RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1039
(206 letters)
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 133 bits (336), Expect = 3e-40
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+L++ GN FK GDY AL YT+AL + ++A +NRAA +LK DK +
Sbjct: 29 EQLRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKAETE 87
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
SK++E D KAL+RR QA E +G+ ++A D + +EP NK Q L + +
Sbjct: 88 ASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSS 147
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 125 bits (317), Expect = 4e-37
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 18/153 (11%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE--------------RATCLKNRAA 55
L++ GN F Q DY+ A+D Y AL N +
Sbjct: 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQ 71
Query: 56 VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
YL + E S+ L+ + KALFRR +A A K +EA D K + R P
Sbjct: 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131
Query: 116 AIQPVLSRLFAIVTKRMQENEQLQNKV-HNMFK 147
++ ++R IVT+R E + MF+
Sbjct: 132 SV---VAREMKIVTERRAEKKADSRVTYSKMFQ 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 121 bits (306), Expect = 4e-35
Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 19/167 (11%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE------------RATCLKNRAAVY 57
+KE GN FK+ + A+ Y +AL +C N A Y
Sbjct: 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY 98
Query: 58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
K K I+ SK L+I ++ KAL++ A G EEA + + P N I
Sbjct: 99 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
Query: 118 QPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVN 164
+ + + +++E + F +FD +++ + N
Sbjct: 159 R----NSYELCVNKLKEARKKDKL---TFGGMFDKGPLYEEKKNSAN 198
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 119 bits (300), Expect = 1e-34
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 4/145 (2%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+LK N FK DYE A+ FY++A+++ A NR+ YL+ + D
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGD 69
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
++++E+ K +RR + A+GKF A D + + +V+P +K + IV
Sbjct: 70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 129
Query: 130 KRMQENEQLQNKVHNMFKYVFDTSA 154
++ E ++ D +
Sbjct: 130 QKAFERAIAGDEHKRSVVDSLDIES 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 119 bits (301), Expect = 6e-33
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKV-------TAEESHE----RATCLKNRAAVYL 58
+KE G FK+G Y+ AL Y K + + EE+ + R N A +L
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207
Query: 59 KQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
K IE C+K+LE+ ++ K L RR +A+ A+ FE A D + + ++ P NKA +
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267
Query: 119 PVLSRLFAIVTKRMQENEQLQNKVHNMFK 147
L+ + ++ + + NMF+
Sbjct: 268 TQLAVC---QQRIRRQLAREKKLYANMFE 293
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 112 bits (283), Expect = 2e-32
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
N+LKE GN A G+ + AL Y++A+K+ NR+A Y K+ K ED
Sbjct: 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYED 60
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
K++++ PD K R+ A E + +FEEA + + E N ++ L +
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 109 bits (274), Expect = 4e-31
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+ K GN FK+GDY TA+ Y +A+K E A NRAA K + + ++D
Sbjct: 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDD 69
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
C + + K R+ A+ ++ +A + +V+P+N+ + +
Sbjct: 70 CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 108 bits (272), Expect = 1e-30
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+LKE GN F Y A Y +A+ A NRA YLK Q ++ + D
Sbjct: 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALAD 65
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
C ++LE+ KA F Q + ++EA + + + + +
Sbjct: 66 CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 107 bits (269), Expect = 3e-30
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+K GN F++GDY A+ YT+A+K ++ A NRAA Y K + ++D
Sbjct: 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKD 72
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
C + +++ P K R+ A EA+ + +A + ++ + K R
Sbjct: 73 CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 109 bits (273), Expect = 7e-29
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 16/151 (10%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKV---------TAEESHE----RATCLKNRAAV 56
++ K GNS FK+ E A+ Y A+ + + C N AA
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239
Query: 57 YLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
+K + D+ I C+ L +PKALFRR +A +G+ + A D + + P +KA
Sbjct: 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299
Query: 117 IQPVLSRLFAIVTKRMQENEQLQNKVHNMFK 147
I+ L L + ++ + +FK
Sbjct: 300 IRRELRAL---AEQEKALYQKQKEMYKGIFK 327
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 109 bits (274), Expect = 9e-29
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 17/150 (11%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKAL------KVTAEESHE------RATCLKNRAAVY 57
LK GN+ FK ++E A+ YTK L + AE++ +C+ N A
Sbjct: 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 283
Query: 58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
LK + ++ C ++LEI P + KAL+RR Q ++ + ++++A D K + P +KAI
Sbjct: 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343
Query: 118 QPVLSRLFAIVTKRMQENEQLQNKVH-NMF 146
Q L + V ++++ + + + MF
Sbjct: 344 QAELLK----VKQKIKAQKDKEKAAYAKMF 369
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 110 bits (275), Expect = 1e-28
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 16/155 (10%)
Query: 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALK-------VTAEESHE----RATCLKNR 53
+ +KE G FK G Y A+ Y K + ++ +ES N
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
Query: 54 AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113
A YLK + K +E C K+L + + K L+RR +A + +FE A D + + V P
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383
Query: 114 NKAIQPVLSRLFAIVTKRMQENEQLQNKV-HNMFK 147
NKA + ++ K+ +E+ + ++ NMFK
Sbjct: 384 NKAAR----LQISMCQKKAKEHNERDRRIYANMFK 414
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 107 bits (268), Expect = 1e-28
Identities = 33/197 (16%), Positives = 69/197 (35%), Gaps = 11/197 (5%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+LKE GN F Y A Y +A+ A NRA YLK Q ++ + D
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALAD 60
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK-AIQPVLSRLFAIV 128
C ++LE+ KA F Q + ++EA + + + + + + I
Sbjct: 61 CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120
Query: 129 TKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLARE------MSGAEMLLKS 182
K+ + + + + + T +R + + + +++
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180
Query: 183 GVAKQINTLLKCETNEE 199
K + + + + +
Sbjct: 181 KHDKYMADMDELFSQVD 197
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 101 bits (255), Expect = 3e-28
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+ + G F + D+ A+ YT+ +K E+ A NRAA K + I D
Sbjct: 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIAD 60
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
C+K++E P+ +A R+ A A+ ++ A +
Sbjct: 61 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 101 bits (253), Expect = 7e-28
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
+ + +LK GN K ++E A+ FY KA+++ A NRAA Y K
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYA 63
Query: 65 KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
++DC +++ I P KA R A ++ K EA K ++P N+ +
Sbjct: 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYK 117
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 100 bits (250), Expect = 4e-27
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+KLK GN+A + +Y A+D YT+AL + L NRAA Y Q++K ED
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAED 67
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
+ + P KA R A + ++ A + E + + R
Sbjct: 68 AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA--MKRGLETTK 125
Query: 130 KRMQENEQ 137
++++E +
Sbjct: 126 RKIEEANR 133
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 103 bits (259), Expect = 3e-26
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
+LK N FK DYE A+ FY++A+ E + A NR+ YL+ + D
Sbjct: 8 ELKTQANDYFKAKDYENAIKFYSQAI----ELNPSNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
++++E+ K +RR + A+GKF A D + + +V+P +K + IV +
Sbjct: 64 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 123
Query: 131 RMQEN 135
+ E
Sbjct: 124 KAFER 128
Score = 42.7 bits (101), Expect = 3e-05
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDA 104
+RA LK +A Y K + I+ S+++E+ P + R AY + A DA
Sbjct: 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 105 KHIHRVEPTN 114
++
Sbjct: 64 TRAIELDKKY 73
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 89.7 bits (223), Expect = 2e-23
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
K KE GN A+K+ D++TAL Y KA ++ T + N+AAVY ++ +K E
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCREL 60
Query: 70 CSKSLEIVPDDP-------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122
C K++E+ ++ KA R +Y K+++A T +
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL----- 115
Query: 123 RLFAIVTKRMQENEQL 138
+ K ++E E+L
Sbjct: 116 KKCQQAEKILKEQERL 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 89.3 bits (222), Expect = 3e-23
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
+ + K+ GN+A+KQ D+E A Y KA+++ T N+AAVY ++ +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKK 57
Query: 63 NDKVIEDCSKSLEIVPDDP-------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
+ ++ C K++E+ + KA+ R A++ A +
Sbjct: 58 FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117
Query: 116 AIQ 118
++
Sbjct: 118 LVK 120
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 93.2 bits (232), Expect = 2e-22
Identities = 27/120 (22%), Positives = 47/120 (39%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
+ NKL ES + G Y A Y +K + + + K +
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
+ I CS+ L++ PD+ AL R +AY ++EA D + ++ I+ L +
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371
Score = 87.4 bits (217), Expect = 2e-20
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 4/127 (3%)
Query: 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
+ +M D K E G G AL + A+ + RA V+L
Sbjct: 18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAM 73
Query: 61 NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120
++ + D +K +++ D A +R GK +EA D K + + P+ +
Sbjct: 74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
Query: 121 LSRLFAI 127
S+L
Sbjct: 134 QSQLIKS 140
Score = 70.1 bits (172), Expect = 2e-14
Identities = 25/137 (18%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Query: 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
++ +L+ +AF GDY A+ F K L+V + A + RA ++K+ +
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD----AELRELRAECFIKEGEPR 194
Query: 65 KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
K I D + ++ D+ +A ++ Y +G E + ++ + +++ +K ++
Sbjct: 195 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
Query: 125 FAIVTKRMQENEQLQNK 141
+ E +++
Sbjct: 255 KKLNKLIESAEELIRDG 271
Score = 50.1 bits (120), Expect = 1e-07
Identities = 13/134 (9%), Positives = 43/134 (32%), Gaps = 16/134 (11%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
K+G+ A+ A K+ ++ + +Y + ++ + + + L+
Sbjct: 184 AECFIKEGEPRKAISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239
Query: 76 IVPDDPKA------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
+ D + L + G++ +A + + + + EP+
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299
Query: 124 LFAIVTKRMQENEQ 137
+ ++ +
Sbjct: 300 RICHCFSKDEKPVE 313
Score = 50.1 bits (120), Expect = 1e-07
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
+ K A+ ++ L++ E + A LK+RA YL + D+ I+D + E
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQM--EPDNVNA--LKDRAEAYLIEEMYDEAIQDYETAQE 357
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
+D + +A + + ++
Sbjct: 358 HNENDQQIREGLEKAQRLLKQSQKR 382
Score = 37.4 bits (87), Expect = 0.002
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 23/86 (26%)
Query: 52 NRAAVYLKQNQNDKVIED-----------------------CSKSLEIVPDDPKALFRRC 88
+ +N + + D +++ PD+ A +RR
Sbjct: 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA 67
Query: 89 QAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ A+GK + A D + +++
Sbjct: 68 TVFLAMGKSKAALPDLTKVIQLKMDF 93
Score = 33.9 bits (78), Expect = 0.031
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN---DKVI---ED 69
+ + Y+ A+ Y A + E+ ++ +A LKQ+Q K++ +
Sbjct: 336 AEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393
Query: 70 CSK----------SLEIVPDDPKALFRRCQAYEAIGKFEEAY 101
K +L+ PD+ + + +A + A
Sbjct: 394 AKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAK 435
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 85.4 bits (212), Expect = 5e-22
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 10/115 (8%)
Query: 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65
M+ + K KE GNS FKQG Y A+ Y + + + N+A +K + +
Sbjct: 1 MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQ 56
Query: 66 VIEDCSKSLEIVPDDPKALFRR------CQAYEAIGKFEEAYTDAKHIHRVEPTN 114
I+ C + L R A A+G + + + +
Sbjct: 57 AIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 90.4 bits (225), Expect = 7e-22
Identities = 26/115 (22%), Positives = 45/115 (39%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
+ NKL ES + G Y A Y +K + + + K +
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
+ I CS+ L++ PD+ AL R +AY ++EA D + ++ I+
Sbjct: 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343
Score = 81.5 bits (202), Expect = 1e-18
Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 4/128 (3%)
Query: 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVI 67
D K E G G AL + A+ + RA V+L ++ +
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAAL 57
Query: 68 EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127
D +K + + D A +R GK +EA D K + + P+ + + S+L
Sbjct: 58 PDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
Query: 128 VTKRMQEN 135
+ +
Sbjct: 118 DEMQRLRS 125
Score = 67.3 bits (165), Expect = 1e-13
Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Query: 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
++ +L+ AF DY A+ F K L+V + A + RA ++K+ +
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD----AELRELRAECFIKEGEPR 171
Query: 65 KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
K I D + ++ D+ +A ++ Y +G E + ++ + +++ +K ++
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 125 FAIVTKRMQENE 136
+ E
Sbjct: 232 KKLNKLIESAEE 243
Score = 54.2 bits (131), Expect = 4e-09
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
+ K A+ ++ L++ E + A LK+RA YL + D+ I+D + E
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQM--EPDNVNA--LKDRAEAYLIEEMYDEAIQDYEAAQE 334
Query: 76 IVPDDPKALFRRCQAYEAIGKFEE 99
+D + +A + + ++
Sbjct: 335 HNENDQQIREGLEKAQRLLKQSQK 358
Score = 50.3 bits (121), Expect = 8e-08
Identities = 12/134 (8%), Positives = 40/134 (29%), Gaps = 16/134 (11%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
K+G+ A+ A + + + +Y + ++ + + + L+
