Query psy10392
Match_columns 453
No_of_seqs 300 out of 1771
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 16:42:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3659|consensus 100.0 1.5E-66 3.2E-71 536.4 14.9 257 1-257 123-387 (629)
2 KOG3660|consensus 100.0 1.1E-61 2.5E-66 517.7 18.5 261 1-261 79-353 (629)
3 PF00209 SNF: Sodium:neurotran 100.0 5E-61 1.1E-65 513.1 4.0 259 2-260 47-316 (523)
4 COG0733 Na+-dependent transpor 100.0 5.3E-50 1.2E-54 407.0 13.7 258 2-449 51-313 (439)
5 KOG3660|consensus 99.4 4.9E-13 1.1E-17 144.3 5.1 118 261-449 275-393 (629)
6 KOG3659|consensus 99.3 1.6E-12 3.5E-17 136.1 2.8 122 261-449 313-434 (629)
7 PF00209 SNF: Sodium:neurotran 99.2 1.1E-12 2.4E-17 140.8 -2.6 118 261-449 239-356 (523)
8 COG0733 Na+-dependent transpor 98.0 1E-06 2.2E-11 91.1 -0.1 66 234-299 255-325 (439)
9 PF03845 Spore_permease: Spore 80.6 5.2 0.00011 40.1 7.3 167 5-231 44-212 (320)
10 PF01235 Na_Ala_symp: Sodium:a 76.2 23 0.00049 37.3 10.5 113 133-249 148-278 (416)
11 TIGR00912 2A0309 spore germina 59.5 9.3 0.0002 38.8 3.6 88 137-231 128-216 (359)
12 TIGR00814 stp serine transport 39.0 67 0.0014 33.6 6.1 75 137-219 135-212 (397)
13 TIGR00837 araaP aromatic amino 30.6 3E+02 0.0066 27.9 9.4 89 137-231 127-216 (381)
14 COG1115 AlsT Na+/alanine sympo 24.0 1.6E+02 0.0035 31.3 5.8 94 133-228 192-298 (452)
15 PRK11375 allantoin permease; P 23.7 3.5E+02 0.0075 29.0 8.5 46 125-172 159-206 (484)
16 TIGR00835 agcS amino acid carr 23.6 1.9E+02 0.0041 30.6 6.3 19 4-22 89-107 (425)
17 PRK10655 potE putrescine trans 22.8 58 0.0013 34.0 2.4 38 193-231 189-227 (438)
18 TIGR00905 2A0302 transporter, 22.4 42 0.00092 35.6 1.2 97 127-231 133-236 (473)
No 1
>KOG3659|consensus
Probab=100.00 E-value=1.5e-66 Score=536.44 Aligned_cols=257 Identities=46% Similarity=0.946 Sum_probs=241.5
Q ss_pred CEeeehHHHHHHHHHHHHhCCCChHHHHHHhccccccchhhHHHHhHHhhhhhHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q psy10392 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPTR 80 (453)
Q Consensus 1 ~l~lvGlPll~lE~~lGq~~~~g~i~~~~~~~p~~~giG~~~~l~~~li~~yY~vi~~W~l~Y~~~s~~~~lpW~~C~~~ 80 (453)
|+++.|+|++++|+++||+.|+|++++|+|++|.++|+|++++++++.+..||+++++|+++|++.|+++++||++|+++
T Consensus 123 mli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P~l~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~lPW~sC~~s 202 (629)
T KOG3659|consen 123 MLIVGGVPLFYMELALGQYHRQGCIGVWRRIAPALKGIGYAICLIAFFVGLYYNVIIAWALYYLFTSFTSNLPWESCPNS 202 (629)
T ss_pred HHHHhccHHHHHHHHHHHHhcccchhHHHHhCHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhCCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCC------CCccccCCCccchhhhccccccCCC--CCCCcchHHHHHHHHHHHHHHHhhhhhcCcccccchhhh
Q psy10392 81 VFPNGSSL------VEPECLASTPTEYFWYRTTLDISPS--IDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYV 152 (453)
Q Consensus 81 ~~~n~~~~------~~~~~~~s~~~~~F~~~~vl~~s~~--i~~~~~l~w~l~~~l~~~Wiiv~~~v~kGI~~~~Kv~~~ 152 (453)
||.+.+.. .+.+|..++|+++||+|.+++.+++ ++|.|+++|++++|++++|+++++.++||+|+.||++++
T Consensus 203 ~n~~~C~~~~~s~~~~~~~ek~s~a~ef~~r~~l~l~~~~~~~d~g~~~~~~~lc~~lv~~liyf~~~kG~kssGKvv~v 282 (629)
T KOG3659|consen 203 WNGPNCFDPTWSKNCDEECEKTSPAQEFWYRKVLGLSESHGLDDLGGPSWTLALCLVLVWLLIYFSLWKGVKSSGKVVWV 282 (629)
T ss_pred ccCCCccCccccccCchhhhccchhHHHHHhhcccccccccccccCCCchHHHHHHHHHHHHHHHHHhccccccceEEee
Confidence 98765432 2455667789999999999988776 899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHhhhhcccCCChHhhccccccccccccCChhHHHHHHhhHhhcCccccCceeeeccccCCCCccccceeE
Q psy10392 153 TSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFI 232 (453)
Q Consensus 153 ~~~~P~llliiL~ir~ltl~ga~~Gl~~lf~pd~s~L~~~~vW~~A~~QaffSLgiG~G~lit~gSy~~~~~n~~r~a~~ 232 (453)
++++|++++.++++|++++||+..|+.|+++|||+|+.++.+|.+|++|+|||||+|+|+++.++|||+++||++|||++
T Consensus 283 tallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiffslg~GfG~L~AfaSyn~F~NNc~rDAll 362 (629)
T KOG3659|consen 283 TALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFFSLGPGFGVLIAFASYNKFHNNCYRDALL 362 (629)
T ss_pred ehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHhhcCccchhhhhhhhhcccccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeechhhHHHHHHHHHHHHHhhhh
Q psy10392 233 VSFTNCCTSMFAAIVIFAIIETASL 257 (453)
Q Consensus 233 v~~~d~~~sll~gl~if~~~~~~~~ 257 (453)
+++.|.++++++|+++|++++.++.
