q Consensus 129 --------~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~a 175 (206)
++..+ +..+|++++. .|.+ ......+..++...++++++
T Consensus 201 ~~~~~~~~~~~~~--------A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 201 QSVRARQPERYRR--------AVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp TSCGGGHHHHHHH--------HHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchhhcccchHHH--------HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 33344 5668888887 5655 34445566666666666443
No 43
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.82 E-value=4e-19 Score=147.57 Aligned_cols=145 Identities=28% Similarity=0.368 Sum_probs=121.4
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc------------HHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES------------HERATCLKNRAAVYLKQNQNDKVIEDC 70 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~------------~~~~~~~~~la~~~~~~~~~~~A~~~~ 70 (206)
..+|+.+..++.+|..++..|+|++|+..|.+++++. |+. .....++.++|.|+.++|+|++|+.+|
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 340 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECC 340 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4578899999999999999999999999999999999 871 011689999999999999999999999
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1039 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF 150 (206)
Q Consensus 71 ~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
+++++++|++..+++++|.++..+|++++|+..|+++++++|++..++..++.++..+++..++.... ...+|.++.
T Consensus 341 ~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~---~~~~f~k~~ 417 (457)
T 1kt0_A 341 DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI---YANMFKKFA 417 (457)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH---HHHC-----
T ss_pred HHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999988877655422 334444444
Q ss_pred C
Q psy1039 151 D 151 (206)
Q Consensus 151 ~ 151 (206)
.
T Consensus 418 ~ 418 (457)
T 1kt0_A 418 E 418 (457)
T ss_dssp -
T ss_pred h
Confidence 4
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.82 E-value=3.9e-19 Score=136.37 Aligned_cols=168 Identities=8% Similarity=0.042 Sum_probs=142.2
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+..+|+++..++.+|.+++..|++++|+..|+++++.. ++......++..+|.++...|++++|+..|+++++++|.++
T Consensus 30 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 108 (272)
T 3u4t_A 30 EAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL 108 (272)
T ss_dssp HHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence 45678888899999999999999999999999999943 33223356689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS-RLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (206)
.++..+|.++...|++++|+..|++++..+|+++.++..++ .++.. ++..+ +...|++++. .|.+....
T Consensus 109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~--------A~~~~~~a~~~~p~~~~~~ 179 (272)
T 3u4t_A 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVK--------ADSSFVKVLELKPNIYIGY 179 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHHH--------HHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHHH--------HHHHHHHHHHhCccchHHH
Confidence 99999999999999999999999999999999999999998 55543 34444 5568888888 78888888
Q ss_pred HHHHhhhhHhcc---cchhhHHH
Q psy1039 160 VTAVNNLVVLAR---EMSGAEML 179 (206)
Q Consensus 160 ~~~~~~~~~~~~---~~~a~~~~ 179 (206)
...+.++...++ +++|...+
T Consensus 180 ~~~~~~~~~~~~~~~~~~A~~~~ 202 (272)
T 3u4t_A 180 LWRARANAAQDPDTKQGLAKPYY 202 (272)
T ss_dssp HHHHHHHHHHSTTCSSCTTHHHH
T ss_pred HHHHHHHHHcCcchhhHHHHHHH
Confidence 999999999988 77777777
No 45
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=5.5e-19 Score=139.81 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
+++.++.+|..++..|++++|+..|+++++.+ |+ ++.+++.+|.++...|++++|+..|++++.++|+++.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 67899999999999999999999999999999 98 889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC---CChhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEP---TNKAIQPVLS------------RLFAIVTKRMQENEQLQNKVHNMFKYVFD- 151 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (206)
|.++...|++++|...|++++..+| +++.+...++ .++...++... +..++++++.
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------A~~~~~~~~~~ 149 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA--------AITFLDKILEV 149 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH--------HHHHHHHHHHh
Confidence 9999999999999999999999999 8888888874 34444444433 4557777776
Q ss_pred CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 152 TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.|.+.......+.++...|++++|...+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 177 (359)
T 3ieg_A 150 CVWDAELRELRAECFIKEGEPRKAISDL 177 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6777788888888888888887777766
No 46
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=5.3e-19 Score=139.89 Aligned_cols=166 Identities=15% Similarity=0.104 Sum_probs=155.1
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC---
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--- 78 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--- 78 (206)
+..+|+++..++.+|.+++..|++++|+..|+++++.+ |+ +..++..+|.++...|++++|+..|++++.++|
T Consensus 30 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 105 (359)
T 3ieg_A 30 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHH
T ss_pred HhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCccc
Confidence 45689999999999999999999999999999999999 98 789999999999999999999999999999999
Q ss_pred CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 79 DDPKALFRR------------CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF 146 (206)
Q Consensus 79 ~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (206)
+++.++..+ |.++...|++++|+..+++++..+|+++.+...++.++...++... +...+
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------A~~~~ 177 (359)
T 3ieg_A 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRK--------AISDL 177 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHH--------HHHHH
Confidence 898888877 7999999999999999999999999999999999999999988887 55588
Q ss_pred HHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 147 KYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 147 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
++++. .|.+...+..++.++...|++++|...+
T Consensus 178 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp HHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888 7889999999999999999999888876
No 47
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=4.6e-19 Score=141.82 Aligned_cols=161 Identities=18% Similarity=0.202 Sum_probs=128.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
.+...++.+|..++..|++++|+.+|++++..+ |+ +..++..+|.++...|++++|+..|++++.++|++..+++.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 138 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PG---DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMA 138 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 345569999999999999999999999999999 98 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChh----------------------------------------------HHHH
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKA----------------------------------------------IQPV 120 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~----------------------------------------------~~~~ 120 (206)
+|.++...|++++|+..|++++.++|++.. ++..
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 999999999999999999999888776444 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 121 LSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
++.++...++..+ +..+|++++. .|.+...+..++.++...|++++|...+
T Consensus 219 l~~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 219 LGVLFHLSGEFNR--------AIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp HHHHHHHHTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444333 3335555555 4555666666666666666666665555
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=1.4e-18 Score=129.02 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=149.1
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHhh--hCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-NQNDKVIEDCSKSLE--IVP 78 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~--l~p 78 (206)
+..+|+++..+..+|.++...|++++|+.+|++++... |+ +...+..+|.++... |++++|+..|++++. .+|
T Consensus 35 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (225)
T 2vq2_A 35 LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PD---SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP 110 (225)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS
T ss_pred HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC---ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc
Confidence 45678889999999999999999999999999999999 98 788999999999999 999999999999999 677
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-CCh
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS-APM 156 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 156 (206)
.+..+++.+|.++...|++++|...+++++..+|+++.+...++.++...++..+ +..++++++. .| .+.
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~ 182 (225)
T 2vq2_A 111 TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD--------ADYYFKKYQSRVEVLQA 182 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH--------HHHHHHHHHHHHCSCCH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCCCH
Confidence 7789999999999999999999999999999999999999999999999888877 4447777777 56 777
Q ss_pred hhhHHHHhhhhHhcccchhhHHH
Q psy1039 157 DKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
......+.++...|+.+++...+
T Consensus 183 ~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 183 DDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHH
Confidence 77888888888888887776655
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=2.9e-19 Score=134.57 Aligned_cols=161 Identities=16% Similarity=0.113 Sum_probs=132.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
-.+..++.+|..++..|++++|+.+|++++... |+ +..++..+|.++...|++++|+..|++++.++|.+..+++.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 96 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KE---DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHH
Confidence 356789999999999999999999999999999 98 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN 165 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 165 (206)
+|.++...|++++|...+++++..+|+++.+...++.++...++..+ +..++++++. .|.+.......+.+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL--------ALPYLQRAVELNENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH--------HHHHHHHHHHhCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888877 4558888887 78889999999999
Q ss_pred hhHhcccchhhHHH
Q psy1039 166 LVVLAREMSGAEML 179 (206)
Q Consensus 166 ~~~~~~~~~a~~~~ 179 (206)
+...|++++|...+
T Consensus 169 ~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 169 LANEGMLDEALSQF 182 (243)
T ss_dssp HHHHTCCHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 99999999998887
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=5e-18 Score=130.07 Aligned_cols=170 Identities=15% Similarity=0.054 Sum_probs=139.4
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
+|.++..++.+|..++..|++++|+.+|++++..+ |+ +..++..+|.++...|++++|+..|++++.++|.++.++
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 114 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 114 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHH
Confidence 57899999999999999999999999999999999 98 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQN------------------------ 140 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------ 140 (206)
+.+|.++...|++++|...|++++.++|+++.....+... ...++...+...+..
T Consensus 115 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T 1xnf_A 115 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 193 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999999998666555443 333444443322211
Q ss_pred -HHHHHHHHhcCC-C----CChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 141 -KVHNMFKYVFDT-S----APMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 141 -~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.+...+++++.. + ........++.++...|++++|...+
T Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 123444454441 2 12466778888888888888888877
No 51
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=8.1e-20 Score=158.62 Aligned_cols=156 Identities=13% Similarity=0.022 Sum_probs=145.0
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..+|+++..++.+|..++..|++++|+..|+++++.+ |+ +..+++++|.++..+|++++|+..|+++++++|+++.
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 502 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GW---RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA 502 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 5679999999999999999999999999999999999 99 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (206)
+++++|.++..+|++++ +..|+++++++|++..++..++.++...++..+ +...|++++. .|.....+..
T Consensus 503 ~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~--------A~~~~~~al~l~P~~~~a~~~ 573 (681)
T 2pzi_A 503 PKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVG--------AVRTLDEVPPTSRHFTTARLT 573 (681)
T ss_dssp HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHTSCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH--------HHHHHHhhcccCcccHHHHHH
Confidence 99999999999999999 999999999999999999999999999998888 5569999998 7888999999
Q ss_pred HHhhhhHhcc
Q psy1039 162 AVNNLVVLAR 171 (206)
Q Consensus 162 ~~~~~~~~~~ 171 (206)
.+.+++..++
T Consensus 574 ~~~~~~~~~~ 583 (681)
T 2pzi_A 574 SAVTLLSGRS 583 (681)
T ss_dssp HHHHTC----
T ss_pred HHHHHHccCC
Confidence 9999987554
No 52
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.81 E-value=5e-19 Score=122.01 Aligned_cols=121 Identities=12% Similarity=0.161 Sum_probs=110.9
Q ss_pred HHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 34 KALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 34 ~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
++..++ |+ .+..+.++|..+++.|+|++|+..|+++++++|.++.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 4 r~a~in-P~---~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 4 RLAYIN-PE---LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp ---CCC-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHC-HH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 445678 88 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhh
Q psy1039 114 NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL 166 (206)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 166 (206)
++.++..++.++..+++..+ +...|++++. .|.+...+..+++++
T Consensus 80 ~~~a~~~lg~~~~~~~~~~~--------A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 80 FIKGYIRKAACLVAMREWSK--------AQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999888 5559999998 899998888887764
No 53
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=8.1e-19 Score=133.01 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=144.5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-----
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----- 80 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----- 80 (206)
+..++.++.+|..++..|++++|+.+|+++++.+ ++ ..++..+|.++...|++++|+..|++++.++|.+
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 5788999999999999999999999999999998 54 7899999999999999999999999999999877
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChhHHHHHHHHHHHHHHHH
Q psy1039 81 --PKALFRRCQAYEAIGKFEEAYTDAKHIHR--------------------------VEPTNKAIQPVLSRLFAIVTKRM 132 (206)
Q Consensus 81 --~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~~~~~ 132 (206)
+.+++.+|.++...|++++|...|++++. .+|.++.++..++.++...++..
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 79999999999999999999999999999 55666677777777777777666
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 133 QENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
. +..+|++++. .|.+......++.++...|++++|...+
T Consensus 157 ~--------A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 157 N--------AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp H--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred H--------HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6 5558888888 7888999999999999999999998888
No 54
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.80 E-value=3.7e-18 Score=116.17 Aligned_cols=124 Identities=27% Similarity=0.387 Sum_probs=117.2
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..+|.++..++.+|..++..|++++|+..|++++... |+ +..++..+|.++...|++++|+..+++++.++|+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 81 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK 81 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH
Confidence 4678999999999999999999999999999999999 98 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 130 (206)
+++.+|.++...|++++|...+++++..+|+++.+...++.++..+++
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888776543
No 55
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=2.7e-18 Score=136.99 Aligned_cols=158 Identities=14% Similarity=0.158 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la 88 (206)
...++.+|..++..|++++|+.+|+++++.+ |+ +..++..+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 139 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA 139 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4678999999999999999999999999999 98 8899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP----------------VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD- 151 (206)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (206)
.++...|++++|...+++++..+|++..... .++.++ ..++..+ +..+|++++.
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------A~~~~~~a~~~ 210 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLE--------VKELFLAAVRL 210 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHH--------HHHHHHHHHHh
Confidence 9999999999999999999999999887765 344444 5555554 4446666666
Q ss_pred CCC--ChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 152 TSA--PMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 152 ~~~--~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.|. +......++.++...|++++|...+
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555 6677777888888888887777766
No 56
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.80 E-value=3.5e-18 Score=126.09 Aligned_cols=131 Identities=24% Similarity=0.312 Sum_probs=118.5
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcH-------------HHHHHHHHHHHHHHHccCHHHHHHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH-------------ERATCLKNRAAVYLKQNQNDKVIEDC 70 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~-------------~~~~~~~~la~~~~~~~~~~~A~~~~ 70 (206)
..+..+..+..+|..++..|+|++|+.+|.+++.+. |+.+ ....++.++|.++..+|++++|+.+|
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 346678899999999999999999999999999998 7621 01388999999999999999999999
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH
Q psy1039 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN 135 (206)
Q Consensus 71 ~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 135 (206)
++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.+...++.+...+++..+..
T Consensus 112 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 112 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888776644
No 57
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.7e-18 Score=117.77 Aligned_cols=122 Identities=36% Similarity=0.519 Sum_probs=113.4
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..+|.++..++.+|..++..|+|++|+.+|+++++.. |+......++.++|.++...|++++|+..|++++.++|+++.
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 4567889999999999999999999999999999999 982223899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
+++.+|.++..+|++++|...|++++.++|+++.+...+..+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888777664
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=2.1e-18 Score=132.28 Aligned_cols=159 Identities=9% Similarity=0.014 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----HHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKA 83 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~~ 83 (206)
+++.++..|..++..|++++|+..|+++++.+ |+ +..++..+|.++...|++++|+..|++++. .|.+ ..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~ 76 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YN---SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSAD 76 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHH
Confidence 45678999999999999999999999999999 98 788999999999999999999999999999 4444 455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA 162 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 162 (206)
++.+|.++...|++++|+..|++++..+|+++.++..++.++...++... +..+|++++. .|.+...+..+
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~--------A~~~~~~al~~~~~~~~~~~~l 148 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPL--------AIQYMEKQIRPTTTDPKVFYEL 148 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHH--------HHHHHGGGCCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHH--------HHHHHHHHhhcCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888 5559999999 78899999999
Q ss_pred HhhhhHhcccchhhHHH
Q psy1039 163 VNNLVVLAREMSGAEML 179 (206)
Q Consensus 163 ~~~~~~~~~~~~a~~~~ 179 (206)
+......+++++|...+
T Consensus 149 ~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 149 GQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 94444455888888776
No 59
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.79 E-value=2e-18 Score=118.25 Aligned_cols=122 Identities=25% Similarity=0.364 Sum_probs=115.7
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
...|.+..+++.+|..++..|++++|+.+|+++++.. |+ +..++..+|.++...|++++|+..|++++.++|.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 85 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence 3467889999999999999999999999999999999 98 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 128 (206)
+++.+|.++...|++++|...|++++..+|++..+...++.++...
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888887654
No 60
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=6e-19 Score=153.14 Aligned_cols=163 Identities=11% Similarity=0.016 Sum_probs=150.2
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKAL--------KVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al--------~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
..+|+++..++..| +..|++++|++.|++++ ..+ |+ +..+++.+|.++..+|++++|+..|++++
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al 460 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDF-SE---SVELPLMEVRALLDLGDVAKATRKLDDLA 460 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CC-TT---CSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhccccccccc-cc---chhHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 35677777877777 88999999999999999 888 88 88999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Q psy1039 75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS 153 (206)
Q Consensus 75 ~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (206)
+++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++..+ .. +|++++. .|
T Consensus 461 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~--------~~~~al~~~P 531 (681)
T 2pzi_A 461 ERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HK--------FYQTVWSTND 531 (681)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TC--------HHHHHHHHCT
T ss_pred ccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HH--------HHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998887766 55 8888888 79
Q ss_pred CChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039 154 APMDKRVTAVNNLVVLAREMSGAEMLLK 181 (206)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 181 (206)
.+...+..++.++..+|++++|...+-+
T Consensus 532 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 532 GVISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999999999999999988864
No 61
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.79 E-value=3.7e-19 Score=126.57 Aligned_cols=112 Identities=5% Similarity=-0.050 Sum_probs=105.1
Q ss_pred HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 28 A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
+-..+++++.++ |+ +...++.+|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|+|++|+..|+++
T Consensus 21 ~~~~l~~al~l~-p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 21 SGATLKDINAIP-DD---MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp TSCCTGGGCCSC-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHhCCC-HH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 334578888899 98 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 108 HRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 108 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
+.++|+++.++..++.++..+++... +...|++++.
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg~~~e--------A~~~~~~al~ 132 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLKAPLK--------AKECFELVIQ 132 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTTCHHH--------HHHHHHHHHH
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHH--------HHHHHHHHHH
Confidence 99999999999999999999999988 5558888888
No 62
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.79 E-value=1e-18 Score=126.82 Aligned_cols=163 Identities=12% Similarity=0.034 Sum_probs=140.0
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
||...+.++..|..++..|++++|+..|+++++.+ |+ +..+++.+|.++...|++++|+..|++++..+| ++..+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~ 76 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QS---RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK 76 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH
Confidence 56666789999999999999999999999999999 99 899999999999999999999999999999999 88776
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC--ChhhhH
Q psy1039 85 FRRCQAYE-AIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSA--PMDKRV 160 (206)
Q Consensus 85 ~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~ 160 (206)
..++.+.. ..+...+|+..+++++..+|+++.++..++.++...++..+ +...|++++. .|. +...+.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~--------A~~~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 77 SLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEE--------ALELLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHTTCTTTTTTHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH--------HHHHHHHHHHhCcccChHHHHH
Confidence 66665533 33444568999999999999999999999999999998888 5558888888 454 356889
Q ss_pred HHHhhhhHhcccchhhHHHH
Q psy1039 161 TAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~~ 180 (206)
.++.++...|+.++|...+.
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHH
Confidence 99999999999999998883
No 63
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.79 E-value=1.5e-17 Score=111.25 Aligned_cols=115 Identities=30% Similarity=0.443 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
+.+..++.+|..++..|++++|+.+|++++... |+ +..++..+|.++...|++++|+..+++++.++|+++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHH
Confidence 357889999999999999999999999999999 98 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
+|.++...|++++|...+++++..+|+++.+...++.+.
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999988887764
No 64
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.78 E-value=1.9e-18 Score=118.19 Aligned_cols=104 Identities=12% Similarity=0.061 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la 88 (206)
...++.+|..++..|++++|+..|+++++.+ |+ +..+|+.+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la 92 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKE-PE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3468999999999999999999999999999 99 8999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKA 116 (206)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 116 (206)
.++...|++++|+..|+++++++|++..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999998754
No 65
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.78 E-value=3.7e-18 Score=139.79 Aligned_cols=166 Identities=14% Similarity=0.118 Sum_probs=152.8
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+..+|+++..++.+|..++..|++++|+..|+++++.+ |+ +..++..+|.++..+|++++|+..|++++.++|++.
T Consensus 53 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 53 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred HHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 45678999999999999999999999999999999999 98 789999999999999999999999999999999988
Q ss_pred ---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 82 ---KALFRR------------CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF 146 (206)
Q Consensus 82 ---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (206)
.++..+ |.++...|++++|+..|++++..+|+++.+...++.++...++..+ +..+|
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--------A~~~~ 200 (450)
T 2y4t_A 129 EEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRK--------AISDL 200 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGG--------GHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHH--------HHHHH
Confidence 776555 7779999999999999999999999999999999999999888777 44588
Q ss_pred HHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 147 KYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 147 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
++++. .|.+...+..++.++...|++++|...+
T Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88877 6888999999999999999999998887
No 66
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.78 E-value=4.6e-18 Score=144.05 Aligned_cols=171 Identities=7% Similarity=-0.025 Sum_probs=91.3
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
+|++...+..+|..+...|++++|+.+|+++++.. |+ +...|..+|.++...|++++|+..|++++...|++..++
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 444 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQ---FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH
Confidence 34445555555555555555555555555555555 44 444455555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQN------------------------ 140 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------ 140 (206)
..+|.++...|++++|...|++++..+|+++.++..++.++...++..++...+.+
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 55555555555555555555555555555554444444444443333332221111
Q ss_pred ---------HHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 141 ---------KVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 141 ---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.+..+|++++. .|.+...+..++.++...|++++|...+
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 13446666666 5667777777777777777777777776
No 67
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.78 E-value=2.7e-18 Score=143.47 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=117.2
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..+|+++..+..+|.++...|++++|+..|+++++.+ |+ +..++..+|.++...|++++|+..|+++++.+|+++.
T Consensus 304 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 379 (537)
T 3fp2_A 304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PE---NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE 379 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 3456666667777777777777777777777777766 66 5666667777777777777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH------HHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP------VLSRLFAIV----------TKRMQENEQLQNKVHNMF 146 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------~l~~~~~~~----------~~~~~~~~~~~~~~~~~~ 146 (206)
+++.+|.++...|++++|...|++++..+|+++.... .++.++... ++..+ +..+|
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------A~~~~ 451 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA--------AIKLL 451 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH--------HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH--------HHHHH
Confidence 7777777777777777777777777776665544332 223444444 44444 55688
Q ss_pred HHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039 147 KYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 147 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
++++. .|.+...+..++.++...|++++|...+-
T Consensus 452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 88888 78899999999999999999999998883
No 68
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.78 E-value=4.7e-17 Score=115.59 Aligned_cols=126 Identities=25% Similarity=0.408 Sum_probs=114.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 85 (206)
...+..++.+|..++..|++++|+..|.+++... |+ +..++.++|.++...|++++|+..|++++.++|.++.+++
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 85 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELN-PS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 3568899999999999999999999999999999 98 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHHHHHHH
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL--FAIVTKRMQEN 135 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~~ 135 (206)
.+|.++..+|++++|...|++++.++|+++.+...++.+ +...++..++.
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 137 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 137 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888666655 44445555533
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.77 E-value=1.4e-17 Score=119.84 Aligned_cols=139 Identities=16% Similarity=0.214 Sum_probs=128.9
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
++..+|.++..++.+|..+...|++++|+.+++++++.. |+ +..++..+|.++...|++++|+..+++++..+|.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 109 (186)
T 3as5_A 34 VYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PD---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109 (186)
T ss_dssp TCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh
Confidence 356788899999999999999999999999999999999 98 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
+.+++.+|.++...|++++|...+++++...|+++.+...++.++...++..++ ..++++++.
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A--------~~~~~~~~~ 172 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA--------LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH--------HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988887774 446666655
No 70
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=5.9e-18 Score=132.29 Aligned_cols=164 Identities=10% Similarity=-0.010 Sum_probs=151.5
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
-|.+...++.+|..+...|++++|+..|++++..+ |+ +..+++.+|.++...|++++|+..+++++..+|+.....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 188 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG 188 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-Cc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH
Confidence 37788899999999999999999999999999999 99 899999999999999999999999999999999888788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC--hhhhHH
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAP--MDKRVT 161 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~ 161 (206)
...+..+...++.++|+..+++++..+|+++.++..++.++...++..+ +...|.+++. .|.. ...+..
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~--------A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEE--------ALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTGGGGHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHH--------HHHHHHHHHhcccccccchHHHH
Confidence 8888889999999999999999999999999999999999999998888 4558888887 6766 888999
Q ss_pred HHhhhhHhcccchhhHHHH
Q psy1039 162 AVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~ 180 (206)
++.++...|+.++|...+-
T Consensus 261 l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 261 FQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHH
Confidence 9999999999999988874
No 71
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.77 E-value=2.3e-17 Score=128.54 Aligned_cols=106 Identities=26% Similarity=0.377 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 85 (206)
|.++..++.+|..++..|+|++|+..|++++..+ |+ +..++.++|.++..+|++++|+..|+++++++|+++.+++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 76 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5678899999999999999999999999999999 98 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 115 (206)
.+|.++..+|++++|...|++++.++|+++
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 999999999999999999999999999774
No 72
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.77 E-value=9.9e-18 Score=142.31 Aligned_cols=143 Identities=12% Similarity=0.111 Sum_probs=127.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
+++.+|+++..++.+|..+...|++++|+..|+++++++ |+ +..++.++|.++..+|++++|+..|+++++++|++
T Consensus 15 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 90 (568)
T 2vsy_A 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PG---HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90 (568)
T ss_dssp ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 467789999999999999999999999999999999999 98 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcC-CCCC
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV---TKRMQENEQLQNKVHNMFKYVFD-TSAP 155 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 155 (206)
..+++.+|.++..+|++++|...|+++++++|++..+...++.++... ++..+ +...+++++. .|..
T Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~--------A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV--------LSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHH--------HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHH--------HHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999988 77776 4446666666 4443
No 73
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.7e-18 Score=141.60 Aligned_cols=166 Identities=12% Similarity=0.098 Sum_probs=152.3
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+..+|.++..+..+|.++...|++++|+..|++++... |+ +..++..+|.++...|++++|+..|++++..+|+++
T Consensus 297 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 372 (514)
T 2gw1_A 297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PE---NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372 (514)
T ss_dssp HTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SS---CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS
T ss_pred hhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH
Confidence 45678889999999999999999999999999999999 98 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAI---VTKRMQENEQLQNKVHNMFKYVFD- 151 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~- 151 (206)
.+++.+|.++...|++++|...+++++...|+++. ++..++.++.. .++... +..+|++++.
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------A~~~~~~a~~~ 444 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE--------ATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH--------HHHHHHHHHHh
Confidence 99999999999999999999999999999998876 88999999888 888777 4558888887
Q ss_pred CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 152 TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.|.+...+..++.++...|++++|...+
T Consensus 445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 445 DPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7888999999999999999999988877
No 74
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=8.9e-18 Score=131.49 Aligned_cols=161 Identities=11% Similarity=0.055 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
.+...++.+|..++..|++++|+.+|+++++.+ |+ +..++..+|.++...|++++|+..|+++++++|++..+++.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 94 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 94 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 456788999999999999999999999999999 98 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH--------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL--------------SR-LFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
+|.++...|++++|...+++++..+|.+......+ +. ++...++..+ +..++++++.
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------A~~~~~~~~~ 166 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE--------CRTLLHAALE 166 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH--------HHHHHHHHHh
Confidence 99999999999999999999999999998877666 44 3444444444 3345555555
Q ss_pred -CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 152 -TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 152 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.|.+......++.++...|++++|...+
T Consensus 167 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 195 (327)
T 3cv0_A 167 MNPNDAQLHASLGVLYNLSNNYDSAAANL 195 (327)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 5666666667777777777776666655
No 75
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.76 E-value=4.2e-17 Score=109.93 Aligned_cols=119 Identities=28% Similarity=0.449 Sum_probs=110.6
Q ss_pred chhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 5 NMND-YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 5 ~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
+|.. +..++.+|..+...|++++|+.+|.+++... |+ +..++..+|.++...|++++|+..|++++..+|.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 79 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence 4544 7899999999999999999999999999999 98 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
++.+|.++...|++++|...+++++..+|+++.+...++.++..
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999888877654
No 76
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=4.1e-18 Score=133.38 Aligned_cols=166 Identities=10% Similarity=0.084 Sum_probs=138.2
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh-------
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL------- 74 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al------- 74 (206)
+..+|+++..+..+|.++...|++++|+.+|+++++.. |+ +..++..+|.++...|++++|+..|++++
T Consensus 48 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 123 (327)
T 3cv0_A 48 CQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK---DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 123 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence 34577888888888888888888888888888888888 87 67778888888777777766666655544
Q ss_pred ------------------------------------------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1039 75 ------------------------------------------EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112 (206)
Q Consensus 75 ------------------------------------------~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 112 (206)
+.+|.++.+++.+|.++...|++++|...+++++..+|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 203 (327)
T 3cv0_A 124 QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203 (327)
T ss_dssp TC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 45566777888999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 113 TNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+++.++..++.++...++..+ +..+|++++. .|.+...+..++.++...|++++|...+
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~--------A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQE--------ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999988887777 4458888877 7888889999999999999999998887
No 77
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.1e-17 Score=131.67 Aligned_cols=166 Identities=11% Similarity=0.058 Sum_probs=129.6
Q ss_pred cccchhhHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-ccccCcHHHHHHHHHHHHHHHHccCHHHH
Q psy1039 2 IDNNMNDYNKLKESGNSAFK-------QGDY-------ETALDFYTKALK-VTAEESHERATCLKNRAAVYLKQNQNDKV 66 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~-------~g~~-------~~A~~~~~~al~-~~~p~~~~~~~~~~~la~~~~~~~~~~~A 66 (206)
+..+|+++..|+..|..+.. .|++ ++|+..|+++++ +. |+ +..+|..+|..+...|++++|
T Consensus 43 l~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~---~~~~~~~~~~~~~~~~~~~~A 118 (308)
T 2ond_A 43 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KK---NMLLYFAYADYEESRMKYEKV 118 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TT---CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHhcCCHHHH
Confidence 45678889999999988874 4775 889999999998 68 87 788899999999999999999
Q ss_pred HHHHHHHhhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy1039 67 IEDCSKSLEIVPDDPK-ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI-VTKRMQENEQLQNKVHN 144 (206)
Q Consensus 67 ~~~~~~al~l~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~ 144 (206)
...|+++++++|.++. +|..+|.++...|++++|...|+++++.+|.+..++...+.+... .++... +..