Sbjct: 161 AECFIKEGEPRKAISDLKAAS----KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216
Query: 76 IVPDDPKALFRRCQ------------AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
+ D + Q G++ +A + + + + EP+
Sbjct: 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKE 276
Query: 124 LFAIVTKRMQENEQ 137
+ ++ +
Sbjct: 277 RICHCFSKDEKPVE 290
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 89.8 bits (223), Expect = 3e-21
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
LK+ GN F+ Y+ A+ +Y AL++ E N +A Y+ KV
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSVGDLKKV 58
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH-RVEPTNKAIQPVLSRLF 125
+E +K+LE+ PD K L RR A E +GKF +A D + + + +I+P+L R
Sbjct: 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118
Query: 126 A 126
Sbjct: 119 N 119
Score = 76.7 bits (189), Expect = 1e-16
Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
L+ +G F + D A + KA+++ R A + +N
Sbjct: 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----FPRVNSYIYMALIMADRN 284
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
+ + K+L++ ++ + R Q + +++A D
Sbjct: 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKD 326
Score = 65.5 bits (160), Expect = 7e-13
Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+ +N Y + + D +++ KALK+ + ++ +R +
Sbjct: 266 LFPRVNSYIYM---ALIMADRNDSTEYYNYFDKALKLDSNN----SSVYYHRGQMNFILQ 318
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
D+ +D K+ E+ P++ + KF++ T
Sbjct: 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL 360
Score = 60.5 bits (147), Expect = 4e-11
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G F +Y+ A + KA E E A + ++N+ D S++
Sbjct: 311 GQMNFILQNYDQAGKDFDKAK----ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
P+ P+ + F++A
Sbjct: 367 KFPEAPEVPNFFAEILTDKNDFDKA 391
Score = 57.8 bits (140), Expect = 3e-10
Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 6/133 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQNQND--KVIEDC 70
+ D++ AL Y A+++ A + + + +
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438
Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS-RLFAIVT 129
K+ ++ P +A Q +EA T + + T + ++ A V
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQ 498
Query: 130 KRMQENEQLQNKV 142
+R++ + L K+
Sbjct: 499 QRIRSDPVLAKKI 511
Score = 52.8 bits (127), Expect = 1e-08
Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 4/103 (3%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
A+++ ++ +++A + E A + +N DK ++ ++E
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPE----APEVPNFFAEILTDKNDFDKALKQYDLAIE 400
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
+ T I KA +
Sbjct: 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443
Score = 40.1 bits (94), Expect = 3e-04
Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 8/121 (6%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK---- 59
+ + S S F E Y ++ + E + + K Y K
Sbjct: 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211
Query: 60 ----QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
++ ++ ++ ++ +L A+ D K + P
Sbjct: 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN 271
Query: 116 A 116
+
Sbjct: 272 S 272
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 84.0 bits (208), Expect = 3e-19
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+LK GN F ++ A+ +Y A+++ E N +A Y+
Sbjct: 18 PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTG 73
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
+KVIE +K+LEI PD KAL RR A E++G F +A D
Sbjct: 74 DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115
Score = 70.5 bits (173), Expect = 1e-14
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
N L +G F + + A +++ + H A +
Sbjct: 236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPTPNSYIFLALTLADKE 290
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ + + K++++ P+ P + R Q Y + ++ A
Sbjct: 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329
Score = 64.7 bits (158), Expect = 1e-12
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+ N Y L + + + + F+ KA+ + E +R +Y
Sbjct: 272 LHPTPNSYIFL---ALTLADKENSQEFFKFFQKAVDLNPEY----PPTYYHRGQMYFILQ 324
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
ED K+ + P++ + GKF E+
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363
Score = 63.2 bits (154), Expect = 4e-12
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82
G + + ++ + A LKNR + ++ I+ ++E+ P++P
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
Y + G E+ KA++
Sbjct: 61 FYSNISACYISTGDLEKVIEFT---------TKALE 87
Score = 57.0 bits (138), Expect = 5e-10
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 4/102 (3%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G F DY+ A + + KA + E A + KQ + + +++
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPEN----VYPYIQLACLLYKQGKFTESEAFFNETKL 372
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
P P+ + G F+ A R+E + I
Sbjct: 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414
Score = 55.5 bits (134), Expect = 2e-09
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 16 GNSAFKQGDYETALDFYTKALKV------------TAEESHERATCLKNRAAVYLKQNQN 63
+GD++TA+ Y A ++ ++ L + +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ I+ +K+ E+ P +A Q + K +EA
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481
Score = 52.8 bits (127), Expect = 2e-08
Identities = 12/103 (11%), Positives = 24/103 (23%), Gaps = 4/103 (3%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
+KQG + + F+ + A + + D I+ +
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLK----FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
+ K + E N AI+
Sbjct: 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449
Score = 50.1 bits (120), Expect = 1e-07
Identities = 14/115 (12%), Positives = 35/115 (30%), Gaps = 3/115 (2%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+ + ++ E +S +Y+TA + AL+ S L + +
Sbjct: 167 LASFFGIFDSHLE-VSSVNTSSNYDTAYALLSDALQ--RLYSATDEGYLVANDLLTKSTD 223
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
++ + + + AL + +A + + PT +
Sbjct: 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNS 278
Score = 48.2 bits (115), Expect = 6e-07
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+ + + + + A+ TKA ++ A + L+
Sbjct: 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS----EQAKIGLAQLKLQME 476
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ D+ IE S + + L + K ++
Sbjct: 477 KIDEAIELFEDSAILARTMDEKLQAT--TFAEAAKIQKR 513
Score = 39.3 bits (92), Expect = 5e-04
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GD E ++F TKAL++ + + L RA+ + D S L
Sbjct: 66 SACYISTGDLEKVIEFTTKALEI----KPDHSKALLRRASANESLGNFTDAMFDLSV-LS 120
Query: 76 IVPD----DPKALFRRCQAYEAIGKFEEA 100
+ D + + R +A+ E
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNEN 149
Score = 27.4 bits (61), Expect = 3.5
Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 7/85 (8%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
++ G++ A+ + + L+ + N+ + +D + +
Sbjct: 100 ASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ 159
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
++P + G F+
Sbjct: 160 VLPSNTS-------LASFFGIFDSH 177
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 77.2 bits (191), Expect = 1e-17
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
N + + G F + D+ A+ YT+ +K E+ A NRAA K
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLM 187
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ I DC+K++E P+ +A R+ A A+ ++ A
Sbjct: 188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226
Score = 73.7 bits (182), Expect = 3e-16
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+K K GN +K ++ A++ Y KA E H+ T L NRAA ++ + + I
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAW-----ELHKDITYLNNRAAAEYEKGEYETAIST 60
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
+ ++E + +++ IG D
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94
Score = 60.6 bits (148), Expect = 2e-11
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 16/117 (13%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
++ + K + E L V E+ A + Y ++
Sbjct: 101 YYQKSLTEHRT---ADILTKLRNAEKELKKAEAEAYVNPEK----AEEARLEGKEYFTKS 153
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
++ ++ ++ P+D + R A + F EA D NKAI+
Sbjct: 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC---------NKAIE 201
Score = 53.3 bits (129), Expect = 6e-09
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+ ++ N + +++G+YETA+ A+ E+ E K + + +
Sbjct: 34 LHKDITYLNNR---AAAEYEKGEYETAISTLNDAV----EQGREMRADYKVISKSFARIG 86
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
+ D K++E R + E+
Sbjct: 87 NAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRNAEKELKK 127
Score = 46.0 bits (110), Expect = 2e-06
Identities = 9/83 (10%), Positives = 23/83 (27%), Gaps = 4/83 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
+ K + A+ KA++ + + RA +A + + +E +
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEK--DPNFVRA--YIRKATAQIAVKEYASALETLDAART 235
Query: 76 IVPDDPKALFRRCQAYEAIGKFE 98
+ R +
Sbjct: 236 KDAEVNNGSSAREIDQLYYKASQ 258
Score = 39.5 bits (93), Expect = 3e-04
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
A K + K Q D+ IE +K+ E+ D L R A G++E A
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETA 57
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 67.8 bits (166), Expect = 6e-15
Identities = 15/121 (12%), Positives = 44/121 (36%), Gaps = 7/121 (5%)
Query: 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
+ + + +L G + ++ G ++ A + H A A
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC----MLDHYDARYFLGLGACRQSL 65
Query: 61 NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA---YTDAKHIHRVEPTNKAI 117
++ ++ S + ++P+ F + + +G + A + A+ + +P ++A+
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 118 Q 118
Sbjct: 126 A 126
Score = 36.6 bits (85), Expect = 0.001
Identities = 6/83 (7%), Positives = 22/83 (26%), Gaps = 4/83 (4%)
Query: 32 YTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY 91
++ + L + + D + + D +
Sbjct: 7 LAMLRGLSEDT----LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACR 62
Query: 92 EAIGKFEEAYTDAKHIHRVEPTN 114
+++G +E+A + ++
Sbjct: 63 QSLGLYEQALQSYSYGALMDINE 85
Score = 30.9 bits (70), Expect = 0.13
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
+ GD + A + A + A + A L RA L+
Sbjct: 93 AECHLQLGDLDGAESGFYSARALAAAQPAHEA--LAARAGAMLEA 135
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 71.0 bits (173), Expect = 9e-15
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 135 NEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKC 194
N + KV M FD + P+DKR A NNLVVLA+E +GAE+L K ++ +L K
Sbjct: 1 NAKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKV 60
Query: 195 ETNEEIYLA 203
E +++IY+
Sbjct: 61 EKDQDIYVN 69
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 61.7 bits (150), Expect = 2e-12
Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 4/121 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ + + + +G E A F+ + AA+Y + Q +
Sbjct: 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----DFYNVDYIMGLAAIYQIKEQFQQA 89
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126
+ + + + +D +F Q + +A + + + K S L A
Sbjct: 90 ADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDA 149
Query: 127 I 127
I
Sbjct: 150 I 150
Score = 37.5 bits (87), Expect = 8e-04
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+ + + + + ++ A D Y A + T + + L+
Sbjct: 63 CIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK----NDYTPVFHTGQCQLRLK 118
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAY 91
K E ++ D+ L + Q+Y
Sbjct: 119 APLKAKECFELVIQHSNDEK--LKIKAQSY 146
Score = 33.6 bits (77), Expect = 0.017
Identities = 9/110 (8%), Positives = 29/110 (26%), Gaps = 10/110 (9%)
Query: 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
N+ + + + A G LK + + + A + + + +
Sbjct: 4 NITENESISTAVIDAINSG----------ATLKDINAIPDDMMDDIYSYAYDFYNKGRIE 53
Query: 65 KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ + + Y+ +F++A + +
Sbjct: 54 EAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 63.1 bits (154), Expect = 3e-12
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 7/100 (7%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
D+ G K+G A+ Y A+ + + +
Sbjct: 72 AKSADFEYY---GKILMKKGQDSLAIQQYQAAVDRDTTR----LDMYGQIGSYFYNKGNF 124
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
I+ K + DPK + QAY ++ +A +
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164
Score = 55.4 bits (134), Expect = 1e-09
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
++ Y ++ G+ + +G++ A+ + K ++ T + Y +
Sbjct: 106 TRLDMYGQI---GSYFYNKGNFPLAIQYMEKQIRPTTTD----PKVFYELGQAYYYNKEY 158
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE 99
K K LE+ P+ R +A A +
Sbjct: 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194
Score = 52.7 bits (127), Expect = 1e-08
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 10/99 (10%)
Query: 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
N + + + FK +Y A++ + K + RA Y + + D
Sbjct: 2 NDDVEFRY---ADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYYELAKYD 54
Query: 65 KVIEDCS---KSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+D + + G+ A
Sbjct: 55 LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLA 93
Score = 48.4 bits (116), Expect = 3e-07
Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 18/123 (14%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
+ + +L G + + +Y A + K L++ RA Q+ +
Sbjct: 140 TDPKVFYEL---GQAYYYNKEYVKADSSFVKVLEL----KPNIYIGYLWRARANAAQDPD 192
Query: 64 DKV---IEDCSKSLEIVPDDPK--------ALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
K K +E+ A Y +A K+I ++P
Sbjct: 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252
Query: 113 TNK 115
TNK
Sbjct: 253 TNK 255
Score = 48.0 bits (115), Expect = 5e-07
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 4/80 (5%)
Query: 21 KQGDYETALDFYTKALKVTAEESHER----ATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
A +Y K ++V A + + A Y K L +
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
Query: 77 VPDDPKALFRRCQAYEAIGK 96
P + KA+ E
Sbjct: 251 DPTNKKAIDGLKMKLEHHHH 270
Score = 44.6 bits (106), Expect = 6e-06
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 52 NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
A K N + IE +K + P RR Y + K++ A D E
Sbjct: 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI------E 61
Query: 112 PTNKAIQ 118
+
Sbjct: 62 TYFSKVN 68
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 62.9 bits (154), Expect = 5e-12
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
++ L + F+ + + F T A+K + A N VY ++
Sbjct: 26 WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERG 81
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
Q + IE +L + PD A A G E A
Sbjct: 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Score = 59.5 bits (145), Expect = 7e-11
Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
+ ++ GD+E A + + + L ++++ + + D+ + +++
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDN----TGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
P +A Y+ G+ +EA +H R++P
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100
Score = 58.7 bits (143), Expect = 1e-10
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
Y L N+ ++G A D Y AL++ A L N A + +Q ++ +
Sbjct: 274 YCNL---ANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEEAVR 326