T Consensus 363 ~S~in~~ts~~sgfviFsvLg~~a~ 387 (629)
T KOG3659|consen 363 TSIINCLTSFLSGFVIFSVLGYMAT 387 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988888888888888888776654
No 2
>KOG3660|consensus
Probab=100.00 E-value=1.1e-61 Score=517.68 Aligned_cols=261 Identities=41% Similarity=0.850 Sum_probs=237.8
Q ss_pred CEeeehHHHHHHHHHHHHhCCCChHHHHHHhccccccchhhHHHHhHHhhhhhHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q psy10392 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPTR 80 (453)
Q Consensus 1 ~l~lvGlPll~lE~~lGq~~~~g~i~~~~~~~p~~~giG~~~~l~~~li~~yY~vi~~W~l~Y~~~s~~~~lpW~~C~~~ 80 (453)
+++++|+|+++||+++||++++||+.+|||++|++||+|+++++++.++++||+++++|+++|+++|+++++||++|+++
T Consensus 79 ~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~Pif~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~ 158 (629)
T KOG3660|consen 79 VLFLFGLPLFFLEMSLGQFTSQGPVSVWRRICPIFKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNP 158 (629)
T ss_pred HHHHhcchHHHHHHHHhhhhcCChHHHHHHhChHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCCh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC--Cccc----------cCCCccchhhhccccccCCC--CCCCcchHHHHHHHHHHHHHHHhhhhhcCcccc
Q psy10392 81 VFPNGSSLV--EPEC----------LASTPTEYFWYRTTLDISPS--IDEPNGFNWQIAFALVLAWTVVYLCMMKGIASS 146 (453)
Q Consensus 81 ~~~n~~~~~--~~~~----------~~s~~~~~F~~~~vl~~s~~--i~~~~~l~w~l~~~l~~~Wiiv~~~v~kGI~~~ 146 (453)
||++.+... ..+| ...++.+++|.+.+++.+.. +++++.++|+++++++++|++++++++||+|+.
T Consensus 159 wnt~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~KGvks~ 238 (629)
T KOG3660|consen 159 WNTEYCLDGTSKQNCANLTKLSNALNFNSPVAEFWENRVLSLSDGSGIEDFGSINWPLALCLALAWLIVFFCIWKGVKSS 238 (629)
T ss_pred hcCCccccccccccccccccccchhhhccchhhhhhhhhcccccccccccCCCCChHHHHHHHHHHHHHHHHHhhccccc
Confidence 986543211 0111 11235567777777666553 788999999999999999999999999999999
Q ss_pred cchhhhhhhhhHHHHHHhhhhcccCCChHhhccccccccccccCChhHHHHHHhhHhhcCccccCceeeeccccCCCCcc
Q psy10392 147 PFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 226 (453)
Q Consensus 147 ~Kv~~~~~~~P~llliiL~ir~ltl~ga~~Gl~~lf~pd~s~L~~~~vW~~A~~QaffSLgiG~G~lit~gSy~~~~~n~ 226 (453)
||++|+++++|+++|++|++|++|||||.+|+.|+++|||++|.|+++|.||..|+|||+|+|+|.+++++||||++||+
T Consensus 239 GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l~~~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSynk~~nN~ 318 (629)
T KOG3660|consen 239 GKVVYFTATFPYVILIVLLIRGVTLPGAGDGINFYLTPDWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYNKFNNNC 318 (629)
T ss_pred CcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHHHHhhhhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeeeccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEeechhhHHHHHHHHHHHHHhhhhcccc
Q psy10392 227 YRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLGE 261 (453)
Q Consensus 227 ~r~a~~v~~~d~~~sll~gl~if~~~~~~~~~~~~ 261 (453)
.||+.++++.|+.+|+++|+++|+++|.+..+.+.