T Consensus 119 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~--------A~~ 190 (308)
T 2ond_A 119 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV--------AFK 190 (308)
T ss_dssp HHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH--------HHH
T ss_pred HHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH--------HHH
Confidence 9999999999998886 889999999899999999999999998888876665544433221 233333 445
Q ss_pred HHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 145 MFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 145 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.|++++. .|.+...+...+..+...|+++.|...+
T Consensus 191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 226 (308)
T 2ond_A 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 226 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777766 5777777888888887778777776665
No 78
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.76 E-value=3.8e-17 Score=132.27 Aligned_cols=126 Identities=29% Similarity=0.515 Sum_probs=117.5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------ccccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALK----------------VTAEESHERATCLKNRAAVYLKQNQNDKVIED 69 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~ 69 (206)
...+..+..+|..++..|+|++|+..|+++++ .. |. ...++.++|.+++.+|++++|+.+
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~---~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PV---ALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HH---HHHHHHHHHHHHHhccCHHHHHHH
Confidence 35577899999999999999999999999999 55 65 789999999999999999999999
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH
Q psy1039 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN 135 (206)
Q Consensus 70 ~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 135 (206)
|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.+...++.++..+++..++.
T Consensus 296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998888776644
No 79
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.76 E-value=1.4e-18 Score=138.98 Aligned_cols=137 Identities=30% Similarity=0.446 Sum_probs=97.2
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHH-----------------HHHHHHHHHHHHccCHHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERA-----------------TCLKNRAAVYLKQNQNDKV 66 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~-----------------~~~~~la~~~~~~~~~~~A 66 (206)
..+..+..++.+|..++..|+|++|+.+|.+++.+. |+ +. .++.++|.|+..+|+|++|
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~---~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A 249 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-GD---DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEA 249 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-CH---HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cc---chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 457789999999999999999999999999999999 87 44 4899999999999999999
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF 146 (206)
Q Consensus 67 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (206)
+.+|+++++++|++..+++++|.++..+|++++|+..|++++.++|+++.+...++.+........+ ....+|
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~-------~a~~~~ 322 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ-------KQKEMY 322 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888654443322 134577
Q ss_pred HHhcC
Q psy1039 147 KYVFD 151 (206)
Q Consensus 147 ~~~~~ 151 (206)
++++.
T Consensus 323 ~~~l~ 327 (338)
T 2if4_A 323 KGIFK 327 (338)
T ss_dssp -----
T ss_pred HHhhC
Confidence 77776
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.76 E-value=1.4e-17 Score=124.03 Aligned_cols=140 Identities=16% Similarity=0.122 Sum_probs=116.0
Q ss_pred cccchhhHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHH
Q psy1039 2 IDNNMNDYNKLKE----------------SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65 (206)
Q Consensus 2 l~~~p~~~~~~~~----------------~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~ 65 (206)
+..+|+++.+++. +|.++...|++++|+..|+++++++ |+ +..+++++|.++...|++++
T Consensus 31 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~ 106 (208)
T 3urz_A 31 IALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN---NVDCLEACAEMQVCRGQEKD 106 (208)
T ss_dssp HHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHH
T ss_pred HHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHH
Confidence 5678999999999 9999999999999999999999999 99 89999999999999999999
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGK--FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVH 143 (206)
Q Consensus 66 A~~~~~~al~l~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (206)
|+..|+++++++|+++.+++.+|.++...|+ ...+...+.+++...|. ..+....+......++..+ +.
T Consensus 107 A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~--------A~ 177 (208)
T 3urz_A 107 ALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEK--------AR 177 (208)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHH--------HH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHH--------HH
Confidence 9999999999999999999999999988765 45567777777643332 2345556666666666666 66
Q ss_pred HHHHHhcC-CCC
Q psy1039 144 NMFKYVFD-TSA 154 (206)
Q Consensus 144 ~~~~~~~~-~~~ 154 (206)
.+|++++. .|.
T Consensus 178 ~~~~~al~l~P~ 189 (208)
T 3urz_A 178 NSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHTTTSCC
T ss_pred HHHHHHHHhCCC
Confidence 69999998 453
No 81
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.76 E-value=3.2e-17 Score=112.09 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFR 86 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~ 86 (206)
..++.+|..++..|+|++|+..|++++... |+.+....+++.+|.++...|++++|+..|++++..+|++ +.+++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 457899999999999999999999999999 9844444899999999999999999999999999999999 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 126 (206)
+|.++..+|++++|...|++++...|+++.+......+..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999888776665543
No 82
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.76 E-value=2.5e-17 Score=112.11 Aligned_cols=120 Identities=27% Similarity=0.342 Sum_probs=111.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-----
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----- 80 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----- 80 (206)
|..+..++.+|..++..|++++|+.+|.+++... |+ +..++..+|.++...|++++|+.+|++++.+.|.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELD-PT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 4578899999999999999999999999999999 98 78999999999999999999999999999999877
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039 81 --PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (206)
Q Consensus 81 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 130 (206)
+.+++.+|.++...|++++|...|++++...| ++.....++.+...+++
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999 68888888887766554
No 83
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.76 E-value=1.1e-16 Score=118.57 Aligned_cols=146 Identities=15% Similarity=0.151 Sum_probs=127.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 85 (206)
...+..++.+|..++..|++++|+..|++++ . |+ +.+++++|.++...|++++|+..|++++.++|.++.+++
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 75 (213)
T 1hh8_A 3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--D-PH----SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 3466788999999999999999999999995 4 64 679999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNK----------------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV 149 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (206)
.+|.++..+|++++|+..|++++.+.|++. .++..++.++...++... +..+|+++
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--------A~~~~~~a 147 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK--------AEEQLALA 147 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH--------HHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH--------HHHHHHHH
Confidence 999999999999999999999999999887 899999999999888887 55588888
Q ss_pred cC-CCCChhhhHHHHhhh
Q psy1039 150 FD-TSAPMDKRVTAVNNL 166 (206)
Q Consensus 150 ~~-~~~~~~~~~~~~~~~ 166 (206)
+. .|.........+...
T Consensus 148 l~~~p~~~~~~~~~a~~~ 165 (213)
T 1hh8_A 148 TSMKSEPRHSKIDKAMEC 165 (213)
T ss_dssp HTTCCSGGGGHHHHHHHH
T ss_pred HHcCcccccchHHHHHHH
Confidence 88 565544444433333
No 84
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.75 E-value=3.7e-17 Score=118.20 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=111.3
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH-HHHccCH--HHHHHHHHHHhhhCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAV-YLKQNQN--DKVIEDCSKSLEIVP 78 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~-~~~~~~~--~~A~~~~~~al~l~p 78 (206)
+..+|+++..++.+|.+++..|++++|+.+|++++.++ |+ +..++..+|.+ +...|++ ++|+..|++++.++|
T Consensus 37 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p 112 (177)
T 2e2e_A 37 IRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GE---NAELYAALATVLYYQASQHMTAQTRAMIDKALALDS 112 (177)
T ss_dssp HHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CS---CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC
Confidence 45688999999999999999999999999999999999 98 78999999999 8899999 999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
+++.+++.+|.++...|++++|...|++++.++|+++.....+..+.
T Consensus 113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 113 NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159 (177)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999987665554443
No 85
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=3e-17 Score=137.09 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la 88 (206)
+.++..+|..+...|++++|+..|++++..+ |+ ...+..+|.++...|++++|+..|++++.++|+++.+++.+|
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLH-PT----PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CC----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 4578899999999999999999999999999 97 678999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhh
Q psy1039 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV 167 (206)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 167 (206)
.++...|++++|+..|++++..+|+++.++..++.++...++... +..+|++++. .|.+...+...+.++.
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~--------A~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTE--------SEAFFNETKLKFPTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888888 4558888888 7888999999999999
Q ss_pred HhcccchhhHHH
Q psy1039 168 VLAREMSGAEML 179 (206)
Q Consensus 168 ~~~~~~~a~~~~ 179 (206)
..|++++|...+
T Consensus 390 ~~g~~~~A~~~~ 401 (537)
T 3fp2_A 390 DRGDFDTAIKQY 401 (537)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 999999999988
No 86
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.75 E-value=3.8e-17 Score=138.43 Aligned_cols=173 Identities=14% Similarity=0.078 Sum_probs=151.4
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..+|++...+..++..+...|++++|+..+.+++... |+ +...+..+|.+|...|++++|+..|+++++++|.+..
T Consensus 333 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 408 (597)
T 2xpi_A 333 EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE---KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408 (597)
T ss_dssp HHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence 4568888899999999999999999999999999999 98 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQN---------------------- 140 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------- 140 (206)
+|..+|.++...|++++|++.|++++...|++..++..++.++...++..++...+.+
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998887776665443321
Q ss_pred ----HHHHHHHHhcC-------CCCC-hhhhHHHHhhhhHhcccchhhHHH
Q psy1039 141 ----KVHNMFKYVFD-------TSAP-MDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 141 ----~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.+..+|++++. .|.. ...+..++.++...|++++|...+
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 24566666654 2222 678889999999999999998887
No 87
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=4.9e-17 Score=127.42 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=132.9
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
+|+++..++.+|.++...|++++|+..|++ |+ +..++..+|.++..+|++++|+..|+++++++|++....
T Consensus 97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 167 (291)
T 3mkr_A 97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GD---SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ 167 (291)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CC---SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHH
Confidence 588899999999999999999999998887 33 577889999999999999999999999999999886554
Q ss_pred HHHH--HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039 85 FRRC--QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (206)
Q Consensus 85 ~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (206)
+..| ..+...|++++|...|++++..+|+++.++..++.++...++..+ +...|++++. .|.+...+..
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~e--------A~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEA--------AEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCCHHHHHH
Confidence 4434 233345889999999999999999999999999999999888888 5558888888 8899999999
Q ss_pred HHhhhhHhcccchhhHHH
Q psy1039 162 AVNNLVVLAREMSGAEML 179 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~ 179 (206)
++.++...|+.++++..+
T Consensus 240 l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp HHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 999999999987765444
No 88
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=4.4e-17 Score=128.27 Aligned_cols=174 Identities=8% Similarity=-0.071 Sum_probs=150.4
Q ss_pred cc-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHH-HHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039 2 ID-NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERAT-CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD 79 (206)
Q Consensus 2 l~-~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 79 (206)
+. .+|++...|...|..+...|++++|...|++++++. |. +.. +|.++|.++...|++++|+..|+++++.+|.
T Consensus 91 l~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 166 (308)
T 2ond_A 91 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 166 (308)
T ss_dssp HTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SS---CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cc---CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 45 589999999999999999999999999999999999 97 565 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CC-
Q psy1039 80 DPKALFRRCQAYEA-IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD----TS- 153 (206)
Q Consensus 80 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~- 153 (206)
+..+|...+..... .|++++|...|++++..+|+++.++..++.+....++..+ +..+|++++. +|
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~--------A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN--------TRVLFERVLTSGSLPPE 238 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH--------HHHHHHHHHHSSSSCGG
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHhccCCCHH
Confidence 98888877766443 7999999999999999999999999999999888777766 5568888887 23
Q ss_pred CChhhhHHHHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039 154 APMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLK 193 (206)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (206)
.....+...+..+...|+.+.|...+ .+..+...
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~------~~a~~~~p 272 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVE------KRRFTAFR 272 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHH------HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHcc
Confidence 35678888999999999998888776 45544444
No 89
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.74 E-value=1.2e-17 Score=110.80 Aligned_cols=108 Identities=13% Similarity=0.223 Sum_probs=103.6
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--CH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DP 81 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~ 81 (206)
.+|+++..++.+|..++..|++++|+.+|+++++.. |+ ...++.++|.++...|++++|+..|+++++++|. +.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 76 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence 368888999999999999999999999999999999 98 7889999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCh
Q psy1039 82 KALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPTNK 115 (206)
Q Consensus 82 ~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 115 (206)
.+++.+|.++..+ |++++|.+.+++++...|.++
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999999999 999999999999999999875
No 90
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.74 E-value=1.7e-17 Score=117.40 Aligned_cols=117 Identities=5% Similarity=-0.054 Sum_probs=106.8
Q ss_pred HHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 30 ~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
..|++++.++ |+ +...++.+|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+..|++++.
T Consensus 8 ~~~~~al~~~-p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 8 GTIAMLNEIS-SD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CSHHHHTTCC-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHcCC-Hh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4688999999 98 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039 110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK 158 (206)
Q Consensus 110 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (206)
++|+++.++..++.++..+++..+ +...|++++. .|.+...
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAE--------AESGLFLAQELIANXPEF 125 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHHTTCGGG
T ss_pred cCCCCchHHHHHHHHHHHcCCHHH--------HHHHHHHHHHHCcCCCcc
Confidence 999999999999999999999888 4458888877 4544433
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.74 E-value=1.2e-16 Score=108.90 Aligned_cols=130 Identities=25% Similarity=0.394 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
.+++.+|..+...|++++|+..|++++... |+ +...+..+|.++...|++++|+..+++++...|.++.+++.+|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-Cc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 568899999999999999999999999999 88 78899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 90 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
++...|++++|...+++++...|.++.+...++.++...++..+ +..++++++.
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--------A~~~~~~~~~ 131 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE--------AIEYYQKALE 131 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH--------HHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHH--------HHHHHHHHHc
Confidence 99999999999999999999999999999999999888877777 4446666655
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.73 E-value=4.2e-17 Score=124.81 Aligned_cols=175 Identities=16% Similarity=0.124 Sum_probs=142.5
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---- 76 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---- 76 (206)
+|..+..+..+|.+++..|++++|+.+|.+++.+.. ++.+....++.++|.++...|++++|+..|++++.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999999999999999998720 112337889999999999999999999999999988
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 77 ----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV--------EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHN 144 (206)
Q Consensus 77 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (206)
+|....+++.+|.++...|++++|...+++++.+ .|....+...++.++...++..++...+.+....
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5777889999999999999999999999999998 6677788899999999988888766533333221
Q ss_pred H-----------------------------------------HHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 145 M-----------------------------------------FKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 145 ~-----------------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
. ++.... .|........++.++...|++++|...+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 275 (283)
T 3edt_B 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275 (283)
T ss_dssp HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 111111 2344566778899999999999998887
No 93
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.73 E-value=7.9e-17 Score=136.78 Aligned_cols=146 Identities=12% Similarity=0.004 Sum_probs=120.1
Q ss_pred cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1039 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY 101 (206)
Q Consensus 22 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~ 101 (206)
.|++++|+..|+++++.+ |+ +..++..+|.++...|++++|+..|+++++++|++..+++.+|.++..+|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478999999999999999 98 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHh---cccchhhH
Q psy1039 102 TDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVL---AREMSGAE 177 (206)
Q Consensus 102 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~a~~ 177 (206)
..|+++++++|++..++..++.++...++..+ +..+|++++. .|.+......++.++... |++++|..
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEA--------AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 99999999999999999999999999988888 4558888888 788899999999999999 88898888
Q ss_pred HH
Q psy1039 178 ML 179 (206)
Q Consensus 178 ~~ 179 (206)
.+
T Consensus 150 ~~ 151 (568)
T 2vsy_A 150 QV 151 (568)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 94
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.72 E-value=7.5e-17 Score=133.75 Aligned_cols=162 Identities=14% Similarity=0.063 Sum_probs=152.1
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
+|.++..++.+|..++..|++++|+..|++++... |+ ..++..+|.++...|++++|+..|++++.++|.++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 307 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-CC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH
Confidence 48889999999999999999999999999999999 87 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (206)
+.+|.++...|++++|...+++++..+|+++.++..++.++...++... +..+|++++. .|.+...+...+
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~~la 379 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD--------CETLFSEAKRKFPEAPEVPNFFA 379 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHH--------HHHHHHHHHHHSTTCSHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHHcccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999988888777 4458888777 788889999999
Q ss_pred hhhhHhcccchhhHHH
Q psy1039 164 NNLVVLAREMSGAEML 179 (206)
Q Consensus 164 ~~~~~~~~~~~a~~~~ 179 (206)
.++...|++++|...+
T Consensus 380 ~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 380 EILTDKNDFDKALKQY 395 (514)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 9999999999999888
No 95
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=1e-18 Score=139.72 Aligned_cols=148 Identities=12% Similarity=0.131 Sum_probs=135.5
Q ss_pred HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---------------HHHHH
Q psy1039 21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---------------PKALF 85 (206)
Q Consensus 21 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---------------~~~~~ 85 (206)
..+++++|+..|++++... |+ .+..+.++|.+++..|+|++|+..|++++.++|.+ ..+++
T Consensus 125 ~L~~~~~A~~~~~~a~~~~-p~---~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEK-LE---QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEEEECCCCGGGCCHHHH-HH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHH-HH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHH
Confidence 4566778888888888888 87 89999999999999999999999999999999999 69999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHh
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVN 164 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 164 (206)
++|.++..+|++++|+..|++++.++|+++.++..++.++..+++... +...|++++. .|.+...+..++.
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~--------A~~~~~~al~l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL--------ARADFQKVLQLYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888 5558999888 7899999999999
Q ss_pred hhhHhcccchhhHHHH
Q psy1039 165 NLVVLAREMSGAEMLL 180 (206)
Q Consensus 165 ~~~~~~~~~~a~~~~~ 180 (206)
++...+++++|...++
T Consensus 273 ~~~~~~~~~~a~~~~~ 288 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLY 288 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999987765544
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.71 E-value=4.8e-16 Score=116.96 Aligned_cols=141 Identities=12% Similarity=0.156 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH------------------ccCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK------------------QNQNDKVIE 68 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~------------------~~~~~~A~~ 68 (206)
....+++.+|.+++..|+|++|+..|+++++.. |+.+....+++.+|.++.. .|++++|+.
T Consensus 39 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 39 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 346899999999999999999999999999999 9744445689999999986 579999999
Q ss_pred HHHHHhhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHH
Q psy1039 69 DCSKSLEIVPDDPKAL-----------------FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIV 128 (206)
Q Consensus 69 ~~~~al~l~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~ 128 (206)
.|+++++.+|+++.++ +.+|.++...|++++|+..|+++++..|+++ .+...++.++..+
T Consensus 118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence 9999999999987654 6789999999999999999999999999986 6788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy1039 129 TKRMQENEQLQNKVHNMFKYVFD-TSAPM 156 (206)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (206)
++... +...++++.. .|.+.
T Consensus 198 g~~~~--------A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 198 QMNAQ--------AEKVAKIIAANSSNTL 218 (225)
T ss_dssp TCHHH--------HHHHHHHHHHCCSCCC
T ss_pred CCcHH--------HHHHHHHHHhhCCCch
Confidence 88887 4447777766 45443
No 97
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=5.7e-16 Score=118.53 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=129.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC
Q psy1039 17 NSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG 95 (206)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 95 (206)
..+...|++++|+..|+++++.. |. .+..+.+++.+|.++...|++++|+..|++++.++|.++.+++.+|.++...|
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASR-ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred eccCccchHHHHHHHHHHHHhcc-cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 33445689999999999999984 32 23378999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccch
Q psy1039 96 KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS 174 (206)
Q Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 174 (206)
++++|...|++++.++|+++.++..++.++...++..+ +..+|++++. .|.+.......+ .....|++++
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~--------A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~ 162 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL--------AQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQ 162 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHH--------HHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHH
Confidence 99999999999999999999999999999999888887 4458888877 566654444333 4466688888
Q ss_pred hhHHH
Q psy1039 175 GAEML 179 (206)
Q Consensus 175 a~~~~ 179 (206)
|...+
T Consensus 163 A~~~~ 167 (275)
T 1xnf_A 163 AKEVL 167 (275)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87776
No 98
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.70 E-value=1e-16 Score=112.18 Aligned_cols=118 Identities=8% Similarity=-0.044 Sum_probs=103.6
Q ss_pred HHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 30 ~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
..|.+++.++ |+ +...++.+|.+++..|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++.
T Consensus 5 ~~l~~al~~~-p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 5 GTLAMLRGLS-ED---TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp ----CCTTCC-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHcCC-HH---HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4678888888 88 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039 110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (206)
Q Consensus 110 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (206)
++|+++.++..++.++..+++..+ +..+|++++. .|.+....
T Consensus 81 ~~p~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQLGDLDG--------AESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHHHTCGGGH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCCcchH
Confidence 999999999999999999999888 4447777776 45444433
No 99
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=1.2e-15 Score=119.40 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=134.3
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--cccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
+|....++..++..+...|++++|+..+++.+.. + |+ ++.+++.+|.++...|++++|+..|++ |+++.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~-P~---~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~ 131 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVD-VT---NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLE 131 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCC-CS---CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHH
Confidence 4557788999999999999999999999998864 6 87 788999999999999999999999988 89999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS--RLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (206)
++..+|.++..+|++++|.+.+++++..+|++.......+ .+....++..+ +..+|++++. .|.+...+
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~e--------A~~~~~~~l~~~p~~~~~~ 203 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD--------AYYIFQEMADKCSPTLLLL 203 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHH--------HHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHH--------HHHHHHHHHHhCCCcHHHH
Confidence 9999999999999999999999999999999764333222 22212234444 5568888888 78999999
Q ss_pred HHHHhhhhHhcccchhhHHH
Q psy1039 160 VTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~ 179 (206)
..++.++...|++++|...+
T Consensus 204 ~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999888
No 100
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.70 E-value=5.9e-16 Score=121.02 Aligned_cols=165 Identities=11% Similarity=0.008 Sum_probs=129.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhhCCCC-
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQ-NQNDKVIEDCSKSLEIVPDD- 80 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~l~p~~- 80 (206)
+..+.++.++|.++...|++++|+.+|++++.+. |. ....+.++.++|.+|... |++++|+.+|++++++.|.+
T Consensus 74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 3457899999999999999999999999999998 63 122367899999999996 99999999999999998864
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 81 -----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-------IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY 148 (206)
Q Consensus 81 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (206)
..++.++|.++..+|++++|+..|++++.+.|++.. +...++.++..+++... +..+|++
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~ 224 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA--------AARTLQE 224 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHH--------HHHHHHG
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHH--------HHHHHHH
Confidence 567899999999999999999999999999998764 45777888888777777 5559999
Q ss_pred hcC-CCCChhh-----hHHHHhhhh--HhcccchhhHHH
Q psy1039 149 VFD-TSAPMDK-----RVTAVNNLV--VLAREMSGAEML 179 (206)
Q Consensus 149 ~~~-~~~~~~~-----~~~~~~~~~--~~~~~~~a~~~~ 179 (206)
++. .|..... ...++..+. ..+++.+|+..+
T Consensus 225 al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 988 4543332 222333332 345567777777
No 101
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.69 E-value=8.4e-17 Score=108.97 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=86.0
Q ss_pred HcCCHHHHHHHHHHHHhc---cccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH
Q psy1039 21 KQGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF 97 (206)
Q Consensus 21 ~~g~~~~A~~~~~~al~~---~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 97 (206)
..|++++|+.+|++++++ + |+ +..++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~-p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQG-KD---LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCH-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCCC-cc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH
Confidence 468999999999999999 5 66 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHH
Q psy1039 98 EEAYTDAKHIHRVEPTNKAIQP 119 (206)
Q Consensus 98 ~~A~~~~~~al~~~p~~~~~~~ 119 (206)
++|+..+++++...|+++.+..
T Consensus 78 ~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999987643
No 102
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=3.3e-16 Score=121.68 Aligned_cols=176 Identities=16% Similarity=0.143 Sum_probs=142.7
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-- 77 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-- 77 (206)
.+|..+..+..+|.++...|++++|+.+|++++.+.. ++.+....++..+|.++...|++++|+..|++++.+.
T Consensus 64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999998730 1113378899999999999999999999999999884
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 78 ------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV--------EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVH 143 (206)
Q Consensus 78 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (206)
|....+++.+|.++...|++++|...+++++.+ .|....+...++.++...++..++...+.+...
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566788999999999999999999999999998 666778888999999988888876653333322
Q ss_pred H-----------------------------------------HHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 144 N-----------------------------------------MFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 144 ~-----------------------------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
. .++.+.. .|........++.++...|++++|...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1 1222222 3556777888999999999999999888
No 103
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.69 E-value=4.8e-17 Score=135.81 Aligned_cols=125 Identities=25% Similarity=0.418 Sum_probs=115.9
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
.+..+..++.+|..++..|+|++|+..|+++++++ |+ +..++.++|.++..+|++++|+..|+++++++|+++.++
T Consensus 2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 77 (477)
T 1wao_1 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELN-PS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY 77 (477)
T ss_dssp CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45677888999999999999999999999999999 98 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHHHHH
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL--FAIVTKRMQ 133 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~ 133 (206)
+++|.++..+|++++|.+.|+++++++|++..+...++.+ +...++..+
T Consensus 78 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~ 128 (477)
T 1wao_1 78 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 128 (477)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888 444455444
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.68 E-value=7.2e-16 Score=120.54 Aligned_cols=164 Identities=8% Similarity=0.033 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-----
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAE---ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----- 80 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----- 80 (206)
...+...|.++...|+|++|+.+|.+++++. + +....+.++.++|.+|..+|++++|+.+|++++.+.|..
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQ-KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3456777889999999999999999999985 4 222347889999999999999999999999999998754
Q ss_pred -HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039 81 -PKALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD- 151 (206)
Q Consensus 81 -~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (206)
..++.++|.++... |++++|+.+|++++.+.|++ ..+...++.++...++..+ +..+|++++.
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~al~~ 187 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE--------ASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH--------HHHHHHHHHHH
Confidence 56899999999996 99999999999999998865 3557778888888887777 5558888887
Q ss_pred CCCChh-------hhHHHHhhhhHhcccchhhHHHHh
Q psy1039 152 TSAPMD-------KRVTAVNNLVVLAREMSGAEMLLK 181 (206)
Q Consensus 152 ~~~~~~-------~~~~~~~~~~~~~~~~~a~~~~~~ 181 (206)
.|.... ....++.++..+|++++|...+-+
T Consensus 188 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 188 SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 443332 457789999999999999888754
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.68 E-value=4e-16 Score=112.99 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=111.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH-HHHccCHHHHHHHHHHHhhhCCC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAV-YLKQNQNDKVIEDCSKSLEIVPD 79 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~l~p~ 79 (206)
++..+|+++.+++.+|.++...|++++|+..|++++... |+ +..+..++.+ +...+...+|+..++++++++|+
T Consensus 32 al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~----~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~ 106 (176)
T 2r5s_A 32 LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-QD----NSYKSLIAKLELHQQAAESPELKRLEQELAANPD 106 (176)
T ss_dssp SCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-CC----HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT
T ss_pred HHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-CC----hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC
Confidence 467899999999999999999999999999999999998 84 2333334433 22334555689999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHHHHHH
Q psy1039 80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--KAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
++.+++.+|.++...|++++|+..|++++..+|+. +.++..++.++...++...+..
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 99999999999999999999999999999999986 5599999999998887776443
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.68 E-value=3.2e-16 Score=122.41 Aligned_cols=131 Identities=11% Similarity=-0.015 Sum_probs=122.1
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+..+|+++.+++.+|.++...|++++|+..|++++..+ |+ ........+..+...++..+|+..|++++..+|+++
T Consensus 144 l~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-p~---~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~ 219 (287)
T 3qou_A 144 WQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-QD---TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDA 219 (287)
T ss_dssp HHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-CS---HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCH
T ss_pred HHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-cc---hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccH
Confidence 56789999999999999999999999999999999999 98 777788888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHHHHHH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--KAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
.+++.+|.++...|++++|...|++++..+|++ ..++..++.++..+++...+..
T Consensus 220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 999999999999999999999999999999998 8899999999998887666444
No 107
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=5.4e-16 Score=127.87 Aligned_cols=170 Identities=14% Similarity=0.039 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--------cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--------EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV- 77 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--------p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~- 77 (206)
..+..+..+|.++...|++++|+++|++|+++.. |. ....|.++|.+|..+|++++|+.+|++++.+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~---~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR---SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT---THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 3456778899999999999999999999998731 33 57789999999999999999999999998873
Q ss_pred -------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH-----------
Q psy1039 78 -------PDDPKALFRRCQAYEAIG--KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQ----------- 137 (206)
Q Consensus 78 -------p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~----------- 137 (206)
+..+.++..+|.++...| +|++|+.+|++++.++|+++.+...++.+...++...+....