Query: 69 DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
K+LE+ P+ A + GK +EA
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358
Score = 58.7 bits (143), Expect = 1e-10
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
Y L GN + ++ A+ Y +AL ++ A N A VY +Q D I+
Sbjct: 206 YINL---GNVLKEARIFDRAVAAYLRALSLSPNH----AVVHGNLACVYYEQGLIDLAID 258
Query: 69 DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+++E+ P P A A + G EA
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290
Score = 57.9 bits (141), Expect = 3e-10
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN ++G + A++ Y AL++ + N AA + + ++ +L+
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRL----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
PD +A+G+ EEA
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEA 154
Score = 57.2 bits (139), Expect = 4e-10
Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 16/110 (14%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
+ L GN G E A Y KA++ A N V+ Q + I
Sbjct: 138 RSDL---GNLLKALGRLEEAKACYLKAIETQPNF----AVAWSNLGCVFNAQGEIWLAIH 190
Query: 69 DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
K++ + P+ A + F+ A V +A+
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRA---------VAAYLRALS 231
Score = 51.4 bits (124), Expect = 4e-08
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
N L N +QG+ E A+ Y KAL+V E A N A+V +Q + + +
Sbjct: 308 LNNL---ANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALM 360
Query: 69 DCSKSLEIVPDDPKALFRRCQAYEAIG 95
+++ I P A + +
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 44.1 bits (105), Expect = 1e-05
Identities = 5/49 (10%), Positives = 13/49 (26%)
Query: 52 NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
A + + C + PD+ L + + + +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRS 52
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 62.5 bits (152), Expect = 8e-12
Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
+ L +A +T E+ + + +++ ++
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLT----PEQVVAIASNGGGKQALETVQRLLPVLCQAHG 406
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ P+ A+ +A+ + H + P
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 445
Score = 61.7 bits (150), Expect = 1e-11
Identities = 9/108 (8%), Positives = 27/108 (25%), Gaps = 4/108 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ + L +A +T E + + + +
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE----QVVAIASHDGGKQALETVQAL 159
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ ++ + P+ A+ +A+ + H + P
Sbjct: 160 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207
Score = 60.5 bits (147), Expect = 3e-11
Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G + L +A +T ++ + + +++ ++
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASNGGGKQALETVQRLLPVLCQAHG 270
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ P A+ +A+ + H + P
Sbjct: 271 LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309
Score = 60.5 bits (147), Expect = 3e-11
Identities = 9/99 (9%), Positives = 28/99 (28%), Gaps = 4/99 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G + L +A +T ++ + + +++ ++
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASHDGGKQALETVQRLLPVLCQAHG 372
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ P+ A+ +A+ + H + P
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411
Score = 60.1 bits (146), Expect = 5e-11
Identities = 8/111 (7%), Positives = 27/111 (24%), Gaps = 4/111 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ +G + L +A +T E+ + + ++
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ----VVAIASHDGGKQALETVQRL 431
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
+ ++ + P A+ A+ + + +
Sbjct: 432 LPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482
Score = 60.1 bits (146), Expect = 5e-11
Identities = 9/99 (9%), Positives = 28/99 (28%), Gaps = 4/99 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G + L +A +T ++ + + + +++ ++
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASNSGGKQALETVQRLLPVLCQAHG 304
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ P A+ +A+ + H + P
Sbjct: 305 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343
Score = 59.4 bits (144), Expect = 7e-11
Identities = 9/108 (8%), Positives = 29/108 (26%), Gaps = 4/108 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ +G + L +A +T + + + + ++
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ----QVVAIASNGGGKQALETVQRL 227
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ ++ + P A+ +A+ + H + P
Sbjct: 228 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275
Score = 58.2 bits (141), Expect = 2e-10
Identities = 8/108 (7%), Positives = 28/108 (25%), Gaps = 4/108 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ + + L +A +T ++ + + ++
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASNGGGKQALETVQRL 329
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ ++ + P A+ +A+ + H + P
Sbjct: 330 LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377
Score = 47.1 bits (112), Expect = 1e-06
Identities = 10/108 (9%), Positives = 29/108 (26%), Gaps = 4/108 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
K+ + G + + L +T E+ + + ++
Sbjct: 36 GQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQ----VVAIASHDGGKQALETVQRL 91
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ ++ + P A+ +A+ + H + P
Sbjct: 92 LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 139
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 62.5 bits (152), Expect = 9e-12
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 16 GNSAFKQGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
G AF + D +TA++ + AL + T A N Y K D I+ ++
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541
Query: 73 SLEIVPDDPKALFRRCQAYEAIGKFEEA 100
L + +D Y A
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLA 569
Score = 54.5 bits (131), Expect = 5e-09
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 4/99 (4%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
I+ + L ++ F + + L TK L+ A +
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE----IDPYNLDVYPLHLASLHESG 353
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ +K+ + ++ P+ Y + K EA
Sbjct: 354 EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392
Score = 51.8 bits (124), Expect = 3e-08
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
+ L G++ K Y+ A+D + L ++ + A A VYL + I
Sbjct: 519 WANL---GHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAIT 571
Query: 69 DCSKSLEIVPDDPKALFRRCQAYE 92
+SL I P++ A +A E
Sbjct: 572 HLHESLAISPNEIMASDLLKRALE 595
Score = 51.0 bits (122), Expect = 7e-08
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
+S +G+++ A+ YT A ++ + +++ E S
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARL--FQGTHLP--YLFLGMQHMQLGNILLANEYLQSSYA 469
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
+ DP L + A
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTA 494
Score = 50.6 bits (121), Expect = 9e-08
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 4/113 (3%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+ L + D + Y ++ + + L +A ++
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI----NGLEKSSDLLLCKADTLFVRS 319
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ V+ +K LEI P + + G+ + Y + + P
Sbjct: 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372
Score = 48.7 bits (116), Expect = 4e-07
Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 33/140 (23%)
Query: 16 GNSAFKQGDYETALDFYTKALKV-----------------TAEESHERATCLK------- 51
G +++ A + Y +AL V TA+E + L
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266
Query: 52 ---------NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYT 102
+ ED S+ + L + +F +
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326
Query: 103 DAKHIHRVEPTNKAIQPVLS 122
I ++P N + P+
Sbjct: 327 ITTKILEIDPYNLDVYPLHL 346
Score = 47.5 bits (113), Expect = 9e-07
Identities = 8/85 (9%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G A +++K+ + + A + + ++D+ I + +
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTM----DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
+ + +G A
Sbjct: 436 LFQGTHLPYLFLGMQHMQLGNILLA 460
Score = 46.0 bits (109), Expect = 3e-06
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
N++ Y S + G+ + + E+A YL N+
Sbjct: 337 YNLDVYPLH---LASLHESGEKNKLYLISNDLV----DRHPEKAVTWLAVGIYYLCVNKI 389
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ SKS + P A ++ G+ ++A
Sbjct: 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Score = 45.2 bits (107), Expect = 5e-06
Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 11/92 (11%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G + G+ A ++ + + + L V ++ I +L
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYD----PLLLNELGVVAFNKSDMQTAINHFQNALL 503
Query: 76 IV-------PDDPKALFRRCQAYEAIGKFEEA 100
+V AY + ++ A
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535
Score = 36.7 bits (85), Expect = 0.003
Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 6/98 (6%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
++++ + L+ + A Q Y+ A K L +T + A VY
Sbjct: 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPND-----AFWLAQVYCCTGDY 133
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY 101
+ ++ + + ++ A
Sbjct: 134 ARAKC-LLTKEDLYNRSSACRYLAAFCLVKLYDWQGAL 170
Score = 35.6 bits (82), Expect = 0.008
Identities = 13/102 (12%), Positives = 29/102 (28%), Gaps = 12/102 (11%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLK------------NRAAVYLKQNQN 63
K D++ AL+ + +E + ++ R VY +
Sbjct: 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAK 105
D+ E ++L + +A + + E
Sbjct: 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKL 258
Score = 29.4 bits (66), Expect = 0.84
Identities = 22/127 (17%), Positives = 34/127 (26%), Gaps = 20/127 (15%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVT--------------AEESHERA 47
I N ND L GDY A TK + A
Sbjct: 113 ITGNPNDAFWL---AQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGA 169
Query: 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107
L + K +N + +++ + + R Q Y + F+ A K
Sbjct: 170 LNLLGETNPFRKDEKNANKLLMQDGGIKL---EASMCYLRGQVYTNLSNFDRAKECYKEA 226
Query: 108 HRVEPTN 114
V+
Sbjct: 227 LMVDAKC 233
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 60.1 bits (146), Expect = 1e-11
Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 12/119 (10%)
Query: 8 DYNKLKESGNSAFKQGDYETALDFYTKALKV------------TAEESHERATCLKNRAA 55
+++ + ++A + G A+ ++ + + + + S + A
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 56 VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
Y K DK + L+ P++ L + G+ ++A + I ++E N
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121
Score = 54.8 bits (132), Expect = 1e-09
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 8/114 (7%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRA-AVYLKQNQ 62
NN++ +G + AL Y K L++ A+ YL Q
Sbjct: 86 NNVDCLEAC---AEMQVCRGQEKDALRMYEKILQLEAD----NLAANIFLGNYYYLTAEQ 138
Query: 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
K +E K L A +R + ++E+A + + P+ +A
Sbjct: 139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192
Score = 51.3 bits (123), Expect = 2e-08
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
+ N+ E + K +Y+ A FY + L +++ CL+ A + + +
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL----QKAPNNVDCLEACAEMQVCR 101
Query: 61 NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
Q + K L++ D+ A Y + E+
Sbjct: 102 GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 61.2 bits (149), Expect = 2e-11
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
N L G+ K Y ALD++ +AL + + A+ ++ + ++
Sbjct: 239 LNNL---GHVCRKLKKYAEALDYHRQALVLIPQN----ASTYSAIGYIHSLMGNFENAVD 291
Query: 69 DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDA 104
+L + DD ++ E EAY A
Sbjct: 292 YFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
Score = 60.0 bits (146), Expect = 4e-11
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHER-----ATCLKNRAAVYLKQNQNDKVIEDC 70
G AF+ G+++TA ++ AL+ +E L N V K + + ++
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259
Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
++L ++P + + +G FE A
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENA 289
Score = 49.6 bits (119), Expect = 1e-07
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G+S + +++ A+ Y A ++ + Y N + S++L
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGC----HLPMLYIGLEYGLTNNSKLAERFFSQALS 187
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
I P+DP + G+++ A
Sbjct: 188 IAPEDPFVMHEVGVVAFQNGEWKTA 212
Score = 46.9 bits (112), Expect = 1e-06
Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+D + + + + D++ + + E+ A+CL ++ N
Sbjct: 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM----EKDPFHASCLPVHIGTLVELN 70
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEA 100
+ +++ K +++ P +P + F Y +G E A
Sbjct: 71 KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA 110
Score = 40.7 bits (96), Expect = 1e-04
Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 9/88 (10%)
Query: 16 GNSAFKQG-DYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
G G E A + +KA + T + + ++++D+ +
Sbjct: 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAW------IAYGHSFAVESEHDQAMAAYFT 150
Query: 73 SLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ +++ + Y + A
Sbjct: 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLA 178
Score = 37.3 bits (87), Expect = 0.002
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 32 YTKALKVTAEESHER----ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87
Y K + ES + + + A + + S +E P L
Sbjct: 3 YNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62
Query: 88 CQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ K E + + + + P+N
Sbjct: 63 IGTLVELNKANELFYLSHKLVDLYPSN 89
Score = 34.6 bits (80), Expect = 0.015
Identities = 7/62 (11%), Positives = 22/62 (35%)
Query: 61 NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120
+ N +S++ + ++ + + + F+ Y + +P + + PV
Sbjct: 2 SYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV 61
Query: 121 LS 122
Sbjct: 62 HI 63
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 59.3 bits (144), Expect = 3e-11
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G A + D++ ALD ++ + N +Y + + ++S+
Sbjct: 13 GVLAADKKDWKGALDAFSAVQDPHSR-------ICFNIGCMYTILKNMTEAEKAFTRSIN 65
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
A F+R Y K++ A D K N+ I
Sbjct: 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107
Score = 45.1 bits (107), Expect = 3e-06
Identities = 13/122 (10%), Positives = 39/122 (31%), Gaps = 28/122 (22%)
Query: 6 MNDYNKLKES--------GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY 57
++ ++ +++ G + A +T+++ A R +Y
Sbjct: 26 LDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLY 81
Query: 58 LKQNQNDKVIEDCSKSLEIVPDDP----------------KALFRRCQAYEAIGKFEEAY 101
+ + D I+D ++L + + + L+ Y ++++A
Sbjct: 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141
Query: 102 TD 103
Sbjct: 142 EQ 143
Score = 42.8 bits (101), Expect = 2e-05
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 14/93 (15%)
Query: 16 GNSAFKQGDYETALDFYTKALKV----TAEESHERATCLK--------NRAAVYLKQNQN 63
G ++ Y+ A+ +AL + K N A +Y K+ +
Sbjct: 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK 96
K E + + + + + + A E + K