T Consensus 319 yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v 353 (629)
T KOG3660|consen 319 YRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGV 353 (629)
T ss_pred eeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999887776543
No 3
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=100.00 E-value=5e-61 Score=513.11 Aligned_cols=259 Identities=42% Similarity=0.843 Sum_probs=183.5
Q ss_pred EeeehHHHHHHHHHHHHhCCCChHHHHHHhccccccchhhHHHHhHHhhhhhHHHHHHHHHHHHHhhhCCCCCCCCCCcc
Q psy10392 2 LAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPTRV 81 (453)
Q Consensus 2 l~lvGlPll~lE~~lGq~~~~g~i~~~~~~~p~~~giG~~~~l~~~li~~yY~vi~~W~l~Y~~~s~~~~lpW~~C~~~~ 81 (453)
++++|+|++++|+++||++|+|++++|+|++|++||+|+++++.++++.+||+++++|+++|+++|+++++||++|+++|
T Consensus 47 ~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~~giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~~lpw~~C~~~~ 126 (523)
T PF00209_consen 47 LLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIFKGIGYAMVLISFLIAIYYSVIVAWALYYFFQSFTGPLPWSSCNNSW 126 (523)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHHHTHHHH---HHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC--Ccc---------ccCCCccchhhhccccccCCCCCCCcchHHHHHHHHHHHHHHHhhhhhcCcccccchh
Q psy10392 82 FPNGSSLV--EPE---------CLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVV 150 (453)
Q Consensus 82 ~~n~~~~~--~~~---------~~~s~~~~~F~~~~vl~~s~~i~~~~~l~w~l~~~l~~~Wiiv~~~v~kGI~~~~Kv~ 150 (453)
+++.+... +.+ +...++.++||++++++.++++++.+.++|+++++++++|++++++++||+|+.+|++
T Consensus 127 n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ff~~~vl~~s~~i~~~g~~~~~l~~~l~~~w~iv~~~i~kGi~~~~kv~ 206 (523)
T PF00209_consen 127 NTPNCYDIYSNCNCSNSSSYNFTQRISPAEEFFYREVLQISDGISDFGSLSWQLLLCLFIVWLIVFFGIWKGIESIGKVM 206 (523)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHTTTTTTTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHheEeccccccchh
Confidence 86543221 111 1124678999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHhhhhcccCCChHhhccccccccccccCChhHHHHHHhhHhhcCccccCceeeeccccCCCCccccce
Q psy10392 151 YVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDA 230 (453)
Q Consensus 151 ~~~~~~P~llliiL~ir~ltl~ga~~Gl~~lf~pd~s~L~~~~vW~~A~~QaffSLgiG~G~lit~gSy~~~~~n~~r~a 230 (453)
+++.++|+++++++++|++|+||+.+|++|+++|||+++.|+++|.+|++|+|||+|+|+|++++||||+|+|+|+.||+
T Consensus 207 ~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a 286 (523)
T PF00209_consen 207 YPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDA 286 (523)
T ss_dssp HHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHH
T ss_pred hhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcCcCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeechhhHHHHHHHHHHHHHhhhhccc
Q psy10392 231 FIVSFTNCCTSMFAAIVIFAIIETASLRLG 260 (453)
Q Consensus 231 ~~v~~~d~~~sll~gl~if~~~~~~~~~~~ 260 (453)
+++++.|.++++++|+++|+++++...+.+
T Consensus 287 ~~v~~~~~~~sllag~~if~~~g~~a~~~~ 316 (523)
T PF00209_consen 287 LIVAFINTLVSLLAGLVIFSVLGFLANELG 316 (523)
T ss_dssp HHHHHHHHHHHHTTGTHHHHHHHHHHHHHH
T ss_pred eEEEcCchhhhHhHHHHHHhHHhhcccCCC
Confidence 999999999999999999998877666543
No 4
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=100.00 E-value=5.3e-50 Score=406.96 Aligned_cols=258 Identities=32% Similarity=0.517 Sum_probs=208.6
Q ss_pred EeeehHHHHHHHHHHHHhCCCChHHHHHHhc--cccccchhhHHHHhHHhhhhhHHHHHHHHHHHHHhhhCCCCCCCCCC
Q psy10392 2 LAIEGIPIFYLELAIGQRLRKGAIGVWNHVS--PYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPT 79 (453)
Q Consensus 2 l~lvGlPll~lE~~lGq~~~~g~i~~~~~~~--p~~~giG~~~~l~~~li~~yY~vi~~W~l~Y~~~s~~~~lpW~~C~~ 79 (453)
++++|+|++++|+++||++|++++++++++. ++|+++||..++.++.+++||++++||++.|++.+.++.+| .+
T Consensus 51 ~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~-~~--- 126 (439)
T COG0733 51 LLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP-DT--- 126 (439)
T ss_pred HHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CC---
Confidence 4678999999999999999999999999998 67999999999999999999999999999999999999875 10
Q ss_pred cccCCCCCCCCccccCCCccchhhhccccccCCCCCCC-cchHHHHHHHHHHHHHHHhhhhhcCcccccchhhhhhhhhH
Q psy10392 80 RVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEP-NGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPY 158 (453)
Q Consensus 80 ~~~~n~~~~~~~~~~~s~~~~~F~~~~vl~~s~~i~~~-~~l~w~l~~~l~~~Wiiv~~~v~kGI~~~~Kv~~~~~~~P~ 158 (453)
. + ...+.| . + . .+++ ....|+ ++.+++++.++..|++|||||.+|+ +||.