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 456788888888877654 699999999999999999999998888876655443211110
Q ss_pred ----------------------HHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 138 ----------------------LQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 138 ----------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
....+..++++++. .|........++.++...|++++|...+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 00113445555555 5666666666666666666666666666
No 108
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.68 E-value=1.3e-16 Score=113.10 Aligned_cols=101 Identities=19% Similarity=0.145 Sum_probs=91.5
Q ss_pred HHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 20 FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN----------DKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 20 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
-+.+.|++|+..|+++++++ |+ ++..|+++|.++...+++ ++|+..|+++++++|++..+|+++|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34567999999999999999 99 899999999999999876 59999999999999999999999999
Q ss_pred HHHHcC-----------CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039 90 AYEAIG-----------KFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (206)
Q Consensus 90 ~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 124 (206)
+|..+| ++++|+++|+++++++|++......+..+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999885 89999999999999999998766655433
No 109
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=2.9e-15 Score=115.30 Aligned_cols=156 Identities=12% Similarity=0.065 Sum_probs=108.6
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhCCCC
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~ 80 (206)
+|+++.+++.+|..++..|++++|+.+|+++++.+ +..+++++|.++.. .+++++|+.+|+++++++ +
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~ 73 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y 73 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C
Confidence 46777788888888888888888888888887743 35677778888888 888888888888887775 6
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1039 81 PKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKYVFDT 152 (206)
Q Consensus 81 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
+.+++.+|.++.. .+++++|+..|++++.. +++.+...++.++.. .++..+ +..+|++++..
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~--------A~~~~~~a~~~ 143 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKK--------AVEYFTKACDL 143 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH--------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHH--------HHHHHHHHHhc
Confidence 7788888888888 88888888888888776 367777777777766 555555 33355555552
Q ss_pred CCChhhhHHHHhhhhH----hcccchhhHHH
Q psy1039 153 SAPMDKRVTAVNNLVV----LAREMSGAEML 179 (206)
Q Consensus 153 ~~~~~~~~~~~~~~~~----~~~~~~a~~~~ 179 (206)
.+......++.++.. .+++++|...+
T Consensus 144 -~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~ 173 (273)
T 1ouv_A 144 -NDGDGCTILGSLYDAGRGTPKDLKKALASY 173 (273)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 244555556666655 55555555554
No 110
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=121.86 Aligned_cols=177 Identities=18% Similarity=0.145 Sum_probs=142.3
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--- 76 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--- 76 (206)
.+|..+..+..+|..++..|++++|+.+|++++++.. ++.+....++..+|.++...|++++|+..|++++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999620 112237889999999999999999999999999988
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 77 -----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE--------PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVH 143 (206)
Q Consensus 77 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (206)
+|....+++.+|.++...|++++|...+++++.+. |....+...++.++...++...+...+. .+.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~-~a~ 180 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ-RAL 180 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHH
Confidence 45667899999999999999999999999999874 4556777888888888887777544222 222
Q ss_pred HHHHHhcC--CCCChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039 144 NMFKYVFD--TSAPMDKRVTAVNNLVVLAREMSGAEMLLK 181 (206)
Q Consensus 144 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 181 (206)
..++.... .+........++.++...|++++|...+-+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333322 344566788899999999999999988843
No 111
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.67 E-value=9.5e-16 Score=123.73 Aligned_cols=161 Identities=12% Similarity=0.075 Sum_probs=134.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-------HH
Q psy1039 12 LKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-------PK 82 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-------~~ 82 (206)
++..|..++..|++++|+.+|++++.+.. |+....+.++.++|.++..+|++++|+.++++++.+.+.. ..
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 44599999999999999999999999831 3444478899999999999999999999999999985443 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD----- 151 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 151 (206)
++..+|.++..+|++++|...|++++.+.|... .+...++.++...++..++.. +|++++.
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~--------~~~~al~~~~~~ 257 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP--------YFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHHHHhh
Confidence 899999999999999999999999999876544 478888999988888877544 4444443
Q ss_pred -C-CCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039 152 -T-SAPMDKRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 152 -~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
. |........++.++...|++++|...+-
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 288 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHS 288 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 5567778899999999999999998883
No 112
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.2e-15 Score=124.16 Aligned_cols=175 Identities=9% Similarity=0.021 Sum_probs=131.4
Q ss_pred cccchhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHHh
Q psy1039 2 IDNNMNDYNKLKESGNSAFK---QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ----NQNDKVIEDCSKSL 74 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~---~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al 74 (206)
+..+|+++..+..+|.+++. .|++++|+..|+++++++ |+ +..++..+|..+... |++++|+..+++++
T Consensus 165 l~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~---~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al 240 (472)
T 4g1t_A 165 LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD---NQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL 240 (472)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS---CHHHHHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc---chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34556666666666665443 345566666666666666 66 566677777665544 56789999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q psy1039 75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE-----------NEQLQNKVH 143 (206)
Q Consensus 75 ~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~ 143 (206)
.++|+++.++..+|.++...|++++|+..++++++.+|++..++..++.++......... .......+.
T Consensus 241 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 320 (472)
T 4g1t_A 241 EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV 320 (472)
T ss_dssp HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHH
T ss_pred HhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999887654332111 111223466
Q ss_pred HHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
.+|+++.. .|........++.++...|++++|...+-
T Consensus 321 ~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 358 (472)
T 4g1t_A 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ 358 (472)
T ss_dssp HHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence 78888888 78888889999999999999999988773
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.66 E-value=2.7e-16 Score=113.59 Aligned_cols=127 Identities=11% Similarity=0.120 Sum_probs=112.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH-HHHcCC
Q psy1039 18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA-YEAIGK 96 (206)
Q Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~-~~~~g~ 96 (206)
.+...|++++|+..|++++..+ |+ +..++..+|.++...|++++|+..|++++.++|+++.+++.+|.+ +...|+
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ 94 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Confidence 3567899999999999999999 98 889999999999999999999999999999999999999999999 889999
Q ss_pred H--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy1039 97 F--EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM 156 (206)
Q Consensus 97 ~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (206)
+ ++|...+++++..+|+++.++..++.++...++... +..+|++++. .|.+.
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~--------A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQ--------AIELWQKVMDLNSPRI 149 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHTCCTTS
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHH--------HHHHHHHHHhhCCCCc
Confidence 9 999999999999999999999999999999888887 5558888877 45443
No 114
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.66 E-value=2.1e-16 Score=116.42 Aligned_cols=155 Identities=10% Similarity=0.046 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH--------
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-------- 81 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~-------- 81 (206)
......+......|++++|.+.|....... +. .+..+..+|.+++..|+|++|+..|++++.+.|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (198)
T 2fbn_A 5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEK-VQ---SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL 80 (198)
T ss_dssp -----------------CCCSGGGCCHHHH-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred ccccchhhhhhhhhhccccCchhhCCHHHH-HH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 344455666777788888888887766655 55 788899999999999999999999999999999887
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Q psy1039 82 --------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-T 152 (206)
Q Consensus 82 --------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 152 (206)
.+++++|.++..+|++++|+..+++++.++|++..++..++.++..+++... +..+|++++. .
T Consensus 81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~--------A~~~~~~al~~~ 152 (198)
T 2fbn_A 81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE--------AKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH--------HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHH--------HHHHHHHHHHHC
Confidence 8999999999999999999999999999999999999999999999998888 5558888888 7
Q ss_pred CCChhhhHHHHhhhhHhcccchhh
Q psy1039 153 SAPMDKRVTAVNNLVVLAREMSGA 176 (206)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~ 176 (206)
|.+...+..++.++...++..++.
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998876555
No 115
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=2.1e-15 Score=122.14 Aligned_cols=172 Identities=13% Similarity=0.128 Sum_probs=140.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh------CC
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------VP 78 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p 78 (206)
+..+..++.+|..++..|++++|+.+|+++++.. |+. .....++..+|.++...|++++|+..|++++.+ .|
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 6778889999999999999999999999999999 862 223468999999999999999999999999988 67
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHHHH-----------------HHHHH
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV------EPTNKAIQPVLSRLFAIVTK-----------------RMQEN 135 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~-----------------~~~~~ 135 (206)
....+++.+|.++...|++++|...+++++.+ .|....+...++.++...++ ...+.
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 77889999999999999999999999999998 45566788889999988888 55533
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 136 EQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.. ...+..++....+.+........++.++...|++++|...+
T Consensus 204 ~~-~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 204 EF-YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HH-HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 31 11222233333223444567788999999999999988887
No 116
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.8e-15 Score=103.31 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
.+..+..+|.+++..|+|++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++.++|+++.++..++.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-C------CCChhhhHHHHhhh
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFD-T------SAPMDKRVTAVNNL 166 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~ 166 (206)
..+++..++ ...|++++. . |.+...+..+..+.
T Consensus 83 ~~~~~~~~A--------~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASA--------LETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHH--------HHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHH--------HHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 999988884 447777666 4 66666666555544
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.65 E-value=3.4e-15 Score=117.61 Aligned_cols=173 Identities=9% Similarity=-0.032 Sum_probs=145.8
Q ss_pred CcccchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH----HHc---cCHHHHHHHHH
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVY----LKQ---NQNDKVIEDCS 71 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~----~~~---~~~~~A~~~~~ 71 (206)
+|..+|++..+|+.+|.++...| ++++++.++..++..+ |. +..+|..++.++ ... +++.+++..+.
T Consensus 59 ~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk---~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~ 134 (306)
T 3dra_A 59 GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EK---NYQIWNYRQLIIGQIMELNNNDFDPYREFDILE 134 (306)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TT---CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cc---cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 36789999999999999999999 9999999999999999 98 899999999999 777 78999999999
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1039 72 KSLEIVPDDPKALFRRCQAYEAIGKFE--EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV 149 (206)
Q Consensus 72 ~al~l~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (206)
++++.+|.+..+|+.++.++..+|.++ +++..+.++++.+|.|-.++...+.+...++.... .........+++++
T Consensus 135 ~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~--~~~~~eEl~~~~~a 212 (306)
T 3dra_A 135 AMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT--DNTIDEELNYVKDK 212 (306)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC--HHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch--hhhHHHHHHHHHHH
Confidence 999999999999999999999999998 99999999999999999999999888876654100 00111244577777
Q ss_pred cC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 150 FD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 150 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+. .|.+...+.-...++...|+..+++..+
T Consensus 213 I~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~ 243 (306)
T 3dra_A 213 IVKCPQNPSTWNYLLGIHERFDRSITQLEEF 243 (306)
T ss_dssp HHHCSSCHHHHHHHHHHHHHTTCCGGGGHHH
T ss_pred HHhCCCCccHHHHHHHHHHhcCCChHHHHHH
Confidence 77 7888888888888888888865555444
No 118
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=1.3e-14 Score=111.71 Aligned_cols=155 Identities=12% Similarity=0.101 Sum_probs=115.3
Q ss_pred hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhC
Q psy1039 6 MNDYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIV 77 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~ 77 (206)
|+++.+++.+|..+.. .|++++|+.+|+++++.+ ++.+++++|.++.. .+++++|+.+|++++..+
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 108 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 108 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence 5667788888888888 888888888888888876 46778888888888 888888888888888764
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q psy1039 78 PDDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKYV 149 (206)
Q Consensus 78 p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 149 (206)
++.+++.+|.++.. .+++++|+..|+++++.+ ++.+...++.++.. .++..+ +..+|+++
T Consensus 109 --~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~--------A~~~~~~a 176 (273)
T 1ouv_A 109 --YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKK--------ALASYDKA 176 (273)
T ss_dssp --CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH--------HHHHHHHH
T ss_pred --CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHH--------HHHHHHHH
Confidence 77888888888888 888888888888888765 56677777777665 455444 33466666
Q ss_pred cCCCCChhhhHHHHhhhhH----hcccchhhHHH
Q psy1039 150 FDTSAPMDKRVTAVNNLVV----LAREMSGAEML 179 (206)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~ 179 (206)
++. .+......++.++.. .+++++|...+
T Consensus 177 ~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 177 CDL-KDSPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp HHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 552 345566667777776 66666666665
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.64 E-value=8.4e-15 Score=108.40 Aligned_cols=105 Identities=12% Similarity=0.151 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH------
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP------ 81 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~------ 81 (206)
++..++.+|.+++..|++++|+..|++++.++ |+ +..+++++|.++...|++++|+..|++++++.|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 111 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc---chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 57899999999999999999999999999999 98 889999999999999999999999999999988877
Q ss_pred ----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039 82 ----------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116 (206)
Q Consensus 82 ----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 116 (206)
.+++.+|.++..+|++++|...|++++.++|++..
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999998743
No 120
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.64 E-value=3.2e-15 Score=102.82 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
.+.++.++|.++++.|+|++|+..|+++++++|+++.+|+++|.++..+|+|++|+..|+++++++|++......++.++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999998876555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..++......+.++ .+..+|++++.
T Consensus 87 ~~lg~~~~~~~~~~-~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLS-LAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHH-HHHHHHHHHHh
Confidence 54444333332222 14557777766
No 121
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.64 E-value=1.5e-16 Score=132.02 Aligned_cols=148 Identities=11% Similarity=0.113 Sum_probs=131.2
Q ss_pred cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---------------HHHHHH
Q psy1039 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---------------PKALFR 86 (206)
Q Consensus 22 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---------------~~~~~~ 86 (206)
.+++++|+..|.+++... |+ .+..+.++|.+++..|+|.+|+..|++++.++|.+ ..+|++
T Consensus 247 l~~~~~A~~~~~~~~~~~-~~---~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK-LE---QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEECCCCGGGSCHHHH-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH-HH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence 446677888888888888 87 89999999999999999999999999999999998 699999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN 165 (206)
Q Consensus 87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 165 (206)
+|.++..+|+|++|+.+|++++.++|++..++..++.++..+++... +...|++++. .|.+...+..++.+
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~--------A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES--------AKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHH--------HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888 5559999999 78889999999999
Q ss_pred hhHhcccchhhHHHHh
Q psy1039 166 LVVLAREMSGAEMLLK 181 (206)
Q Consensus 166 ~~~~~~~~~a~~~~~~ 181 (206)
+...++++++...+++
T Consensus 395 ~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYA 410 (457)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999877766654
No 122
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.64 E-value=3.7e-15 Score=101.29 Aligned_cols=108 Identities=29% Similarity=0.474 Sum_probs=102.5
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..+|.+...++.+|..+...|++++|+.+|++++... |. ....+..+|.++...|++++|+..+++++...|.+..
T Consensus 29 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 104 (136)
T 2fo7_A 29 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104 (136)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 4567888999999999999999999999999999999 88 7888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
+++.+|.++...|++++|...+++++..+|++
T Consensus 105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 105 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999864
No 123
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=3.7e-15 Score=120.23 Aligned_cols=169 Identities=14% Similarity=0.092 Sum_probs=137.0
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-----h
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE---ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-----I 76 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----l 76 (206)
.+..+..+..+|.++...|++++|+.+|.+++++. + +....+.++.++|.+|..+|++++|+.+|++++. .
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 45678899999999999999999999999999986 4 2334567899999999999999999999999999 4
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1039 77 V-PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-----NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF 150 (206)
Q Consensus 77 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
+ |....+++.+|.++..+|++++|...+++++.+.+. .......++.++...++.. ....+..++++..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~al~~~~~~~ 333 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE-----AIQGFFDFLESKM 333 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH-----HHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHCc
Confidence 6 778899999999999999999999999999998542 2223344555555444321 1223666777775
Q ss_pred CCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 151 DTSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
..+........++.++...|++++|...+
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 362 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYF 362 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55666777888999999999999999998
No 124
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=7.7e-15 Score=114.45 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=136.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh------CC
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------VP 78 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p 78 (206)
+..+..++..|..++..|++++|+.+|+++++.. |+. .....++..+|.++...|++++|+..+++++.+ .|
T Consensus 2 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence 3467789999999999999999999999999998 862 223678999999999999999999999999887 45
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHHHHH--------------------HH
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVTK--------------------RM 132 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~--------------------~~ 132 (206)
....++..+|.++...|++++|...+++++.+.|.... +...++.++...++ ..
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 56788999999999999999999999999998775543 77888888888887 55
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 133 QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.+.... ..+...++...+.+.........+.++...|++++|...+
T Consensus 161 ~A~~~~-~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 206 (338)
T 3ro2_A 161 AAVDLY-EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 206 (338)
T ss_dssp HHHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 533311 1222223332223344567788899999999999998888
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=6.3e-15 Score=125.34 Aligned_cols=162 Identities=10% Similarity=-0.010 Sum_probs=145.9
Q ss_pred CcccchhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc--CHHHHHH
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGD----------YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--QNDKVIE 68 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~--~~~~A~~ 68 (206)
+|..+|++..+|+.+|.++...|+ +++++..++++++.+ |. +..+|++++-++..++ +++++++
T Consensus 55 ~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK---~y~aW~hR~w~l~~l~~~~~~~el~ 130 (567)
T 1dce_A 55 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PK---SYGTWHHRCWLLSRLPEPNWARELE 130 (567)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcccccHHHHHH
Confidence 356799999999999999999998 999999999999999 99 8999999999999999 7799999
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH--------------HHHHH
Q psy1039 69 DCSKSLEIVPDDPKALFRRCQAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV--------------TKRMQ 133 (206)
Q Consensus 69 ~~~~al~l~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------~~~~~ 133 (206)
.++++++++|.+..+|..++.++..+| .++++++++.++++.+|.+..++...+.+...+ +...+
T Consensus 131 ~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~e 210 (567)
T 1dce_A 131 LCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK 210 (567)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHH
Confidence 999999999999999999999999999 999999999999999999999999999998876 22222
Q ss_pred HHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccch
Q psy1039 134 ENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS 174 (206)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 174 (206)
...++.+++. .|.+...|.-....+...+++.+
T Consensus 211 --------el~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 211 --------ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp --------HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred --------HHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 4557777777 79999999888888888777543
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.63 E-value=3.9e-15 Score=111.20 Aligned_cols=160 Identities=14% Similarity=0.033 Sum_probs=137.6
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHhhhCCCC
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN----QNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~l~p~~ 80 (206)
+..++.+++.+|..+...+++++|+.+|+++++.+ ++.+++++|.+|.. + ++++|+.+|+++. ++.+
T Consensus 14 ~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~ 84 (212)
T 3rjv_A 14 EAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGS 84 (212)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTC
T ss_pred HCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCC
Confidence 34688999999999999999999999999999876 57899999999988 7 8999999999995 4679
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc
Q psy1039 81 PKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEP--TNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKYVF 150 (206)
Q Consensus 81 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
+.+++.+|.+|.. .+++++|+..|+++....| +++.+...++.++.. .++..+ +..+|+++.
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~--------A~~~~~~A~ 156 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK--------ASEYFKGSS 156 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH--------HHHHHHHHH
Confidence 9999999999998 8999999999999999988 458999999999877 444555 566999998
Q ss_pred CCCCChhhhHHHHhhhhHhc------ccchhhHHHHh
Q psy1039 151 DTSAPMDKRVTAVNNLVVLA------REMSGAEMLLK 181 (206)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~ 181 (206)
..+.+......++.+|.... ++++|..++-+
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNV 193 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence 86667778889999887653 56888888754
No 127
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=5.8e-15 Score=118.70 Aligned_cols=172 Identities=15% Similarity=0.120 Sum_probs=138.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh------CC
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------VP 78 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p 78 (206)
+..+..++..|..++..|++++|+.+|++++... |+. .....++..+|.++...|++++|+..|++++.+ .|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4567789999999999999999999999999998 862 223578999999999999999999999999887 44
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHH--------------------HH
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTK--------------------RM 132 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~--------------------~~ 132 (206)
....+++.+|.++...|++++|...+++++.+.|.. ..+...++.++...++ ..
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 557889999999999999999999999999987754 3478888888888888 55
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 133 QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.+.... ..+...+....+.+........++.++...|++++|...+
T Consensus 165 ~A~~~~-~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (406)
T 3sf4_A 165 AAVDFY-EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210 (406)
T ss_dssp HHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 544311 1222333333223444567788999999999999999888
No 128
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.61 E-value=1.2e-14 Score=117.31 Aligned_cols=174 Identities=14% Similarity=0.070 Sum_probs=135.2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-----hCC
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-----IVP 78 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----l~p 78 (206)
+..+..+..+|.++...|++++|+.+|.+++++.. ++....+.++.++|.+|..+|++++|+.+|++++. .+|
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 45678899999999999999999999999999751 13334677899999999999999999999999999 788
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQ---PVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTS 153 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (206)
....+++.+|.++..+|++++|...+++++.+.+. ++... ..++.++...++. .....+..++++....+
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~-----~~~~~al~~~~~~~~~~ 333 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE-----RKIHDLLSYFEKKNLHA 333 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH-----HHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHhCCChh
Confidence 88999999999999999999999999999998654 33222 2333333222221 11223555666654445
Q ss_pred CChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039 154 APMDKRVTAVNNLVVLAREMSGAEMLLKSGV 184 (206)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 184 (206)
........++.++...|++++|...+-+.-.
T Consensus 334 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566778899999999999999998855444
No 129
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.61 E-value=2.5e-14 Score=97.52 Aligned_cols=99 Identities=10% Similarity=-0.016 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
..++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CCC
Q psy1039 128 VTKRMQENEQLQNKVHNMFKYVFD-TSA 154 (206)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (206)
.++..+ +...|++++. .|.
T Consensus 98 ~g~~~~--------A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANA--------ALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHH--------HHHHHHHHHC----
T ss_pred cCCHHH--------HHHHHHHHHHhCcC
Confidence 998888 4558888877 443
No 130
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.60 E-value=4.1e-15 Score=117.16 Aligned_cols=167 Identities=10% Similarity=-0.014 Sum_probs=147.7
Q ss_pred cccchhhHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHH--HHHHHHHH
Q psy1039 2 IDNNMNDYNKLKESGNSA----FKQ---GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND--KVIEDCSK 72 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~----~~~---g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~ 72 (206)
|..+|++..+|+.++.++ ... +++++++.++.++++.+ |. +..+|..++-++...|.++ ++++.+.+
T Consensus 96 L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pk---ny~aW~~R~~vl~~l~~~~~~~EL~~~~~ 171 (306)
T 3dra_A 96 ALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PK---NHHVWSYRKWLVDTFDLHNDAKELSFVDK 171 (306)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 567999999999999999 776 89999999999999999 99 8999999999999999999 99999999
Q ss_pred HhhhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 73 SLEIVPDDPKALFRRCQAYEAIGK------FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF 146 (206)
Q Consensus 73 al~l~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (206)
+++.+|.|..+|..++.++..+|. ++++++.+.+++..+|+|.+++..++.+....+.... .+..+.
T Consensus 172 ~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~-------~~~~~~ 244 (306)
T 3dra_A 172 VIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSIT-------QLEEFS 244 (306)
T ss_dssp HHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGG-------GGHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChH-------HHHHHH
Confidence 999999999999999999999998 9999999999999999999999999999887764322 144566
Q ss_pred HHhcC-C---CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 147 KYVFD-T---SAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 147 ~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.++.. . +.+.....-++.++.+.|+.++|.+.+
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 66665 3 567778888999999989888888766
No 131
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=8e-16 Score=102.21 Aligned_cols=96 Identities=25% Similarity=0.422 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------H
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------P 81 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~ 81 (206)
++..++.+|..++..|+|++|+..|+++++++ |+ ++.+++++|.++..+|++++|+..|+++++++|++ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 57889999999999999999999999999999 98 78999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
.+++.+|.++..+|+++.|+..+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 99999999999999888887665543
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.60 E-value=1.8e-14 Score=102.89 Aligned_cols=106 Identities=20% Similarity=0.232 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
.+..++.+|.+++..|+|++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++.++|++..++..++.++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (206)
..+++... +..+|++++. .|.+...+
T Consensus 90 ~~~g~~~~--------A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 90 FDMADYKG--------AKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHTTCHHH--------HHHHHHHHHHHHSSSCCHH
T ss_pred HHccCHHH--------HHHHHHHHHHhCCCchHHH
Confidence 99998888 4558888887 56665533
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.59 E-value=6.3e-14 Score=99.20 Aligned_cols=128 Identities=17% Similarity=0.089 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
.+..+..+|.+++..|++++|+..|++++.++|.+..+++.+|.++...|++++|...+++++..+|+++.++..++.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh--HHHHhhhhHhcccchhhHHHHh
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR--VTAVNNLVVLAREMSGAEMLLK 181 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~ 181 (206)
...++... +..+|++++. .|.+...+ ...+..+...|++++|++.+-+
T Consensus 92 ~~~~~~~~--------A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 92 MALGKFRA--------ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHTTCHHH--------HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 99888887 4558888888 67777777 4455558888999999998843
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.59 E-value=5.9e-14 Score=95.01 Aligned_cols=120 Identities=14% Similarity=0.213 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
....+..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++.++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccc
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREM 173 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (206)
...++... +..+|++++. .|.+...+..++.++...|+++
T Consensus 91 ~~~~~~~~--------A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVE--------AVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHH--------HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHH--------HHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99888877 4558888888 7888899999999999888764
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-14 Score=97.69 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
....++.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|...+++++..+|++..++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcc
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAR 171 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (206)
...++..+ +..+|++++. .|.+...+..++.++..+|+
T Consensus 95 ~~~~~~~~--------A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTK--------AMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHH--------HHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHH--------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99888877 4558888887 67788888888888877663
No 136
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=1.6e-14 Score=121.57 Aligned_cols=166 Identities=11% Similarity=0.049 Sum_probs=129.6
Q ss_pred cccchhhHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-ccccCcHHHHHHHHHHHHHHHHccCHHHH
Q psy1039 2 IDNNMNDYNKLKESGNSAFK-------QGDYE-------TALDFYTKALK-VTAEESHERATCLKNRAAVYLKQNQNDKV 66 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~-------~g~~~-------~A~~~~~~al~-~~~p~~~~~~~~~~~la~~~~~~~~~~~A 66 (206)
+..+|+++..|...|..+.. .|+++ +|+..|+++++ .. |+ +..+|..+|..+...|++++|
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~-p~---~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KK---NMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC-SS---CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHhcCCHHHH
Confidence 45578888999999998886 68876 88999999997 78 88 788899999999999999999
Q ss_pred HHHHHHHhhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy1039 67 IEDCSKSLEIVPDDP-KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA-IVTKRMQENEQLQNKVHN 144 (206)
Q Consensus 67 ~~~~~~al~l~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 144 (206)
...|+++++++|.++ .+|..+|..+...|++++|...|++++...|.+.......+.+.. ..++... +..
T Consensus 341 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~--------A~~ 412 (530)
T 2ooe_A 341 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV--------AFK 412 (530)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHH--------HHH
T ss_pred HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhH--------HHH
Confidence 999999999998885 688888888888889999999999998888876555544333321 2233333 455
Q ss_pred HHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 145 MFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 145 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+|++++. .|.+...+...+..+...|+.+.|...+
T Consensus 413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 7777777 6777888888888888888877766665
No 137
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.58 E-value=1.4e-13 Score=109.24 Aligned_cols=157 Identities=11% Similarity=0.023 Sum_probs=133.1
Q ss_pred CcccchhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC--HHHHHH
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGD----------YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ--NDKVIE 68 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~--~~~A~~ 68 (206)
+|..+|++..+|+.++.++...|. +++++.++..++..+ |. +..+|..++.++...++ +++++.
T Consensus 56 ~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PK---ny~aW~hR~wlL~~l~~~~~~~EL~ 131 (331)
T 3dss_A 56 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PK---SYGTWHHRCWLLSRLPEPNWARELE 131 (331)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred HHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHhccCcccHHHHHH
Confidence 367899999999999999998776 789999999999999 99 89999999999999994 999999
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH------HHHHHHHHH
Q psy1039 69 DCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM------QENEQLQNK 141 (206)
Q Consensus 69 ~~~~al~l~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~ 141 (206)
.+.++++++|.|..+|..++.+....|. +++++.++.+++..+|.|.+++...+.+...+.... .........
T Consensus 132 ~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~e 211 (331)
T 3dss_A 132 LCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK 211 (331)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHH
Confidence 9999999999999999999999999999 699999999999999999999999999988772100 000001112
Q ss_pred HHHHHHHhcC-CCCChhhhHH
Q psy1039 142 VHNMFKYVFD-TSAPMDKRVT 161 (206)
Q Consensus 142 ~~~~~~~~~~-~~~~~~~~~~ 161 (206)
...++..++. .|.+...+.=
T Consensus 212 Ele~~~~ai~~~P~d~SaW~Y 232 (331)
T 3dss_A 212 ELELVQNAFFTDPNDQSAWFY 232 (331)
T ss_dssp HHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 4557777777 7888887753
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=1.9e-13 Score=106.53 Aligned_cols=165 Identities=13% Similarity=0.015 Sum_probs=132.9
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD- 80 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~- 80 (206)
+|.....+...+..++..|+|++|+..+.++++.. |.. ......++.+|.++...|++++|+..|++++.+.+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 149 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence 45667778899999999999999999999999987 642 1233456779999999999999999999999876543
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 81 -----PKALFRRCQAYEAIGKFEEAYTDAKHIH---RVEPTNK----AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY 148 (206)
Q Consensus 81 -----~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (206)
..+++.+|.+|...|++++|..+|++++ ...|++. .+..+++.++...++..++.. ++++
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~--------~~~k 221 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY--------QVNK 221 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH--------HHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH--------HHHH
Confidence 5689999999999999999999999999 5566643 578889999998888888554 4444
Q ss_pred hcC-------CCCChhhhHHHHhhhhHhcccchhhHH
Q psy1039 149 VFD-------TSAPMDKRVTAVNNLVVLAREMSGAEM 178 (206)
Q Consensus 149 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~ 178 (206)
++. ..........+|.++..+|++++|+..