Sbjct: 138 KKAEEQLALATSMKSEPRHSKIDK--AMECVWK 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 57.1 bits (139), Expect = 4e-11
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
M+D N +Y G + G+Y ++D + KA+++ EE + +
Sbjct: 1 MVDQNPEEYYLE---GVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNL 53
Query: 61 NQNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEA 100
+ ++ ++ + + ++ D + + A I E
Sbjct: 54 ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVE 95
Score = 44.0 bits (105), Expect = 2e-06
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
K G + + YE A+D Y + V +E ++ +A + E
Sbjct: 44 LMK----GKALYNLERYEEAVDCYNYVINVIEDEYNKDV--WAAKADALRYIEGKEVEAE 97
Query: 69 DCSKSLEIVPDD 80
++
Sbjct: 98 IAEARAKLEHHH 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 58.0 bits (140), Expect = 4e-11
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 8/134 (5%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ +L + ++ G YE A + H + A Q D
Sbjct: 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALC----VLDHYDSRFFLGLGACRQAMGQYDLA 74
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR--- 123
I S + +P+ F + G+ EA + + + +R
Sbjct: 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134
Query: 124 -LFAIVTKRMQENE 136
L AI K+ ++E
Sbjct: 135 MLEAIKLKKEMKHE 148
Score = 41.1 bits (96), Expect = 4e-05
Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 6/104 (5%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+ D G G Y+ A+ Y+ + E + A L+
Sbjct: 48 CVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE----PRFPFHAAECLLQXG 103
Query: 62 QNDKVIEDCSKSLEIVPDDPKA--LFRRCQAYEAIGKFEEAYTD 103
+ + + E++ + P+ L R + K ++
Sbjct: 104 ELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKH 147
Score = 40.7 bits (95), Expect = 6e-05
Identities = 7/92 (7%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
Query: 23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82
G + +++++ + L + A + + + D +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQ----LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR 56
Query: 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+A+G+++ A + ++
Sbjct: 57 FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 59.5 bits (144), Expect = 8e-11
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
++ GD + L + + V Q ++ + ++ +
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPG----HPEAVARLGRVRWTQQRHAEAAVLLQQASD 85
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
P+ P A E G+ E A H++ P
Sbjct: 86 AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124
Score = 49.5 bits (118), Expect = 2e-07
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 4/93 (4%)
Query: 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81
D L A++ ++ A L + L + P P
Sbjct: 2 TADGPRELLQLRAAVRHRPQD----FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP 57
Query: 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+A+ R + + EA + P +
Sbjct: 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90
Score = 44.8 bits (106), Expect = 8e-06
Identities = 11/105 (10%), Positives = 30/105 (28%), Gaps = 5/105 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G + Q + A +A E Q + +++ +
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPE----HPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI-HRVEPTNKAIQP 119
++P++P + + + + + V A++P
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 59.4 bits (143), Expect = 1e-10
Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
+ +QG + AL Y +A++++ A N + ++ +++++
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPT----FADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
I P A ++ G EA + +++P
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142
Score = 52.5 bits (125), Expect = 2e-08
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
N +QG+ E A+ Y KAL+V E A N A+V +Q + + + +++
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
I P A + + + A ++ P
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110
Score = 47.9 bits (113), Expect = 7e-07
Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN+ + D + AL YT+A+++ A N A+++ + I +L+
Sbjct: 84 GNTLKEMQDVQGALQCYTRAIQIN----PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139
Query: 76 IVPDDPKALFRRCQAYEAIGKF---EEAYTDAKHI---HRVEPTNKAIQPVLSRLF 125
+ PD P A + + + +E I + ++ P S L+
Sbjct: 140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLY 195
Score = 36.7 bits (84), Expect = 0.004
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
A L N A + +Q ++ + K+LE+ P+ A + GK +EA
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62
Score = 27.1 bits (59), Expect = 4.9
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 78 PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
P +L G EEA + V P
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 42
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 58.5 bits (141), Expect = 2e-10
Identities = 7/108 (6%), Positives = 27/108 (25%), Gaps = 4/108 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ + L +A +T ++ + + ++
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASNGGGKQALETVQRL 686
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ ++ + + A+ +A+ + H + P
Sbjct: 687 LPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734
Score = 58.1 bits (140), Expect = 3e-10
Identities = 8/108 (7%), Positives = 27/108 (25%), Gaps = 4/108 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ + L +A + ++ + + ++
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLP----PDQVVAIASNIGGKQALETVQRL 279
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ ++ + PD A+ +A+ + H + P
Sbjct: 280 LPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327
Score = 57.3 bits (138), Expect = 5e-10
Identities = 9/108 (8%), Positives = 28/108 (25%), Gaps = 4/108 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ + + L +A +T + + + ++
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLT----PAQVVAIASHDGGKQALETMQRL 245
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ ++ + PD A+ +A+ + H + P
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293
Score = 56.2 bits (135), Expect = 1e-09
Identities = 10/108 (9%), Positives = 30/108 (27%), Gaps = 4/108 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ + G + L +A +T ++ + + ++
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASHDGGKQALETVQRL 347
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ ++ + PD A+ +A+ + H + P
Sbjct: 348 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395
Score = 55.8 bits (134), Expect = 2e-09
Identities = 8/99 (8%), Positives = 26/99 (26%), Gaps = 4/99 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G + L +A +T ++ + + +++ ++
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASNGGGKQALETVQRLLPVLCQAHG 593
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ A+ +A+ + H + P
Sbjct: 594 LTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632
Score = 55.4 bits (133), Expect = 2e-09
Identities = 7/99 (7%), Positives = 24/99 (24%), Gaps = 4/99 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
+ L +A + + + + +++ ++
Sbjct: 606 IGGKQALETVQRLLPVLCQAH----GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHG 661
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ PD A+ +A+ + H +
Sbjct: 662 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700
Score = 55.4 bits (133), Expect = 2e-09
Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 4/108 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ + +G + L +A +T E+ + + ++
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLT----QEQVVAIASNNGGKQALETVQRL 720
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ ++ + PD A+ +A+ + H + P
Sbjct: 721 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ 768
Score = 53.1 bits (127), Expect = 1e-08
Identities = 9/108 (8%), Positives = 29/108 (26%), Gaps = 4/108 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ + +G + L +A +T + + + ++
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLT----QVQVVAIASNIGGKQALETVQRL 618
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ ++ + P A+ +A+ + H + P
Sbjct: 619 LPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666
Score = 50.0 bits (119), Expect = 1e-07
Identities = 9/108 (8%), Positives = 29/108 (26%), Gaps = 5/108 (4%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ + + L +A +T ++ + + ++
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ----VVAIASNGGGKQALETVQRL 381
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ ++ + PD A+ +A+ + H + P
Sbjct: 382 LPVLCQAHGLTPDQVVAIASN-GGKQALETVQRLLPVLCQAHGLTPDQ 428
Score = 50.0 bits (119), Expect = 2e-07
Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
+ L +A +T ++ + + +++ ++
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLT----PDQVVAIASNIGGKQALATVQRLLPVLCQAHG 525
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ PD A+ +A+ + H + P
Sbjct: 526 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 564
Score = 48.9 bits (116), Expect = 3e-07
Identities = 8/110 (7%), Positives = 29/110 (26%), Gaps = 4/110 (3%)
Query: 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
+ + + + L +A +T ++ + +
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ----VVAIASNGGGKQALETVQ 548
Query: 65 KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+++ ++ + PD A+ +A+ + H +
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598
Score = 46.6 bits (110), Expect = 2e-06
Identities = 10/110 (9%), Positives = 31/110 (28%), Gaps = 5/110 (4%)
Query: 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
+ + +G + L +A +T ++ + +
Sbjct: 358 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ----VVAIASNGGKQ-ALETVQ 412
Query: 65 KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+++ ++ + PD A+ +A+ + H + P
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462
Score = 45.0 bits (106), Expect = 7e-06
Identities = 8/93 (8%), Positives = 27/93 (29%), Gaps = 4/93 (4%)
Query: 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81
+ L +A +T ++ + + +++ ++ + P
Sbjct: 408 LETVQRLLPVLCQAHGLT----PDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQV 463
Query: 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
A+ +A+ ++ H + P
Sbjct: 464 VAIASHDGGKQALETVQQLLPVLCQAHGLTPDQ 496
Score = 39.2 bits (91), Expect = 5e-04
Identities = 8/94 (8%), Positives = 24/94 (25%), Gaps = 1/94 (1%)
Query: 22 QGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
A+ AL + + + + +++ ++ + P
Sbjct: 166 GVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQ 225
Query: 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
A+ +A+ + H + P
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ 259
Score = 37.7 bits (87), Expect = 0.002
Identities = 8/105 (7%), Positives = 27/105 (25%), Gaps = 4/105 (3%)
Query: 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
+ + + L +A +T ++ + + +++
Sbjct: 806 IASNIGGKQALETVQRLLPVLCQAHGLT----QDQVVAIASNIGGKQALETVQRLLPVLC 861
Query: 72 KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
+ + PD A+ +A+ + H +
Sbjct: 862 QDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVV 906
Score = 36.9 bits (85), Expect = 0.003
Identities = 6/108 (5%), Positives = 25/108 (23%), Gaps = 4/108 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ + + L + + + + + ++
Sbjct: 767 AQVVAIASNIGGKQALETVQRLLPVLCQDH----GLTLAQVVAIASNIGGKQALETVQRL 822
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ ++ + D A+ +A+ + H + P
Sbjct: 823 LPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQ 870
Score = 33.9 bits (77), Expect = 0.034
Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 4/93 (4%)
Query: 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81
+ A + L++ + + R V + + L + P
Sbjct: 137 EALLTDAGELRGPPLQLDTGQ----LVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQV 192
Query: 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
A+ +A+ + H + P
Sbjct: 193 VAIASNNGGKQALETVQRLLPVLCQAHGLTPAQ 225
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 57.7 bits (140), Expect = 2e-10
Identities = 22/97 (22%), Positives = 30/97 (30%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
+ K + E L + L A ERA L R +Y
Sbjct: 3 TSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALA 62
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
D S++L I PD P+ G F+ AY
Sbjct: 63 RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 99
Score = 51.5 bits (124), Expect = 3e-08
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G G A + +++AL + + + D E LE
Sbjct: 50 GVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTD 103
+ P A R A G+ + A D
Sbjct: 106 LDPTYNYAHLNRGIALYYGGRDKLAQDD 133
Score = 48.5 bits (116), Expect = 3e-07
Identities = 9/103 (8%), Positives = 26/103 (25%), Gaps = 4/103 (3%)
Query: 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
D +N ++ + +Q E T + + + YL
Sbjct: 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGD 230
Query: 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAK 105
D ++ + +G+ ++ ++
Sbjct: 231 LDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
Score = 47.3 bits (113), Expect = 7e-07
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
+N L G + G+++ A + + L++ NR ++ +
Sbjct: 80 FNYL---GIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQD 132
Query: 69 DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107
D + P+DP A + + + + +H
Sbjct: 133 DLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 54.7 bits (132), Expect = 3e-10
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Query: 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81
G A+ +Y KA+ + + A C + + + K + ++ P+
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
+G++E+ I ++ IQ
Sbjct: 62 ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98
Score = 35.8 bits (83), Expect = 0.002
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G++ G+Y A + ++ A V + ++ +E K +
Sbjct: 34 GSTFRTLGEYRKAEAVLANGV----KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89
Query: 76 IVPDDP 81
DD
Sbjct: 90 ETSDDE 95
Score = 29.3 bits (66), Expect = 0.41
Identities = 6/65 (9%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 60 QNQNDKVIEDCSKSLEI---VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
+ + K++ D + + +G++ +A + + P ++A
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 117 IQPVL 121
++
Sbjct: 63 LRVFY 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 57.3 bits (139), Expect = 4e-10
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G K GD + F+ A++V E+ + Y + K +E L
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 76 I---VPDDP---KALFRRCQAYEAIGKFEEA 100
+ + D KA + +G F+EA
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106
Score = 53.8 bits (130), Expect = 6e-09
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDKVIEDCSK 72
GN+ G++ETA ++Y K L + A + +R A + Y +K I+ K
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292
Query: 73 SLEI------VPDDPKALFRRCQAYEAIGKFEEA 100
L I + +A + AY A+G ++A
Sbjct: 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326
Score = 52.3 bits (126), Expect = 2e-08
Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
+ L GN+ + G++ A+ + + L + A+E ++ N Y+ + +
Sbjct: 190 FGNL---GNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAERRAYSNLGNAYIFLGEFET 245
Query: 66 VIEDCSKSLEI---VPDDP---KALFRRCQAYEAIGKFEEA 100
E K+L + + D ++ + Y + +E+A
Sbjct: 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286
Score = 51.1 bits (123), Expect = 5e-08
