BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10392
(453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
pdb|3GJC|B Chain B, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
Length = 513
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 44/259 (16%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 55 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 110
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E P PN + +P+ + E+ + + P D
Sbjct: 111 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 158
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 159 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 212
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D
Sbjct: 213 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD 272
Query: 224 NNCYRDAFIVSFTNCCTSM 242
+ + N S+
Sbjct: 273 QDIVLSGLTAATLNEKASV 291
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTF----- 321
LK+P VW+ A QIFF+L L FG +I Y+SY D + + N S
Sbjct: 238 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKASVILGGSI 297
Query: 322 ---AAIVIFAIIERTGLIAYSSYN 342
AA+ F + + ++N
Sbjct: 298 SIPAAVAFFGVANAVAIAKAGAFN 321
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut
Length = 507
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 44/243 (18%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 51 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 106
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E P PN + +P+ + E+ + + P D
Sbjct: 107 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 154
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 155 EP------ILKPSLFAYIVFLITMCINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 208
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D
Sbjct: 209 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD 268
Query: 224 NNC 226
+
Sbjct: 269 QDI 271
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 304
LK+P VW+ A QIFF+L L FG +I Y+SY D +
Sbjct: 234 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI 271
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound
Antidepressant
Length = 511
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 44/243 (18%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 51 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 106
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E P PN + +P+ + E+ + + P D
Sbjct: 107 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 154
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 155 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 208
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D
Sbjct: 209 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD 268
Query: 224 NNC 226
+
Sbjct: 269 QDI 271
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 304
LK+P VW+ A QIFF+L L FG +I Y+SY D +
Sbjct: 234 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI 271
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of
Na+/cl--dependent Neurotransmitter Transporters
pdb|3F3C|A Chain A, Crystal Structure Of Leut Bound To
4-Fluoro-L-Phenylalanine And Sodium
pdb|3F3E|A Chain A, Crystal Structure Of Leut Bound To L-Leucine (30 Mm) And
Sodium
pdb|3F4I|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine And
Sodium
pdb|3F48|A Chain A, Crystal Structure Of Leut Bound To L-Alanine And Sodium
pdb|3F4J|A Chain A, Crystal Structure Of Leut Bound To Glycine And Sodium
pdb|2Q72|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Imipramine
pdb|2Q6H|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Clomipramine
pdb|3USG|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group C2 From Lipid Bicelles
pdb|3USI|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USI|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USJ|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USJ|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|C Chain C, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|D Chain D, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USL|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles
pdb|3USM|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles (Collected At 1.2 A)
pdb|3USO|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USO|B Chain B, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USP|A Chain A, Crystal Structure Of Leut In Heptyl-Beta-D-Selenoglucoside
pdb|2QB4|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium And Desipramine
pdb|2QEI|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-alanine, Sodium, And Clomipramine
Length = 519
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 44/243 (18%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 55 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 110
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E P PN + +P+ + E+ + + P D
Sbjct: 111 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 158
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 159 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 212
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D
Sbjct: 213 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD 272
Query: 224 NNC 226
+
Sbjct: 273 QDI 275
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 304
LK+P VW+ A QIFF+L L FG +I Y+SY D +
Sbjct: 238 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI 275
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And
L- Tryptophan
Length = 519
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 44/243 (18%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 55 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 110
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E P PN + +P+ + E+ + + P D
Sbjct: 111 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 158
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 159 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 212
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D
Sbjct: 213 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD 272
Query: 224 NNC 226
+
Sbjct: 273 QDI 275
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 304
LK+P VW+ A QIFF+L L FG +I Y+SY D +
Sbjct: 238 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI 275
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og
pdb|3GWU|A Chain A, Leucine Transporter Leut In Complex With Sertraline
pdb|3GWV|A Chain A, Leucine Transporter Leut In Complex With R-Fluoxetine
pdb|3GWW|A Chain A, Leucine Transporter Leut In Complex With S-fluoxetine
Length = 515
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 44/243 (18%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 55 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 110
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E P PN + +P+ + E+ + + P D
Sbjct: 111 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 158
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 159 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 212
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D
Sbjct: 213 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD 272
Query: 224 NNC 226
+
Sbjct: 273 QDI 275
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 304
LK+P VW+ A QIFF+L L FG +I Y+SY D +
Sbjct: 238 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI 275
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In
Complex With Alanine And Sodium
Length = 519
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 44/243 (18%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 55 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 110
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E P PN + +P+ + E+ + + P D
Sbjct: 111 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 158
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 159 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 212
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D
Sbjct: 213 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD 272
Query: 224 NNC 226
+
Sbjct: 273 QDI 275