T Consensus 127 -----~------~----~~~~~f-~-~---~---~~~~~~~~~~~-~~~~~lt~~iv~~GV~~GIEk~~ki-----mMP~ 177 (439)
T COG0733 127 -----G------E----QFAQLF-G-Q---T---ISNPGLAVIFH-LLFLVLTALIVSRGVKKGIEKANKI-----MMPL 177 (439)
T ss_pred -----h------h----HHHHHH-H-H---H---hcCchHHHHHH-HHHHHHHHHHHHHhHHhhHHHHHHH-----HHHH
Confidence 0 0 112222 1 1 1 1223 345555 4556666677889999999999999 8997
Q ss_pred --HHHHHhhhhcccCCChHhhccccccccccccCChhHHHHHHhhHhhcCccccCceeeeccccCCCCccccceeEEEee
Q psy10392 159 --MVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFT 236 (453)
Q Consensus 159 --llliiL~ir~ltl~ga~~Gl~~lf~pd~s~L~~~~vW~~A~~QaffSLgiG~G~lit~gSy~~~~~n~~r~a~~v~~~ 236 (453)
++++++++|++||||+.+|++|+|+||||++.|+++|.+|+||+|||||+|+|+|+|||||.+||+|+.+
T Consensus 178 Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~-------- 249 (439)
T COG0733 178 LFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVS-------- 249 (439)
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhh--------
Confidence 5788999999999999999999999999999888888888888888887777666666665555555544
Q ss_pred chhhHHHHHHHHHHHHHhhhhcccccccccccCccchhchhhhHHHHHHHHHHHHHhhhccCCCCCcccccceeeeehhh
Q psy10392 237 NCCTSMFAAIVIFAIIETASLRLGEVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNC 316 (453)
Q Consensus 237 d~~~sll~gl~if~~~~~~~~~~~~~~~~~l~~~~vw~~a~~qvffsL~lg~g~~it~~Sy~~~~~~~~~d~~~v~~~~~ 316 (453)
++..+++.|+
T Consensus 250 ----------------------------------------------------------------------sa~~v~~~n~ 259 (439)
T COG0733 250 ----------------------------------------------------------------------SALSIVLLNT 259 (439)
T ss_pred ----------------------------------------------------------------------hHHHHHHHHH
Confidence 4444555677
Q ss_pred HHHHHhhHHHHHHhhhhchhhcccCCCCCCcccchhhhhhhhhccchhhHHHHHHHHhCCccchhhHHHhhhhccccccC
Q psy10392 317 CTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYERCLQTRNAMLALD 396 (453)
Q Consensus 317 ~~sllag~~if~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (453)
.+|++||++|||+++ .+|.++
T Consensus 260 ~~s~lAGl~Ifpa~f-----------------------------------------~~g~~~------------------ 280 (439)
T COG0733 260 LISLLAGLVIFPALF-----------------------------------------SFGADA------------------ 280 (439)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------HhccCC------------------
Confidence 778888888888882 234444
Q ss_pred CCCCCCCCCCchhHhhhhhccCCcceehhhHHHHHHhCCchhHHHHHHHHhhc
Q psy10392 397 PHDSKNVPECSLEKELENRFDSQTYLTFDISLAREIAFSKGIFRLVSFLFKVL 449 (453)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~g~gl~F~~~~~~~~~~p~~~~~~~~ff~~~~ 449 (453)
.+||||+|+++|++|++||.|.+++++||++++
T Consensus 281 --------------------~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~ 313 (439)
T COG0733 281 --------------------SQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLL 313 (439)
T ss_pred --------------------CCCCeeehhHHHHHHHhCchhHHHHHHHHHHHH
Confidence 789999999999999999999999999999875
No 5
>KOG3660|consensus
Probab=99.35 E-value=4.9e-13 Score=144.29 Aligned_cols=118 Identities=38% Similarity=0.604 Sum_probs=108.9
Q ss_pred ccccccccCccchhchhhhHHHHHHHHHHHHHhhhccCCCCCcccccceeeeehhhHHHHHhhHHHHHHhhhhchhhccc
Q psy10392 261 EVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSS 340 (453)
Q Consensus 261 ~~~~~~l~~~~vw~~a~~qvffsL~lg~g~~it~~Sy~~~~~~~~~d~~~v~~~~~~~sllag~~if~~~~~~g~~~~~~ 340 (453)
.++|+++.+|++|.||..|+|||+|+++|++++++||||++|||+||+.++++.|+.+|+++|+++|+.+ |++|+++
T Consensus 275 ~~~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~iFsil---Gfla~~~ 351 (629)
T KOG3660|consen 275 TPDWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAIFSIL---GFLAHEQ 351 (629)
T ss_pred hhhhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeeeccCCcceeeeeeeeecccHHHHHHHHHHHHHH---HHHHHHh
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999 8999998
Q ss_pred CCC-CCCcccchhhhhhhhhccchhhHHHHHHHHhCCccchhhHHHhhhhccccccCCCCCCCCCCCchhHhhhhhccCC
Q psy10392 341 YNP-VDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYERCLQTRNAMLALDPHDSKNVPECSLEKELENRFDSQ 419 (453)
Q Consensus 341 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 419 (453)
+.. +++- + .+|
T Consensus 352 ~v~~~~~v------------------------------~--------------------------------------~~g 363 (629)
T KOG3660|consen 352 GVSDIAEV------------------------------A--------------------------------------KSG 363 (629)
T ss_pred CCcchhhc------------------------------c--------------------------------------CCC
Confidence 842 1111 1 679
Q ss_pred cceehhhHHHHHHhCCchhHHHHHHHHhhc
Q psy10392 420 TYLTFDISLAREIAFSKGIFRLVSFLFKVL 449 (453)
Q Consensus 420 ~gl~F~~~~~~~~~~p~~~~~~~~ff~~~~ 449 (453)
|||+|+++||++++||.+++|+.+||++++
T Consensus 364 ~~LaFi~YP~a~~~~p~~plWs~LfF~ml~ 393 (629)
T KOG3660|consen 364 PGLAFIAYPEALAQMPLSPLWSGLFFFMLL 393 (629)
T ss_pred CchhhhhhHHHHHhCcccHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 6
>KOG3659|consensus
Probab=99.26 E-value=1.6e-12 Score=136.14 Aligned_cols=122 Identities=40% Similarity=0.610 Sum_probs=112.8
Q ss_pred ccccccccCccchhchhhhHHHHHHHHHHHHHhhhccCCCCCcccccceeeeehhhHHHHHhhHHHHHHhhhhchhhccc
Q psy10392 261 EVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSS 340 (453)
Q Consensus 261 ~~~~~~l~~~~vw~~a~~qvffsL~lg~g~~it~~Sy~~~~~~~~~d~~~v~~~~~~~sllag~~if~~~~~~g~~~~~~ 340 (453)
.||++++.++.+|.+|.+|+|||||.|+|.+++++||||.+|||+||++.+..+|+.+++++|+++|+++ |+|+...