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 443 122366778899999999999999444
No 139
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=6.3e-15 Score=118.51 Aligned_cols=166 Identities=13% Similarity=0.154 Sum_probs=131.9
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccC-------------------
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQ------------------- 62 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~------------------- 62 (206)
.|..+..+..+|.++...|++++|+.+|.+++.+. |. ......++..+|.++...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS-RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 56678889999999999999999999999999887 53 22346688899999999999
Q ss_pred -HHHHHHHHHHHhhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHHHH
Q psy1039 63 -NDKVIEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVT 129 (206)
Q Consensus 63 -~~~A~~~~~~al~l------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~ 129 (206)
+++|+..|.+++.+ .|....++..+|.++...|++++|...+++++.+.|.... +...++.++...+
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 99999999998877 3444668889999999999999999999999988776655 7778888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-C------CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 130 KRMQENEQLQNKVHNMFKYVFD-T------SAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+..++.. ++++++. . +........++.++...|++++|...+
T Consensus 242 ~~~~A~~--------~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 242 EFETASE--------YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp CHHHHHH--------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHH--------HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 7777443 5544443 1 122566778899999999999888887
No 140
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.58 E-value=6.1e-14 Score=113.04 Aligned_cols=161 Identities=14% Similarity=0.149 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC-------CH
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-------DP 81 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-------~~ 81 (206)
.++..|..++..|++++|+.+|++++.+.. ++.+..+.+++++|.++..+|++++|+.++++++.+.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 577899999999999999999999998751 233457889999999999999999999999999987543 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT------NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD---- 151 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 151 (206)
.++..+|.++..+|++++|...|++++.+.+. ...+...++.++...++..++.. +|++++.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~--------~~~~al~~~~~ 254 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE--------HFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHHHHh
Confidence 57889999999999999999999999997542 13567788888888888777544 4444443
Q ss_pred --CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 152 --TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.|........++.++...|++++|...+
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 284 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFI 284 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2444778889999999999999999888
No 141
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.58 E-value=1.8e-14 Score=110.00 Aligned_cols=107 Identities=23% Similarity=0.216 Sum_probs=96.5
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--- 76 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--- 76 (206)
.+|..+..+..+|.++...|++++|+.+|.+++.+.. |+.+....++.++|.++...|++++|+..|++++.+
T Consensus 80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3588899999999999999999999999999999820 222337889999999999999999999999999999
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 77 -----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 77 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
.|....++..+|.++...|++++|...+++++.+
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777889999999999999999999999999986
No 142
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=6.4e-15 Score=119.27 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=135.1
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---CcHHHHHHHHHHHHHHHHccC-----------------HH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE---ESHERATCLKNRAAVYLKQNQ-----------------ND 64 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p---~~~~~~~~~~~la~~~~~~~~-----------------~~ 64 (206)
.|..+..+..+|.++...|++++|+.+|.+++.+. + +.+....++.++|.++...|+ ++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA-RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 57788999999999999999999999999999984 2 122377889999999999999 99
Q ss_pred HHHHHHHHHhhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHHHHHHH
Q psy1039 65 KVIEDCSKSLEIV------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVTKRM 132 (206)
Q Consensus 65 ~A~~~~~~al~l~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~ 132 (206)
+|+.+|.+++.+. |....++..+|.++...|++++|...+++++.+.|.... +...++.++...++..
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 9999999998774 334568999999999999999999999999998876554 7788888888877777
Q ss_pred HHHHHHHHHHHHHHHHhcC-C------CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 133 QENEQLQNKVHNMFKYVFD-T------SAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
++.. +|++++. . .........++.++...|++++|...+
T Consensus 281 ~A~~--------~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 281 DAAE--------HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHH--------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7444 4444443 1 123567788999999999999998888
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.56 E-value=3.3e-14 Score=97.89 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
++..++.+|.+++..|+|++|+..|++++.++|+++.+++.+|.++..+|++++|+..+++++.++|+++.++..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
...++...+ ...|++++.
T Consensus 88 ~~~~~~~~A--------~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEA--------IANLQRAYS 105 (137)
T ss_dssp HHTTCHHHH--------HHHHHHHHH
T ss_pred HHHhhHHHH--------HHHHHHHHH
Confidence 999988874 446666665
No 144
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.56 E-value=1.2e-13 Score=92.70 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1039 27 TALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKH 106 (206)
Q Consensus 27 ~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 106 (206)
+|+..|+++++.+ |+ +..+++++|.++...|++++|+..|++++.++|++..+++.+|.++...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TD---NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5889999999999 98 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCC--hhHHHHHHHHHHHHHH
Q psy1039 107 IHRVEPTN--KAIQPVLSRLFAIVTK 130 (206)
Q Consensus 107 al~~~p~~--~~~~~~l~~~~~~~~~ 130 (206)
++.++|.+ ......+......++.
T Consensus 79 al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 79 GLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccHHHHHHHHHHHHHhcc
Confidence 99998854 4444455444444443
No 145
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.56 E-value=1.7e-14 Score=102.84 Aligned_cols=119 Identities=14% Similarity=0.077 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------------------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
.+..+..+|..++..|+|++|+..|++++.+ +|.+..+++++|.++..+|+|++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5778999999999999999999999999999 7777899999999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCh-hhhHHHHhhhhHhccc
Q psy1039 108 HRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM-DKRVTAVNNLVVLARE 172 (206)
Q Consensus 108 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 172 (206)
+.++|+++.++..++.++..+++... +...|++++. .|.+. .++..+..+.....+.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~--------A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDE--------AEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHH--------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888 5558888888 67776 5566666665555444
No 146
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=1.1e-13 Score=116.39 Aligned_cols=164 Identities=8% Similarity=-0.062 Sum_probs=140.8
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHH-HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERA-TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 82 (206)
..|++...|...|..+...|++++|...|+++++.. |. ++ .+|..+|.++.+.|++++|...|+++++..|....
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-cc---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 579999999999999999999999999999999998 87 43 58999999999999999999999999999999888
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC----h
Q psy1039 83 ALFRRCQA-YEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAP----M 156 (206)
Q Consensus 83 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~ 156 (206)
.+...|.+ +...|++++|...|+++++.+|+++.++..++.+....++..+ +..+|++++. .|.+ .
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~--------Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN--------TRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH--------HHHHHHHHHHSCCSCGGGCH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh--------HHHHHHHHHhccCCCHHHHH
Confidence 88877765 4469999999999999999999999999999998887777666 5668888887 3433 3
Q ss_pred hhhHHHHhhhhHhcccchhhHHH
Q psy1039 157 DKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
..+..........|+.+.+....
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 36777777777788877776655
No 147
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.54 E-value=1.5e-14 Score=102.71 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-------DPK-----ALFRRCQAYEAIGKFEEAYTDAKHIHRV--- 110 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--- 110 (206)
.+..+.++|..++..|+|++|+..|+++++++|+ +.. +|+++|.++..+|+|++|+.+|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4677899999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ----CCCChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy1039 111 ----EPTNKAIQ----PVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM 156 (206)
Q Consensus 111 ----~p~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (206)
+|++..++ .+.+.++..+++..+ +...|++++. .|.+.
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eE--------Al~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAE--------AMPEFKKVVEMIEERK 136 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHHHHCC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHH--------HHHHHHHHHhcCCCcH
Confidence 99999999 999999999999999 4458888877 44443
No 148
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.54 E-value=1.3e-13 Score=88.03 Aligned_cols=84 Identities=32% Similarity=0.478 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 86 (206)
.++..++.+|..++..|++++|+.+|+++++.. |+ +..+++++|.++...|++++|+..|++++.++|.++.++..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 445566666666666666666666666666666 65 55566666666666666666666666666666666666666
Q ss_pred HHHHHHHc
Q psy1039 87 RCQAYEAI 94 (206)
Q Consensus 87 la~~~~~~ 94 (206)
+|.++..+
T Consensus 83 l~~~~~~~ 90 (91)
T 1na3_A 83 LGNAKQKQ 90 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66665544
No 149
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=2.3e-14 Score=111.71 Aligned_cols=170 Identities=17% Similarity=0.144 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------ 80 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------ 80 (206)
+..+..+|.+++..|++++|+.++++++.+.. ++.+....++..+|.++...|++++|+..+++++.+.|..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 57888999999999999999999999888731 1223367788899999999999999999999998886643
Q ss_pred HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHHHHHHHH
Q psy1039 81 PKALFRRCQAYEAIGK--------------------FEEAYTDAKHIHRVE------PTNKAIQPVLSRLFAIVTKRMQE 134 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~ 134 (206)
..++..+|.++...|+ +++|...+++++.+. |....+...++.++...++...+
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3488889999999999 999999998888762 22345677777777777776664
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 135 NEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
..... .+........+.+.........+.++...|++++|...+
T Consensus 203 ~~~~~-~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 203 VIAHE-QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHH-HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 43111 112222222112223446777888888888888888777
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=4.5e-13 Score=89.04 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
.+..++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|...+++++..+|+++.+...++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN 165 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 165 (206)
...++... +..+|++++. .|.+...+..++.+
T Consensus 83 ~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEE--------AKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHH--------HHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHH--------HHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 98888777 5558888888 67777766665544
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.53 E-value=5.3e-13 Score=105.94 Aligned_cols=150 Identities=9% Similarity=0.062 Sum_probs=124.9
Q ss_pred cccchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHhhhCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-NDKVIEDCSKSLEIVP 78 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p 78 (206)
|..+|.+..+|+.++.++...| .+++++.++.++++.+ |. +..+|..++.+....|. ++++++++.+++..+|
T Consensus 101 L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-pr---Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p 176 (331)
T 3dss_A 101 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 176 (331)
T ss_dssp HHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred HHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence 5679999999999999999999 4999999999999999 98 89999999999999999 6999999999999999
Q ss_pred CCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy1039 79 DDPKALFRRCQAYEAI--------------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR---MQENEQLQNK 141 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~ 141 (206)
.|..+|..++.++..+ +.++++++++.+++.++|+|.+++..+..+....... ..........
T Consensus 177 ~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 177 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence 9999999999999988 5689999999999999999999998776665543100 0000012223
Q ss_pred HHHHHHHhcC-CCCC
Q psy1039 142 VHNMFKYVFD-TSAP 155 (206)
Q Consensus 142 ~~~~~~~~~~-~~~~ 155 (206)
....++.+++ .|++
T Consensus 257 el~~~~elle~~pd~ 271 (331)
T 3dss_A 257 ELESCKELQELEPEN 271 (331)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhhCccc
Confidence 5557777887 5554
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.52 E-value=5.7e-13 Score=89.33 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
....++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhc
Q psy1039 126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLA 170 (206)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (206)
...++... +..+|++++. .|.+...+..++.++...|
T Consensus 88 ~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDE--------AIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHH--------HHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88887777 4558888877 7888888888887776553
No 153
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.52 E-value=7.4e-14 Score=109.81 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-----
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----- 80 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----- 80 (206)
...+...|.++...|+|++|+.+|.+++++. +. ......++.++|.+|..+|++++|+.+|++++.+.+..
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH-ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4455566788888999999999999998886 42 22346688889999999999999999999998885432
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Q psy1039 81 -PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-T 152 (206)
Q Consensus 81 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 152 (206)
..++.++|.++.. |++++|+.+|++++.+.|.. ..++..++.++..+++..++.. +|++++. .
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~--------~~~~al~~~ 185 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA--------SLQKEKSMY 185 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHHH
Confidence 4578888999988 99999999999999887654 3566777888777777777443 5555554 1
Q ss_pred CC------ChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039 153 SA------PMDKRVTAVNNLVVLAREMSGAEMLLK 181 (206)
Q Consensus 153 ~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~ 181 (206)
+. ........+.++...|++++|...+-+
T Consensus 186 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 123556677778888888888777643
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.50 E-value=1.9e-13 Score=109.12 Aligned_cols=167 Identities=10% Similarity=-0.053 Sum_probs=141.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHhhhC
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-N-QNDKVIEDCSKSLEIV 77 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~-~-~~~~A~~~~~~al~l~ 77 (206)
+|..+|++..+|+.+|.++...| .+++++..+..++..+ |. +..+|..++.++..+ + ++++++..+.++++++
T Consensus 80 ~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PK---ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d 155 (349)
T 3q7a_A 80 IVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LK---SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD 155 (349)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CC---CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC
T ss_pred HHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC
Confidence 36789999999999999999999 5999999999999999 99 899999999999998 8 8999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1039 78 PDDPKALFRRCQAYEAIGKFE--------EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV 149 (206)
Q Consensus 78 p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (206)
|.|..+|..++.++..+|.++ ++++.+.++++.+|.|..++...+.+...++.... ..........+++++
T Consensus 156 pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~-~~~~~~eELe~~~~a 234 (349)
T 3q7a_A 156 PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET-SSRSLQDELIYILKS 234 (349)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC-CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHH
Confidence 999999999999999999988 99999999999999999999999999877654100 001111244577777
Q ss_pred cC-CCCChhhhHHHHhhhhHhccc
Q psy1039 150 FD-TSAPMDKRVTAVNNLVVLARE 172 (206)
Q Consensus 150 ~~-~~~~~~~~~~~~~~~~~~~~~ 172 (206)
+. .|.+...+.-....+...|+.
T Consensus 235 I~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 235 IHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHhCCCCHHHHHHHHHHHHhcCCC
Confidence 77 788888887777666666554
No 155
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.49 E-value=3.9e-13 Score=94.03 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=107.2
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD- 80 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~- 80 (206)
.+..+..+..+|..++..|++++|+.+|.+++.+. +. ......++..+|.++...|++++|+..+++++.+.+..
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 35667899999999999999999999999999987 53 22344689999999999999999999999999886543
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHHHHHHH
Q psy1039 81 -----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQEN 135 (206)
Q Consensus 81 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~ 135 (206)
..+++.+|.++...|++++|...+++++.+.+.. ..+...++.++...++..++.
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 149 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 149 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence 5689999999999999999999999999874432 345666777777777666633
No 156
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.49 E-value=4.1e-12 Score=98.96 Aligned_cols=172 Identities=13% Similarity=0.006 Sum_probs=132.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHH---HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD--- 80 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--- 80 (206)
.....+...+..++..|+|++|+..+++++... +..+.. ...+..+|.++...|++++|+..|++++.+.+..
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence 345566677899999999999999999999976 642211 3345568999999999999999999999875443
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1039 81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE-------PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF 150 (206)
Q Consensus 81 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
..++..+|.+|..+|++++|..+|++++... |....+..+++.++...++..++.. ++++++
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~--------~~~~al 223 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY--------QVNKAI 223 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH--------HHHHHH
Confidence 3479999999999999999999999999532 2224577888999988888887544 444444
Q ss_pred C-------CCCChhhhHHHHhhhhHhccc-chhhHHHHhcchHHHHHHHhc
Q psy1039 151 D-------TSAPMDKRVTAVNNLVVLARE-MSGAEMLLKSGVAKQINTLLK 193 (206)
Q Consensus 151 ~-------~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~ 193 (206)
. ..........+|.++..+|+. ++|...+ .+...+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~------~~Al~i~~ 268 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY------KKASFFFD 268 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHH------HHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHH------HHHHHHHH
Confidence 3 233367888999999999965 9999988 55555544
No 157
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.48 E-value=9.2e-14 Score=108.11 Aligned_cols=136 Identities=13% Similarity=0.074 Sum_probs=111.5
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+..+|+++..++.+|.++...|++++|+..|+++++++ |+ +..+++++|.++..+|++++|+..|+++++++|++.
T Consensus 31 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 31 ITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 45689999999999999999999999999999999999 98 899999999999999999999999999999998652
Q ss_pred -----HH--------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039 82 -----KA--------------------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (206)
Q Consensus 82 -----~~--------------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 130 (206)
.. ...++. +..|++++|++.++++++++|++......+..+....++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 184 (281)
T 2c2l_A 107 LNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184 (281)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHH
Confidence 11 111222 236899999999999999999988887777766655433
Q ss_pred -HHHHHHHHHHHHHHHHHHhcC
Q psy1039 131 -RMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 131 -~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..+ +..+|+++..
T Consensus 185 ~~~~--------a~~~f~~a~~ 198 (281)
T 2c2l_A 185 YMAD--------MDELFSQVDE 198 (281)
T ss_dssp HHHH--------HHHHHHHSSC
T ss_pred HHHH--------HHHHHHhhhc
Confidence 233 5567777765
No 158
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.48 E-value=9.4e-14 Score=90.60 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHH-HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERAT-CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~ 90 (206)
.+..|..++..|++++|+..|+++++.+ |+ +.. +++++|.++..+|++++|+..|+++++++|++..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTE-PV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR---- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHC-SS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH----
Confidence 3678889999999999999999999999 88 778 89999999999999999999999999999999887754
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039 91 YEAIGKFEEAYTDAKHIHRVEPTNKA 116 (206)
Q Consensus 91 ~~~~g~~~~A~~~~~~al~~~p~~~~ 116 (206)
+.+.++...|++++..+|+++.
T Consensus 75 ----~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 ----KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp ----HHHHHHHHHHCCTTHHHHCCSS
T ss_pred ----HHHHHHHHHHHHHhccCccccc
Confidence 6778888888888888887653
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.48 E-value=1e-13 Score=91.50 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLSR 123 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 123 (206)
+...+..+|.++...|++++|+..|+++++++|.+..+++.+|.++...|++++|...+++++..+|+ +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 124 LFAIV-TKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 124 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
++... ++..+ +..+++++..
T Consensus 85 ~~~~~~~~~~~--------A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVE--------AEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHH--------HHHHHHHHGG
T ss_pred HHHHHhCCHHH--------HHHHHHHHhh
Confidence 99988 88777 4458888877
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=3e-14 Score=118.88 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=98.8
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+..+|+++..++.+|.++...|++++|+..|+++++++ |+ ++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus 33 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 33 IELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KK---YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 56789999999999999999999999999999999999 98 899999999999999999999999999999999999
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCC
Q psy1039 82 KALFRRCQA--YEAIGKFEEAYTDAK-----------HIHRVEPTN 114 (206)
Q Consensus 82 ~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 114 (206)
.++..++.+ +...|++++|+..++ +++.++|+.
T Consensus 109 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 109 DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999999988 899999999999999 888888865
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.47 E-value=2.7e-13 Score=99.15 Aligned_cols=129 Identities=9% Similarity=0.036 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---CCCC-
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---VPDD- 80 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---~p~~- 80 (206)
..+..+..+|..+...|++++|+.+|++++.+.. +..+....++.++|.++...|++++|+..+++++.+ .|++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 6788999999999999999999999999999541 122337889999999999999999999999999988 4433
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--Ch----hHHHHHHHHHHHHHHHHHHH
Q psy1039 81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NK----AIQPVLSRLFAIVTKRMQEN 135 (206)
Q Consensus 81 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~~~~~~~~~~~~ 135 (206)
..+++.+|.++...|++++|...+++++.+.+. ++ .+...++.++...++..++.
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 167 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ 167 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 567899999999999999999999999986432 22 23467777777777766643
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=8.2e-13 Score=91.61 Aligned_cols=113 Identities=9% Similarity=-0.005 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 122 (206)
....++.+|.+++..|++++|+..|++++.++|++ ..+++.+|.++...|++++|+..+++++..+|+++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 68889999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhh
Q psy1039 123 RLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL 166 (206)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 166 (206)
.++...++... +..+|++++. .|.+...+..++.+.
T Consensus 107 ~~~~~~~~~~~--------A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQ--------AVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHH--------HHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHH--------HHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999888887 4558888887 677777766655543
No 163
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.47 E-value=9.5e-13 Score=83.98 Aligned_cols=83 Identities=25% Similarity=0.345 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
....++.+|.++...|++++|+..|++++.++|+++.+++.+|.++...|++++|...+++++.++|+++.+...++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHH
Q psy1039 126 AIV 128 (206)
Q Consensus 126 ~~~ 128 (206)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 164
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.4e-12 Score=86.25 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQP 119 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 119 (206)
++..+..+|.+++..|++++|+..|++++.++|.++.+++++|.++..+|++++|+..+++++.++|++ ..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999999999999999999998 55555
Q ss_pred HHHHHHHHHH
Q psy1039 120 VLSRLFAIVT 129 (206)
Q Consensus 120 ~l~~~~~~~~ 129 (206)
.++.++..++
T Consensus 83 ~~~~~~~~~~ 92 (111)
T 2l6j_A 83 RLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.46 E-value=1.5e-12 Score=88.57 Aligned_cols=106 Identities=20% Similarity=0.117 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHH
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPVLS 122 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~ 122 (206)
.++.+|.+++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+...++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 478899999999999999999999999999998 899999999999999999999999999999999 78899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHH
Q psy1039 123 RLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA 162 (206)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 162 (206)
.++...++... +..+|++++. .|.+.......
T Consensus 84 ~~~~~~g~~~~--------A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 84 LSQYGEGKNTE--------AQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHTTCHHH--------HHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHcCCHHH--------HHHHHHHHHHHCCCChHHHHHH
Confidence 99998888877 4458888777 56655544433
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.46 E-value=2.8e-13 Score=91.38 Aligned_cols=80 Identities=14% Similarity=0.046 Sum_probs=75.2
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
+|+++.+++.+|.+++..|++++|+.+|+++++++ |+ ++.+++++|.++..+|++++|+..|++++...|+++...
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PN---HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 69999999999999999999999999999999999 99 899999999999999999999999999999999998765
Q ss_pred HHHH
Q psy1039 85 FRRC 88 (206)
Q Consensus 85 ~~la 88 (206)
....
T Consensus 99 ~~~~ 102 (117)
T 3k9i_A 99 SYKQ 102 (117)
T ss_dssp HTHH
T ss_pred HHHH
Confidence 4433
No 167
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.46 E-value=3.6e-13 Score=105.87 Aligned_cols=135 Identities=9% Similarity=0.056 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD--- 80 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--- 80 (206)
..+..+.++|.++...|++++|+.+|++++++. +. ....+.++.++|.+|.. |++++|+.+|++++.+.|..
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY-VENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 457789999999999999999999999999986 42 22346789999999998 99999999999999998754
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 81 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..++.++|.++..+|+|++|+..|++++.+.|++.. +...++.++...++... +..+|++++.
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~--------A~~~~~~al~ 223 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA--------AQKCVRESYS 223 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH--------HHHHHHHHhC
Confidence 578999999999999999999999999998776542 44555556555566666 4457777763
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.45 E-value=7e-13 Score=89.73 Aligned_cols=118 Identities=12% Similarity=0.102 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hhHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN-------KAIQ 118 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 118 (206)
.+..++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|...+++++...|++ ..+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999999999999999999877 7788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcc
Q psy1039 119 PVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAR 171 (206)
Q Consensus 119 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (206)
..++.++...++... +..+|++++..+.+......++.+....++
T Consensus 83 ~~la~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 83 ARIGNSYFKEEKYKD--------AIHFYNKSLAEHRTPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHTTCHHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHH--------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 888888888887777 455888887732356666666666555443
No 169
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=6.3e-13 Score=113.08 Aligned_cols=124 Identities=9% Similarity=0.071 Sum_probs=116.8
Q ss_pred cccchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhhCC
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVP 78 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p 78 (206)
+..+|++..+|+.+|.++...| +|+++++++.++++.+ |. +..+|..++.+....| .++++++++.++++.+|
T Consensus 100 l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~---N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (567)
T ss_dssp HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred HHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cc---cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence 5678999999999999999999 7899999999999999 99 8999999999999999 99999999999999999
Q ss_pred CCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 79 DDPKALFRRCQAYEAI--------------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
.+..+|+.+|.++..+ +.++++++++.+++.++|++..++..++.+....+
T Consensus 176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 9999999999999986 66899999999999999999999999988876544
No 170
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.44 E-value=9.9e-13 Score=98.05 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=113.7
Q ss_pred chhhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhh
Q psy1039 5 NMNDYNKLKESGNSAFKQG----DYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g----~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l 76 (206)
.+.++.+++.+|..|.. | ++++|+.+|+++++.. ++.+++++|.+|.. .+++.+|+.+|+++++.
T Consensus 46 ~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 46 AQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 34678899999999998 7 9999999999998765 68899999999988 88999999999999999
Q ss_pred CC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q psy1039 77 VP--DDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT------KRMQENEQLQNKVHN 144 (206)
Q Consensus 77 ~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~ 144 (206)
.| .++.+++.+|.+|.. .+++++|+..|+++.+. |.++.+...++.++..-. +..+ +..
T Consensus 119 ~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~--------A~~ 189 (212)
T 3rjv_A 119 SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQK--------ALH 189 (212)
T ss_dssp TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHH--------HHH
T ss_pred CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHH--------HHH
Confidence 98 469999999999999 89999999999999998 788889999999886532 3344 555
Q ss_pred HHHHhcC
Q psy1039 145 MFKYVFD 151 (206)
Q Consensus 145 ~~~~~~~ 151 (206)
+|+++.+
T Consensus 190 ~~~~A~~ 196 (212)
T 3rjv_A 190 WLNVSCL 196 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887776
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.44 E-value=1.8e-12 Score=94.67 Aligned_cols=148 Identities=11% Similarity=-0.020 Sum_probs=113.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh------hCCCCHHHHHHHHHHH
Q psy1039 19 AFKQGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE------IVPDDPKALFRRCQAY 91 (206)
Q Consensus 19 ~~~~g~~~~A~~~~~~al~~~~p-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~------l~p~~~~~~~~la~~~ 91 (206)
++..|++++|...++.... + | . ...++..+|.++...|++++|+..|++++. ..|....++..+|.++
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-H-PAT---ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp -----CHHHHHHHHHHHHT-S-TTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC-C-hHH---HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4678999999996655544 4 4 5 788999999999999999999999999998 4455678899999999
Q ss_pred HHcCCHHHHHHHHHHHHhc---CCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCChh
Q psy1039 92 EAIGKFEEAYTDAKHIHRV---EPTN----KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-------TSAPMD 157 (206)
Q Consensus 92 ~~~g~~~~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 157 (206)
...|++++|...+++++.+ .|++ ..+...++.++...++..++.. ++++++. ......
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~--------~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ--------EYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH--------HHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH--------HHHHHHHHHHhccchHHHHH
Confidence 9999999999999999998 4433 3557778888888887777544 4444432 112233
Q ss_pred hhHHHHhhhhHhcccchhhHHH
Q psy1039 158 KRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
....++.++...|++++|...+
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~ 170 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHW 170 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHH
Confidence 4578899999999999998887
No 172
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.43 E-value=5.1e-12 Score=98.44 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh---hhCCCCH-
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL---EIVPDDP- 81 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~l~p~~~- 81 (206)
...++.+|..+...|++++|+.+|++++... +. ......++.++|.+|...|++++|+.+|++++ +..|++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~ 193 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTC-CCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence 4556789999999999999999999999875 43 11246789999999999999999999999999 5566643
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHHHHHH
Q psy1039 82 ---KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQE 134 (206)
Q Consensus 82 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~ 134 (206)
.+++++|.++..+|+|++|..++++++.+.++. ..+...++.++..+++..++
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 689999999999999999999999999876431 56677888888887776664
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.42 E-value=5.8e-13 Score=107.69 Aligned_cols=126 Identities=10% Similarity=0.081 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLE----------------IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~----------------l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
.+..+..+|..++..|+|++|+..|+++++ ++|.+..+++++|.++..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 466789999999999999999999999998 7888899999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 110 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
++|++..++..++.++..+++..+ +...|++++. .|.+...+..++.++...++.+++....
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~e--------A~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~ 364 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQ--------ALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 364 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hCchhHHHHHHHHHHHHHccCHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888 5558888888 7889999999999999888887665543
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.42 E-value=1.5e-11 Score=98.09 Aligned_cols=165 Identities=10% Similarity=-0.050 Sum_probs=141.6
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhhCCCCH
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~ 81 (206)
.-.|+...++..........+..++|+.++.+++.++ |+ +..+|..++.++..+| .+++++..+++++..+|.+.
T Consensus 48 ~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny 123 (349)
T 3q7a_A 48 MYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMN-PA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY 123 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH
T ss_pred eeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-ch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH
Confidence 3456677778888888788888889999999999999 99 8999999999999999 59999999999999999999
Q ss_pred HHHHHHHHHHHHc-C-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039 82 KALFRRCQAYEAI-G-KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK 158 (206)
Q Consensus 82 ~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (206)
.+|+.++.++..+ + ++++++..+.+++..+|.|..++...+.+...++.........-.....++.+++. .|.+...
T Consensus 124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA 203 (349)
T 3q7a_A 124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA 203 (349)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999998 8 99999999999999999999999999999888876551101111124557788888 8999999
Q ss_pred hHHHHhhhhHhcc
Q psy1039 159 RVTAVNNLVVLAR 171 (206)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (206)
+...+.++...++
T Consensus 204 W~~R~~lL~~l~~ 216 (349)
T 3q7a_A 204 WGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHHTTSTT
T ss_pred HHHHHHHHHhccc
Confidence 9999999888876
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.42 E-value=1.4e-13 Score=109.99 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~ 89 (206)
..++++|.+++..|+|++|+.+|+++++++ |+ +..+++++|.+|..+|++++|+.+|+++++++|++..++..++.