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKV 66
Y++L GN+ F DY AL+++ L + T + A N D+
Sbjct: 50 YSQL---GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106
Query: 67 IEDCSKSLEI 76
I C + L+I
Sbjct: 107 IVCCQRHLDI 116
Score = 49.6 bits (119), Expect = 2e-07
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
L GN+ DYE A+D++ K L + A+E ++R + Y +D+
Sbjct: 270 CYSL---GNTYTLLQDYEKAIDYHLKHLAI-AQELNDRIGEGRACWSLGNAYTALGNHDQ 325
Query: 66 VIEDCSKSLEI 76
+ K LEI
Sbjct: 326 AMHFAEKHLEI 336
Score = 42.3 bits (100), Expect = 5e-05
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 13/118 (11%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQ 60
+ + + A+DFY + L + +R N +
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL-VTALGDRAAQGRAFGNLGNTHYLL 200
Query: 61 NQNDKVIEDCSKSLEI---VPDDP---KALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
+ + L I D +A AY +G+FE A Y + R
Sbjct: 201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258
Score = 40.4 bits (95), Expect = 2e-04
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
L GN+ G+++ A+ + L + + E +++ A L N VY +
Sbjct: 90 SGNL---GNTLKVLGNFDEAIVCCQRHLDI-SRELNDKVGEARALYNLGNVY--HAKGKS 143
Query: 66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ + P++ + + A+ +EE
Sbjct: 144 FGCPGPQDVGEFPEEVRDALQ-----AAVDFYEEN 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 55.0 bits (133), Expect = 9e-10
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 12/106 (11%)
Query: 16 GNSAFKQGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
G G+++ A + + ++ E+ + A V L ++ K
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 73 SLEI---VPDDP---KALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
SL D A + EA + A+ I
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178
Score = 51.5 bits (124), Expect = 1e-08
Identities = 13/106 (12%), Positives = 24/106 (22%), Gaps = 12/106 (11%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKS 73
G ++ A + + + L V D +
Sbjct: 33 GYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92
Query: 74 LEI---VPDDPKALFRRC----QAYEAIGKFEEA---YTDAKHIHR 109
E+ +P+DP A G A Y + +
Sbjct: 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138
Score = 41.1 bits (97), Expect = 6e-05
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQ 62
G+ A ++ + A + +A + AE +S + + +
Sbjct: 154 GDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
Score = 34.6 bits (80), Expect = 0.011
Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 27 TALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---VPDDP 81
A D+ + A +H + VY ++ D+ + D
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 82 ---KALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
+AL + G ++ A + + + +
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLA 97
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 54.1 bits (129), Expect = 1e-09
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 19/146 (13%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE--------RATCLKNRAAVYLKQN 61
G+Y+ A +A++++ E A C A
Sbjct: 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR 71
Query: 62 QNDKVIEDCSKSL-------EIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110
D+ + K+L E+ D+ A++ R A + +G+ EA + K + +
Sbjct: 72 SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131
Query: 111 EPTNKAIQPVLSRLFAIVTKRMQENE 136
K P R+ + R+ +
Sbjct: 132 IEERKGETPGKERMMEVAIDRIAQLG 157
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 55.2 bits (134), Expect = 1e-09
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 3 DNNMNDYNKLKES-GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+ + + GDYE A + +TKA+ EE+ E A N A + N
Sbjct: 16 PRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAI----EENKEDAIPYINFANLLSSVN 71
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ ++ + K+LE+ A + Y ++EA
Sbjct: 72 ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEA 110
Score = 53.7 bits (130), Expect = 4e-09
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
N + E AL FY KAL++ + AT VY+ + + + K+L
Sbjct: 64 ANLLSSVNELERALAFYDKALELDSSA----ATAYYGAGNVYVVKEMYKEAKDMFEKALR 119
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
++ + + + + A
Sbjct: 120 AGMENGDLFYMLGTVLVKLEQPKLA 144
Score = 53.3 bits (129), Expect = 6e-09
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G K + AL + +A+++ + + D+ + + E
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVEL----NENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
P A + Y E+A
Sbjct: 188 QDPGHADAFYNAGVTYAYKENREKA 212
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 54.9 bits (133), Expect = 2e-09
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G K GD + F+ A++V E+ + Y + K +E L
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71
Query: 76 I---VPDDP---KALFRRCQAYEAIGKFEEA 100
+ + D KA + +G F+EA
Sbjct: 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102
Score = 51.1 bits (123), Expect = 4e-08
Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKV 66
+ L GN+ + G++ A+ + + L + E + N Y+ + +
Sbjct: 186 FGNL---GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242
Query: 67 IEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEA 100
E K+L + + ++ + Y + +E+A
Sbjct: 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282
Score = 51.1 bits (123), Expect = 5e-08
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKV 66
Y++L GN+ F DY AL+++ L + T + A N D+
Sbjct: 46 YSQL---GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102
Query: 67 IEDCSKSLEI 76
I C + L+I
Sbjct: 103 IVCCQRHLDI 112
Score = 49.2 bits (118), Expect = 2e-07
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
L GN+ DYE A+D++ K L + A+E +R + Y +D+
Sbjct: 266 CYSL---GNTYTLLQDYEKAIDYHLKHLAI-AQELKDRIGEGRACWSLGNAYTALGNHDQ 321
Query: 66 VIEDCSKSLEI 76
+ K LEI
Sbjct: 322 AMHFAEKHLEI 332
Score = 43.4 bits (103), Expect = 2e-05
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 13/118 (11%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQ 60
+ + + A+D Y + L + +R N +
Sbjct: 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL-VTALGDRAAQGRAFGNLGNTHYLL 196
Query: 61 NQNDKVIEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
+ + L I + +A AY +G+FE A Y + R
Sbjct: 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254
Score = 38.4 bits (90), Expect = 8e-04
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 14/95 (14%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
L GN+ G+++ A+ + L + + E +++ A L N VY +
Sbjct: 86 SGNL---GNTLKVLGNFDEAIVCCQRHLDI-SRELNDKVGEARALYNLGNVY--HAKGKS 139
Query: 66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ P+D + + A+ +EE
Sbjct: 140 FGCPGPQDTGEFPEDVRNALQ-----AAVDLYEEN 169
Score = 31.4 bits (72), Expect = 0.16
Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK----ALFRRCQAYEAIGKFEEA 100
L K + ++++ +D K + AY + + +A
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKA 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 52.5 bits (127), Expect = 6e-09
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 16/116 (13%)
Query: 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
D Y G S K G Y A+ + + Y+K
Sbjct: 5 DIRQVYYRDK---GISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKTGA 57
Query: 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
D+ E +SL PD+ K Y + K++ A V K +
Sbjct: 58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLA---------VPLLIKVAE 104
Score = 49.8 bits (120), Expect = 5e-08
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G + + Y+ A+ K + + D+ I+ +L
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALG 138
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
+ P++ K +YE +G+ EEA
Sbjct: 139 LRPNEGKVHRAIAFSYEQMGRHEEA 163
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 53.9 bits (130), Expect = 6e-09
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 4/102 (3%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+N D+ E G K+GD + F A+ + A + +
Sbjct: 58 TENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEA--WQFLGITQAENE 113
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
I + LE+ P++ KAL +Y ++A
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155
Score = 48.9 bits (117), Expect = 3e-07
Identities = 12/111 (10%), Positives = 34/111 (30%), Gaps = 8/111 (7%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
+ L G + + + + A+ + L++ L A Y + E
Sbjct: 102 WQFL---GITQAENENEQAAIVALQRCLEL----QPNNLKALMALAVSYTNTSHQQDACE 154
Query: 69 DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQ 118
++ P + + + + ++ D+ + V+ +A
Sbjct: 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205
Score = 48.5 bits (116), Expect = 4e-07
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G G++ A+D + AL V E+ + A +++++ +E +++LE
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRALE 275
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
I P ++ + + +G + EA
Sbjct: 276 IQPGFIRSRYNLGISCINLGAYREA 300
Score = 48.5 bits (116), Expect = 4e-07
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 2/97 (2%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
N + S E + Y +A + ++ +
Sbjct: 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD--MIDPDLQTGLGVLFHLSGEF 229
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
++ I+ + +L + P+D R + EEA
Sbjct: 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266
Score = 43.9 bits (104), Expect = 1e-05
Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 1/99 (1%)
Query: 3 DNNMNDYNKL-KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
D ++ ++ + + S ++ + + K E + LK+
Sbjct: 20 DKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEG 79
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
I ++ P D +A + A
Sbjct: 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAA 118
Score = 37.3 bits (87), Expect = 0.002
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
+N+L G + E A++ YT+AL++ + R+ N + + +
Sbjct: 250 WNRL---GATLANGDRSEEAVEAYTRALEI--QPGFIRS--RYNLGISCINLGAYREAVS 302
Query: 69 DCSKSLEIVPDDPKALFRRCQAY 91
+ +L + A
Sbjct: 303 NFLTALSLQRKSRNQQQVPHPAI 325
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 51.8 bits (125), Expect = 7e-09
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
Y+ L GN+ G++ETA ++Y K L + A + +R A + Y +K
Sbjct: 52 YSNL---GNAYIFLGEFETASEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEK 107
Query: 66 VIEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEA 100
I+ K L I + +A + AY A+G ++A
Sbjct: 108 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148
Score = 50.6 bits (122), Expect = 2e-08
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
+ L GN+ + G++ A+ + + L + A+E ++ N Y+ + +
Sbjct: 12 FGNL---GNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAERIAYSNLGNAYIFLGEFET 67
Query: 66 VIEDCSKSLEI 76
E K+L +
Sbjct: 68 ASEYYKKTLLL 78
Score = 48.3 bits (116), Expect = 2e-07
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
L GN+ DYE A+D++ K L + A+E +R + Y +D+
Sbjct: 92 CYSL---GNTYTLLQDYEKAIDYHLKHLAI-AQELKDRIGEGRACWSLGNAYTALGNHDQ 147
Query: 66 VIEDCSKSLEI 76
+ K LEI
Sbjct: 148 AMHFAEKHLEI 158
Score = 26.0 bits (58), Expect = 7.5
Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 15/75 (20%)
Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA---------YEAIGKF 97
N + + + L I + + + Y +G+F
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLI---AKEFGDKAAERIAYSNLGNAYIFLGEF 65
Query: 98 EEA---YTDAKHIHR 109
E A Y + R
Sbjct: 66 ETASEYYKKTLLLAR 80
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 53.5 bits (129), Expect = 7e-09
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G GD + F+ A++ E+ + Y +K ++ L
Sbjct: 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114
Query: 76 I---VPDDP---KALFRRCQAYEAIGKFEEA 100
+ + D K+ + +G+F+EA
Sbjct: 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEA 145
Score = 53.5 bits (129), Expect = 9e-09
Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
L GN+ + GD++ A++ + + L++ A E +R N ++ Q +
Sbjct: 226 CGNL---GNTYYLLGDFQAAIEHHQERLRI-AREFGDRAAERRANSNLGNSHIFLGQFED 281
Query: 66 VIEDCSKSLEI---VPDDP---KALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
E ++L + + + ++ + Y + +F A + I +
Sbjct: 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334
Score = 52.3 bits (126), Expect = 2e-08
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
Y++L GN+ F GDY A+ ++ L + A+ ++R A N + D+
Sbjct: 89 YSQL---GNAYFYLGDYNKAMQYHKHDLTL-AKSMNDRLGEAKSSGNLGNTLKVMGRFDE 144
Query: 66 VIEDCSKSLEI 76
C + L +
Sbjct: 145 AAICCERHLTL 155
Score = 48.5 bits (116), Expect = 4e-07
Identities = 11/71 (15%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
L GN+ ++ TA++++ + L + A+E +R A + + +++
Sbjct: 306 CYSL---GNTYTLLHEFNTAIEYHNRHLAI-AQELGDRIGEARACWSLGNAHSAIGGHER 361
Query: 66 VIEDCSKSLEI 76
++ + L++
Sbjct: 362 ALKYAEQHLQL 372
Score = 45.8 bits (109), Expect = 3e-06
Identities = 9/92 (9%), Positives = 25/92 (27%), Gaps = 6/92 (6%)
Query: 15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATC--LKNRAAVYLKQNQNDKVIEDCSK 72
S+ G + + + + + C L +
Sbjct: 14 ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73
Query: 73 SLEIVPDDPK----ALFRRCQAYEAIGKFEEA 100
+++ +D + + AY +G + +A
Sbjct: 74 AIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKA 105
Score = 45.0 bits (107), Expect = 6e-06
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
L GN+ G ++ A + L + A + +R L N VY + ++
Sbjct: 129 SGNL---GNTLKVMGRFDEAAICCERHLTL-ARQLGDRLSEGRALYNLGNVYHAKGKHLG 184
Query: 66 VIEDCSKSLEIVPDDPKAL 84
++ +A+
Sbjct: 185 QRNPGKFGDDVKEALTRAV 203
Score = 41.5 bits (98), Expect = 8e-05
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 14/119 (11%)
Query: 4 NNMNDYNKLKESGNSAFK-QGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLK 59
+ + + G + A++FY + LK+ + +R N Y
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL-MRDLGDRGAQGRACGNLGNTYYL 235
Query: 60 QNQNDKVIEDCSKSLEIV------PDDPKALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
IE + L I + +A ++ +G+FE+A Y +
Sbjct: 236 LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 52.2 bits (126), Expect = 1e-08
Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 31/128 (24%)
Query: 4 NNM-NDYNKL-KESGNSAFKQGDYETALDFYTKALKV----------------------T 39
+ Y L +++ + +G E AL A +V
Sbjct: 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136
Query: 40 AEESHERATCLK-------NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYE 92
AE S ++A L+ A +YL + D+ + +K+LE P D R A
Sbjct: 137 AEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196
Query: 93 AIGKFEEA 100
GK EEA
Sbjct: 197 LKGKAEEA 204
Score = 44.4 bits (106), Expect = 5e-06
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 15/96 (15%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G + G Y+ AL + +ALK ++ L A LK + +E+ +
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVA 67
Query: 76 IVPDDPKALFRRCQAYEAI-----------GKFEEA 100
P +AY A+ G E+A
Sbjct: 68 RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103
Score = 40.2 bits (95), Expect = 1e-04
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 7/92 (7%)
Query: 16 GNSAFKQGDYETALDFYTKALKVT---AEESHERATCLK----NRAAVYLKQNQNDKVIE 68
+ K G AL+ + T + + ++ +
Sbjct: 46 ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105
Query: 69 DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ + P +R Y +G+ ++A
Sbjct: 106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137
Score = 39.8 bits (94), Expect = 2e-04