T Consensus 313 ~~~~~kl~~~~vW~dAAtqiffslg~GfG~L~AfaSyn~F~NNc~rDAll~S~in~~ts~~sgfviFsvL---g~~a~~~ 389 (629)
T KOG3659|consen 313 TPDIEKLKEPSVWIDAATQIFFSLGPGFGVLIAFASYNKFHNNCYRDALLTSIINCLTSFLSGFVIFSVL---GYMATLI 389 (629)
T ss_pred cccHHHHhhHHHHHHHHHHHHhhcCccchhhhhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHhcc
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999 5553331
Q ss_pred CCCCCCcccchhhhhhhhhccchhhHHHHHHHHhCCccchhhHHHhhhhccccccCCCCCCCCCCCchhHhhhhhccCCc
Q psy10392 341 YNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYERCLQTRNAMLALDPHDSKNVPECSLEKELENRFDSQT 420 (453)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 420 (453)
-+|+.+.|..++ .+||
T Consensus 390 ---------------------------------------------------------------y~~~~~~e~~~~-~~gp 405 (629)
T KOG3659|consen 390 ---------------------------------------------------------------YPCNEEIEELVA-VAGP 405 (629)
T ss_pred ---------------------------------------------------------------ccccccHHHhhh-hcCC
Confidence 147888888888 9999
Q ss_pred ceehhhHHHHHHhCCchhHHHHHHHHhhc
Q psy10392 421 YLTFDISLAREIAFSKGIFRLVSFLFKVL 449 (453)
Q Consensus 421 gl~F~~~~~~~~~~p~~~~~~~~ff~~~~ 449 (453)
||+|+++|||+++||.++||+++||++++
T Consensus 406 ~lafivy~Eait~~~~s~fWs~iFFlmL~ 434 (629)
T KOG3659|consen 406 GLAFIVYPEAITNMPYSSFWSVIFFLMLL 434 (629)
T ss_pred ceEEEehhhHHhcCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 7
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=99.20 E-value=1.1e-12 Score=140.80 Aligned_cols=118 Identities=35% Similarity=0.618 Sum_probs=100.8
Q ss_pred ccccccccCccchhchhhhHHHHHHHHHHHHHhhhccCCCCCcccccceeeeehhhHHHHHhhHHHHHHhhhhchhhccc
Q psy10392 261 EVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSS 340 (453)
Q Consensus 261 ~~~~~~l~~~~vw~~a~~qvffsL~lg~g~~it~~Sy~~~~~~~~~d~~~v~~~~~~~sllag~~if~~~~~~g~~~~~~ 340 (453)
.|||+++.+|++|.+|.+|+|||+|+|+|.+++|+||+|+++|+.||+.++++.|+.+|+++|+++||++ |+++.+.
T Consensus 239 ~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if~~~---g~~a~~~ 315 (523)
T PF00209_consen 239 TPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIFSVL---GFLANEL 315 (523)
T ss_dssp SB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHH---HHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcCcCCCCccccccceEEEcCchhhhHhHHHHHHhHH---hhcccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999 5555444
Q ss_pred CCCCCCcccchhhhhhhhhccchhhHHHHHHHHhCCccchhhHHHhhhhccccccCCCCCCCCCCCchhHhhhhhccCCc
Q psy10392 341 YNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYERCLQTRNAMLALDPHDSKNVPECSLEKELENRFDSQT 420 (453)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 420 (453)
+.|+ -.+ + ++||
T Consensus 316 ~~~i--------------------------~~v----~--------------------------------------~~g~ 327 (523)
T PF00209_consen 316 GVPI--------------------------SDV----P--------------------------------------ESGP 327 (523)
T ss_dssp HHHH--------------------------HH--------------------------------------------H-CH
T ss_pred CCCh--------------------------hHh----h--------------------------------------CcCC
Confidence 3110 000 0 5699
Q ss_pred ceehhhHHHHHHhCCchhHHHHHHHHhhc
Q psy10392 421 YLTFDISLAREIAFSKGIFRLVSFLFKVL 449 (453)
Q Consensus 421 gl~F~~~~~~~~~~p~~~~~~~~ff~~~~ 449 (453)
||+|+++|+++++||+|++|+++||+++.
T Consensus 328 ~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~ 356 (523)
T PF00209_consen 328 GLAFIVLPEAFSQMPGGRFWAILFFLMLF 356 (523)
T ss_dssp HHHHTHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHcCCCCcChHHHHHHHHH
Confidence 99999999999999999999999999874
No 8
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.02 E-value=1e-06 Score=91.08 Aligned_cols=66 Identities=21% Similarity=0.198 Sum_probs=48.2
Q ss_pred EeechhhHHHHHHHHHHHHHhhhhcccc-cccccccCccchhc-hhhhHHH---HHHHHHHHHHhhhccCC
Q psy10392 234 SFTNCCTSMFAAIVIFAIIETASLRLGE-VHWYMLKEPHVWLE-AGTQIFF---SLGLAFGGLIAYSSYNP 299 (453)
Q Consensus 234 ~~~d~~~sll~gl~if~~~~~~~~~~~~-~~~~~l~~~~vw~~-a~~qvff---sL~lg~g~~it~~Sy~~ 299 (453)
+..|+.+++++|+++||.++.++.+++. |.+.++..|+++.+ +.|++|. .+.+.+.++.+.-|..+
T Consensus 255 ~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSmlE 325 (439)
T COG0733 255 VLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLE 325 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999888776553 44777788888877 5666543 44566777766655443
No 9
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=80.59 E-value=5.2 Score=40.13 Aligned_cols=167 Identities=16% Similarity=0.234 Sum_probs=87.7
Q ss_pred ehHHHHHHHHHHHHh-CCCChHHHHHHhccccccchhhHHHHhHHhhhhhHHHHHHHHHHHHHhhhCC-CCCCCCCCccc
Q psy10392 5 EGIPIFYLELAIGQR-LRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQ-LPWAECPTRVF 82 (453)
Q Consensus 5 vGlPll~lE~~lGq~-~~~g~i~~~~~~~p~~~giG~~~~l~~~li~~yY~vi~~W~l~Y~~~s~~~~-lpW~~C~~~~~ 82 (453)
.+++..++-..++++ .+++..+.-++.. .|++|. +.+++...|+-...+..+..+..-.+.. +|
T Consensus 44 ~~l~~~~l~~~l~~~~p~~~l~~~~~~~~--Gk~lg~---ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp--------- 109 (320)
T PF03845_consen 44 IGLLLALLIYYLLKRFPGKTLVEISEKLF--GKWLGK---IINLLYILYFLLISALVLREFSEFIKTYLLP--------- 109 (320)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHh--CcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 466777777777776 5556666655543 344554 4455666777777777776666655432 22
Q ss_pred CCCCCCCCccccCCCccchhhhccccccCCCCCCCcchHHHHHHHHHHHHHHHhhhhhcCcccccchhhhhhhhhHHHHH
Q psy10392 83 PNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLI 162 (453)
Q Consensus 83 ~n~~~~~~~~~~~s~~~~~F~~~~vl~~s~~i~~~~~l~w~l~~~l~~~Wiiv~~~v~kGI~~~~Kv~~~~~~~P~llli 162 (453)
+...|.+..++. +++.-+..+|+|..+|...+ .+|..++.