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EK---NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 489999999999999999999999999999 98 89999999999999999999999999999999999999999998
Q ss_pred H-HHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039 90 A-YEAIGKFEEAYTDAKHIHRVEPTNKAI 117 (206)
Q Consensus 90 ~-~~~~g~~~~A~~~~~~al~~~p~~~~~ 117 (206)
+ ....+..+.+...|.+++...|+++..
T Consensus 307 l~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 307 LAEQEKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 8 555677888999999999999987653
No 176
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.41 E-value=2.5e-13 Score=96.29 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=71.7
Q ss_pred cccchhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc----------
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDY----------ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---------- 61 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~---------- 61 (206)
+..+|++++.|+++|.++...|++ ++|+..|+++++++ |+ ...+|+++|.+|..+|
T Consensus 29 i~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~---~~~A~~~LG~ay~~lg~l~P~~~~a~ 104 (158)
T 1zu2_A 29 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PK---KDEAVWCIGNAYTSFAFLTPDETEAK 104 (158)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cC---cHHHHHHHHHHHHHhcccCcchhhhh
Confidence 567999999999999999999876 59999999999999 99 8999999999999885
Q ss_pred -CHHHHHHHHHHHhhhCCCCHH
Q psy1039 62 -QNDKVIEDCSKSLEIVPDDPK 82 (206)
Q Consensus 62 -~~~~A~~~~~~al~l~p~~~~ 82 (206)
++++|+.+|++|++++|++..
T Consensus 105 g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHH
Confidence 899999999999999999853
No 177
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.41 E-value=4.9e-14 Score=109.25 Aligned_cols=181 Identities=9% Similarity=0.005 Sum_probs=150.0
Q ss_pred cccchhhHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhccccCc---HH---------------HHHHHHHHHHH
Q psy1039 2 IDNNMNDYNKLKES-------GNSAFKQGDYETALDFYTKALKVTAEES---HE---------------RATCLKNRAAV 56 (206)
Q Consensus 2 l~~~p~~~~~~~~~-------g~~~~~~g~~~~A~~~~~~al~~~~p~~---~~---------------~~~~~~~la~~ 56 (206)
+..+|..+++|..+ +.++...+++.+++..+++++.+. |.. .. ...++..++.+
T Consensus 33 ~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~-p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~ 111 (282)
T 4f3v_A 33 TNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS-MSTLNARIAIGGLYGDITYPVTSPLAITMGFAAC 111 (282)
T ss_dssp HHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC-GGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHH
T ss_pred HHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC-hhhhhhhhccCCcccccccccCCHhHHHHHHHHH
Confidence 46789999999999 999999999999999999999988 751 00 13456668899
Q ss_pred HHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C-hhHHHHHHHHHHHHHHHHHH
Q psy1039 57 YLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-N-KAIQPVLSRLFAIVTKRMQE 134 (206)
Q Consensus 57 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~-~~~~~~l~~~~~~~~~~~~~ 134 (206)
+...|+|++|.+.|..++..+|.+. +.+.+|.++...++|++|+..|+.+....+. . ..+...++.++..+++..+
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~e- 189 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTE- 189 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHH-
Confidence 9999999999999999999999988 9999999999999999999999988775322 1 3588999999999999888
Q ss_pred HHHHHHHHHHHHHHhcCC---CC-ChhhhHHHHhhhhHhcccchhhHHHH----hcchHHHHHHHhc
Q psy1039 135 NEQLQNKVHNMFKYVFDT---SA-PMDKRVTAVNNLVVLAREMSGAEMLL----KSGVAKQINTLLK 193 (206)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~ 193 (206)
+..+|+++... |. ........+.++..+|+.++|...+- .+|. ..+...+.
T Consensus 190 -------Al~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 190 -------AERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp -------HHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred -------HHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 55588888763 33 55688999999999999999988773 4566 66666665
No 178
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.41 E-value=2.1e-12 Score=84.79 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
++.+++.+|.+++..|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|++++.+.|.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 677888888888888888888888888888888888888888888888888888888888888876644
No 179
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.40 E-value=1.6e-11 Score=102.30 Aligned_cols=157 Identities=10% Similarity=0.005 Sum_probs=119.4
Q ss_pred chhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhh
Q psy1039 5 NMNDYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l 76 (206)
.+.++.+++.+|..|+. .+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+.+|+++...
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 45677888889988888 888999999999988765 46788888888888 88889999999888764
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy1039 77 VPDDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKY 148 (206)
Q Consensus 77 ~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 148 (206)
.++.+++.+|.+|.. .+++++|+..|+++... +++.+...++.++.. .++..+ +..+|++
T Consensus 109 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~--------A~~~~~~ 176 (490)
T 2xm6_A 109 --GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVM--------AREWYSK 176 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH--------HHHHHHH
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH--------HHHHHHH
Confidence 478888888888888 78888888888888764 577888888887764 333333 4456766
Q ss_pred hcCCCCChhhhHHHHhhhhH----hcccchhhHHHH
Q psy1039 149 VFDTSAPMDKRVTAVNNLVV----LAREMSGAEMLL 180 (206)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~ 180 (206)
+.+. .+......++.++.. .+++++|...+.
T Consensus 177 a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 177 AAEQ-GNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 6662 456677777777776 566666666653
No 180
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.39 E-value=1.9e-12 Score=100.86 Aligned_cols=123 Identities=13% Similarity=0.027 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-------CCCC
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-------VPDD 80 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-------~p~~ 80 (206)
.+..+|..+...|++++|+.+|++++.+. +. ......++.++|.+|..+|++++|+.+|+++++. .|..
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTC-CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 44468999999999999999999999965 32 1223557999999999999999999999999953 2233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHH-HHHH
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTK-RMQE 134 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~-~~~~ 134 (206)
..+++++|.++..+|+|++|+..+++++.+.+.. ..+...++.++..+++ ..++
T Consensus 196 ~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A 256 (293)
T 3u3w_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEI 256 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 5689999999999999999999999999987544 5778888888888874 3553
No 181
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.39 E-value=9.8e-12 Score=96.35 Aligned_cols=116 Identities=7% Similarity=-0.053 Sum_probs=90.6
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--CC-
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PD- 79 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p~- 79 (206)
..+|.+. ..+.+|..++..|+|++|+.+|+.++.. |++.....+++++|.++..+|++++|+.+|++++... |.
T Consensus 130 ~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~ 206 (282)
T 4f3v_A 130 VAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC 206 (282)
T ss_dssp CTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT
T ss_pred hcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc
Confidence 3567777 8888888888888888888888877664 3211124578888888888888888888888887554 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy1039 80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122 (206)
Q Consensus 80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 122 (206)
.+++++.+|.++..+|+.++|...|++++..+|+ +.+...|.
T Consensus 207 ~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 6678888888888888888888888888888888 76665553
No 182
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.38 E-value=1.8e-12 Score=85.08 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--CH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DP 81 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~ 81 (206)
.+|+++..++.+|.+++..|++++|+.+|+++++++ |+ +..+|+.+|.++..+|++++|+..|++++++.|. +.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 579999999999999999999999999999999999 98 8889999999999999999999999999998764 33
Q ss_pred HHHHHHHHHHH
Q psy1039 82 KALFRRCQAYE 92 (206)
Q Consensus 82 ~~~~~la~~~~ 92 (206)
.....+...+.
T Consensus 78 ~~~~~l~~~l~ 88 (100)
T 3ma5_A 78 KDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33333443333
No 183
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.36 E-value=1.2e-11 Score=102.34 Aligned_cols=153 Identities=12% Similarity=0.036 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHHhhhCCCC
Q psy1039 8 DYNKLKESGNSAFKQG---DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ----NQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~l~p~~ 80 (206)
++.+++.+|..+...| ++++|+.+|+++.+.+ |. .+..++++|.+|... +++++|+.+|+++. |.+
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~---~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~ 247 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TV---TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY 247 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CS---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CH---HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC
Confidence 3448899999999999 9999999999999998 76 677778899998665 68999999999987 888
Q ss_pred HHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCC
Q psy1039 81 PKALFRRCQA-Y--EAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT-----KRMQENEQLQNKVHNMFKYVFDT 152 (206)
Q Consensus 81 ~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
+.+++++|.+ + ...+++++|+..|+++.. ++++.+...++.++. .+ +..+ +..+|+++.
T Consensus 248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~~~d~~~--------A~~~~~~Aa-- 314 (452)
T 3e4b_A 248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY-EGKWVPADAKA--------AEAHFEKAV-- 314 (452)
T ss_dssp THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSSCCCHHH--------HHHHHHTTT--
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCCCCHHH--------HHHHHHHHh--
Confidence 9999999988 4 578899999999998875 458888888888876 33 3344 555888887
Q ss_pred CCChhhhHHHHhhhhH----hcccchhhHHHH
Q psy1039 153 SAPMDKRVTAVNNLVV----LAREMSGAEMLL 180 (206)
Q Consensus 153 ~~~~~~~~~~~~~~~~----~~~~~~a~~~~~ 180 (206)
+.+......++.+|.. ..++++|..++.
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 7777777888877765 124456666553
No 184
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.35 E-value=4.9e-11 Score=99.29 Aligned_cols=111 Identities=14% Similarity=0.032 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhCC
Q psy1039 7 NDYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVP 78 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p 78 (206)
.++.+++.+|..|.. .+++++|+.+|+++.+.+ ++.+++++|.+|.. .+++++|+.+|+++...
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 144 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-- 144 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 456677778888877 778888888888877754 45667777777777 67777777777777654
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 79 DDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 79 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
.++.+++.+|.+|.. .+++++|+..|+++.+. +++.+...++.++..
T Consensus 145 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 145 GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSR 195 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Confidence 467777777777776 67777777777777764 466777777776654
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.34 E-value=7.3e-11 Score=98.58 Aligned_cols=126 Identities=10% Similarity=0.007 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-----CCCC-
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----VPDD- 80 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~~- 80 (206)
.....+..+...|+|++|+.+|++++.+.. |+++.....+.++|.+|..+|+|++|+..+++++.+ .|++
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 344556667889999999999999998642 556778999999999999999999999999999966 4555
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCChhHHHH---HHHHHHHHHHHHHHHH
Q psy1039 81 --PKALFRRCQAYEAIGKFEEAYTDAKHIHR-----VEPTNKAIQPV---LSRLFAIVTKRMQENE 136 (206)
Q Consensus 81 --~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~---l~~~~~~~~~~~~~~~ 136 (206)
...+.++|.+|..+|++++|...|+++++ +.|+||.+... +..++..++..+++..
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999998 47888876654 4444445555555333
No 186
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.34 E-value=4e-12 Score=85.16 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=78.1
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-- 79 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-- 79 (206)
+..+|+++..++.+|.+++..|++++|+.+|++++.++ |+ ....++++|.++...|++++|+..|++++.++|.
T Consensus 12 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 12 LAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PT---YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp HTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 56789999999999999999999999999999999999 98 7899999999999999999999999999999884
Q ss_pred CHHHHHHHHHHHHHcC
Q psy1039 80 DPKALFRRCQAYEAIG 95 (206)
Q Consensus 80 ~~~~~~~la~~~~~~g 95 (206)
+..+...+...+..++
T Consensus 88 ~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 88 DQQVVKELQVFLRRLA 103 (115)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhc
Confidence 4444444544444443
No 187
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=2.6e-11 Score=97.01 Aligned_cols=163 Identities=9% Similarity=0.040 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH----
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---- 81 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---- 81 (206)
.+......|..++..|++++|+..+++++... |.. .....++..+|.++...|++++|...+++++.+.|...
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 46778889999999999999999999999988 642 12344788899999999999999999999998866432
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 82 --KALFRRCQAYEAIGKFEEAYTDAKHIHRVEP--------TNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 82 --~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
.++..+|.++...|++++|...+++++.+.+ ....+...++.++...++...+. .++++++.
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--------~~~~~al~ 163 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE--------ASARSGIE 163 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH--------HHHHHHHH
Confidence 3478899999999999999999999998753 23345666788887777777744 46666554
Q ss_pred -CCC-----ChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 152 -TSA-----PMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 152 -~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.+. .......++.++...|++++|...+
T Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 197 (373)
T 1hz4_A 164 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL 197 (373)
T ss_dssp HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 221 2345667889999999999998877
No 188
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.29 E-value=5.1e-11 Score=77.34 Aligned_cols=70 Identities=16% Similarity=0.291 Sum_probs=66.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK-ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 119 (206)
.+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|+..|++++.++|+++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 357899999999999999999999999999999 9999999999999999999999999999999998873
No 189
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=3e-10 Score=90.81 Aligned_cols=162 Identities=13% Similarity=0.066 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--------
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-------- 77 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-------- 77 (206)
...+..+|..+...|++++|+..+.+++.+. |. ......++.++|.++...|++++|+..|++++.+.
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 131 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMA-RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 3478899999999999999999999999986 53 12235567899999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039 78 PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN-----KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD- 151 (206)
Q Consensus 78 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (206)
|....++..+|.++...|++++|...+++++.+.|.. ..+...++.++...++..++.. +++++..
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--------~l~~a~~~ 203 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS--------QLNRLENL 203 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH--------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHH
Confidence 3345678889999999999999999999999988763 2356667777777777766443 5555443
Q ss_pred --CCCC-hhhhH----HHHhhhhHhcccchhhHHH
Q psy1039 152 --TSAP-MDKRV----TAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 152 --~~~~-~~~~~----~~~~~~~~~~~~~~a~~~~ 179 (206)
.+.. ..... ..+..+...|++++|...+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 238 (373)
T 1hz4_A 204 LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 238 (373)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1111 11111 2334466788887776665
No 190
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.26 E-value=5.6e-10 Score=87.56 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=118.7
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC----
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---- 79 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---- 79 (206)
+.....+..+|.++...|++++|++++.+++..+ | + +..++..++.++.++|+.+.|...++++.+.+|+
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~-~~~~---~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~ 172 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDND-EAEG---TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG 172 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS-CSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCcC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc
Confidence 3445667899999999999999999999999988 7 6 8999999999999999999999999999999993
Q ss_pred CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Q psy1039 80 DPKALFRR--CQAYEAIG--KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD---- 151 (206)
Q Consensus 80 ~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 151 (206)
+-.....+ |.+....| ++.+|...|+.+....|+.......+. ++..+++..++.. .++.+..
T Consensus 173 ~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~--------~L~~l~~~~p~ 243 (310)
T 3mv2_B 173 DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG--------IVELLLSDYYS 243 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH--------HHHHHHSHHHH
T ss_pred chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH--------HHHHHHHhccc
Confidence 23344444 55577667 999999999999888886223223333 6777787777554 4444333
Q ss_pred -------CCCChhhhHHHHhhhhHhcc
Q psy1039 152 -------TSAPMDKRVTAVNNLVVLAR 171 (206)
Q Consensus 152 -------~~~~~~~~~~~~~~~~~~~~ 171 (206)
.|.+.......+.+...+|+
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 26777887777777777786
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.25 E-value=6e-11 Score=82.68 Aligned_cols=104 Identities=22% Similarity=0.310 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC------
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD------ 79 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~------ 79 (206)
+..+..+|.++...|++++|+.+|++++.+. +. ......++.++|.++...|++++|+..+++++.+.+.
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 127 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 127 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence 4689999999999999999999999999986 42 2334778999999999999999999999999977432
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
...++..+|.++...|++++|...+++++.+...
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2567899999999999999999999999987543
No 192
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.18 E-value=1.2e-09 Score=99.51 Aligned_cols=132 Identities=11% Similarity=0.073 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC-------------------------CCHHHHHHHHHHHHHcCCHHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP-------------------------DDPKALFRRCQAYEAIGKFEEAY 101 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p-------------------------~~~~~~~~la~~~~~~g~~~~A~ 101 (206)
+..|..+|.++.++|++++|++.++++....+ .+++.+..++..|...|.|++|+
T Consensus 1221 A~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1221 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHH
Confidence 34577888888888888888888888854443 13444556777889999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-----CChhhhHHHHhhhhHhcccchh
Q psy1039 102 TDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS-----APMDKRVTAVNNLVVLAREMSG 175 (206)
Q Consensus 102 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~a 175 (206)
..+++++.++|.|..+...++.++...+-..-.+ .++ +|..... ++ .+...|..+...|.+.|.++.|
T Consensus 1301 ~LlE~aL~LeraH~gmftELaiLyaKy~peklmE-----hlk-~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1301 TMLEAALGLERAHMGMFTELAILYSKFKPQKMRE-----HLE-LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHH-----HHH-HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999999999999988887654332222 233 4444444 44 6788899999999999999999
Q ss_pred hHHHHhcch
Q psy1039 176 AEMLLKSGV 184 (206)
Q Consensus 176 ~~~~~~~~~ 184 (206)
+.-++.-+.
T Consensus 1375 ~~tm~~h~~ 1383 (1630)
T 1xi4_A 1375 IITMMNHPT 1383 (1630)
T ss_pred HHHHHhccH
Confidence 976666543
No 193
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.18 E-value=4.8e-10 Score=92.29 Aligned_cols=108 Identities=7% Similarity=-0.011 Sum_probs=90.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-----CCCC---HHH
Q psy1039 16 GNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----VPDD---PKA 83 (206)
Q Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~~---~~~ 83 (206)
+......|+|++|+.+|++++.+.. |+++.....+.++|.+|..+|+|++|+..+++++.+ .|++ ...
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 4444467899999999999998532 666778899999999999999999999999999966 3444 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhHHHHHHH
Q psy1039 84 LFRRCQAYEAIGKFEEAYTDAKHIHRV-----EPTNKAIQPVLSR 123 (206)
Q Consensus 84 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~ 123 (206)
++++|.+|..+|++++|...|++++++ .|+||.+......
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~ 429 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE 429 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 999999999999999999999999984 7888877665443
No 194
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.17 E-value=1.4e-09 Score=89.46 Aligned_cols=117 Identities=8% Similarity=0.054 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-----CCCC
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----VPDD 80 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~~ 80 (206)
.........+...|+|++|+..|++++.... |+++.....+.++|.+|..+|+|++|+.++++++.+ .|++
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 3444555667789999999999999998542 566778899999999999999999999999999966 3455
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhHHHHHHHHHH
Q psy1039 81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRV-----EPTNKAIQPVLSRLFA 126 (206)
Q Consensus 81 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~ 126 (206)
...++++|.+|..+|++++|...+++++++ .|+||.+...+..+..
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~ 421 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE 421 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 456999999999999999999999999984 7899888766554443
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.17 E-value=6.8e-10 Score=71.93 Aligned_cols=72 Identities=19% Similarity=0.094 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039 46 RATCLKNRAAVYLKQNQ---NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 117 (206)
++..+..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+..|+++++.+|.++..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 78899999999987766 7999999999999999999999999999999999999999999999999995544
No 196
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.17 E-value=4.3e-10 Score=78.86 Aligned_cols=100 Identities=10% Similarity=0.027 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhhC-C-CCHHHHHHHHHHHHHcCCHHH
Q psy1039 25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIV-P-DDPKALFRRCQAYEAIGKFEE 99 (206)
Q Consensus 25 ~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~~~~~la~~~~~~g~~~~ 99 (206)
...+.+.|...+..+ |. +..+.+++|.|+.+.+ ++.+++..++.+++.+ | ++.+++|.+|..++++|+|++
T Consensus 14 l~~~~~~y~~e~~~~-~~---~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SV---SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTT-CC---CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccC-CC---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 455677788888877 76 7899999999999988 6779999999999998 7 679999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039 100 AYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (206)
Q Consensus 100 A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 128 (206)
|.++++++++++|+|..+......+...+
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988776665544
No 197
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.16 E-value=4.2e-10 Score=93.08 Aligned_cols=156 Identities=13% Similarity=0.055 Sum_probs=124.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHH----HHHHHHHhccccCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhhCC
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETAL----DFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVP 78 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~----~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~p 78 (206)
+.++.+++.+|..+...+.+++++ .++..+...+ | .+++++|.+|...| ++.+|+.+|+++....|
T Consensus 138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~-~------~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~ 210 (452)
T 3e4b_A 138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT-D------ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT 210 (452)
T ss_dssp HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC-T------THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC-H------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC
Confidence 345678889999999988554444 4455554444 4 37899999999999 99999999999999999
Q ss_pred CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 79 DDPKALFRRCQAYEAI----GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA---IVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
.....++++|.+|... +++++|+..|+++. |+++.+...++.++. ..++..+ +..+|+++.+
T Consensus 211 ~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~--------A~~~~~~Aa~ 279 (452)
T 3e4b_A 211 VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQ--------MMKYLDNGRA 279 (452)
T ss_dssp SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHH
Confidence 9999999999999776 79999999999998 999999999999843 2333333 6668888886
Q ss_pred CCCChhhhHHHHhhhhHhc-----ccchhhHHHHh
Q psy1039 152 TSAPMDKRVTAVNNLVVLA-----REMSGAEMLLK 181 (206)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~-----~~~~a~~~~~~ 181 (206)
..+......++.+|. .| ++++|..++.+
T Consensus 280 -~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 280 -ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp -TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 557888888998887 55 66777776643
No 198
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.14 E-value=9.5e-10 Score=72.63 Aligned_cols=79 Identities=22% Similarity=0.235 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE----SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
+...+.+|..++..|+|..|+.+|+.|++.. +. ......++..+|.|++++|+++.|+..++++++++|++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~-~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQL-DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhh-hccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4455677777777777777777777777653 11 011455666666666666666666666666666666666665
Q ss_pred HHHH
Q psy1039 85 FRRC 88 (206)
Q Consensus 85 ~~la 88 (206)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5554
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.11 E-value=1.3e-09 Score=71.89 Aligned_cols=81 Identities=14% Similarity=0.019 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 118 (206)
++.-++.+|..++..|+|..|+.+|++|++.. +....++..+|.++..+|+++.|...+++++.++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45668899999999999999999999999863 34578899999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q psy1039 119 PVLSRLFA 126 (206)
Q Consensus 119 ~~l~~~~~ 126 (206)
.++..+..
T Consensus 84 ~n~~~~~~ 91 (104)
T 2v5f_A 84 GNLKYFEY 91 (104)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 88764443
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.9e-09 Score=87.63 Aligned_cols=169 Identities=13% Similarity=0.087 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--------------HERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
|.+....|..+...|+|++|++.|.++++.. |.. .....++.++|.+|...|++++|++.+.+++
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456778999999999999999999999988 641 2244578899999999999999999999999
Q ss_pred hhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 75 EIVPDDPK------ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT------NKAIQPVLSRLFAIVTKRMQENEQLQNKV 142 (206)
Q Consensus 75 ~l~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 142 (206)
.+.+...+ +...+|.++...|+++.|+..+++++...+. ...+...++.++...++..++...+.. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~-~ 161 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND-L 161 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH-H
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH-H
Confidence 88766543 3455788888899999999999999886432 245777888888888888776552222 2
Q ss_pred HHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 143 HNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
........+.+.........+.++...|+++.|...+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL 198 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 2222222223455677888999999999999998887
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.09 E-value=1.4e-09 Score=75.52 Aligned_cols=97 Identities=12% Similarity=0.087 Sum_probs=79.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039 15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (206)
Q Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~la~~ 90 (206)
+|..|...+.+++|+.+|+++.+.. ++.+++++|.+|.. .+++++|+.+|+++.+. .++.+++++|.+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~ 102 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYK 102 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 8888888888888999999988876 57788889988888 78899999999888876 578888899988
Q ss_pred HHH----cCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039 91 YEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (206)
Q Consensus 91 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 121 (206)
|.. .+++++|...|+++.+. .++.+...+
T Consensus 103 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l 135 (138)
T 1klx_A 103 QYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL 135 (138)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred HHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 888 88899999999888876 444444443
No 202
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.08 E-value=8.3e-10 Score=90.37 Aligned_cols=155 Identities=12% Similarity=0.139 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC----------
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---------- 79 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---------- 79 (206)
..|..+|..++..|+|++|..+|.++ ++ |..+|.|+.++|+|++|++.|+++. +|.
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n-------~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv 188 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV-----SN-------FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 188 (449)
T ss_dssp --------------CTTTHHHHHHHT-----TC-------HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-----hh-------HHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHH
Confidence 48888888888888888888888864 22 6678888888888888888888872 221
Q ss_pred -----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 80 -----------------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKV 142 (206)
Q Consensus 80 -----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 142 (206)
+++-...+..+|...|++++|+..+++++.+++.+..+...++.++.+.+-..-.+ .
T Consensus 189 ~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~e------h 262 (449)
T 1b89_A 189 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMRE------H 262 (449)
T ss_dssp HTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHH------H
T ss_pred HcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHH------H
Confidence 11112234478999999999999999999999999999999988887654322211 2
Q ss_pred HHHHHHhcC-CC-----CChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039 143 HNMFKYVFD-TS-----APMDKRVTAVNNLVVLAREMSGAEMLLKSGV 184 (206)
Q Consensus 143 ~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 184 (206)
...|...+. ++ .+...|..+.-.|.+.++++.|+.-++.-|.
T Consensus 263 l~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~ 310 (449)
T 1b89_A 263 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT 310 (449)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCCh
Confidence 335555555 66 7889999999999999999999999997763
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.06 E-value=7.8e-10 Score=92.36 Aligned_cols=108 Identities=11% Similarity=0.053 Sum_probs=95.0
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--- 76 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--- 76 (206)
.+|..+..+.++|.+|...|+|++|+.++++++.+.. |+++..+..+.++|.+|..+|++++|+..|++|+.+
T Consensus 346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV 425 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999999998542 667779999999999999999999999999999966
Q ss_pred --CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1039 77 --VPDDP---KALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111 (206)
Q Consensus 77 --~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 111 (206)
.|+++ +....++.++..++.|++|...|.++.+..
T Consensus 426 ~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 426 THGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665 456788999999999999999999886543
No 204
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.97 E-value=6.4e-09 Score=84.47 Aligned_cols=174 Identities=9% Similarity=0.038 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC-----
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP----- 78 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p----- 78 (206)
....++..+|..|...|+|++|+++|.+++... +. ......+...+|.++...|++++|+..+++++...+
T Consensus 53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYM-MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 345678999999999999999999999999876 53 112345667788898899999999999999987633
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 79 -DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP------TNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 79 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
....++..+|.++...|+|++|...+++++.... ....+...++.++...++..++...+. ++........+
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~al~~~~~~~~ 210 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT-AARTAANSIYC 210 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHhhcCCC
Confidence 2367889999999999999999999999887522 224577778888888887777444111 12222222211
Q ss_pred C-CCChhhhHHHHhhhhHhcccchhhHHHHhc
Q psy1039 152 T-SAPMDKRVTAVNNLVVLAREMSGAEMLLKS 182 (206)
Q Consensus 152 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 182 (206)
+ .....+....+..+...+++++|.+.+...
T Consensus 211 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 211 PTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 112455666778888888888888777433
No 205
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.95 E-value=1.9e-08 Score=91.92 Aligned_cols=142 Identities=16% Similarity=0.207 Sum_probs=70.3
Q ss_pred HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1039 21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100 (206)
Q Consensus 21 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A 100 (206)
..|+|++|+++++++ + .+.+|+.+|.++...|++++|+..|.++ +++..|..+|.++.+.|+|++|
T Consensus 1088 ~i~nldrAiE~Aerv---n------~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC---N------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred HHhhHHHHHHHHHhc---C------CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHH
Confidence 445555555555432 1 3445555555555555555555555443 5555555555555555555555
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHhcCCCCChhhhH
Q psy1039 101 YTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQ--------------------LQNKVHNMFKYVFDTSAPMDKRV 160 (206)
Q Consensus 101 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 160 (206)
++.|..+....++ +.+...++.++.++++......- ....+..+|+++ ..+.
T Consensus 1154 IeyL~mArk~~~e-~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~ 1225 (1630)
T 1xi4_A 1154 VKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFG 1225 (1630)
T ss_pred HHHHHHHHhhccc-ccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHH
Confidence 5555555555422 11122233333222211110000 000133344443 3567
Q ss_pred HHHhhhhHhcccchhhHHHHhcch
Q psy1039 161 TAVNNLVVLAREMSGAEMLLKSGV 184 (206)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~~~~~~ 184 (206)
.++.++..+|++++|.+.+-+...
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHhCC
Confidence 777777777777777777755443
No 206
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.95 E-value=7e-09 Score=81.36 Aligned_cols=140 Identities=10% Similarity=0.041 Sum_probs=106.4
Q ss_pred HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1039 28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--DDPKALFRRCQAYEAIGKFEEAYTDAK 105 (206)
Q Consensus 28 A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~~~~~~~la~~~~~~g~~~~A~~~~~ 105 (206)
|+..+++.+... +. ....+..+|.++...|++++|+.++.+++..+| .+.+++...+.++..+|+.+.|.+.++
T Consensus 85 a~~~l~~l~~~~-~~---~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 NIEELENLLKDK-QN---SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp CCHHHHHTTTTS-CC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777888887765 44 345567899999999999999999999999997 889999999999999999999999999
Q ss_pred HHHhcCCC----ChhHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhH
Q psy1039 106 HIHRVEPT----NKAIQPVLSRLFA--IVT--KRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAE 177 (206)
Q Consensus 106 ~al~~~p~----~~~~~~~l~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 177 (206)
+..+.+|+ +..+...+..... ..+ +... +..+|+.+.+..++......+.++++.+|++++|-.