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 52 NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
+ D + ++L+ P DP+AL+ + +G A +E
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA---------LE 60
Query: 112 PTNKAIQ 118
+
Sbjct: 61 NGKTLVA 67
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 52.7 bits (127), Expect = 1e-08
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 2/99 (2%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G ++Q YE A +A + T R +N V L+ + + E KSL
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRV--FENLGLVSLQMKKPAQAKEYFEKSLR 169
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ + P ++ A + N
Sbjct: 170 LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208
Score = 50.7 bits (122), Expect = 4e-08
Identities = 10/100 (10%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G + + A +++ K+L++ + + + A + K+ + + +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRL----NRNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
+ ++L + + + A + + R+ P +
Sbjct: 204 GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243
Score = 44.6 bits (106), Expect = 7e-06
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
G ++G+ E A KAL++ ++H A V+ + + E+ K+
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHA------ALAVVFQTEMEPKLADEEYRKA 97
Query: 74 LEIVPDDPKALFRRCQAYEAIGKFEEA 100
L + + L ++EEA
Sbjct: 98 LASDSRNARVLNNYGGFLYEQKRYEEA 124
Score = 39.9 bits (94), Expect = 2e-04
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Query: 17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
+S K K E YL++ ++ K+LEI
Sbjct: 11 SSGLVPRGSHMGDQNPLKTDKGRDEARDAYI----QLGLGYLQRGNTEQAKVPLRKALEI 66
Query: 77 VPDDPKALFRRCQAYEAIGKFEEA 100
P A ++ + + A
Sbjct: 67 DPSSADAHAALAVVFQTEMEPKLA 90
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 52.7 bits (127), Expect = 1e-08
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
+N + D+ + E G ++GD A+ + A++ + + + + Q
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQAENEQ 113
Query: 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
I + LE+ PD+ AL ++ +A
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEI 154
Score = 47.3 bits (113), Expect = 9e-07
Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
S + + + A+++ ++ + DK ++ + +L
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVRLDPT--SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
+ P+D + + EEA
Sbjct: 246 VRPNDYLLWNKLGATLANGNQSEEA 270
Score = 46.6 bits (111), Expect = 2e-06
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G G+Y+ A+D +T AL V + A NQ+++ + ++LE
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGNQSEEAVAAYRRALE 279
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
+ P ++ + + +G EA
Sbjct: 280 LQPGYIRSRYNLGISCINLGAHREA 304
Score = 40.4 bits (95), Expect = 2e-04
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 13/98 (13%)
Query: 16 GNSAFKQGDYETALDFYTKALKV-----------TAEESHERATCLKNRAAVYLKQNQND 64
S + A + L+ K L +
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198
Query: 65 KVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEA 100
+V E ++ + P DP + G++++A
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236
Score = 40.0 bits (94), Expect = 2e-04
Identities = 11/100 (11%), Positives = 25/100 (25%), Gaps = 2/100 (2%)
Query: 3 DNNMNDYNKLKESGNSAFK-QGDY-ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
D + ++ + A DY + Y K + E L++
Sbjct: 18 DKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE 77
Query: 61 NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ +++ P +A + A
Sbjct: 78 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117
Score = 40.0 bits (94), Expect = 2e-04
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 18/103 (17%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
+NKL G + E A+ Y +AL++ + + R+ N + + + +E
Sbjct: 254 WNKL---GATLANGNQSEEAVAAYRRALEL--QPGYIRS--RYNLGISCINLGAHREAVE 306
Query: 69 DCSKSLEIVPDDPKALFRRCQAYEAI-----------GKFEEA 100
++L + E I G+ +
Sbjct: 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349
Score = 38.5 bits (90), Expect = 8e-04
Identities = 11/110 (10%), Positives = 29/110 (26%), Gaps = 8/110 (7%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
+ L G + + A+ + L++ + T L A + ++ + E
Sbjct: 101 WQYL---GTTQAENEQELLAISALRRCLEL----KPDNQTALMALAVSFTNESLQRQACE 153
Query: 69 DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
L P + + G + + + +
Sbjct: 154 ILRDWLRYTPAYAHLVTPAEEGAGGAG-LGPSKRILGSLLSDSLFLEVKE 202
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 52.3 bits (126), Expect = 2e-08
Identities = 12/102 (11%), Positives = 27/102 (26%), Gaps = 4/102 (3%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
+N + E G S K + A + + E A ++ +
Sbjct: 14 ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEA--WRSLGLTQAENE 69
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
++ I + + + P D ++ A
Sbjct: 70 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 111
Score = 49.2 bits (118), Expect = 2e-07
Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 11/96 (11%)
Query: 16 GNSAFKQGDYETALDFYTKALK-----------VTAEESHERATCLKNRAAVYLKQNQND 64
S + + AL L + +++ + N+
Sbjct: 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155
Query: 65 KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ +LE+ P+D + Y ++ A
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
Score = 46.9 bits (112), Expect = 1e-06
Identities = 12/85 (14%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G +Y++A +A+++ ++ A A N+ + ++ +++L+
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDD----AQLWNKLGATLANGNRPQEALDAYNRALD 234
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
I P + ++ +Y + +++ A
Sbjct: 235 INPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 46.5 bits (111), Expect = 2e-06
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
+Y AL++ + A + +Y N D + +++E
Sbjct: 145 DFFFAAPNEYRECRTLLHAALEMNPND----AQLHASLGVLYNLSNNYDSAAANLRRAVE 200
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
+ PDD + + + +EA
Sbjct: 201 LRPDDAQLWNKLGATLANGNRPQEA 225
Score = 38.8 bits (91), Expect = 6e-04
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 19/104 (18%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
+NKL G + + ALD Y +AL + + R + N A Y +Q D +
Sbjct: 209 WNKL---GATLANGNRPQEALDAYNRALDI--NPGYVRV--MYNMAVSYSNMSQYDLAAK 261
Query: 69 DCSKSLEIVPDDPKALFRRCQ------------AYEAIGKFEEA 100
+++ + + + + +
Sbjct: 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 49.7 bits (120), Expect = 3e-08
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLK--------NRAAVYLKQ 60
+ L GN+ +KQGDY+ A+++Y KAL+ L N Y KQ
Sbjct: 4 WYNL---GNAYYKQGDYDEAIEYYQKALE------------LDPRSAEAWYNLGNAYYKQ 48
Query: 61 NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
D+ IE K+LE+ P +A + AY G ++EA
Sbjct: 49 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 88
Score = 37.4 bits (88), Expect = 8e-04
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN+ +KQGDY+ A+++Y KAL++ A N Y KQ D+ IE K+LE
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
Query: 76 IVPD 79
+ P
Sbjct: 132 LDPR 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 48.9 bits (118), Expect = 5e-08
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 20/93 (21%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLK--------NRAAVYLKQNQNDKVI 67
GN+ +KQGDY+ A+++Y KAL+ L N Y KQ D+ I
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALE------------LDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 68 EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
E K+LE+ P++ +A + AY G ++EA
Sbjct: 64 EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 50.3 bits (121), Expect = 6e-08
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
Query: 21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
+ ++ ++ KAL + A N+ KQ Q +SL P
Sbjct: 89 RLNRPAESMAYFDKALADPTYPTPYIA--NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146
Query: 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
P A + G+ +A K +A
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182
Score = 43.0 bits (102), Expect = 2e-05
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
+ DY A ALK + + RA +Y NDK E ++
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWL------VRAEIYQYLKVNDKAQESFRQA 68
Query: 74 LEIVPDDPKALFRRCQA-YEAIGKFEEA 100
L I PD + + + E+
Sbjct: 69 LSIKPDSAEINNNYGWFLCGRLNRPAES 96
Score = 41.5 bits (98), Expect = 6e-05
Identities = 10/61 (16%), Positives = 26/61 (42%)
Query: 40 AEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE 99
AE++++ + A Y++ + +L+ P + A R + Y+ + ++
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60
Query: 100 A 100
A
Sbjct: 61 A 61
Score = 37.6 bits (88), Expect = 0.001
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G + KQG + A + ++L + K A + Q K
Sbjct: 120 GICSAKQGQFGLAEAYLKRSLAAQP----QFPPAFKELARTKMLAGQLGDADYYFKKYQS 175
Query: 76 IVPDD-PKALFRRCQAYEAIGKFEEAYTDAKHI 107
V L + +A+G + AY +
Sbjct: 176 RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 50.6 bits (121), Expect = 7e-08
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKS 73
+ Y+ AL AL++ + ++R A L N A Y + + +E K+
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
Query: 74 LEIVPDD-----PKALFRRCQAYEAIGKFEEA 100
++ + PK LF G+ ++A
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280
Score = 49.8 bits (119), Expect = 1e-07
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQN 61
+ Y L G F Q +Y A+ +Y +A K + E+A A Y
Sbjct: 96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQ-------AYEAIGKFEEA 100
Q + ++L+I + P R Q Y+ +++A
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201
Score = 48.3 bits (115), Expect = 5e-07
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHER-ATCLKNRAAVYLKQNQNDKVIEDCSKSL 74
NS + GD + A++ + KA KV+ E+ + L + K Q K + + L
Sbjct: 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288
Query: 75 EIVPD-DPKALFRRCQAYEAIGKFEEAYTDAK 105
+ + K +A+ K
Sbjct: 289 DHITARSHKFYKELFLFLQAVYKETVDERKIH 320
Score = 26.3 bits (58), Expect = 9.0
Identities = 7/30 (23%), Positives = 8/30 (26%), Gaps = 3/30 (10%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKV 38
+E A FY K LK
Sbjct: 339 ARSA---AAVFESSCHFEQAAAFYRKVLKA 365
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 50.6 bits (121), Expect = 7e-08
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKS 73
+ YE A+ + KA + E + L N Q+Q + I ++
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250
Query: 74 LEI------VPDDPKALFRRCQAYEAIGKFEEA 100
+ + +P P+A F Q + +GK ++A
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283
Score = 48.3 bits (115), Expect = 4e-07
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQN 61
+ +Y G Q +Y +A+ F+ KA ++ E+A + Y
Sbjct: 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK 157
Query: 62 QNDKVIEDCSKSLEIVP--DDPKALFRRCQ-----AYEAIGKFEEA 100
Q ++ ++ EI + +C + + ++E+A
Sbjct: 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDA 203
Score = 45.6 bits (108), Expect = 4e-06
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 13/109 (11%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKS 73
G Q YE A+ ++ +A+ V E + ++ K + DK E SK
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290
Query: 74 LEIVPDDP-----------KALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
+ K+L+ EAI F + +E
Sbjct: 291 MAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLE 339
Score = 39.4 bits (92), Expect = 4e-04
Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 3/89 (3%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
+K G + A ++++K + + + +++ I+ LE
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330
Query: 76 IV---PDDPKALFRRCQAYEAIGKFEEAY 101
D + Y F++A
Sbjct: 331 SKMLYADLEDFAIDVAKYYHERKNFQKAS 359
Score = 26.3 bits (58), Expect = 9.1
Identities = 2/22 (9%), Positives = 10/22 (45%)
Query: 16 GNSAFKQGDYETALDFYTKALK 37
++ +++ A ++ K +
Sbjct: 346 AKYYHERKNFQKASAYFLKVEQ 367
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 48.2 bits (115), Expect = 8e-08
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 4/110 (3%)
Query: 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
+N + E G S K + A + + E R ++ + +
Sbjct: 11 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEK 66
Query: 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
+ I + + + P D ++ A + +P
Sbjct: 67 DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
Score = 29.3 bits (66), Expect = 0.37
Identities = 8/63 (12%), Positives = 15/63 (23%)
Query: 52 NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
LK + + P+ +A K A H ++
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 112 PTN 114
P +
Sbjct: 82 PKD 84
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 48.1 bits (114), Expect = 6e-07
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
N+ + AL Y +A KV + S NRA ++ + + +E S++ +
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKASSN-PDLHLNRATLHKYEESYGEALEGFSQAAAL 287
Query: 77 VPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107
P P+ R Q E + +
Sbjct: 288 DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318
Score = 45.0 bits (106), Expect = 5e-06
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVY-LKQNQNDKVIEDCSKSLEIVPDD 80
Q + E L + L + A L + + + + + SK++++ P+
Sbjct: 81 QEEMEKTLQQMEEVLG----SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL 136
Query: 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
+A + + Y G A+T ++Q
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ 174
Score = 40.4 bits (94), Expect = 2e-04
Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 15/114 (13%)
Query: 16 GNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKN--RAAVYLKQNQNDKVIEDCS 71
G +K+GD +A ++ AL + L+ + +
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203
Query: 72 KSLEIVPDDPKALFRRCQAYEA-----------IGKFEEAYTDAKHIHRVEPTN 114
++++ D ++ + AY + + AY A+ + R +N
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257
Score = 27.3 bits (60), Expect = 4.0
Identities = 7/64 (10%), Positives = 19/64 (29%), Gaps = 8/64 (12%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
N+ + Y AL+ +++A + + ++ ++E
Sbjct: 262 LNR----ATLHKYEESYGEALEGFSQAA----ALDPAWPEPQQREQQLLEFLSRLTSLLE 313
Query: 69 DCSK 72
K
Sbjct: 314 SKGK 317
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 45.0 bits (107), Expect = 7e-07
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
++ QGD E AL + L+ E Y K K + + +
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDE---AYYLMGNAYRKLGDWQKALNNYQSA 61
Query: 74 LEIVPDDPKALFRRCQAYEAIGKFEEAY 101
+E+ PD P QA + + Y
Sbjct: 62 IELNPDSPAL-----QARKMVMDILNFY 84
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 46.8 bits (111), Expect = 1e-06
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 8/98 (8%)
Query: 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIE 68
+ + D A+ Y +A V E R A + + + ++Q + D+
Sbjct: 117 MALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176
Query: 69 DCSKSLEIVPDDP------KALFRRCQAYEAIGKFEEA 100
K + + K + + A
Sbjct: 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214
Score = 39.5 bits (92), Expect = 4e-04
Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 11/103 (10%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKV 66
K +Q ++ A K + E + V L +
Sbjct: 158 IGKA---SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214
Query: 67 IEDCSKSLEIV----PDDPKALFRRCQAYEA--IGKFEEAYTD 103
+ +S I +D AL QAY+ +