T Consensus 110 -----------------------------------~TP~~~i~~~~l---l~~~y~a~~G~e~i~R~~~~--~~~~~~i~ 149 (320)
T PF03845_consen 110 -----------------------------------ETPIWVIILLFL---LVAAYAARKGIEVIARVAEI--LFPIFLIL 149 (320)
T ss_pred -----------------------------------cCCHHHHHHHHH---HHHHHHHhcCHHHHHHHHHH--HHHHHHHH
Confidence 112222222222 23445778999999996544 44554433
Q ss_pred HhhhhcccCCChHhhccccccccccccCChhHHHHHHhhHhhcCccccCceeeeccccCCCCcccccee
Q psy10392 163 VFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAF 231 (453)
Q Consensus 163 iL~ir~ltl~ga~~Gl~~lf~pd~s~L~~~~vW~~A~~QaffSLgiG~G~lit~gSy~~~~~n~~r~a~ 231 (453)
.+.+-.+..++..- ..+.|=++. +.+-...+.-...+.. .|.-.+..+..|.+++++..|...
T Consensus 150 ~~~i~~~~~~~~~~---~~l~P~~~~--g~~~i~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~k~~~ 212 (320)
T PF03845_consen 150 LLLILLLSIPNIDW---DNLLPVLES--GIKPILKGSLVISFPF-GGIEILLFLFPFVKDKKKLKKSLL 212 (320)
T ss_pred HHHHHHHhcccCCH---HHeeCcccC--ChHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHH
Confidence 33333333333211 122332221 1222233333333333 244456667788888888877654
No 10
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=76.20 E-value=23 Score=37.35 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=58.1
Q ss_pred HHHhhhhhcCcccccchhhhhhhhhHH----HHHHhhhhcccCCChHhhcc----ccccccccccCC---hhHH----HH
Q psy10392 133 TVVYLCMMKGIASSPFVVYVTSMFPYM----VLIVFFLRGITLPGMSHGLS----HLFTPKWYMLKE---PHVW----LE 197 (453)
Q Consensus 133 iiv~~~v~kGI~~~~Kv~~~~~~~P~l----lliiL~ir~ltl~ga~~Gl~----~lf~pd~s~L~~---~~vW----~~ 197 (453)
+++.+.+..|+||++|+.-. ++|+. ++..+.+-....+.-.+.+. .-|+|+- ... .... ..
T Consensus 148 ~l~~~vi~GGikrI~~v~~~--lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~a--a~GG~~G~~i~~ai~~ 223 (416)
T PF01235_consen 148 ILVALVIFGGIKRIAKVSEK--LVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKA--AFGGFAGSTIMMAIRQ 223 (416)
T ss_pred HHHHHHHHcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCcc--chhhHHHHHHHHHHHH
Confidence 34556778999999988533 56753 12222222223333333333 3444432 111 1222 33
Q ss_pred HHhhHhhcCccccCceeeeccccCCCCccccc--eeEEEeechh-hHHHHHHHHH
Q psy10392 198 AGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRD--AFIVSFTNCC-TSMFAAIVIF 249 (453)
Q Consensus 198 A~~QaffSLgiG~G~lit~gSy~~~~~n~~r~--a~~v~~~d~~-~sll~gl~if 249 (453)
-.....||--.|.|.-..-.|-.+.+++..+. +.+=++.|++ .+.++++++.
T Consensus 224 Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl 278 (416)
T PF01235_consen 224 GVARGLFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVIL 278 (416)
T ss_pred hhhhhhccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhh
Confidence 44456789888888877777766666664443 2223345544 3445555544
No 11
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=59.51 E-value=9.3 Score=38.80 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=48.3
Q ss_pred hhhhcCcccccchhhhhhhhhHHHHH-HhhhhcccCCChHhhccccccccccccCChhHHHHHHhhHhhcCccccCceee
Q psy10392 137 LCMMKGIASSPFVVYVTSMFPYMVLI-VFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIA 215 (453)
Q Consensus 137 ~~v~kGI~~~~Kv~~~~~~~P~llli-iL~ir~ltl~ga~~Gl~~lf~pd~s~L~~~~vW~~A~~QaffSLgiG~G~lit 215 (453)
....+|+|..+|+..+. .|..+.. .+++-.+..+.. ..++ +.|-+++= -.+.+..+...++++.+ |+..+..