T Consensus 161 ~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~--------A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 161 NYTNAIEDTVSGDNEMILNLAESYIKFATNKETATS--------NFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTH--------HHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCccccccchHHHHHHHHHHHHHHhCCccHHH--------HHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHH
Confidence 99999984 3455555554433 323 2222 566888888844432222222228999999999888
Q ss_pred HH
Q psy1039 178 ML 179 (206)
Q Consensus 178 ~~ 179 (206)
.+
T Consensus 233 ~L 234 (310)
T 3mv2_B 233 IV 234 (310)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.94 E-value=3.9e-09 Score=68.29 Aligned_cols=73 Identities=11% Similarity=0.035 Sum_probs=68.3
Q ss_pred chhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 5 NMNDYNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+|++++.+..+|.+++..++ .++|...+++++.++ |+ +..+++.+|..++..|+|.+|+..++++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68899999999999987666 799999999999999 99 899999999999999999999999999999999843
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.94 E-value=8.3e-09 Score=71.54 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH----cCCHH
Q psy1039 23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA----IGKFE 98 (206)
Q Consensus 23 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~----~g~~~ 98 (206)
+++++|+.+|+++.+.. +. .+. +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~-----~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EM-----FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CT-----THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC-CH-----hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHH
Confidence 47899999999999987 43 223 999999999999999999999987 689999999999999 89999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039 99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKYVFD 151 (206)
Q Consensus 99 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
+|+..|+++.+. .++.+...++.++.. .++..+ +..+|+++.+
T Consensus 79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~--------A~~~~~~Aa~ 125 (138)
T 1klx_A 79 KAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ--------AVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHH--------HHHHHHHHHH
Confidence 999999999886 789999999999876 555555 5558888776
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.88 E-value=6e-08 Score=74.86 Aligned_cols=110 Identities=9% Similarity=0.034 Sum_probs=94.4
Q ss_pred ccchhhHHHHHHHHHHHHH-----cCC------HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc-----cCHHHH
Q psy1039 3 DNNMNDYNKLKESGNSAFK-----QGD------YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-----NQNDKV 66 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~-----~g~------~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~-----~~~~~A 66 (206)
..+|++++.++..|..... .|. ...|...++++++++ |+ .....+|..+|..|... |+.++|
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD-P~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA 223 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW-PS-YQEGAVWNVLTKFYAAAPESFGGGMEKA 223 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHHHSCTTTTCCHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC-CC-cccCHHHHHHHHHHHhCCCccCCCHHHH
Confidence 3578888888888877643 233 568889999999999 97 22466899999999996 999999
Q ss_pred HHHHHHHhhhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Q psy1039 67 IEDCSKSLEIVPDD-PKALFRRCQAYEA-IGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 67 ~~~~~~al~l~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~ 114 (206)
...|+++++++|+. ..+++..|..+.. .|++++|...+++++..+|..
T Consensus 224 ~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 224 HTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999975 9999999999988 499999999999999998875
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.80 E-value=9.9e-08 Score=76.32 Aligned_cols=136 Identities=10% Similarity=0.094 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCH-------HHHH-HHHH--HHh
Q psy1039 8 DYNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN-------DKVI-EDCS--KSL 74 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~-------~~A~-~~~~--~al 74 (206)
.+-.++..|..++..++ +.+|+.+|++|++++ |+ .+.++..++.||.....+ ..++ ..+. .++
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~---~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PE---FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 45677888998888765 478999999999999 99 888898888888632211 1111 1222 234
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Q psy1039 75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS 153 (206)
Q Consensus 75 ~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (206)
..+|.++.++..+|..+...|++++|...+++++.++|+ ...+..++.++...|+..+ +...|.+++. .|
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~e--------A~e~~~~AlrL~P 341 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNRE--------AADAYLTAFNLRP 341 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHSC
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHH--------HHHHHHHHHhcCC
Confidence 678999999999999999999999999999999999975 5666788888888888888 4458888888 55
Q ss_pred CCh
Q psy1039 154 APM 156 (206)
Q Consensus 154 ~~~ 156 (206)
...
T Consensus 342 ~~~ 344 (372)
T 3ly7_A 342 GAN 344 (372)
T ss_dssp SHH
T ss_pred CcC
Confidence 443
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=3.3e-08 Score=69.27 Aligned_cols=83 Identities=11% Similarity=0.035 Sum_probs=72.3
Q ss_pred cchhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039 4 NNMNDYNKLKESGNSAFKQG---DYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD 79 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~~p-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 79 (206)
.+|.+.++.++.|+.+.+.+ +.++++.+++..++.+.| + ..++++++|..++++|+|++|..+++++++++|+
T Consensus 27 ~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~---~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 27 AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE---QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc---hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 35678899999999999988 666999999999997623 3 6889999999999999999999999999999999
Q ss_pred CHHHHHHHHH
Q psy1039 80 DPKALFRRCQ 89 (206)
Q Consensus 80 ~~~~~~~la~ 89 (206)
|..+...+-.
T Consensus 104 n~QA~~Lk~~ 113 (152)
T 1pc2_A 104 NNQAKELERL 113 (152)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9887665443
No 212
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.79 E-value=2.8e-08 Score=86.02 Aligned_cols=105 Identities=7% Similarity=-0.034 Sum_probs=72.6
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETAL-DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---- 76 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~-~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---- 76 (206)
|...|..+..|+..+......|+.++|. ..|.+|+..+ |. +..+|...+......|+++.|...|++++..
T Consensus 336 L~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~---s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 336 AQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PN---SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777777776 7778887777 76 5666777777777777777777777777754
Q ss_pred -------CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 77 -------VPD-----------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 77 -------~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
.|. ...+|...+......|..+.|...|.+|+..
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 142 2345666666666666677777777777665
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.75 E-value=3.2e-08 Score=79.09 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=87.7
Q ss_pred CcccchhhHHHHHHHHHHHHHcCC-------HHHHHH-HHHH--HHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy1039 1 MIDNNMNDYNKLKESGNSAFKQGD-------YETALD-FYTK--ALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70 (206)
Q Consensus 1 al~~~p~~~~~~~~~g~~~~~~g~-------~~~A~~-~~~~--al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 70 (206)
|+..+|+++.++..++.++..... ...++. .+.. ++..+ |. .+.++..+|..+...|++++|+..+
T Consensus 225 Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~-~~---~a~~~~alal~~l~~gd~d~A~~~l 300 (372)
T 3ly7_A 225 IVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPEL-NN---LSIIYQIKAVSALVKGKTDESYQAI 300 (372)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGG-TT---CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccC-Cc---CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 467899999999998888863211 112221 1222 23455 66 7888989999999999999999999
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115 (206)
Q Consensus 71 ~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 115 (206)
++++.++| ++.+|..+|.++...|++++|.+.|++|+.++|..+
T Consensus 301 ~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 301 NTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 99999997 477889999999999999999999999999999875
No 214
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.73 E-value=3.8e-07 Score=79.00 Aligned_cols=170 Identities=8% Similarity=-0.118 Sum_probs=131.5
Q ss_pred cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----------ccC--------cHHHHHHHHHHHHHHHHccCH
Q psy1039 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVT----------AEE--------SHERATCLKNRAAVYLKQNQN 63 (206)
Q Consensus 2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------~p~--------~~~~~~~~~~la~~~~~~~~~ 63 (206)
+...|.+...|...+......|+++.|...|++++... .|. +.....+|...+....+.|..
T Consensus 371 i~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 371 QQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 34568888889999999999999999999999999852 021 001345788888888889999
Q ss_pred HHHHHHHHHHhhh-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039 64 DKVIEDCSKSLEI-VPDDPKALFRRCQAYEAIGK-FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNK 141 (206)
Q Consensus 64 ~~A~~~~~~al~l-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 141 (206)
+.|...|.+|++. .+.....|...|.+-...++ ++.|.+.|+++++..|+++..+..........++...
T Consensus 451 ~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~-------- 522 (679)
T 4e6h_A 451 AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ-------- 522 (679)
T ss_dssp HHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH--------
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH--------
Confidence 9999999999988 55567888888887777654 8999999999999999999998777776666555444
Q ss_pred HHHHHHHhcC-CC---CChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 142 VHNMFKYVFD-TS---APMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 142 ~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
+..+|++++. .+ .....+......-...|..+.+.+..
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7779999998 34 23456666666666777776655555
No 215
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.73 E-value=2.2e-07 Score=62.85 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHH---HHHHHHHHhhhC-C-CCHHHHHHHHHHHHHcCCHH
Q psy1039 24 DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK---VIEDCSKSLEIV-P-DDPKALFRRCQAYEAIGKFE 98 (206)
Q Consensus 24 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~~~~~la~~~~~~g~~~ 98 (206)
....+...|...+..+ +. +....|++|-++.+...... ++..++..+.-+ | ...+++|.+|..++++|+|+
T Consensus 16 ~l~~~~~~y~~e~~~~-~~---s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SV---SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CC---CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccC-CC---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 3455666788887766 55 68899999999999887776 999999999887 5 57889999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039 99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (206)
Q Consensus 99 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 129 (206)
.|..+++.+++.+|+|..+......+...+.
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKELERLIDKAMK 122 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999877766655443
No 216
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.72 E-value=1.2e-07 Score=77.66 Aligned_cols=103 Identities=8% Similarity=-0.025 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l 87 (206)
++.....++..|.+.|++.++.+++. . |+ ...|.++|.+++..|+|++|..+|.++ ..|..+
T Consensus 93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~-pn----~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~L 154 (449)
T 1b89_A 93 ESYVETELIFALAKTNRLAELEEFIN-----G-PN----NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRL 154 (449)
T ss_dssp ----------------CHHHHTTTTT-----C-C--------------------CTTTHHHHHHHT--------TCHHHH
T ss_pred cchhHHHHHHHHHHhCCHHHHHHHHc-----C-Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHH
Confidence 35667788999999999999887774 3 65 458999999999999999999999987 478899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 133 (206)
|.++.++|+|++|++.++++ +++..+..........++...
T Consensus 155 A~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHH
Confidence 99999999999999999999 467777776666666665444
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.61 E-value=3e-07 Score=75.62 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=71.0
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--- 76 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--- 76 (206)
.+|..+..+.++|.+|...|+|++|+.+|++++.+.. |+++..+..+.++|.+|..+|++++|+..|++|+++
T Consensus 335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999999998543 667778999999999999999999999999999876
Q ss_pred --CCCCHHH
Q psy1039 77 --VPDDPKA 83 (206)
Q Consensus 77 --~p~~~~~ 83 (206)
.|+++.+
T Consensus 415 ~lG~~Hp~~ 423 (433)
T 3qww_A 415 AHGKDHPYI 423 (433)
T ss_dssp HTCTTCHHH
T ss_pred HcCCCChHH
Confidence 5777654
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.57 E-value=2.6e-07 Score=75.91 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=74.9
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--- 76 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--- 76 (206)
.+|..+..+.++|.+|...|+|++|+.++++++.+.. |+++..+..+.++|.+|..+|++++|+..|++|+++
T Consensus 324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999998542 567778999999999999999999999999999866
Q ss_pred --CCCCHHH---HHHHHHHHH
Q psy1039 77 --VPDDPKA---LFRRCQAYE 92 (206)
Q Consensus 77 --~p~~~~~---~~~la~~~~ 92 (206)
.|+++.+ +.+++.+..
T Consensus 404 ~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 404 THGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HTCTTSHHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHH
Confidence 5666543 444555544
No 219
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.31 E-value=1.3e-05 Score=54.36 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQ---NDKVIEDCSKSLEIVPD-DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 121 (206)
+....++.|-++.+... ..+++..++..++.+|. ..+++|.+|..++++|+|.+|.++.+.+++.+|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 47788999999988875 45799999999998984 588999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHH
Q psy1039 122 SRLFAIVTKR 131 (206)
Q Consensus 122 ~~~~~~~~~~ 131 (206)
..+...+.+.
T Consensus 119 ~~Ie~ki~kd 128 (134)
T 3o48_A 119 SMVEDKIQKE 128 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7776666543
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.29 E-value=8.7e-06 Score=57.48 Aligned_cols=116 Identities=10% Similarity=0.134 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC------
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV------ 77 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~------ 77 (206)
...++.-...++..|.|+.|+-....++.+.. |+ +......++.+|.+++..++|..|...|++++++.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 44577788899999999999999888777641 22 23456688999999999999999999999987541
Q ss_pred C-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 78 P-------------------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 78 p-------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
| ...+..|.+|.|+..++++++|+..++.+ ...-..+.+...+++++
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 1 11268899999999999999999988754 22235667777777664
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.26 E-value=5.1e-05 Score=63.37 Aligned_cols=163 Identities=9% Similarity=-0.029 Sum_probs=112.2
Q ss_pred ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcH-------------------------------------H
Q psy1039 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH-------------------------------------E 45 (206)
Q Consensus 3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~-------------------------------------~ 45 (206)
...|..+..|...+..+...|+.+.|...|++|+.. |... .
T Consensus 207 ~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 207 DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHH
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccc
Confidence 345778899999999999999999999999999987 4410 0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 124 (206)
...+|...+....+.+..+.|...|.++ ...+.....|...|..-...+ +.+.|...|+++++..|+++..+......
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 1123344444444567788899999998 444445667777777666666 58999999999999888888766555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039 125 FAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
....++... +..+|.++ +.....+......-...|..+.+.+.+
T Consensus 364 e~~~~~~~~--------aR~l~er~---~k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 364 LLRIGDEEN--------ARALFKRL---EKTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp HHHHTCHHH--------HHHHHHHS---CCBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcCCHHH--------HHHHHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444333332 55677777 335666777776666677666555545
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.24 E-value=1.3e-05 Score=54.25 Aligned_cols=83 Identities=10% Similarity=0.013 Sum_probs=70.1
Q ss_pred chhhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYET---ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~---A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
++...++.|+.|+.+.+.++..+ +|.+++..++.+.| ...-.+++.+|..++++|+|.+|..+++.+++++|+|.
T Consensus 31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 34567899999999999998887 99999998886523 12678899999999999999999999999999999998
Q ss_pred HHHHHHHH
Q psy1039 82 KALFRRCQ 89 (206)
Q Consensus 82 ~~~~~la~ 89 (206)
.+.-.+..
T Consensus 109 QA~~Lk~~ 116 (126)
T 1nzn_A 109 QAKELERL 116 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87655443
No 223
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.20 E-value=6.6e-05 Score=51.61 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039 46 RATCLKNRAAVYLKQNQ---NDKVIEDCSKSLEIVPD-DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 121 (206)
+....|+.|-++.+... ..+++..++..+...|. ..+++|.+|..++++|+|.+|.++.+.+++.+|+|..+....
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 47788999999988876 45799999999998884 678999999999999999999999999999999999887776
Q ss_pred HHHHHHH
Q psy1039 122 SRLFAIV 128 (206)
Q Consensus 122 ~~~~~~~ 128 (206)
..+...+
T Consensus 118 ~~Ie~~i 124 (144)
T 1y8m_A 118 SMVEDKI 124 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.18 E-value=5.4e-05 Score=52.51 Aligned_cols=114 Identities=8% Similarity=-0.083 Sum_probs=95.8
Q ss_pred cchhhHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhccccCc----HHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039 4 NNMNDYNKLKESGNSAFKQGDY------ETALDFYTKALKVTAEES----HERATCLKNRAAVYLKQNQNDKVIEDCSKS 73 (206)
Q Consensus 4 ~~p~~~~~~~~~g~~~~~~g~~------~~A~~~~~~al~~~~p~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 73 (206)
..|++++.|+......-+.|+. +.-++.|++|+..-+|.. .....+|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5799999999999999999999 889999999999883321 2245667777755 5669999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q psy1039 74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118 (206)
Q Consensus 74 l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 118 (206)
+.++..+.+.|...|.--.+.|+...|.+.+.+++...|......
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 999888999999999999999999999999999999999865443
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.12 E-value=3.4e-06 Score=65.19 Aligned_cols=77 Identities=13% Similarity=0.020 Sum_probs=67.8
Q ss_pred Ccccchh--hHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH-ccCHHHHHHHHHH
Q psy1039 1 MIDNNMN--DYNKLKESGNSAFKQ-----GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK-QNQNDKVIEDCSK 72 (206)
Q Consensus 1 al~~~p~--~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~ 72 (206)
|++++|+ ++.++..+|..|... |+.++|..+|++|++++ |+. +...++..|..+.. .|++++|...+++
T Consensus 189 AleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-P~~--~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 189 ACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-SAH--DPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-CTT--CSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-CCC--CchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3567888 788999999999995 99999999999999999 961 38888899998877 5999999999999
Q ss_pred HhhhCCCC
Q psy1039 73 SLEIVPDD 80 (206)
Q Consensus 73 al~l~p~~ 80 (206)
++..+|..
T Consensus 266 AL~a~p~~ 273 (301)
T 3u64_A 266 ALAIDPES 273 (301)
T ss_dssp HHHCCGGG
T ss_pred HHcCCCCC
Confidence 99998863
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.03 E-value=0.00012 Score=49.74 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYE---TALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~---~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
.+++.|+.|+.+.+..+.. ++|.+++..++.+ |.. .-++++.+|..++++|+|++|..+++.++++.|+|..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~--~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGG--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cch--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 5678899999999988664 6899999999887 731 678899999999999999999999999999999998876
Q ss_pred HHHHH
Q psy1039 85 FRRCQ 89 (206)
Q Consensus 85 ~~la~ 89 (206)
-....
T Consensus 116 ~Lk~~ 120 (134)
T 3o48_A 116 ALKSM 120 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.97 E-value=0.00019 Score=49.37 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYE---TALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~---~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
-..+..|+.|+.+.+..+.. +++.+++..++.. |.. .-++++.+|..++++|+|.+|..+++.++++.|+|..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~--~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CST--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccc--hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 46788999999999988765 6999999999987 732 67789999999999999999999999999999999877
Q ss_pred HHHHH
Q psy1039 84 LFRRC 88 (206)
Q Consensus 84 ~~~la 88 (206)
.-...
T Consensus 114 ~~Lk~ 118 (144)
T 1y8m_A 114 GALKS 118 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 228
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.76 E-value=0.0036 Score=52.32 Aligned_cols=155 Identities=11% Similarity=-0.026 Sum_probs=113.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHhhhC-CCC
Q psy1039 12 LKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQ---------NQNDKVIEDCSKSLEIV-PDD 80 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~l~-p~~ 80 (206)
+...=..+.+.|+.++|+..|++..+.+- |+ ...|..+-.++... +..++|.+.|++..... +.+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd----~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS----QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC----HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 44455677899999999999999887531 55 34444444444333 34788999999876543 347
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCh
Q psy1039 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRV--EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD--TSAPM 156 (206)
Q Consensus 81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 156 (206)
..+|..+-..+...|++++|...|++.... .| +......+-..+...++.+. +..+|+.+.. ..++.
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~--------A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADK--------AYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHH--------HHHHHHHHHhcCCCCCH
Confidence 788899999999999999999999988764 34 44555555555556566555 4457777666 46778
Q ss_pred hhhHHHHhhhhHhcccchhhHHH
Q psy1039 157 DKRVTAVNNLVVLAREMSGAEML 179 (206)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~ 179 (206)
.....+...+...|+.++|.+.+
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHH
Confidence 88889999999999999888877
No 229
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.75 E-value=0.0011 Score=55.19 Aligned_cols=136 Identities=9% Similarity=-0.095 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH---------------
Q psy1039 26 ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA--------------- 90 (206)
Q Consensus 26 ~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~--------------- 90 (206)
......|++++... |. .+.+|...+..+...|+.+.|...|++|+.. |.+...++..+..
T Consensus 196 ~Rv~~~ye~al~~~-p~---~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YY---AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHHT-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 45677999999999 98 7999999999999999999999999999999 9886555443332
Q ss_pred -------------------------HHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy1039 91 -------------------------YEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAIVTK-RMQENEQLQNKVH 143 (206)
Q Consensus 91 -------------------------~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ 143 (206)
....+..+.|...|+++ . .|. ...++...+.+....+. .. .+.
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~--------~ar 340 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRA--------TPY 340 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSH--------HHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChH--------HHH
Confidence 22345567777777777 3 332 22233222333222221 11 245
Q ss_pred HHHHHhcC-CCCChhhhHHHHhhhhHhcccchhh
Q psy1039 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGA 176 (206)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 176 (206)
.+|+.++. .|.+...+...+......|+.+.|.
T Consensus 341 ~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 341 NIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 56666666 5555566666666555555554433
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.62 E-value=0.00014 Score=51.28 Aligned_cols=120 Identities=8% Similarity=0.053 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---------KALFRRCQAYEAIGKFEEAYTDAKHIHRVE---PT 113 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~ 113 (206)
+.+.++.-...++..|.|+.|+.....++.+..+++ .+++.+|.+++..|+|..|...|++++.+. |.
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777788899999999999999876643333 378899999999999999999999997743 23
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039 114 NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV 184 (206)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 184 (206)
++.....+ +.... . .. ..+.+.+.+.+...+.|+..++++.+|+..+-.=|.
T Consensus 99 ~~s~~~~~-------~~~ss--~-----p~-----s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 99 TSKVRPST-------GNSAS--T-----PQ-----SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred CCCccccc-------cccCC--C-----cc-----cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 32221111 10000 0 00 112356788999999999999999999999865444
No 231
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.34 E-value=0.0099 Score=47.98 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-------c-----------HHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------S-----------HERATCLKNRAAVYLKQNQNDKVIEDCS 71 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-------~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 71 (206)
+.+...|......|+.+.|...+.+|+.+..+. . .....+...++..+...|++.+++..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344455666667899999999999999986311 0 1223345567788889999999999999
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 72 KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 72 ~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
+++..+|-+..++..+-.++...|+..+|...|+++-.
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987644
No 232
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.26 E-value=0.0031 Score=52.59 Aligned_cols=81 Identities=12% Similarity=0.073 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (206)
Q Consensus 48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 127 (206)
.++..+|........+..|..+|.+|..+.|++..++..+|.+....|+.-+|+-+|-+++......+.+..++..+...
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46677888888888999999999999999999999999999999999999999999999999887888888888877765
Q ss_pred H
Q psy1039 128 V 128 (206)
Q Consensus 128 ~ 128 (206)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 233
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.20 E-value=0.013 Score=41.63 Aligned_cols=104 Identities=16% Similarity=0.071 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh--h--C----
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE--I--V---- 77 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--l--~---- 77 (206)
|..++--..++..++-.|.|..++-++. .++ .....+..+.||.+.++|..|+..++..++ . +
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~---~lN------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d 100 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLH---KLN------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD 100 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHH---TCC------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHH---hcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc
Confidence 3344555677888999999998876554 344 567778899999999999999999999983 2 2
Q ss_pred ---------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q psy1039 78 ---------PDDPKA-LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118 (206)
Q Consensus 78 ---------p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 118 (206)
|.+-+. +..+|.+..+.|+.++|+.++.+....+|-.+.+.
T Consensus 101 ~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 101 ARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 333333 44579999999999999999999988887655444
No 234
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.06 E-value=0.0011 Score=58.50 Aligned_cols=68 Identities=41% Similarity=0.685 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHHHhcchHHHHHHHhcccCChhhhhhhc
Q psy1039 138 LQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLALT 205 (206)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
...++.++|+-+++...+.+.+...++-+..+.|++.+++.+|++++..+++++++.++++++++++|
T Consensus 4 ~~~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 71 (810)
T 3now_A 4 TSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMV 71 (810)
T ss_dssp HHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ccHHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHH
Confidence 44568899999999889999999999999999999999999999999999999999449999999985
No 235
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.83 E-value=0.041 Score=45.89 Aligned_cols=98 Identities=11% Similarity=0.095 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-CCCHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKALF 85 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~ 85 (206)
+...+..+-..+.+.|++++|..+|....+.+- |+ ...|..+-..|.+.|++++|...|++..+.. ..+...|.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~ 179 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR----LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA 179 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 455778888899999999999999998776531 65 6667778888889999999999999987653 23677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
.+-.++...|++++|.+.+++..+
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHH
Confidence 899999999999999999988765
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0065 Score=53.09 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
..++..-+.-+...|+|+-|+...++|+..-|..-.+|+.|+.+|..+|+|+.|.-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4456666777788999999999999999999999999999999999999999999888766
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0051 Score=53.78 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 73 (206)
....+...+..+..+|+|+-|+.+.++|+... |. ....|+.|+.||..+|+|+.|+-.++-+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-Ps---eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LD---SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SS---CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-ch---hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34567778889999999999999999999999 98 8999999999999999999999988876
No 238
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.70 E-value=0.04 Score=44.51 Aligned_cols=98 Identities=11% Similarity=0.001 Sum_probs=77.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC---CCCHH----HH
Q psy1039 14 ESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV---PDDPK----AL 84 (206)
Q Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~---p~~~~----~~ 84 (206)
.+|..|+..|+|.+|+..+.+..+-.+ .++....+.+......|...+++.++...+.++.... +.+|. ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 789999999999999999988887541 1244567788888999999999999999999887553 23332 33
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhcC
Q psy1039 85 FRRCQAYE-AIGKFEEAYTDAKHIHRVE 111 (206)
Q Consensus 85 ~~la~~~~-~~g~~~~A~~~~~~al~~~ 111 (206)
..-|..+. ..++|..|...|-.++...
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 44588888 8999999999998887543
No 239
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.024 Score=46.31 Aligned_cols=101 Identities=15% Similarity=-0.009 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--CCCHH----HH
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PDDPK----AL 84 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p~~~~----~~ 84 (206)
++..+|..++..|+++.|++.|.++.... .........+.....++...++|..+..++.++-.+. ..++. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKA-ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46789999999999999999999998876 4333367788888889999999999999999986552 22332 33
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEP 112 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~~~p 112 (206)
...|..+...++|..|...|-.++....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 4457888899999999999988876543
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.52 E-value=0.045 Score=41.68 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=56.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039 17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (206)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 83 (206)
..+++.|+.++|+......++.. |. ++.....+-..+.-.|+|+.|...++.+.+++|+....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~---da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-Cc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 35678899999999999999999 98 88989999999999999999999999999999987543
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.50 E-value=0.028 Score=42.81 Aligned_cols=71 Identities=17% Similarity=0.112 Sum_probs=62.9
Q ss_pred HHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039 56 VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (206)
Q Consensus 56 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 126 (206)
.+++.|++++|++.+...++-+|.|.+....+-..++-.|+|+.|.+-++.+.+++|+.......+..+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999998776655544433
No 242
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.23 E-value=0.033 Score=46.44 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~ 90 (206)
.+..+|........+..|..+|.+|+.+. |+ +...+..+|......|+.-+|+-+|.+++.....++.+.-++...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~---~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV-PS---NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC-CC---CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 45678999999999999999999999999 99 899999999999999999999999999998888888888888777
Q ss_pred HHH
Q psy1039 91 YEA 93 (206)
Q Consensus 91 ~~~ 93 (206)
+..
T Consensus 230 f~~ 232 (497)
T 1ya0_A 230 LSK 232 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.22 E-value=0.049 Score=50.02 Aligned_cols=172 Identities=13% Similarity=0.053 Sum_probs=104.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-------------------cHHHHHHHHHHHHHHHHccCHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------------------SHERATCLKNRAAVYLKQNQNDKV 66 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-------------------~~~~~~~~~~la~~~~~~~~~~~A 66 (206)
|.++..-|.+|.+++..|++++|..+|.++......+ ....+..|......+.+.+.++.+
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v 918 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 918 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence 3445566999999999999999999999875421010 001234577788888999999999
Q ss_pred HHHHHHHhhhCC-CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH-----
Q psy1039 67 IEDCSKSLEIVP-DDPK----ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE----- 136 (206)
Q Consensus 67 ~~~~~~al~l~p-~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~----- 136 (206)
++....|++..+ ++.. .|.++=..+..+|+|++|...+... |+...-...+..+-..+=+..+...
T Consensus 919 i~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~----pd~~~r~~cLr~LV~~lce~~~~~~L~~lp 994 (1139)
T 4fhn_B 919 LEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL----STTPLKKSCLLDFVNQLTKQGKINQLLNYS 994 (1139)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH----HHSSSCHHHHHHHHHHHHHHCCHHHHHHHT
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHhCCChhhhhCCC
Confidence 999999997754 3332 5667778899999999998776433 3222222333332222211111000
Q ss_pred --HHHHHHHHHH-HHhc---CCCCChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039 137 --QLQNKVHNMF-KYVF---DTSAPMDKRVTAVNNLVVLAREMSGAEMLLK 181 (206)
Q Consensus 137 --~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 181 (206)
.....+.... .++. +......+..-+--+++..|++.+|++.++.
T Consensus 995 f~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe 1045 (1139)
T 4fhn_B 995 MPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYE 1045 (1139)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHH
Confidence 0011121121 1111 2222334556667777888999888888764
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.04 E-value=0.057 Score=37.46 Aligned_cols=107 Identities=11% Similarity=0.104 Sum_probs=75.0
Q ss_pred cCcHHHHHHHHHHHHHHHHccCH------HHHHHHHHHHhhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1039 41 EESHERATCLKNRAAVYLKQNQN------DKVIEDCSKSLEIVPDD--------PKALFRRCQAYEAIGKFEEAYTDAKH 106 (206)
Q Consensus 41 p~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~l~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~ 106 (206)
|+ +.+.|........+.|+. ++-++.|++|+..-|.. ...|.+.|.. ...++.++|...|+.