Sbjct: 215 QKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCRS 257
Score = 38.3 bits (89), Expect = 9e-04
Identities = 8/70 (11%), Positives = 19/70 (27%), Gaps = 5/70 (7%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKV 66
Y K + E A D Y + + A + + + +
Sbjct: 39 YAKA---AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95
Query: 67 IEDCSKSLEI 76
++ K+ +
Sbjct: 96 VQYIEKASVM 105
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 44.9 bits (106), Expect = 3e-06
Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 7/141 (4%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
N + L G Q DY +L Y +AL++ E+ E L Q+
Sbjct: 42 QNSEQWALL---GEYYLWQNDYSNSLLAYRQALQL-RGENAELYAALATVLYYQASQHMT 97
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
+ K+L + ++ AL + +A + + +
Sbjct: 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR---INRTQL 154
Query: 124 LFAIVTKRMQENEQLQNKVHN 144
+ +I ++ + H+
Sbjct: 155 VESINMAKLLQRRSDLEHHHH 175
Score = 36.0 bits (83), Expect = 0.003
Identities = 4/68 (5%), Positives = 20/68 (29%)
Query: 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109
++ + Q + ++ + P + + + Y + + + +
Sbjct: 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 110 VEPTNKAI 117
+ N +
Sbjct: 73 LRGENAEL 80
Score = 33.3 bits (76), Expect = 0.025
Identities = 9/110 (8%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVI 67
+Y + ++ + Q + E L + + + + YL QN +
Sbjct: 9 EYQRQRDPLHQFASQQNPEAQLQALQDKI----RANPQNSEQWALLGEYYLWQNDYSNSL 64
Query: 68 EDCSKSLEIVPDDPKALFRRCQAYEAIGK---FEEAYTDAKHIHRVEPTN 114
++L++ ++ + + ++
Sbjct: 65 LAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 4e-06
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 31/113 (27%)
Query: 35 ALKVTAEESHERATCLKNRAAVYLKQNQNDK---VIEDCSKSLEIVPDDPKALFRRCQAY 91
L + AE + K DK +IE LE P + + +F R
Sbjct: 329 RLSIIAESIRDGLATWD-----NWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRL--- 378
Query: 92 EAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHN 144
++ F A I PT +LS ++ V K + + NK+H
Sbjct: 379 -SV--FPP---SAH-I----PTI-----LLSLIWFDVIK--SDVMVVVNKLHK 413
Score = 31.0 bits (69), Expect = 0.27
Identities = 36/247 (14%), Positives = 68/247 (27%), Gaps = 55/247 (22%)
Query: 1 MIDN-NMNDYNKLKESGNSAFKQGDYETALDFY-------------TKALKV-----TAE 41
DN + +KL S+ + + T L +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 42 ESHERATCLKNRAAVYLKQNQNDKV-IEDCSKSLEIVPDDPKALFRRC-QAYEAIGKFE- 98
+ L + V KQ + + I L++ ++ AL R Y F+
Sbjct: 403 DVMVVVNKLHKYSLV-EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 99 ----EAYTD-------AKHIHRVEPTNKAIQPVLSRLFA----IVTK--RMQENEQLQNK 141
Y D H+ +E + + +F + K
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERM--TLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 142 VHNMF-------KYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKC 194
+ N Y+ D ++ V A+ + + E L+ S + L
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFL-----PKIEENLICSKYTDLLRIALMA 574
Query: 195 ETNEEIY 201
E +E I+
Sbjct: 575 E-DEAIF 580
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 43.8 bits (103), Expect = 1e-05
Identities = 13/114 (11%), Positives = 37/114 (32%), Gaps = 15/114 (13%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVT---AEESHERATCLKNRAAVYL 58
++ + L+ + ++ + + A++ KAL+ A + C + + +
Sbjct: 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299
Query: 59 KQNQN------------DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+N + K+ E + + + ++EEA
Sbjct: 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353
Score = 40.7 bits (95), Expect = 1e-04
Identities = 14/111 (12%), Positives = 36/111 (32%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
N + L + + A+D +A+++ + + + + + +
Sbjct: 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEE 229
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ + ++LE P L + Y + ++A K P N
Sbjct: 230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280
Score = 40.7 bits (95), Expect = 2e-04
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
+ + +AL+ L++ A Y ++++ DK IE K+LE +P++
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280
Query: 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
+ Y A + + +
Sbjct: 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311
Score = 34.9 bits (80), Expect = 0.012
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 12/123 (9%)
Query: 4 NNMNDYNKLKESGNSA---FKQGDYETALDFYTKALKVTAEES------HERATCLKNRA 54
+ + L GN A + G + K V + S C +
Sbjct: 86 ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145
Query: 55 AVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR---CQAYEAIGKFEEAYTDAKHIHRVE 111
+ NQN++ K+LE P +P+ + + A + R+
Sbjct: 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205
Query: 112 PTN 114
P N
Sbjct: 206 PDN 208
Score = 34.9 bits (80), Expect = 0.014
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 27/121 (22%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
N + L + YE A ++ K ++ L+ +
Sbjct: 332 NLFRVCSIL---ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388
Query: 64 DKVIEDCSKSLEIVPD------------------------DPKALFRRCQAYEAIGKFEE 99
DK I + ++I D +AL E K ++
Sbjct: 389 DKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQ 448
Query: 100 A 100
A
Sbjct: 449 A 449
Score = 33.8 bits (77), Expect = 0.032
Identities = 14/87 (16%), Positives = 22/87 (25%), Gaps = 8/87 (9%)
Query: 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV-----TAEESHERATCLKNRAAVY 57
+ N L +G E AL+ KA ++ + N A VY
Sbjct: 48 EFKATMCNLL---AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY 104
Query: 58 LKQNQNDKVIEDCSKSLEIVPDDPKAL 84
+ V K +
Sbjct: 105 YHMGRLSDVQIYVDKVKHVCEKFSSPY 131
Score = 28.4 bits (63), Expect = 1.7
Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 20/85 (23%)
Query: 20 FKQGDYETALDFYTKALKV--------------------TAEESHERATCLKNRAAVYLK 59
++ + A+ + + +K+ ++ + L A +
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442
Query: 60 QNQNDKVIEDCSKSLEIVPDDPKAL 84
+ + ED + LE P A
Sbjct: 443 NEKMQQADEDSERGLESGSLIPSAS 467
Score = 27.6 bits (61), Expect = 3.6
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALK 37
+ N D L + A + + L+
Sbjct: 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 43.3 bits (103), Expect = 2e-05
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 21 KQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
K+G Y+ A +AL++ + + H + A L N A + Q + ++V ++LEI
Sbjct: 97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156
Query: 77 V-----PDDPKALFRRC---QAYEAIGKFEEA 100
PDDP + Y GK+++A
Sbjct: 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188
Score = 41.0 bits (97), Expect = 9e-05
Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 11/91 (12%)
Query: 21 KQGDYETALDFYTKALKVTAE----ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
KQG Y+ A Y + L E + + + +++
Sbjct: 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSW 240
Query: 76 IV---PDDP---KALFRRCQAYEAIGKFEEA 100
D P L Y GK E A
Sbjct: 241 YKACKVDSPTVNTTLRSLGALYRRQGKLEAA 271
Score = 40.6 bits (96), Expect = 1e-04
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 16 GNSAFKQGDYETALDFYTKAL--KVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
+ + + K +S T L++ A+Y +Q + + +
Sbjct: 219 EEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278
Query: 74 LEI 76
Sbjct: 279 SRN 281
Score = 40.2 bits (95), Expect = 2e-04
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 21 KQGDYETALDFYTKAL----KVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
Q Y+ A AL K ++ A L N A +Y K+ + + C ++LEI
Sbjct: 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114
Query: 77 V-----PDDP---KALFRRCQAYEAIGKFEEA 100
P K L + GK EE
Sbjct: 115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEV 146
Score = 40.2 bits (95), Expect = 2e-04
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 21 KQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
QG E +Y +AL++ A A N A+ YLKQ + + L
Sbjct: 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
Query: 77 V---------PDDPKALFRRCQAYEAIGKFEEA 100
D+ + E+ K ++
Sbjct: 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS 231
Score = 39.8 bits (94), Expect = 2e-04
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 12/97 (12%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCS 71
+ + +A+ +AL+ + H + AT L A VY QN+ + +
Sbjct: 8 HHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLN 67
Query: 72 KSLEIV-----PDDPKALFRRC---QAYEAIGKFEEA 100
+L I D P Y GK++EA
Sbjct: 68 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 42.9 bits (102), Expect = 2e-05
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 21 KQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
K+G Y+ A +AL++ + + H + A L N A + Q + ++V ++LEI
Sbjct: 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182
Query: 77 V-----PDDP---KALFRRCQAYEAIGKFEEA 100
PDDP K Y GKF++A
Sbjct: 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214
Score = 42.9 bits (102), Expect = 3e-05
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 22 QGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77
QG YE +Y +AL++ A N A+ YLKQ + + + L
Sbjct: 166 QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225
Query: 78 ------PDDP---KALFRRCQAYEAIGKFEEA 100
D + E GK ++
Sbjct: 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDG 257
Score = 42.5 bits (101), Expect = 3e-05
Identities = 19/103 (18%), Positives = 26/103 (25%), Gaps = 14/103 (13%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAE----ESH-ERATCLKNRAAVYLKQNQN 63
N L + KQG ++ A Y + L E E + + +
Sbjct: 198 KNNL---ASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254
Query: 64 DKVIEDCSKSLEI---VPDDP---KALFRRCQAYEAIGKFEEA 100
D P L Y GKFE A
Sbjct: 255 KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAA 297
Score = 42.5 bits (101), Expect = 4e-05
Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 15/104 (14%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQND 64
+ L QG YE A+ +AL+ + H + AT L A VY QN+
Sbjct: 30 LHNL---VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86
Query: 65 KVIEDCSKSLEIV-----PDDPKALFRRC---QAYEAIGKFEEA 100
+ +L I D P Y GK++EA
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 130
Score = 39.8 bits (94), Expect = 3e-04
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCS 71
Q Y+ A + AL + + + H A L N A +Y K+ + + C
Sbjct: 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 135
Query: 72 KSLEIV-----PDDP---KALFRRCQAYEAIGKFEEA 100
++LEI D P K L + GK+EE
Sbjct: 136 RALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172
Score = 38.7 bits (91), Expect = 6e-04
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 16 GNSAFKQGDYETALDFYTKAL--KVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
+G + F K +S T LKN A+Y +Q + + +
Sbjct: 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304
Query: 74 LEI 76
+
Sbjct: 305 MRS 307
Score = 32.1 bits (74), Expect = 0.099
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV---- 77
+ Y + E R L N Y Q + + + C ++LE +
Sbjct: 5 HHHSSGRENLYFQGG---GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS 61
Query: 78 -PDDP---KALFRRCQAYEAIGKFEEA 100
D P L Y K+++A
Sbjct: 62 GHDHPDVATMLNILALVYRDQNKYKDA 88
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 40.4 bits (95), Expect = 4e-05
Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 4/75 (5%)
Query: 26 ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85
+ + L + + Y + Q D + +L+ P A
Sbjct: 2 QAITERLEAML----AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWK 57
Query: 86 RRCQAYEAIGKFEEA 100
+ + G A
Sbjct: 58 WLGKTLQGQGDRAGA 72
Score = 32.3 bits (74), Expect = 0.036
Identities = 12/97 (12%), Positives = 21/97 (21%), Gaps = 12/97 (12%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G + + ++ AL AL + K Q + L
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 76 IVPDDPKALFRRCQAYEAIGKFE---EAYTDAKHIHR 109
Q + + F +H H
Sbjct: 82 AAQSRGDQ-----QVVKELQVFLRRLAREDALEHHHH 113
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 39.9 bits (94), Expect = 5e-05
Identities = 12/102 (11%), Positives = 33/102 (32%), Gaps = 13/102 (12%)
Query: 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQN 61
+ L K + AL + + ++ + ++ + +Y + +
Sbjct: 5 EDPFTRYAL---AQEHLKHDNASRALALFEELVETDPDYVGTY------YHLGKLYERLD 55
Query: 62 QNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEAY 101
+ D I+ ++ +E+ + K L A E +
Sbjct: 56 RTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97
Score = 25.3 bits (56), Expect = 6.4
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 78 PDDPKALFRRCQAYEAIGKFEEA 100
P+DP + Q + A
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRA 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 40.9 bits (95), Expect = 1e-04
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
+ A + A + + ++ L +AA ++ Q + + ++L+
Sbjct: 174 SLAAGGEKLQDAYYIFQEMA----DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229
Query: 77 VPDDPKALFRRCQAYEAIGKFEEA 100
P+ L + +GK E
Sbjct: 230 DSGHPETLINLVVLSQHLGKPPEV 253
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/122 (9%), Positives = 31/122 (25%), Gaps = 2/122 (1%)
Query: 20 FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD 79
K + A K +E ++ + + +
Sbjct: 141 LKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP 198
Query: 80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQ 139
L + + A G++E A + + + L L + K + +
Sbjct: 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258
Query: 140 NK 141
++
Sbjct: 259 SQ 260
Score = 37.8 bits (87), Expect = 0.001
Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 11/115 (9%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
++ + L + + F + + AL + C+ + LK +
Sbjct: 94 RSVDVTNTTFLLMAASIYFYDQNPDAALRTL---------HQGDSLECMAMTVQILLKLD 144
Query: 62 QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG--KFEEAYTDAKHIHRVEPTN 114
+ D ++ K + D A G K ++AY + +
Sbjct: 145 RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199
Score = 30.9 bits (69), Expect = 0.28
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77
+AF G Y+ ++ + + E ER RA YL Q + V+++ S
Sbjct: 8 NAFYIGSYQQCINEAQRVKPSSPERDVERD-VFLYRA--YLAQRKYGVVLDEIKPS---S 61
Query: 78 PDDPKALFRRCQAYEAIGKFEEAYTDAK 105
+ +A+ + + + + +
Sbjct: 62 APELQAVRMFAEYLASHSRRDAIVAELD 89
Score = 30.1 bits (67), Expect = 0.51
Identities = 12/127 (9%), Positives = 41/127 (32%), Gaps = 8/127 (6%)
Query: 21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
+ + + + + + ++ T L A++Y D + + D
Sbjct: 77 SHSRRDAIVAELDREMSRSVDVTN--TTFLLMAASIYFYDQNPDAALRTLHQ-----GDS 129
Query: 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR-LFAIVTKRMQENEQLQ 139
+ + Q + + + A + K + + Q + A +++Q+ +
Sbjct: 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189
Query: 140 NKVHNMF 146
++ +
Sbjct: 190 QEMADKC 196
Score = 27.8 bits (61), Expect = 2.2
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 9/86 (10%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL- 74
QG +E A +AL ++ L N + + +V L
Sbjct: 207 AACHMAQGRWEAAEGVLQEAL----DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262
Query: 75 EIVPDDPKALFRRCQAYEAIGKFEEA 100
+ P + F+
Sbjct: 263 DAHRSHPFIK----EYRAKENDFDRL 284
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 38.1 bits (90), Expect = 2e-04
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 23/83 (27%)
Query: 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLK--------NRAAVYLKQ 60
+ L GN+ +KQGDY+ A+++Y KAL+ L N Y KQ