T Consensus 128 ~~~~~Gi~~i~r~~~i~--~~~~i~~~~~il~~~~~~~~--~~~~-l~P~~~~g-~~~~~~~~~~~~~~~f~-g~~i~~~ 200 (359)
T TIGR00912 128 YIVRKGIEVLLRTAEIL--LIIFLILFILVLILLAPKLG--NIKN-LLPVLENG-LSPILKGAYPVVTFAFG-EIEIFFL 200 (359)
T ss_pred HHHHccHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccc--cHHH-ccCccccC-cHHHHhhhhHHhhhhhH-HHHHHHH
Confidence 46678999999986553 3443222 122222222211 1222 23444321 13455555546777774 7777777
Q ss_pred eccccCCCCcccccee
Q psy10392 216 YSSYNPVDNNCYRDAF 231 (453)
Q Consensus 216 ~gSy~~~~~n~~r~a~ 231 (453)
+..+.+++++..|...
T Consensus 201 ~~~~~~~~~~~~k~~~ 216 (359)
T TIGR00912 201 LFPLLSKKKKIKKSII 216 (359)
T ss_pred HHHHhCChhhhHHHHH
Confidence 7888888778777654
No 12
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=39.05 E-value=67 Score=33.57 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=38.6
Q ss_pred hhhhcCcccccchhhhhhhhhHH-HHHHhhhhcccCCChHhhccccc-cccccccCChhHHHHHHhhHhhcCccccCcee
Q psy10392 137 LCMMKGIASSPFVVYVTSMFPYM-VLIVFFLRGITLPGMSHGLSHLF-TPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLI 214 (453)
Q Consensus 137 ~~v~kGI~~~~Kv~~~~~~~P~l-lliiL~ir~ltl~ga~~Gl~~lf-~pd~s~L~~~~vW~~A~~QaffSLgiG~G~li 214 (453)
..+.+|.|...|+..+.. .|.+ .++.+.+.. .|.. + .+.+. .|+... ..+....|+-..++|.+ +...+-
T Consensus 135 ~iv~~G~~~i~r~~~il~-~~~ii~l~~l~~~l--ip~~-~-~~~L~~~p~~~~--~~~~i~~alpv~~~SF~-~~~iIs 206 (397)
T TIGR00814 135 AIMSFGEKLLFKIMGPLV-FPLVLILVLLSLYL--IPHW-N-GANLTTFPSFNG--FLKTLWLTIPVMVFSFN-HSPIIS 206 (397)
T ss_pred HHHHhcHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHc-C-HHHHhcCCcccc--hHHHHHHHHHHHHHHHH-ccccch
Confidence 456779999988865432 1222 222222222 1221 1 11122 232111 12445568888999986 777777
Q ss_pred eec-cc
Q psy10392 215 AYS-SY 219 (453)
Q Consensus 215 t~g-Sy 219 (453)
++. +|
T Consensus 207 sl~~~~ 212 (397)
T TIGR00814 207 SFAISY 212 (397)
T ss_pred HHHHHH
Confidence 776 56
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=30.65 E-value=3e+02 Score=27.92 Aligned_cols=89 Identities=9% Similarity=-0.039 Sum_probs=41.7
Q ss_pred hhhhcCcccccchhhhhhhhhHHHHHHhhhhcccCCChHhhccccccccccccCChhHHHHHHhhHhhcCccccCceeee
Q psy10392 137 LCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAY 216 (453)
Q Consensus 137 ~~v~kGI~~~~Kv~~~~~~~P~llliiL~ir~ltl~ga~~Gl~~lf~pd~s~L~~~~vW~~A~~QaffSLgiG~G~lit~ 216 (453)
..+.+|+|..+|+..+....-.+.++.+.+.+...-.. +. +.|....-.+......|..-.+++.|. .+.+..+
T Consensus 127 ~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~----~~-~~~~~~~~~~~~~~~~a~~~~~~~fg~-~~~i~~~ 200 (381)
T TIGR00837 127 SFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKG----DL-LLDVALDTSYWPYILSALPVCLTSFGF-HGNVPSL 200 (381)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccH----HH-HhcCccccccHHHHHHHHHHHHHHHHc-ccccHHH
Confidence 35678888888875443322122222222222211111 11 222111111334456788877777742 2455565
Q ss_pred ccccC-CCCcccccee
Q psy10392 217 SSYNP-VDNNCYRDAF 231 (453)
Q Consensus 217 gSy~~-~~~n~~r~a~ 231 (453)
..+.+ +++|+.|..+
T Consensus 201 ~~~~~~~~k~i~raii 216 (381)
T TIGR00837 201 YKYYDGNVKKVKKSIL 216 (381)
T ss_pred HHHhccCHHHHHHHHH
Confidence 66654 4556666544
No 14
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=23.97 E-value=1.6e+02 Score=31.28 Aligned_cols=94 Identities=19% Similarity=0.225 Sum_probs=48.6
Q ss_pred HHHhhhhhcCcccccchhhhhhhhhHH-------HHHHhhhhcccCCChHhhc-ccccccccc--ccCC---hhHHHHHH
Q psy10392 133 TVVYLCMMKGIASSPFVVYVTSMFPYM-------VLIVFFLRGITLPGMSHGL-SHLFTPKWY--MLKE---PHVWLEAG 199 (453)
Q Consensus 133 iiv~~~v~kGI~~~~Kv~~~~~~~P~l-------lliiL~ir~ltl~ga~~Gl-~~lf~pd~s--~L~~---~~vW~~A~ 199 (453)
+++...+.+|+||++|+.-. .+|++ .+++++...-.+|++.+-+ +.=|.|+-. -... .++-..-.