T Consensus 10 p~---~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 10 AN---NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp CC---SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred CC---CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 77 788899988888888998 89999999999776643 2345555643 667999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039 107 IHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (206)
Q Consensus 107 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (206)
++.+......++...+.-..+.++... +...+.+++. .|.+.+..
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~k--------ARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKK--------SKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHTTCBCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHH--------HHHHHHHHhccCCCcHHHH
Confidence 999855554444444444333333333 6668888888 45544443
No 245
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.79 E-value=0.13 Score=44.75 Aligned_cols=45 Identities=13% Similarity=-0.097 Sum_probs=26.1
Q ss_pred HHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 58 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
...|++++|.+.++.. ++...|..+|..+...|+++.|.++|.++
T Consensus 663 l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456666666555432 24456666666666666666666666554
No 246
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.64 E-value=0.37 Score=34.27 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--ccc-cC-----------cHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy1039 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALK--VTA-EE-----------SHERATCLKNRAAVYLKQNQNDKVIEDCS 71 (206)
Q Consensus 6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~~-p~-----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 71 (206)
-+.+.+.+-.+.++....+|..|+.+.+..++ .+. |+ +....-.+..+|..+...|.-++|+.+|.
T Consensus 59 lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 59 LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 45678889999999999999999999999993 320 22 11133345668999999999999999999
Q ss_pred HHhhhCCCCH
Q psy1039 72 KSLEIVPDDP 81 (206)
Q Consensus 72 ~al~l~p~~~ 81 (206)
......|-.+
T Consensus 139 ~Sf~~~~lf~ 148 (242)
T 3kae_A 139 RSFGKSFLFS 148 (242)
T ss_dssp HHHHHCCCHH
T ss_pred hhcCCccccc
Confidence 9888876543
No 247
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.57 E-value=0.28 Score=42.60 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSK 72 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~ 72 (206)
...|..+|..+.+.++++.|+.+|.+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555555555555555544
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.6 Score=33.20 Aligned_cols=53 Identities=19% Similarity=0.049 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
....|.++ ...|+++.|.+.++.. ++...|-.+|......|+++-|..+|.++
T Consensus 8 ~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 8 PHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34445454 4578888887777654 56777888888888888888888888776
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.79 E-value=1.2 Score=36.00 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVT 39 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 39 (206)
..+.+.+|..|...|++++-.+++.......
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 49 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFL 49 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999888877655543
No 250
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.11 Score=43.23 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=61.2
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHhcccc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALD----------FYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~----------~~~~al~~~~p--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 72 (206)
++-.+..||..+.++-..|+....+. .+-.+++.... +....+.++..+=..|...+.|++|....++
T Consensus 177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk 256 (523)
T 4b4t_S 177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK 256 (523)
T ss_dssp --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence 44456667777777777776654321 22222222110 1123567777788899999999999999999
Q ss_pred HhhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039 73 SLEIVPDD-------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116 (206)
Q Consensus 73 al~l~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 116 (206)
+. .|.+ ...+|.+|.++.-.++|.+|.+++..|+...|.+..
T Consensus 257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 85 4432 345777899999999999999999999999887653
No 251
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.27 Score=34.98 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=33.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039 17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73 (206)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 73 (206)
...+..|+++.|.+..+. ++ +...|..+|...+..|+++-|..+|.++
T Consensus 13 ~LAL~lg~l~~A~e~a~~---l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKK---LN------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHTTCHHHHHHHHHH---HC------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHH---hC------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344567888888766543 23 3567888888888888888888887764
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.39 E-value=0.18 Score=40.52 Aligned_cols=62 Identities=5% Similarity=0.005 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 75 (206)
.+...++..+...|++.+|+..+..++..+ |- +-.++..+-.++...|+..+|+..|+++.+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PY---REPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667788899999999999999999999 97 678899999999999999999999988654
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.14 E-value=1.4 Score=40.09 Aligned_cols=97 Identities=5% Similarity=-0.125 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----ccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-CCCHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALK-----VTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPK 82 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~ 82 (206)
...+..+-..|.+.|+.++|...|....+ .. |+ ...|..+-..|.+.|++++|.+.|++..... ..|.-
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~-Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-LT----LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT-CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC-CC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 44677788899999999999999966432 34 75 6778888889999999999999999987542 34777
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHhc
Q psy1039 83 ALFRRCQAYEAIGKF-EEAYTDAKHIHRV 110 (206)
Q Consensus 83 ~~~~la~~~~~~g~~-~~A~~~~~~al~~ 110 (206)
.|..+-.++.+.|+. ++|.+.++.....
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 888888899999984 7888888777663
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.53 E-value=2.6 Score=34.45 Aligned_cols=103 Identities=12% Similarity=0.024 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh---hCCCCH-
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE---IVPDDP- 81 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---l~p~~~- 81 (206)
.+.....++..+...|++.+|...+.....-... +.......+......+...++|..|...++++.. -.+..+
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 4556678999999999999999998886542101 2234567788888899999999999999998642 233333
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 82 ---KALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 82 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
..+...|..+...++|.+|..+|..++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34556689999999999999999887764
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.18 E-value=0.77 Score=42.20 Aligned_cols=112 Identities=10% Similarity=0.031 Sum_probs=74.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-hCC---------------
Q psy1039 15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-IVP--------------- 78 (206)
Q Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-l~p--------------- 78 (206)
+...+...|.++-+..+ +... |. ++...+.+|.+++..|++++|..+|.++-. +.+
T Consensus 818 l~~~l~~~~~~~~~~~l----~~~~-~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQL----IGWL-NS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHSCTTHHHHH----HHHS-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHH----hhhc-cC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 34456666777665442 2334 44 455568899999999999999999988632 111
Q ss_pred -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hh----HHHHHHHHHHHHHHHHHH
Q psy1039 79 -------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN-KA----IQPVLSRLFAIVTKRMQE 134 (206)
Q Consensus 79 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~----~~~~l~~~~~~~~~~~~~ 134 (206)
..+..|+....++...+.++.+++..+.|++..+.+ +. .+..+-.....++.++++
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 113456677888899999999999999999876544 32 334444444555555553
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.54 E-value=0.95 Score=38.76 Aligned_cols=89 Identities=6% Similarity=-0.023 Sum_probs=58.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC
Q psy1039 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG 95 (206)
Q Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 95 (206)
|..++..+...++...+.+..... ++ ....-...+.+ ++.|++..|..+|.+.-.-.+......|++|.++..+|
T Consensus 259 a~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~e~~~r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g 333 (618)
T 1qsa_A 259 AWRLMGNDVTDEQAKWRDDAIMRS-QS---TSLIERRVRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERG 333 (618)
T ss_dssp HHTSCSTTCCHHHHHHHHHHHHTC-CC---HHHHHHHHHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChHHHHHHHhccccC-CC---hHHHHHHHHHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcC
Confidence 333344443445566666654433 33 22222223333 46699999999998765544456888999999999999
Q ss_pred CHHHHHHHHHHHHh
Q psy1039 96 KFEEAYTDAKHIHR 109 (206)
Q Consensus 96 ~~~~A~~~~~~al~ 109 (206)
+-++|...|+++..
T Consensus 334 ~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 334 REAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999888765
No 257
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=89.16 E-value=2.7 Score=26.06 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY 57 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~ 57 (206)
+.+......|..+++.++|.+|+..|+++..+. .+..+....-+.++.|-
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t-en~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS-DNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc-cCHHHHHHHHHHHHHHH
Confidence 567777788888888888888888888888665 44222222225555554
No 258
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.98 E-value=4.1 Score=27.89 Aligned_cols=60 Identities=20% Similarity=0.132 Sum_probs=39.4
Q ss_pred HHHHHH-HHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 50 LKNRAA-VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 50 ~~~la~-~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
++.+|. .+..+|+-++-...+...+.-+|-++..++.+|.+|.+.|+..+|.+.+.+|=+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344444 334556666666666665566667788888888888888888888877776654
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.92 E-value=2 Score=34.92 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVP---DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
++..+|..|+..|++++|.+.|.++..... ...+.++....+....++|..+...+.++..+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 467899999999999999999999876533 34678889999999999999999999998765
No 260
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.99 E-value=3.5 Score=37.15 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=72.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-hCCC-------------
Q psy1039 14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-IVPD------------- 79 (206)
Q Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-l~p~------------- 79 (206)
.+...+...|.++-|. ..+... |. ++..-|.+|.++...|++++|..+|.+|-. +.+.
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~-~~---t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~l 886 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWL-NS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 886 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGC-CS---SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHH
T ss_pred HHHHHHHHhcHHHHHH----HHHhhc-CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhc
Confidence 4667778888887653 344555 65 556668899999999999999999998642 2111
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChhHHH
Q psy1039 80 ---------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV-EPTNKAIQP 119 (206)
Q Consensus 80 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~ 119 (206)
....|.....++...+-++-++...+.|+.. .++++....
T Consensus 887 l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~ 936 (950)
T 4gq2_M 887 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSI 936 (950)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHH
T ss_pred cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchH
Confidence 1235777899999999999999999999974 455655433
No 261
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=87.58 E-value=1.6 Score=26.06 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccC
Q psy1039 13 KESGNSAFKQGDYETALDFYTKALKVTAEE 42 (206)
Q Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~p~ 42 (206)
-.+|..+...|++++|+.+|-+|+... |+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc-~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVC-GQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc-CC
Confidence 357999999999999999999999999 87
No 262
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.53 E-value=11 Score=33.86 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=40.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1039 53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108 (206)
Q Consensus 53 la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 108 (206)
+...+...|.++-+ ...+..-|.++..-|-+|.++...|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45555677777654 34567788888888889999999999999999998764
No 263
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=85.32 E-value=1.8 Score=27.00 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKAL 36 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al 36 (206)
.+...-.++..+...|+|++||++.+++.
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455555666666666666665555544
No 264
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=85.17 E-value=4.7 Score=29.93 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=38.4
Q ss_pred CCChhhhHHHHhhhhHhcccchhhHHHHhcch---HHHHHHHhcccCChhhhhhhc
Q psy1039 153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV---AKQINTLLKCETNEEIYLALT 205 (206)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 205 (206)
.............+..+|+.+.|.+-++++-. ...+.++ ..+.|+..|++.+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l-~~~gd~~~Yi~~L 142 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQI-GSVDNPTNYLTQL 142 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC---CCSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHh-cccCCHHHHHHHH
Confidence 44566677788999999999999999998877 4444444 5578888887653
No 265
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=84.89 E-value=1.9 Score=26.47 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALK 37 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 37 (206)
+..+...|...=+.|+|++|+.+|..+++
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444445555555555555555555544
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.28 E-value=12 Score=32.04 Aligned_cols=124 Identities=9% Similarity=-0.021 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q psy1039 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY 91 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~ 91 (206)
....+...+...+.+.|...+........-+.......+..+|.-....+...++..++.+.....+ +....-.++...
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~A 295 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMA 295 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHH
Confidence 3344566666678899999988765432012111233344444444444546678888887665443 333344444455
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039 92 EAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (206)
Q Consensus 92 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 136 (206)
...|+++.|...|.+.-.-.+..+.....+++.....++..++..
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~ 340 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKE 340 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHH
Confidence 677999999999987655333557778888888877776666443
No 267
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=82.95 E-value=2.5 Score=25.86 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALK 37 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 37 (206)
+..+...|...=+.|+|++|+.+|..+++
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444445555555555555555555444
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.66 E-value=15 Score=28.48 Aligned_cols=39 Identities=8% Similarity=-0.113 Sum_probs=30.4
Q ss_pred HHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039 142 VHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 142 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
+..+-.+.-+ .-++.......|..+..-+++.+|..++.
T Consensus 119 ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 119 MNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4445555544 45888999999999999999988888886
No 269
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=82.38 E-value=2.9 Score=26.33 Aligned_cols=28 Identities=36% Similarity=0.620 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccC
Q psy1039 14 ESGNSAFKQGDYETALDFYTKALKVTAEE 42 (206)
Q Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~p~ 42 (206)
.+|..+...|+++.|+.+|-+|+.++ |+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc-~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVC-GQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH-SC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHc-CC
Confidence 57889999999999999999999998 87
No 270
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.40 E-value=4.7 Score=33.68 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE----SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
..+..+..+=..|+..+.|++|..+..++. . |. .......++..|.++...++|.+|.+++..|+...|.+
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--f-P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE--Y-PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--S-CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--C-CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 345667777888999999999999999985 3 42 12346778889999999999999999999999987754
No 271
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=80.96 E-value=3.4 Score=25.48 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKV 38 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 38 (206)
+..+...|...-..|+|++|+.+|..+++.
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555556666666666666666553
No 272
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=80.70 E-value=18 Score=33.09 Aligned_cols=68 Identities=10% Similarity=-0.117 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV--EPTN 114 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 114 (206)
...|..+-.+|.+.|+.++|...|....+. -..+.-.|..+-..+...|++++|.+.|++.... .|+.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 345677888899999999999999765432 3457788999999999999999999999988763 4543
No 273
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=79.96 E-value=6.9 Score=23.28 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 118 (206)
.+|..+...|++++|..+|-+|+...|.=.+..
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 456777777777777777777777766644443
No 274
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=77.66 E-value=5.8 Score=28.63 Aligned_cols=87 Identities=14% Similarity=0.041 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 84 (206)
+.....|.+|..++..++|.+|.+.+..|++.. |.. ...-.++..+--+-+.+|++..- ..+++ ++. ..|
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~-~~~~~~~k~~IL~yLIp~~Ll~G~iP~~-~ll~~-----~~~-~~y 83 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHC-HRSSQKNKRMILIYLLPVKMLLGHMPTV-ELLKK-----YHL-MQF 83 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHHTTCEECH-HHHHH-----TTC-GGG
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHC-CHhHHHHHHHHHHHHHHHHHHcCCCCCH-HHhhh-----Cch-hHH
Confidence 456778999999999999999999999999998 752 11223344444445567775431 12221 111 245
Q ss_pred HHHHHHHHHcCCHHHHHH
Q psy1039 85 FRRCQAYEAIGKFEEAYT 102 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~ 102 (206)
..+.. ..+.|+...-.+
T Consensus 84 ~~L~~-Avr~Gdl~~f~~ 100 (203)
T 3t5x_A 84 AEVTR-AVSEGNLLLLHE 100 (203)
T ss_dssp HHHHH-HHHHTCHHHHHH
T ss_pred HHHHH-HHHhCCHHHHHH
Confidence 55554 346677644333
No 275
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=77.66 E-value=4.6 Score=25.25 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALK 37 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 37 (206)
+..+...|...-..|+|++|+.+|..+++
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444455555555555555555554444
No 276
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=77.53 E-value=4.7 Score=24.60 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKV 38 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 38 (206)
+.+..+...|...-..|+|++|+.+|..+++.
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666553
No 277
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=77.13 E-value=16 Score=25.40 Aligned_cols=30 Identities=10% Similarity=0.263 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q psy1039 10 NKLKESGNSAFKQGDYETALDFYTKALKVT 39 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 39 (206)
..-+..|..+|+.|+|=+|-+.++.+....
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~ 62 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNY 62 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 345667777788888888888888777765
No 278
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=76.57 E-value=13 Score=25.38 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=42.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039 17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 76 (206)
..+..+|.-++--+.+...+... +- +++.+..+|.+|.+.|+..+|.+...+|.+-
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~-~~---~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNN-EV---SASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--C-CS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHhHHHHHHHHHhccC-CC---ChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44556777777767777655544 32 4899999999999999999999999998864
No 279
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=75.73 E-value=9.2 Score=27.57 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH-----HHHHHHHHHHcCCHH
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA-----LFRRCQAYEAIGKFE 98 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~-----~~~la~~~~~~g~~~ 98 (206)
.....+.+|..++..++|.+|.+.+..|+...|..... +-.+--+-.-+|+..
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 46678889999999999999999999999998876432 222333345567654
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=75.08 E-value=6.1 Score=24.68 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
.+..+..++..+.+.|+|++||++..++.
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 45566678888888888888888776644
No 281
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=73.72 E-value=5.6 Score=26.07 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhc
Q psy1039 27 TALDFYTKALKV 38 (206)
Q Consensus 27 ~A~~~~~~al~~ 38 (206)
.|+.+..+|++.
T Consensus 17 kAi~lv~~Ave~ 28 (117)
T 2cpt_A 17 KAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 282
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=73.70 E-value=15 Score=31.65 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF 97 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 97 (206)
.......|...+..|+|.-|.+..+.++..+|+|..+...++.+|.++|.-
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 344566777888889999999999999999999999999899988888743
No 283
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=73.58 E-value=2.8 Score=25.38 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALKVT 39 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 39 (206)
.-..-.+|+-+...|+|+.|+.+|+.++..-
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI 42 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQM 42 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3345678889999999999999999998864
No 284
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=72.26 E-value=9.7 Score=31.26 Aligned_cols=64 Identities=5% Similarity=-0.022 Sum_probs=49.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhhhCC--C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC
Q psy1039 51 KNRAAVYLKQNQNDKVIEDCSKSLEIVP--D--------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV-EPTN 114 (206)
Q Consensus 51 ~~la~~~~~~~~~~~A~~~~~~al~l~p--~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 114 (206)
..+-.+|++.++...|...++..-...+ . -...+|.+|..+...++|.+|.+.+..|+.. .|.+
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3466789999999998888865322221 1 1346788999999999999999999999998 7765
No 285
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=71.54 E-value=3.5 Score=24.45 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=26.2
Q ss_pred HHhhhhHhcccchhhHHHHhcch-HHHHHHHhc
Q psy1039 162 AVNNLVVLAREMSGAEMLLKSGV-AKQINTLLK 193 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 193 (206)
...++.+....|.++..|++||. +..|+++..
T Consensus 31 ~~~~lq~~~~NP~~~~k~~~nP~v~~~i~kl~~ 63 (71)
T 2llw_A 31 MQSILQQAQQNPAALQEHMKNPEVFKKIQTLIA 63 (71)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHhCHHHHHHHHHHHH
Confidence 44555567778999999999999 888888876
No 286
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.35 E-value=41 Score=26.35 Aligned_cols=39 Identities=10% Similarity=-0.069 Sum_probs=27.7
Q ss_pred HHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039 142 VHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLL 180 (206)
Q Consensus 142 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (206)
+..+-.+.-+ +-.+.......|..+.+-+.+.+|-.+++
T Consensus 121 ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 121 MIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3344444333 45788888889999998888888877766
No 287
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=67.33 E-value=16 Score=31.44 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 133 (206)
+.....|...+..|+|.-|.+....++..+|+|..+...++.++.+++....
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3567788889999999999999999999999999999999999998886543
No 288
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=66.99 E-value=20 Score=22.30 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccC
Q psy1039 13 KESGNSAFKQGDYETALDFYTKALKVTAEE 42 (206)
Q Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~p~ 42 (206)
+..|..+++.|+|=+|-+.++...... |.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~-~~ 33 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKA-TG 33 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhC-CC
Confidence 456777888888888888888877766 53
No 289
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=65.95 E-value=44 Score=26.71 Aligned_cols=44 Identities=11% Similarity=-0.057 Sum_probs=33.7
Q ss_pred HHHHHHHHhhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 66 VIEDCSKSLEI-----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 66 A~~~~~~al~l-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
++..|.+++.. +..+.-+|..+|..+++.+++.+|...+..+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 55556665543 456677888899999999999999999877655
No 290
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.70 E-value=53 Score=26.62 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHh-hh---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCChh
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSL-EI---VPD--DPKALFRRCQAYEAIGKFEEAYTDAKHIHR---VEPTNKA 116 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al-~l---~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~ 116 (206)
.+.+...++..+...|++.+|...+.... +. .+. -.+.+......+...++|..|...+.++.. -.+.++.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 56667889999999999999999998865 22 111 145777889999999999999999988743 2444554
Q ss_pred HH
Q psy1039 117 IQ 118 (206)
Q Consensus 117 ~~ 118 (206)
..
T Consensus 216 lk 217 (445)
T 4b4t_P 216 LK 217 (445)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 291
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=63.01 E-value=5.5 Score=22.75 Aligned_cols=32 Identities=6% Similarity=-0.028 Sum_probs=25.2
Q ss_pred HHhhhhHhcccchhhHHHHhcch-HHHHHHHhc
Q psy1039 162 AVNNLVVLAREMSGAEMLLKSGV-AKQINTLLK 193 (206)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 193 (206)
...++.+..+.+.++..+++||. +..+.+++.
T Consensus 23 ~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~ 55 (62)
T 2lnm_A 23 VQAALMECSENPMNIMKYQNDKEVMDVFNKISQ 55 (62)
T ss_dssp HHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHH
Confidence 45566667788999999999999 777777765
No 292
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=62.54 E-value=12 Score=23.57 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
.+|..+...|+++.|+.+|-+|+...|.=
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 45777777777777777777777766653
No 293
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=59.49 E-value=34 Score=28.06 Aligned_cols=67 Identities=7% Similarity=0.051 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccc-cC-----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-CCCC
Q psy1039 14 ESGNSAFKQGDYETALDFYTKALKVTA-EE-----SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-VPDD 80 (206)
Q Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~-p~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-~p~~ 80 (206)
.+-.+|++.|+...+...+...-.... |. .......++.+|..++..++|.+|.+.+..|+.. .|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 344678899998888887755422220 11 1235677888999999999999999999999988 7754
No 294
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=57.45 E-value=35 Score=27.72 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 63 NDKVIEDCSKSLEIVPDD--------PKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
|+..+.+++.|+..-|.. ..++..+|+++...|+|++|....++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 456677777777665532 45788899999999999999999998885
No 295
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=56.52 E-value=74 Score=25.94 Aligned_cols=44 Identities=7% Similarity=-0.119 Sum_probs=33.2
Q ss_pred HHHHHHHHhhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 66 VIEDCSKSLEI-----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 66 A~~~~~~al~l-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
++..|.+++.. ...+.-+|..+|..+++.+++.+|...+-.+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 45555555533 445677888999999999999999999977654
No 296
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.40 E-value=53 Score=23.65 Aligned_cols=66 Identities=9% Similarity=-0.171 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHh--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSL--EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al--~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 112 (206)
...+|...+..+ ..+...++...|.... .+.-..+..|-.-|..+...|++.+|...|+.+++...
T Consensus 79 YLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 79 FLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 566666666654 2344778888887765 44556777788889999999999999999999998653
No 297
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=55.22 E-value=25 Score=21.19 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=6.0
Q ss_pred HccCHHHHHHHHHH
Q psy1039 59 KQNQNDKVIEDCSK 72 (206)
Q Consensus 59 ~~~~~~~A~~~~~~ 72 (206)
..|+|++|+..|..
T Consensus 25 ~~g~y~eAl~~Y~~ 38 (85)
T 2v6x_A 25 TATQYEEAYTAYYN 38 (85)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 33444444444433
No 298
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=53.84 E-value=40 Score=27.42 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 63 NDKVIEDCSKSLEIVPDD--------PKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
|+..+.+++.|+.+-|.. .-++..+|+++...|+|++|....+.++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 356677777777665532 45788899999999999999999998875
No 299
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=53.57 E-value=44 Score=27.25 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 63 NDKVIEDCSKSLEIVPDD--------PKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
|+..+.+++.|+..-|.. .-++..+|++|...|+|++|....++++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 556777888888765532 457888999999999999999999999864
No 300
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=51.55 E-value=97 Score=25.22 Aligned_cols=60 Identities=8% Similarity=-0.077 Sum_probs=41.1
Q ss_pred HHHHHHHHhhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHH
Q psy1039 66 VIEDCSKSLEI-----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV------EPTNKAIQPVLSRLF 125 (206)
Q Consensus 66 A~~~~~~al~l-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~ 125 (206)
++..|++|+.. ...+.-+|..+|..+++.++|.+|...+..+-.. ..++.++...+..+.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIa 353 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVA 353 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHH
Confidence 45556665543 4456778888999999999999999999776553 234555555554443
No 301
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=51.28 E-value=48 Score=27.26 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 63 NDKVIEDCSKSLEIVPDD-----------PKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
|+..+.+++.|+..-|.. .-++..+|++|+..|+|++|....++++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345666777777655432 357788999999999999999999999864
No 302
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=51.23 E-value=82 Score=24.29 Aligned_cols=26 Identities=15% Similarity=-0.219 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1039 80 DPKALFRRCQAYEAIGKFEEAYTDAK 105 (206)
Q Consensus 80 ~~~~~~~la~~~~~~g~~~~A~~~~~ 105 (206)
++..+..+|..+...|++.+|..+|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56678888888888899988888774
No 303
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=51.18 E-value=52 Score=24.29 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=8.2
Q ss_pred cCCHHHHHHHHHHHH
Q psy1039 94 IGKFEEAYTDAKHIH 108 (206)
Q Consensus 94 ~g~~~~A~~~~~~al 108 (206)
+++.++|....++++
T Consensus 186 l~~~~~A~~lAk~af 200 (234)
T 2br9_A 186 LNSPDRACRLAKAAF 200 (234)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 566666555544444
No 304
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=48.73 E-value=95 Score=24.28 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1039 79 DDPKALFRRCQAYEAIGKFEEAYTDA 104 (206)
Q Consensus 79 ~~~~~~~~la~~~~~~g~~~~A~~~~ 104 (206)
.+++.+..+|..+...+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35677888899999999999998887
No 305
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.26 E-value=63 Score=22.08 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=37.3
Q ss_pred HHHHHHHHHHh--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1039 64 DKVIEDCSKSL--EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111 (206)
Q Consensus 64 ~~A~~~~~~al--~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 111 (206)
+++...|..+. .+.-..+..|..-|..+...|++.+|...|+.+++..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34666666655 3444567777788999999999999999999999864
No 306
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=47.79 E-value=36 Score=21.73 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKA 35 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a 35 (206)
++...+..+....+.|+|++|...+..+
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444444444445555555554444443
No 307
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=47.32 E-value=85 Score=23.58 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=7.8
Q ss_pred cCCHHHHHHHHHHHH
Q psy1039 94 IGKFEEAYTDAKHIH 108 (206)
Q Consensus 94 ~g~~~~A~~~~~~al 108 (206)
+++.++|....++++
T Consensus 211 ln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 211 LNEPRAAIDMAKEAF 225 (260)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555544444
No 308
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=47.31 E-value=37 Score=21.58 Aligned_cols=27 Identities=19% Similarity=-0.027 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 48 TCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 48 ~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
.....-|.-..+.|+|++|.+.+.++-
T Consensus 19 rs~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 19 RSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444444445555555555554444
No 309
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.86 E-value=59 Score=21.12 Aligned_cols=60 Identities=10% Similarity=-0.058 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHHHH
Q psy1039 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT----NKAIQPVLSRLFAIVT 129 (206)
Q Consensus 62 ~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~ 129 (206)
.+.+|..+.+++|+++-. |.-...+.-|.+++..+++++.+..+ ....+.....+..++.
T Consensus 18 ~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~ 81 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMK 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 355666666666655431 12222222334445555666666542 2344444444444333
No 310
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=45.43 E-value=83 Score=22.64 Aligned_cols=71 Identities=3% Similarity=-0.194 Sum_probs=42.1
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP 78 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p 78 (206)
+|.-...|...+..+ ..++..++...|.-......+. ..+..|...|..+...|++.+|...|+.+++.+.
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~--~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGT--KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSST--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 344444444444433 2333556666666655543221 1566677778888888888888888888777553
No 311
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=44.68 E-value=73 Score=23.91 Aligned_cols=13 Identities=23% Similarity=0.202 Sum_probs=5.5
Q ss_pred cCCHHHHHHHHHH
Q psy1039 94 IGKFEEAYTDAKH 106 (206)
Q Consensus 94 ~g~~~~A~~~~~~ 106 (206)
+++.++|....++
T Consensus 191 ln~~~~Ac~lAk~ 203 (260)
T 1o9d_A 191 LNSPDRACNLAKQ 203 (260)
T ss_dssp SCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 3444444443333
No 312
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=44.42 E-value=51 Score=19.89 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=5.0
Q ss_pred HccCHHHHHHHH
Q psy1039 59 KQNQNDKVIEDC 70 (206)
Q Consensus 59 ~~~~~~~A~~~~ 70 (206)
+.|+|.+|+.+|
T Consensus 31 ~~g~y~eAl~lY 42 (83)
T 2w2u_A 31 KEGNAEEAITNY 42 (83)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 334444444444
No 313
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=44.26 E-value=77 Score=23.61 Aligned_cols=14 Identities=29% Similarity=0.043 Sum_probs=7.1
Q ss_pred cCCHHHHHHHHHHH
Q psy1039 94 IGKFEEAYTDAKHI 107 (206)
Q Consensus 94 ~g~~~~A~~~~~~a 107 (206)
+++.++|....+++
T Consensus 187 ln~~~~Ac~lAk~A 200 (248)
T 3uzd_A 187 QNAPEQACHLAKTA 200 (248)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 45555555444443
No 314
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=43.25 E-value=72 Score=23.58 Aligned_cols=13 Identities=38% Similarity=0.197 Sum_probs=5.5
Q ss_pred cCCHHHHHHHHHH
Q psy1039 94 IGKFEEAYTDAKH 106 (206)
Q Consensus 94 ~g~~~~A~~~~~~ 106 (206)
+++.++|....++
T Consensus 189 ln~~~~Ac~lAk~ 201 (236)
T 3iqu_A 189 ANSPEEAISLAKT 201 (236)
T ss_dssp SSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 3444444443333
No 315
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=42.88 E-value=47 Score=21.35 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKA 35 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a 35 (206)
++...+..+....+.|+|++|.+.+..+
T Consensus 21 ~Ars~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 21 NARSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444455555555555555555554444
No 316
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=42.72 E-value=84 Score=23.62 Aligned_cols=14 Identities=21% Similarity=0.105 Sum_probs=7.1
Q ss_pred cCCHHHHHHHHHHH
Q psy1039 94 IGKFEEAYTDAKHI 107 (206)
Q Consensus 94 ~g~~~~A~~~~~~a 107 (206)
+++.++|....+++
T Consensus 212 ln~p~~Ac~LAk~A 225 (261)
T 3ubw_A 212 LNSPDRACRLAKAA 225 (261)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 45555555444444
No 317
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=40.31 E-value=96 Score=28.11 Aligned_cols=98 Identities=11% Similarity=-0.066 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAE-------ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p-------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 80 (206)
.+-+++.+|.++...++ +++..+...+.-. . +......+...+|.++.-.++ +++.+.+...+.-+...