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVI 326
LK+P VW+ A QIFF+L L FG +I Y+SY D + ++S T AA VI
Sbjct: 238 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI-----VLSGLTAATLNEAAEVI 292
Query: 327 FA 328
Sbjct: 293 LG 294
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut
Length = 507
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 112/237 (47%), Gaps = 32/237 (13%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 52 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 107
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFW-YRTTLDISPSI 114
+ +W L + + +P E P PN + +P+ + E+ + Y I
Sbjct: 108 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGVPKGDEPI 158
Query: 115 DEPNGFNWQIAFALVLAWTVVYLC--MMKGIASSPFVVYVT--SMFPYMVLIVFFLRGIT 170
+P+ F + I F + + V L + KGI + T + ++V+ VF L T
Sbjct: 159 LKPSLFAY-IVFLITMFINVSILIRGISKGIERFAKIAMPTLFCLAVFLVIRVFLLE--T 215
Query: 171 LPGMS-HGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 226
G + GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D +
Sbjct: 216 PNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI 272
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 304
LK+P VW+ A QIFF+L L FG +I Y+SY D +
Sbjct: 235 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI 272
>pdb|3F3A|A Chain A, Crystal Structure Of Leut Bound To L-Tryptophan And Sodium
Length = 508
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 47/243 (19%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 51 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 106
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E PT +P+ + E+ + + P D
Sbjct: 107 IESWTLGFAIKFLVGLVP--EPPT----------DPDSILRPFKEFLYSYIGV---PKGD 151
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 152 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 205
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D
Sbjct: 206 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD 265
Query: 224 NNC 226
+
Sbjct: 266 QDI 268
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 304
LK+P VW+ A QIFF+L L FG +I Y+SY D +
Sbjct: 231 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI 268
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|B Chain B, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 519
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 109/243 (44%), Gaps = 44/243 (18%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+Y+
Sbjct: 55 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYFVY 110
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E P PN + +P+ + E+ + + P D
Sbjct: 111 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 158
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 159 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 212
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D
Sbjct: 213 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD 272
Query: 224 NNC 226
+
Sbjct: 273 QDI 275
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVI 326
LK+P VW+ A QIFF+L L FG +I Y+SY D + ++S T AA VI
Sbjct: 238 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI-----VLSGLTAATLNEAAEVI 292
Query: 327 FA 328
Sbjct: 293 LG 294
>pdb|3F3D|A Chain A, Crystal Structure Of Leut Bound To L-Methionine And Sodium
Length = 517
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 175 SHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 226
+ GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D +
Sbjct: 218 ADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI 269
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 304
LK+P VW+ A QIFF+L L FG +I Y+SY D +
Sbjct: 232 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI 269
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To
Sodium And L- Tryptophan
Length = 519
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 44/243 (18%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 55 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 110
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E P PN + +P+ + E+ + + P D
Sbjct: 111 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 158
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 159 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 212
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIFF+L L G +I Y+SY D
Sbjct: 213 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGVGAIITYASYVRKD 272
Query: 224 NNC 226
+
Sbjct: 273 QDI 275
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTN--------CCT 318
LK+P VW+ A QIFF+L L G +I Y+SY D + + N
Sbjct: 238 LKDPGVWIAAVGQIFFTLSLGVGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSI 297
Query: 319 STFAAIVIFAIIERTGLIAYSSYN 342
S AA+ F + + ++N
Sbjct: 298 SIPAAVAFFGVANAVAIAKAGAFN 321
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And
L- Tryptophan
Length = 519
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 44/243 (18%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 55 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 110
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E P PN + +P+ + E+ + + P D
Sbjct: 111 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 158
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 159 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 212
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIFF+L L G +I Y+SY D
Sbjct: 213 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGVGAIITYASYVRKD 272
Query: 224 NNC 226
+
Sbjct: 273 QDI 275
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 304
LK+P VW+ A QIFF+L L G +I Y+SY D +
Sbjct: 238 LKDPGVWIAAVGQIFFTLSLGVGAIITYASYVRKDQDI 275
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From
Lipid Bicelles
pdb|4FY0|A Chain A, Crystal Structure Of Leut-F253a Bound To
L-Selenomethionine From Lipid Bicelles
Length = 513
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 44/243 (18%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 55 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 110
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E P PN + +P+ + E+ + + P D
Sbjct: 111 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 158
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 159 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 212
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIF +L L FG +I Y+SY D
Sbjct: 213 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFATLSLGFGAIITYASYVRKD 272
Query: 224 NNC 226
+
Sbjct: 273 QDI 275
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 304
LK+P VW+ A QIF +L L FG +I Y+SY D +
Sbjct: 238 LKDPGVWIAAVGQIFATLSLGFGAIITYASYVRKDQDI 275
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation
In Complex With Fab
Length = 519
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 44/243 (18%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
GIP+ ++E A+G+ GA G + +P YL+ +G+ + VA+YY
Sbjct: 55 GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 110
Query: 56 VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
+ +W L + + +P E P PN + +P+ + E+ + + P D
Sbjct: 111 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 158
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
EP I + A+ V + M ++GI+ +M +L VF +
Sbjct: 159 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 212
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
+ L + GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+S D
Sbjct: 213 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASAVRKD 272
Query: 224 NNC 226
+
Sbjct: 273 QDI 275
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTF----- 321
LK+P VW+ A QIFF+L L FG +I Y+S D + + N
Sbjct: 238 LKDPGVWIAAVGQIFFTLSLGFGAIITYASAVRKDQDIVLSGLTAATLNEAAEVILGGSI 297
Query: 322 ---AAIVIFAIIERTGLIAYSSYN 342
AA+ F + + ++N
Sbjct: 298 SIPAAVAFFGVANAVAIAKAGAFN 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,888,591
Number of Sequences: 62578
Number of extensions: 514120
Number of successful extensions: 1100
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 30
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)