T Consensus 192 ~l~~~VI~GGi~rIa~v~~~--vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv 269 (452)
T COG1115 192 LLVALVIFGGIKRIAKVSSK--VVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGV 269 (452)
T ss_pred HHHHHHHHcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHH
Confidence 44667788999999988533 56753 1223333333345443321 112222210 1111 12344455
Q ss_pred hhHhhcCccccCceeeeccccCCCCcccc
Q psy10392 200 TQIFFSLGLAFGGLIAYSSYNPVDNNCYR 228 (453)
Q Consensus 200 ~QaffSLgiG~G~lit~gSy~~~~~n~~r 228 (453)
....||-=.|.|.-..-.+-.+-+|+..+
T Consensus 270 ~RGlfSNEAGmGsap~aaAaA~~~hPv~Q 298 (452)
T COG1115 270 KRGLFSNEAGMGSAPIAAAAAKTDHPVKQ 298 (452)
T ss_pred HHHhhcccccCCcchhHHHhhcCCCcHHH
Confidence 56678887777776666555555555443
No 15
>PRK11375 allantoin permease; Provisional
Probab=23.71 E-value=3.5e+02 Score=29.03 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhhcCcccccchhhhhhhhhHH--HHHHhhhhcccCC
Q psy10392 125 AFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYM--VLIVFFLRGITLP 172 (453)
Q Consensus 125 ~~~l~~~Wiiv~~~v~kGI~~~~Kv~~~~~~~P~l--lliiL~ir~ltl~ 172 (453)
.++.++.|++.......|.|++.|..++ ..|.+ +++.+.++.+..-
T Consensus 159 ~i~~~i~~~l~~~~~~~g~~~i~~l~~i--~~p~~~i~~~~~~~~~~~~~ 206 (484)
T PRK11375 159 LITFLIFWLVNVGIGFGGGKVLNKFTAI--LNPCIYIVFGGMAIWAISLV 206 (484)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence 4455566666655667788888776554 34553 4445555655543
No 16
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=23.64 E-value=1.9e+02 Score=30.61 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=16.7
Q ss_pred eehHHHHHHHHHHHHhCCC
Q psy10392 4 IEGIPIFYLELAIGQRLRK 22 (453)
Q Consensus 4 lvGlPll~lE~~lGq~~~~ 22 (453)
++|...-+.|..++|+.|+
T Consensus 89 llGm~~~~~e~~L~~~yr~ 107 (425)
T TIGR00835 89 FIGMATKFVESTLAQKYRE 107 (425)
T ss_pred HHHHHHHHHHHHHHHHeee
Confidence 5688889999999999994
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=22.85 E-value=58 Score=34.00 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=26.3
Q ss_pred hHHHHHHhhHhhcCccccCceeeeccccCC-CCcccccee
Q psy10392 193 HVWLEAGTQIFFSLGLAFGGLIAYSSYNPV-DNNCYRDAF 231 (453)
Q Consensus 193 ~vW~~A~~QaffSLgiG~G~lit~gSy~~~-~~n~~r~a~ 231 (453)
..+..++..++|+. .|+.....++.-.|+ ++|++|..+
T Consensus 189 ~~~~~~~~~~~~af-~G~e~~~~~a~E~k~P~r~iPrAi~ 227 (438)
T PRK10655 189 SAVGSSIAMTLWAF-LGLESACANSDAVENPERNVPIAVL 227 (438)
T ss_pred HHHHHHHHHHHHHH-hhhhhhhhhHHHhhCccccccHHHH
Confidence 44666777788888 677777777666654 557777744
No 18
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=22.36 E-value=42 Score=35.58 Aligned_cols=97 Identities=13% Similarity=0.199 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhhhcCcccccchhhhhhh---hhHHHHHHhhhhcccCCChHhhccccc----cccccccCChhHHHHHH
Q psy10392 127 ALVLAWTVVYLCMMKGIASSPFVVYVTSM---FPYMVLIVFFLRGITLPGMSHGLSHLF----TPKWYMLKEPHVWLEAG 199 (453)
Q Consensus 127 ~l~~~Wiiv~~~v~kGI~~~~Kv~~~~~~---~P~llliiL~ir~ltl~ga~~Gl~~lf----~pd~s~L~~~~vW~~A~ 199 (453)
.+++.++ ......+|+|..+|+-.+... .|.++++++..... .+. ....-+ .|+++. +...+..++
T Consensus 133 ~~~~~~~-~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~--~~~--~~~~~~~~~~~p~~~~--~~~~~~~~~ 205 (473)
T TIGR00905 133 ASVLLWV-FTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWF--KLD--LFTADFWGHDVPSLGS--VFSQVKNTM 205 (473)
T ss_pred HHHHHHH-HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--Cch--hcccccCccCCCcccc--hHHHHHHHH
Confidence 3444433 334667899998887544332 23333222222111 111 111111 122211 235677888
Q ss_pred hhHhhcCccccCceeeeccccCCCCcccccee
Q psy10392 200 TQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAF 231 (453)
Q Consensus 200 ~QaffSLgiG~G~lit~gSy~~~~~n~~r~a~ 231 (453)
..++|+. .|+-....++...|+++|++|..+
T Consensus 206 ~~~~~af-~G~e~~~~~a~E~k~~r~iPrai~ 236 (473)
T TIGR00905 206 LVTLWVF-IGIEGAVVSSGRAKNKSDVGKATV 236 (473)
T ss_pred HHHHHHH-HhHHHHHHHHHHHhccccchHHHH
Confidence 8899988 477777677766666667777644
Done!