T Consensus 412 k~GAllaLGli~ag~~~--~~~~lL~~~L~~~-~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~ 487 (963)
T 4ady_A 412 KGGSLYGLGLIYAGFGR--DTTDYLKNIIVEN-SGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSAT 487 (963)
T ss_dssp HHHHHHHHHHHTTTTTH--HHHHHHHHHHHHH-SSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHhcCCCcH--HHHHHHHHHHcCc-cccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHH
Confidence 45677778887776664 6788777777644 2 112233455677777765554 46677777776543322
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 81 P--KALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 81 ~--~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
. .+-+.+|.++...|+-+-....+..+.+
T Consensus 488 ~~~~AalALGli~vGTgn~~ai~~LL~~~~e 518 (963)
T 4ady_A 488 SGEAAALGMGLCMLGTGKPEAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence 1 3555677788888887666666665554
No 318
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=39.75 E-value=54 Score=21.44 Aligned_cols=27 Identities=4% Similarity=-0.039 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 48 TCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 48 ~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
.....-|.-..+.|+|++|.+.+.++-
T Consensus 38 RS~~~eAl~~Ak~gdfe~A~~~l~eA~ 64 (120)
T 3l8r_A 38 RSIVHEAFDAMREKNYILAEQKLQEAN 64 (120)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444445555555555555444
No 319
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=39.65 E-value=49 Score=20.25 Aligned_cols=26 Identities=12% Similarity=0.209 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYT 33 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~ 33 (206)
.+..++.-|..|+..|++..|+.++.
T Consensus 34 mA~~Y~~Da~~fl~kGD~v~Ala~is 59 (86)
T 2oo2_A 34 NIEAYISDSRYFLEKGDLVRAFECVV 59 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45667777777777777777776543
No 320
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=39.20 E-value=54 Score=20.09 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Q psy1039 9 YNKLKESGNSAFKQGDYETALDF 31 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~ 31 (206)
+..++.-|..|+..|++..|+.+
T Consensus 39 A~~Y~~Da~~fl~kGD~v~Ala~ 61 (87)
T 2pmr_A 39 ALNYRDDSVYYLEKGDHITSFGC 61 (87)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Confidence 44445555555555555555444
No 321
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=38.84 E-value=1.1e+02 Score=22.36 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHH-HHHHccCHHHHHHHHHHHhh
Q psy1039 22 QGDYETALDFYTKALKVTA----EESHERATCLKNRAA-VYLKQNQNDKVIEDCSKSLE 75 (206)
Q Consensus 22 ~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~ 75 (206)
.|+-+.|...|+.|.++.. |.+|....+..|.+. .|..+++.++|.....+|+.
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4455666666666665321 333333333334333 23455666666666666654
No 322
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=38.64 E-value=97 Score=25.52 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 63 NDKVIEDCSKSLEIVPD-----------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
++..+..++.|+..-|. ..-++..+|++++..++|++|....++++..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677777765553 1357888999999999999999999999864
No 323
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=38.21 E-value=65 Score=19.34 Aligned_cols=11 Identities=45% Similarity=0.386 Sum_probs=4.2
Q ss_pred cCCHHHHHHHH
Q psy1039 94 IGKFEEAYTDA 104 (206)
Q Consensus 94 ~g~~~~A~~~~ 104 (206)
.|+|++|+.+|
T Consensus 24 ~g~y~eAl~lY 34 (83)
T 2v6y_A 24 EGKVEDAITYY 34 (83)
T ss_dssp TTCHHHHHHHH
T ss_pred hccHHHHHHHH
Confidence 33433333333
No 324
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=37.88 E-value=52 Score=22.26 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=12.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Q psy1039 50 LKNRAAVYLKQNQNDKVIEDCSKS 73 (206)
Q Consensus 50 ~~~la~~~~~~~~~~~A~~~~~~a 73 (206)
++..|..|..-|+.+.|.-.|-+.
T Consensus 43 llr~A~~y~~egd~e~AYily~R~ 66 (146)
T 2xze_A 43 IIRMASIYSEEGNIEHAFILYNKY 66 (146)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555555555555555555553
No 325
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.42 E-value=63 Score=22.09 Aligned_cols=68 Identities=4% Similarity=-0.088 Sum_probs=48.1
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (206)
Q Consensus 5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 81 (206)
+|.-...|...+.. .+++...|.-...... .. .+..|..-|..+...|++.+|...|+.+++.+..-.
T Consensus 67 D~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~---~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 67 DPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTL---SSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTT---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44444455554443 2336777777776553 33 678888899999999999999999999998876443
No 326
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=37.20 E-value=1.6e+02 Score=23.56 Aligned_cols=95 Identities=12% Similarity=0.033 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHH-HHHH---------------HHHccCHHHHHHHHH
Q psy1039 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKN-RAAV---------------YLKQNQNDKVIEDCS 71 (206)
Q Consensus 8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~-la~~---------------~~~~~~~~~A~~~~~ 71 (206)
.....-.+|.-+...|+...|.-||--+-.++ . ...+|.. +-.. ...+.++-+=...|+
T Consensus 247 f~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~d-k----~v~iW~~~~~~~~~~~~~~~~s~~~~~~~~Lqe~iEkv~vl~ 321 (399)
T 2pm7_A 247 RNEMMIKLGDRMKENGHRQDSLTLYLAAGSLD-K----VASIWLSEFPDLEDKLKKDNKTIYEAHSECMTEFIERFTVFS 321 (399)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHH-H----HHHHHHHSHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhHHHHhhCCHH-H----HHHHHHHhcchhhhccccccCCcccccHHHHHHHHHHHHHHH
Confidence 44555689999999999999999988876554 3 3444533 1100 012222333334455
Q ss_pred HHhhhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039 72 KSLEIV-----PDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (206)
Q Consensus 72 ~al~l~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 107 (206)
.++... |.....+...|.++...|+++.|.++++..
T Consensus 322 ~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~~yL~~l 362 (399)
T 2pm7_A 322 NFINGSSTINNEQLIAKFLEFINLTTSTGNFELATEFLNSL 362 (399)
T ss_dssp TTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 554321 122445667799999999999999998743
No 327
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=36.92 E-value=75 Score=25.41 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHHHHhccc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 28 ALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 28 A~~~~~~al~~~~---p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
++..|.+++.... .+. +.-.|..+|.++++.+++.+|+.....+-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~--HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDH--HIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTC--CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccC--CccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 6667777776431 111 34457778999999999999999887654
No 328
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.56 E-value=1e+02 Score=21.22 Aligned_cols=62 Identities=0% Similarity=-0.183 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------HHHHHH-H--HHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------PKALFR-R--CQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~-l--a~~~~~~g~~~~A~~~~~~al~~ 110 (206)
--+..|..++..|+|-+|=+.++.+-.-.+.. ...+.+ + |..+...|+...|...+.+++..
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44667888889999999999999988776544 223333 3 44567789999999999999873
No 329
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=36.24 E-value=1e+02 Score=23.23 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHhhhCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHh
Q psy1039 62 QNDKVIEDCSKSLEIVPDDPK---ALFRRCQA-YEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 62 ~~~~A~~~~~~al~l~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~ 109 (206)
-|.+|.+....-+++.|.+|- ..++.+.- |.-+++.++|....++++.
T Consensus 174 aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFd 225 (268)
T 3efz_A 174 FYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ 225 (268)
T ss_dssp HHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355555555544433555542 11222222 2235666666655555543
No 330
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=35.92 E-value=41 Score=24.24 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=26.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (206)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 125 (206)
.+....|.|++|.+.+++.+.-+|.+......|..+-
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 5678899999999999999999988888777776554
No 331
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=35.76 E-value=81 Score=25.78 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 63 NDKVIEDCSKSLEIVPD--------DPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
|+..+.+++.|+..-|. ..-++..+|++|+..++|++|....++++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45667777777766553 245788899999999999999999998874
No 332
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=35.59 E-value=97 Score=25.19 Aligned_cols=29 Identities=21% Similarity=0.071 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
-++..+|++++..|+|++|....++++..
T Consensus 198 aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 198 SAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 47778899999999999999999999853
No 333
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=34.58 E-value=83 Score=19.50 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039 97 FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 133 (206)
..++++.....++.+|+||..+..+........-..+
T Consensus 32 ~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RN 68 (92)
T 2g0u_A 32 LNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRN 68 (92)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666788888776666555444443333
No 334
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=40.64 E-value=8.4 Score=33.30 Aligned_cols=52 Identities=12% Similarity=0.094 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1039 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE 99 (206)
Q Consensus 48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~ 99 (206)
......|...+..|+|.-|.+.++.++..+|+|..+...++.+|.++|.-.+
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 4455677777888999999999999999999999999999999999986544
No 335
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.09 E-value=55 Score=21.27 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1039 23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYT 102 (206)
Q Consensus 23 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~ 102 (206)
..|.+|..+..++|.++ .. |.-...+..|.+.+..+.+++.+..+-++ ..-..|++|.+
T Consensus 17 ~~h~~AF~~Is~AL~~D-E~-----------g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~---------~~g~~we~Ar~ 75 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTD-EL-----------GQKEEAKNYYKQGIGHLLRGISISSKESE---------HTGPGWESARQ 75 (116)
T ss_dssp HHHHHHHHHHHHHHHHH-HH-----------TCHHHHHHHHHHHHHHHHHHHSSCCCCTT---------CCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh-hc-----------CCHHHHHHHHHHHHHHHHHhccccccCCC---------CCChhHHHHHH
Confidence 34677888888888876 21 11111222355566667777777654322 12334677766
Q ss_pred HHHHH
Q psy1039 103 DAKHI 107 (206)
Q Consensus 103 ~~~~a 107 (206)
.-.+.
T Consensus 76 lq~KM 80 (116)
T 2dl1_A 76 MQQKM 80 (116)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 336
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=33.09 E-value=88 Score=19.35 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 47 ~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
+.....-|.-+++.++|.+|...|+++.
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~ 80 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKAL 80 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4444455555666666666666666654
No 337
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=32.87 E-value=84 Score=19.08 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039 97 FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (206)
Q Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 131 (206)
..+++..-.+.++.+|+||..+..+........-.
T Consensus 26 ~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eysl~ 60 (85)
T 2ca5_A 26 LQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLY 60 (85)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34445555556667888877766665544443333
No 338
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=32.71 E-value=1.1e+02 Score=24.64 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhccccC-----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039 26 ETALDFYTKALKVTAEE-----SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75 (206)
Q Consensus 26 ~~A~~~~~~al~~~~p~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 75 (206)
+..+.-++.|+..- |. +.....++..+|.+|+.+|+|++|+..+++++.
T Consensus 165 ~~I~~DL~~A~~~L-~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 165 DFIIETLEEAVTLM-SEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHC-CCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 33444455555543 32 122556788899999999999999999999885
No 339
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=32.39 E-value=2.9e+02 Score=25.10 Aligned_cols=61 Identities=8% Similarity=0.018 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
+...+|.++.-.|+ +++++.+...+.-+ .. .....+-+.+|.++.-.|+-+-....+..+.
T Consensus 457 AaLGLGla~~GS~~-eev~e~L~~~L~dd-~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~ 517 (963)
T 4ady_A 457 ASLGIGLAAMGSAN-IEVYEALKEVLYND-SA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ 517 (963)
T ss_dssp HHHHHHHHSTTCCC-HHHHHHHHHHHHTC-CH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHhcC-CH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHh
Confidence 34455555555554 34444444444432 11 0112233445555555554433333333333
No 340
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=32.37 E-value=1.1e+02 Score=24.77 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhhCC-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 63 NDKVIEDCSKSLEIVP-------------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 110 (206)
|+..+.+++.|+.+-| ...-++-.+|+++...|+|++|....++++..
T Consensus 160 y~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 160 YQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455666666654322 22357788899999999999999999999863
No 341
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=32.11 E-value=1.8e+02 Score=22.59 Aligned_cols=106 Identities=13% Similarity=0.123 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-----CcHHHHHH--------HHHHHHHHHHc-cC-----HHHHH
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE-----ESHERATC--------LKNRAAVYLKQ-NQ-----NDKVI 67 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p-----~~~~~~~~--------~~~la~~~~~~-~~-----~~~A~ 67 (206)
+....-...|-.++..|++++|+..|+.++..- | +......+ -+-+|...... .. .++-.
T Consensus 100 ~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i-~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~k 178 (320)
T 3mkr_B 100 NDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSV-PLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQK 178 (320)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHG-GGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-hheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHH
Confidence 345556788999999999999999999999876 5 11011111 22233322111 11 01111
Q ss_pred -----HHHHHHhhhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 68 -----EDCSKSLEIVPDDPKALFRRC-QAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 68 -----~~~~~al~l~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
..|-....+.|.+.-.-++.| ...++.++|..|....++.+++.|.
T Consensus 179 R~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 179 RICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 112222344554443333444 4577889999999999999999876
No 342
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=30.63 E-value=1.3e+02 Score=24.39 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhccccC-----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039 25 YETALDFYTKALKVTAEE-----SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 25 ~~~A~~~~~~al~~~~p~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 76 (206)
|+.-+.-++.|+..- |. +.....++..+|.+|+.+|+|.+|+..+++++..
T Consensus 176 y~~I~~DL~~A~~~L-~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGL-RQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGS-CSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 344455566666654 42 1225567888999999999999999999999864
No 343
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=30.23 E-value=90 Score=18.63 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 85 FRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 85 ~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
..+|+=+..+|+|+.|..+|+.++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4566777777777777777776665
No 344
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=29.87 E-value=1.8e+02 Score=24.33 Aligned_cols=58 Identities=16% Similarity=0.035 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHH-HhhhCCCCHHHH
Q psy1039 26 ETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSK-SLEIVPDDPKAL 84 (206)
Q Consensus 26 ~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~l~p~~~~~~ 84 (206)
++-..+++.++++. ... ..+...+......+..++-|..|++.+-. |-+.||.+....
T Consensus 45 ~~~~~~L~eAl~Lf-~~va~~l~l~~L~~~c~~~~~l~~y~GaVeL~L~~A~~~Dp~~~Al~ 105 (525)
T 3i5p_A 45 DSLNYHLKNATALL-EQIVDDLSIEKLKEAVSMMLSVNYYPKSIEFLLNIANSMDKGKLACQ 105 (525)
T ss_dssp HHHHHHHHHHHC-----------CHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhCCcccHHH
Confidence 34444555555554 210 01122234457788888999999998865 456788875543
No 345
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=29.72 E-value=96 Score=20.92 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 9 YNKLKESGNSAFKQGDYETALDFYTKALK 37 (206)
Q Consensus 9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 37 (206)
+..++..|..|...||.+.|--+|.+-+.
T Consensus 42 a~~L~r~A~~y~~EGd~E~AYilymRy~~ 70 (144)
T 2a9u_A 42 ALKIFKTAEECRLDRDEERAYVLYMKYVT 70 (144)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555556666666666666655555433
No 346
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=29.69 E-value=1.3e+02 Score=24.41 Aligned_cols=48 Identities=8% Similarity=0.170 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhccccC-----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039 27 TALDFYTKALKVTAEE-----SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75 (206)
Q Consensus 27 ~A~~~~~~al~~~~p~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 75 (206)
.-+.-++.|+..- |. +.....++..+|.+|+.+|+|.+|+..+++++.
T Consensus 172 ~I~~DL~~A~~~L-~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 172 EIISDLKNSTELL-SGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHS-CCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3444455555543 32 122566788899999999999999999999885
No 347
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.50 E-value=63 Score=23.67 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=24.7
Q ss_pred HHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCC
Q psy1039 57 YLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK 96 (206)
Q Consensus 57 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~ 96 (206)
..+.|.|++|.+.+++.+.-+|.+......|..+-.....
T Consensus 124 Ciek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 124 CIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Confidence 3566777777777777777666665555555555444433
No 348
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=29.01 E-value=1e+02 Score=18.87 Aligned_cols=11 Identities=0% Similarity=0.075 Sum_probs=4.4
Q ss_pred ccCHHHHHHHH
Q psy1039 60 QNQNDKVIEDC 70 (206)
Q Consensus 60 ~~~~~~A~~~~ 70 (206)
.|+|.+|+..|
T Consensus 28 ~g~y~eAl~~Y 38 (93)
T 1wfd_A 28 ESRYQQALVCY 38 (93)
T ss_dssp TTCHHHHHHHH
T ss_pred hCCHHHHHHHH
Confidence 34444444333
No 349
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=28.96 E-value=45 Score=16.59 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhcc
Q psy1039 25 YETALDFYTKALKVT 39 (206)
Q Consensus 25 ~~~A~~~~~~al~~~ 39 (206)
|++|+..|+.+++.+
T Consensus 18 yDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 18 YDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHhcC
Confidence 788888888888764
No 350
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=28.88 E-value=99 Score=18.67 Aligned_cols=16 Identities=6% Similarity=0.002 Sum_probs=6.6
Q ss_pred HcCCHHHHHHHHHHHH
Q psy1039 93 AIGKFEEAYTDAKHIH 108 (206)
Q Consensus 93 ~~g~~~~A~~~~~~al 108 (206)
..|+|++|+.+|..++
T Consensus 28 ~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 28 SESRYPQALVCYQEGI 43 (86)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3444444444443333
No 351
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=28.76 E-value=1.4e+02 Score=24.41 Aligned_cols=32 Identities=19% Similarity=0.014 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 77 (206)
...++..+|.+|+.+++|.+|+..+++++...
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45678889999999999999999999998653
No 352
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.55 E-value=76 Score=23.24 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCCHHHH---HHHHHHHHhcccc-CcHHHHHHHHHHHHHHHH--ccC--------------HHHHHHH
Q psy1039 10 NKLKESGNSAFKQGDYETA---LDFYTKALKVTAE-ESHERATCLKNRAAVYLK--QNQ--------------NDKVIED 69 (206)
Q Consensus 10 ~~~~~~g~~~~~~g~~~~A---~~~~~~al~~~~p-~~~~~~~~~~~la~~~~~--~~~--------------~~~A~~~ 69 (206)
+.++.-+..+|+.|++.+= ...++..+ .. | +......-...+..|+.+ -|+ .+.|+..
T Consensus 17 Dfyf~~~c~aFR~~r~~dFrq~rdi~eall-~~-~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v 94 (235)
T 3bu8_A 17 KFYFHEALRAFRGSRYGDFRQIRDIMQALL-VR-PLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINV 94 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TS-CCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHH-hC-cccccccchhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHH
Confidence 4456677778888887763 33333333 23 3 110011112223333322 222 4577777
Q ss_pred HHHHhhhCCCCHHH------HH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH-----HHHH
Q psy1039 70 CSKSLEIVPDDPKA------LF--RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM-----QENE 136 (206)
Q Consensus 70 ~~~al~l~p~~~~~------~~--~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-----~~~~ 136 (206)
++..-+-.|-.... +. ..-.+....|.|++|.+.+++.+.-+|.+......|..+-......- -...
T Consensus 95 ~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqnFSy~ 174 (235)
T 3bu8_A 95 LEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNFSYE 174 (235)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHTCCHH
T ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHhccHH
Confidence 77655544422111 11 11234578899999999999999977777666666655543211100 0012
Q ss_pred HHHHHHHHHHHHhcC
Q psy1039 137 QLQNKVHNMFKYVFD 151 (206)
Q Consensus 137 ~~~~~~~~~~~~~~~ 151 (206)
.+.+.+..+++..++
T Consensus 175 ~~~~ki~~fve~~~~ 189 (235)
T 3bu8_A 175 TFQQKMLRFLESHLD 189 (235)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhc
Confidence 344456777777775
No 353
>3ub0_A Non-structural protein 6, NSP6,; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=28.11 E-value=1.6e+02 Score=20.82 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcC
Q psy1039 97 FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN--------EQLQNKVHNMFKYVFD 151 (206)
Q Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 151 (206)
|+.|...|+++...+ ..+.....+.......+...+.+ ++-+.++..+|+.+..
T Consensus 19 YE~A~~~Ye~a~~ng-~~pQ~~Kql~KA~NIAKse~drd~avqrKLerMAe~Amt~MYKeARa 80 (199)
T 3ub0_A 19 YEKARADLEEAKKND-VSPQLLKQLTKACNIAKSEFEREASVQKKLDKMAEQAAASMYKEARA 80 (199)
T ss_dssp HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666665544 33344444433333322222222 2233344566666655
No 354
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=33.64 E-value=13 Score=32.16 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ 133 (206)
Q Consensus 83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 133 (206)
.....|...+..|+|.-|.+....++..+|+|..+...++..+.+++....
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 466678888899999999999999999999999999999999888886544
No 355
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.40 E-value=3.1e+02 Score=23.60 Aligned_cols=98 Identities=7% Similarity=-0.021 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc--------------CHHHHHHHHHHHhhhC
Q psy1039 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--------------QNDKVIEDCSKSLEIV 77 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~--------------~~~~A~~~~~~al~l~ 77 (206)
....|...-..|++++|+.+|..|-+.+ -- -..+-..++.+..... +...-...+.+...-+
T Consensus 446 ~~~aA~~ae~~G~~~dAi~LY~La~~~d-~v---l~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~ 521 (661)
T 2qx5_A 446 TEQAARRADEDGRIYDSILLYQLAEEYD-IV---ITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDN 521 (661)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCHH-HH---HHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhcCHH-HH---HHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcC
Confidence 3556778889999999999998876654 21 1112222454443331 2222222222222222
Q ss_pred --------CCCHHH---HHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039 78 --------PDDPKA---LFRRCQA--YEAIGKFEEAYTDAKHIHRVEPTN 114 (206)
Q Consensus 78 --------p~~~~~---~~~la~~--~~~~g~~~~A~~~~~~al~~~p~~ 114 (206)
+.+..+ +..+... ++..|+|+.|...+++ +.+-|-+
T Consensus 522 ~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 522 AGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred chhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 112222 3333433 4889999999999987 5567765
No 356
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.60 E-value=1e+02 Score=25.05 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=32.9
Q ss_pred HHHHHHHHHhccc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 28 ALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 28 A~~~~~~al~~~~---p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
++..|++|+.... .+ .+.-.|..+|.++++.++|.+|+..+..+-
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~--~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRD--EHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp HHHHHHHHHHHHHHHSTT--CCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--CcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 5667777777431 11 134557778999999999999999998764
No 357
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=24.83 E-value=1.2e+02 Score=19.99 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVT 39 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 39 (206)
..++.+...|..++..|+.-+|-+.+.+|....
T Consensus 5 ~lAe~yL~EA~ell~kGD~vQAsEK~ykAaeea 37 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSKGDLVQACEKYYKAAEEA 37 (129)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 357788999999999999999988888777654
No 358
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=24.67 E-value=2.8e+02 Score=24.57 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=46.8
Q ss_pred HHHHhcCCCCChhhhHHHHhhhhHhccc-chhhHHHHhcchHHHHHHHhcccCChhhhhhh
Q psy1039 145 MFKYVFDTSAPMDKRVTAVNNLVVLARE-MSGAEMLLKSGVAKQINTLLKCETNEEIYLAL 204 (206)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
.+.+.++...+.++.....+.+...-.. .+....+++..+.+++-.++. .+|++.++|+
T Consensus 53 ~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 112 (810)
T 3now_A 53 KVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLD-QKHENCVSTA 112 (810)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH-CCSTTHHHHH
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHHc-CCCHHHHHHH
Confidence 3344444457788888899999888666 467778889999999999999 7999998886
No 359
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.45 E-value=2.5e+02 Score=21.81 Aligned_cols=108 Identities=9% Similarity=0.074 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-----CcHHHHHH--------HHHHHHHHHHc-c-----CHHHH-
Q psy1039 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE-----ESHERATC--------LKNRAAVYLKQ-N-----QNDKV- 66 (206)
Q Consensus 7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p-----~~~~~~~~--------~~~la~~~~~~-~-----~~~~A- 66 (206)
..-......|-.++..|++++|+..|+.++..- | +......+ -|-+|...... . +....
T Consensus 112 ~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i-~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~l 190 (325)
T 3mv2_A 112 DVVNEKMNEGYKNFKLNKPDIAIECFREAIYRI-TLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRML 190 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-heeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 334456678999999999999999999998865 4 11111111 12222222110 0 00111
Q ss_pred -HHHHHHHhhhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039 67 -IEDCSKSLEIVPDDPKALFRRC-QAYEAIGKFEEAYTDAKHIHRVEPTNK 115 (206)
Q Consensus 67 -~~~~~~al~l~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~ 115 (206)
+..|-....+.|.+.-.-++.| ...++.++|..|....++.+++.|..+
T Consensus 191 ELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 191 ELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 1111122333444333333334 457788999999999999999999643
No 360
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=23.92 E-value=85 Score=21.71 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 113 (206)
...|...+..+...+|......-.+..++..+.+....+..|...+..+|.
T Consensus 72 L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 72 IGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 334555566666667766666667777777777776666666666666653
No 361
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=23.55 E-value=1.8e+02 Score=23.99 Aligned_cols=47 Identities=9% Similarity=0.021 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhhCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 63 NDKVIEDCSKSLEIVPD-------------DPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 63 ~~~A~~~~~~al~l~p~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
++..+..++.|+..-|. ..-++..+|.+++..++|++|....+.++.
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34556667777765552 134788899999999999999999999986
No 362
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=22.28 E-value=1.7e+02 Score=19.19 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=27.8
Q ss_pred HHHHHHHccCHHHHHHHHHHH---hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039 53 RAAVYLKQNQNDKVIEDCSKS---LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 53 la~~~~~~~~~~~A~~~~~~a---l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 109 (206)
-+.+++.-++.+..+..+... ++..|.. ..-.+.....-.+..+|...+++...
T Consensus 46 ASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT---~~E~sF~~~fG~~L~~A~~~~~~y~~ 102 (126)
T 2npu_A 46 ASRLYFGERNVKGMFEVLEPLHAMMERGPQT---LKETSFNQAYGRDLMEAQEWCRKYMK 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHccCCCC---HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334555666777766666554 3334433 22233333344455666666666653
No 363
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=21.73 E-value=46 Score=20.54 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHHHhcc
Q psy1039 24 DYETALDFYTKALKVT 39 (206)
Q Consensus 24 ~~~~A~~~~~~al~~~ 39 (206)
.|++|..+..+++..+
T Consensus 12 ~h~~AF~~Is~aL~~D 27 (89)
T 3eab_A 12 FHKQAFEYISIALRID 27 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4566666666666665
No 364
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=21.26 E-value=20 Score=26.94 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039 12 LKESGNSAFKQGDYETALDFYTKALKV 38 (206)
Q Consensus 12 ~~~~g~~~~~~g~~~~A~~~~~~al~~ 38 (206)
+...|..+=+.|+|++|+.+|..++++
T Consensus 26 lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 26 VLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444555555555555555543
No 365
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.14 E-value=1.4e+02 Score=24.31 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHHHHHHHHhccc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039 28 ALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (206)
Q Consensus 28 A~~~~~~al~~~~---p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 74 (206)
++.+|.+++.... .+ .+.-.|..+|.++++.+++.+|+...-.+-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n--~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRD--EHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHHSTT--CCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc--CCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 5566666666431 11 134457778999999999999998876653
No 366
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=20.58 E-value=1.8e+02 Score=18.70 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=8.0
Q ss_pred HcCCHHHHHHHHHHHHh
Q psy1039 93 AIGKFEEAYTDAKHIHR 109 (206)
Q Consensus 93 ~~g~~~~A~~~~~~al~ 109 (206)
..|+|++|+.+|..+++
T Consensus 30 ~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 34555555554444433
No 367
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=20.53 E-value=2.4e+02 Score=23.09 Aligned_cols=31 Identities=16% Similarity=0.405 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (206)
Q Consensus 46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 76 (206)
...++..+|.+|+..++|.+|...+++++..
T Consensus 181 k~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 181 KGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567888999999999999999999999853
Done!