Sbjct: 12 WYNL---GNAYYKQGDYDEAIEYYQKALE------------LDPNNAEAWYNLGNAYYKQ 56
Query: 61 NQNDKVIEDCSKSLEIVPDDPKA 83
D+ IE K+LE+ P++ +A
Sbjct: 57 GDYDEAIEYYQKALELDPNNAEA 79
Score = 36.6 bits (86), Expect = 7e-04
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 52 NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
N Y KQ D+ IE K+LE+ P++ +A + AY G ++EA
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 7e-04
Identities = 38/237 (16%), Positives = 65/237 (27%), Gaps = 72/237 (30%)
Query: 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK---VIEDCSKSL---- 74
G E L T A A + + K +D+ E K L
Sbjct: 13 HGSLEHVLLVPT-ASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV------------------------ 110
+V F + + +FE Y + IH +
Sbjct: 70 SLVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 111 ------EPTNKAIQPVL--------SRLFAI------VTKRMQENEQLQNKVHNMFKYVF 150
P +K L ++L AI +E L++ ++
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE---LRD--------LY 177
Query: 151 DTSAPMDKRV--TAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETN--EEIYLA 203
T + + + L L R AE + G+ I L+ +N ++ YL
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLENPSNTPDKDYLL 232
Score = 35.4 bits (81), Expect = 0.010
Identities = 42/204 (20%), Positives = 63/204 (30%), Gaps = 71/204 (34%)
Query: 22 QGDYET--ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD 79
QG E +D Y ++ + A + NRA + K + L+IV +
Sbjct: 1624 QGSQEQGMGMDLY---------KTSKAAQDVWNRADNHFKDTYGFSI-------LDIVIN 1667
Query: 80 DPKAL---F-----RRC-QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL-F---- 125
+P L F +R + Y A+ F E D K + E K I + F
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAM-IF-ETIVDGK--LKTEKIFKEINEHSTSYTFRSEK 1723
Query: 126 -----------AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRV--------TAVNNL 166
A+ E L++K P D A L
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSK----------GLIPADATFAGHSLGEYAA---L 1770
Query: 167 VVLAREMS---GAEMLLKSGVAKQ 187
LA MS E++ G+ Q
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQ 1794
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 38.5 bits (89), Expect = 7e-04
Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 4/93 (4%)
Query: 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81
Q D +++ T + EE + +R + + +E + L +
Sbjct: 145 QKDLHEEMNYITAII----EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 200
Query: 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
A R + ++ + + + N
Sbjct: 201 HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233
Score = 37.4 bits (86), Expect = 0.002
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 4/100 (4%)
Query: 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
+I+ +Y D L+F L A+ H ++R V +
Sbjct: 158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH----AWQHRQWVIQEF 213
Query: 61 NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
D ++ + L+ + +R + +
Sbjct: 214 KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253
Score = 31.2 bits (70), Expect = 0.24
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN-DKVIEDCSKSLEIVPD 79
+ E A A+++ A T R + ++ + + + +E P
Sbjct: 109 RDERSERAFKLTRDAIELNAAN----YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 164
Query: 80 DPKALFRRCQAYEAIGKFEEA 100
+ + R E + +
Sbjct: 165 NYQVWHHRRVLVEWLRDPSQE 185
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 38.0 bits (88), Expect = 0.001
Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 19 AFKQGDYETALDFYTKALKVTAEESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77
A G+ + A AL+ R V + + + + ++ ++
Sbjct: 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 83
Query: 78 PDDPK------ALFRRCQAYEAIGKFEEAY 101
+L ++ + A G + A+
Sbjct: 84 RQHDVWHYALWSLIQQSEILFAQGFLQTAW 113
Score = 36.9 bits (85), Expect = 0.003
Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 9/133 (6%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHER----ATCLKNRAAVYLKQNQNDKVIEDCS 71
F QG +TA + KA ++ E+ E+ ++ RA + + D+
Sbjct: 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 159
Query: 72 KSLEIV-----PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126
+E++ + L Q A G + A + + + K +S
Sbjct: 160 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219
Query: 127 IVTKRMQENEQLQ 139
+ Q
Sbjct: 220 VRVIYWQMTGDKA 232
Score = 36.9 bits (85), Expect = 0.003
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 10/95 (10%)
Query: 16 GNSAFKQGDYETALDFYTKALKVT--AEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
G +G+ +L + ++ + H L ++ + Q E K+
Sbjct: 60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119
Query: 74 LEIVPDDP--------KALFRRCQAYEAIGKFEEA 100
+++ + + R Q A + +EA
Sbjct: 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154
Score = 36.5 bits (84), Expect = 0.004
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Query: 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----- 76
GD A ++ K +H +N A + + + + E
Sbjct: 228 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR 287
Query: 77 -VPDDPKALFRRCQAYEAIGKFEEA 100
+ D + L Q Y G+ +A
Sbjct: 288 LMSDLNRNLLLLNQLYWQAGRKSDA 312
Score = 32.3 bits (73), Expect = 0.087
Identities = 23/153 (15%), Positives = 38/153 (24%), Gaps = 15/153 (9%)
Query: 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----PKALFRRCQAYEAIGKFEEA 100
A RA V + D+ +LE +P A + G+ +
Sbjct: 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 72
Query: 101 ---YTDAKHIHRVEPTNKAIQPVLSRL--FAIVTKRMQENEQLQNKVHNMFKYVFDTSAP 155
+ + R L + +Q + Q K + P
Sbjct: 73 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132
Query: 156 MDKRVTAVNNLVVLAREM---SGAEMLLKSGVA 185
M V L AE +SG+
Sbjct: 133 M--HEFLVRIRAQLLWAWARLDEAEASARSGIE 163
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 37.8 bits (87), Expect = 0.001
Identities = 10/112 (8%), Positives = 30/112 (26%), Gaps = 3/112 (2%)
Query: 14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
+ + + + + +A L + + D+ + +
Sbjct: 246 RHSQHPLDEKQLAALNTEIDNIVTLPELNNLSII--YQIKAVSALVKGKTDESYQAINTG 303
Query: 74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125
+++ + YE G EA + P + + + +F
Sbjct: 304 IDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354
Score = 28.5 bits (63), Expect = 1.3
Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 9/107 (8%)
Query: 16 GNSAFKQGD---YETALDFYTKALKVT---AEESHERATCLKNRAAVY-LKQNQNDKVIE 68
+ GD A + + ++ + E+A R + + L + Q +
Sbjct: 203 AHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262
Query: 69 DCSKSLEIVPDDPKALFRRCQA--YEAIGKFEEAYTDAKHIHRVEPT 113
+ + + + ++ + +A GK +E+Y +E +
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 37.3 bits (86), Expect = 0.002
Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 3/92 (3%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKVI 67
+ ++ + + A D + KA A E + + +
Sbjct: 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97
Query: 68 EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE 99
+ +++I + R +G+ E
Sbjct: 98 DSLENAIQIFTHRGQ-FRRGANFKFELGEILE 128
Score = 31.1 bits (70), Expect = 0.19
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 9/89 (10%)
Query: 21 KQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP 78
DY A+D Y A + A++ C A + Q + + SK ++
Sbjct: 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189
Query: 79 DDP-------KALFRRCQAYEAIGKFEEA 100
+ ++ A A
Sbjct: 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAA 218
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 34.8 bits (79), Expect = 0.015
Identities = 13/107 (12%), Positives = 34/107 (31%), Gaps = 9/107 (8%)
Query: 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLK---NRAAVYLK 59
+ + N + G + +D + + LK +K N A
Sbjct: 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208
Query: 60 QNQNDKVIEDCSKSLEIVPDD------PKALFRRCQAYEAIGKFEEA 100
++ ++ + +K++EI + ++R + + E
Sbjct: 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255
Score = 31.3 bits (70), Expect = 0.18
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 20 FKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77
K+ DYE + K L ++ A +Y + K I+ + L+ +
Sbjct: 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185
Query: 78 PDDP-------KALFRRCQAYEAIGKFEEAY 101
K + +A ++EE+
Sbjct: 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESL 216
Score = 30.5 bits (68), Expect = 0.29
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEE--SHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
+ + YE +L KA++++ R K + IED K
Sbjct: 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.061
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 134 ENEQLQNKVHNMFK-YVFDTSAPMDKRVTAVN 164
E + L+ K+ K Y D SAP A+
Sbjct: 18 EKQALK-KLQASLKLYA-DDSAP----ALAIK 43
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 32.5 bits (74), Expect = 0.082
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77
+ E A + ++ R L + + L Q + I+ + +
Sbjct: 160 TLIALNRSEDAEAVLXT---IPLQDQDTRYQGLVAQIEL-LXQAADTPEIQQLQQQVAEN 215
Query: 78 PDDPKALFRRCQAYEAIGKFEEA 100
P+D + +G+ EEA
Sbjct: 216 PEDAALATQLALQLHQVGRNEEA 238
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum,
metal-binding, oxidoreductase; 2.03A {Homo sapiens}
PDB: 1tjc_A
Length = 104
Score = 30.3 bits (68), Expect = 0.15
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
G A+ + DY + +AL+ E + ++ + L + +Q DK + K
Sbjct: 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71
Query: 73 SLEIVPDDPKAL 84
LE+ P+ +A
Sbjct: 72 LLELDPEHQRAN 83
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 30.5 bits (68), Expect = 0.24
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 27/124 (21%)
Query: 18 SAFKQGDYETALDFYTKALKVTAEESHER----ATCLKNRAAVYLKQNQN---------- 63
S + +++ L + + + AE +++ A L V L+ +Q
Sbjct: 5 SMDTETEFDRIL-LFEQIRQ-DAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMI 62
Query: 64 DKVIEDCSKSLEIVPDDPKALFRRCQAY-----------EAIGKFEEAYTDAKHIHRVEP 112
+ I ++L I P +A++ AY EA F+ A + +P
Sbjct: 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122
Query: 113 TNKA 116
N
Sbjct: 123 DNTH 126
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 30.3 bits (68), Expect = 0.27
Identities = 12/130 (9%), Positives = 33/130 (25%), Gaps = 7/130 (5%)
Query: 52 NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
+ + L+Q ++ + + + + + +FE A I
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70
Query: 112 PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAR 171
N + E ++L+ ++ + + R
Sbjct: 71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDN-------FELACELAVQYNQVGR 123
Query: 172 EMSGAEMLLK 181
+ E+L
Sbjct: 124 DEEALELLWN 133
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 28.7 bits (64), Expect = 0.52
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERA 47
N F ++ A+D + L
Sbjct: 50 ANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT 81
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 26.8 bits (59), Expect = 1.9
Identities = 6/44 (13%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 21 KQGDYETALDFYTKALK-----VTAEESHERATCLKNRAAVYLK 59
+ Y+ AL Y + + + + + L+ + + Y+
Sbjct: 27 AESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMD 70
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 28.0 bits (62), Expect = 2.0
Identities = 12/73 (16%), Positives = 23/73 (31%)
Query: 52 NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
+ L + Q + +E ++++ P D + G FE A ++
Sbjct: 2 TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61
Query: 112 PTNKAIQPVLSRL 124
P L L
Sbjct: 62 PEYLPGASQLRHL 74
>1xrk_A Bleomycin resistance protein; arm exchange, ligand binding protein,
thermostable mutant, antibiotic inhibitor; HET: BLM;
1.50A {Streptoalloteichus hindustanus} SCOP: d.32.1.2
PDB: 2zhp_A* 1byl_A
Length = 124
Score = 27.2 bits (60), Expect = 2.4
Identities = 11/93 (11%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 24 DYETALDFYTKALKVTAEESHERATCLK-NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82
D A++F+T L + + + + +++ Q+ V ++ + +
Sbjct: 15 DVAEAVEFWTDRLGFSRVFVEDDFAGVVRDDVTLFISAVQDQVVPDNTQAWVWV--RGLD 72
Query: 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
L+ + + DA E +
Sbjct: 73 ELYAEWSEVVS-----TNFRDASGPAMTEIVEQ 100
>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding
protein; 1.80A {Streptococcus mutans}
Length = 134
Score = 26.6 bits (59), Expect = 4.2
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 24 DYETALDFYTKAL 36
DY+ + +FY L
Sbjct: 15 DYDKSYEFYVNQL 27
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 26.2 bits (58), Expect = 4.7
Identities = 15/90 (16%), Positives = 21/90 (23%), Gaps = 4/90 (4%)
Query: 14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
A K G Y+ A + L+ L Y
Sbjct: 7 NVAFDALKNGKYDDASQLFLSFLE-LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL 65
Query: 74 LEIVPDDPK---ALFRRCQAYEAIGKFEEA 100
+ P K L + + GK EA
Sbjct: 66 VSRYPTHDKAAGGLLKLGLSQYGEGKNTEA 95
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 26.8 bits (60), Expect = 5.3
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERA 47
G ++K+ D+ A ++ KA +
Sbjct: 13 GAKSYKEKDFTQAKKYFEKA----CDLKENSG 40
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA
binding, lactic acid bacteria, DN protein; 2.90A
{Lactococcus lactis} SCOP: a.25.1.1
Length = 179
Score = 26.4 bits (58), Expect = 6.1
Identities = 5/49 (10%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 6 MNDYNKLKESGNSAFKQG---------DYETALDFYTKALKVTAEESHE 45
++++ ++ + + D++ F +A+K+ +E
Sbjct: 93 VSNHKFIENDPKAKYWTDEALIENFINDFQNQNLFIGRAIKLAQKEEKF 141
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6}
PDB: 3ivd_A*
Length = 509
Score = 26.5 bits (59), Expect = 6.7
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 146 FKYVFDTSAPMDKRVTAV 163
+ +D+S P+ +RV +
Sbjct: 411 LEMKYDSSKPVGQRVITL 428
>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2,
protein struct initiative, midwest center for
structural genomics, oxidore; 1.70A {Enterococcus
faecalis}
Length = 126
Score = 25.5 bits (56), Expect = 8.4
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 24 DYETALDFYTKAL 36
+Y+ +FY + L
Sbjct: 15 NYQATKNFYVEKL 27
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase,
structural genomics, NPPSFA; HET: THM; 1.75A {Thermus
thermophilus} SCOP: d.114.1.1 d.159.1.2
Length = 552
Score = 26.2 bits (58), Expect = 8.8
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 146 FKYVFDTSAPMDKRVTAV 163
+Y FD S P RV V
Sbjct: 440 LRYAFDLSRPAGSRVVRV 457
>2qnt_A AGR_C_3434P, uncharacterized protein ATU1872;
glyoxalase/bleomycin resistance protein/dioxygenase
family R protein, PSI-2, MCSG; HET: MSE EPE; 1.40A
{Agrobacterium tumefaciens str}
Length = 141
Score = 25.6 bits (56), Expect = 9.3
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 24 DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS---------- 73
D + FY L + E + A++ ++ + + S +
Sbjct: 18 DINRSKSFYRDRLGLKILEDFGSFVLFETGFAIHEGRSLEETIWRTSSDAQEAYGRRNML 77
Query: 74 LEIVPDDPKALFRRCQA 90
L D A F+
Sbjct: 78 LYFEHADVDAAFQDIAP 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.356
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,987,576
Number of extensions: 172098
Number of successful extensions: 1244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 363
Length of query: 206
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 117
Effective length of database: 4,216,824
Effective search space: 493368408
Effective search space used: 493368408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)