RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10392
(453 letters)
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid
transporter AT1, 2 and 3, and related proteins;
solute-binding domain. This subgroup includes the
solute-binding domain of transmembrane transporters,
which transport, i) neutral amino acids: NTT4 (also
called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3),
and B0AT1 (also called HND); the human genes encoding
these are SLC6A17, SLC6A15, and SLC6A19 respectively,
ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino
acids, such as proline, pipecolate, MeAIB, and
sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The
human genes encoding B0AT3 and SIT1 are SLC6A18 and
SLC6A20 respectively. Transporters in this subgroup may
play a role in disorders including major depression,
Hartnup disorder, increased susceptibility to myocardial
infarction, and iminoglycinuria. This subgroup belongs
to the solute carrier 6 (SLC6) transporter family.
Length = 565
Score = 433 bits (1116), Expect = e-148
Identities = 162/252 (64%), Positives = 194/252 (76%), Gaps = 3/252 (1%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
ML +EGIP+F+LELAIGQRLRKG+IGVWN +SPYL GIGIAS VVSF VALYYN +IAWC
Sbjct: 46 MLVLEGIPLFFLELAIGQRLRKGSIGVWNTISPYLGGIGIASCVVSFLVALYYNVIIAWC 105
Query: 61 LFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGF 120
FY SF+ LPW+ CPT G EC S+PT+YFWYRTTLDISPSIDE G
Sbjct: 106 FFYLFNSFQYPLPWSSCPTNGNGTG---YVEECAKSSPTQYFWYRTTLDISPSIDESGGL 162
Query: 121 NWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSH 180
NW + L+LAW +VYLCM+KGI SS VVY T+ FPY+VLI+F +RG+TL G GL H
Sbjct: 163 NWWMTLCLLLAWIIVYLCMIKGIKSSGKVVYFTATFPYIVLIIFLIRGLTLKGAGDGLKH 222
Query: 181 LFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
+FTPK+ L +P VWL+A TQIFFSLGL FG LIA+SSYNP NNC+RDA +VS NC T
Sbjct: 223 MFTPKFEKLLDPQVWLDAATQIFFSLGLGFGSLIAFSSYNPPKNNCHRDAVLVSLINCFT 282
Query: 241 SMFAAIVIFAII 252
S+FA+IV+F+++
Sbjct: 283 SIFASIVVFSVL 294
Score = 129 bits (326), Expect = 2e-32
Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 44/130 (33%)
Query: 264 WYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAA 323
+ L +P VWL+A TQIFFSLGL FG
Sbjct: 228 FEKLLDPQVWLDAATQIFFSLGLGFG---------------------------------- 253
Query: 324 IVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYE 383
LIA+SSYNP NNC+RDA +VS NC TS+FA+IV+F+++GFKAT Y+
Sbjct: 254 ----------SLIAFSSYNPPKNNCHRDAVLVSLINCFTSIFASIVVFSVLGFKATTRYD 303
Query: 384 RCLQTRNAML 393
RC+ + +L
Sbjct: 304 RCVDSNILIL 313
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family.
Length = 506
Score = 322 bits (827), Expect = e-105
Identities = 125/252 (49%), Positives = 163/252 (64%), Gaps = 7/252 (2%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
L GIP+F+LELA+GQ R+GAIGVW + P GIG AS V+ F + +YYN +IAW
Sbjct: 46 FLITAGIPLFFLELALGQYTREGAIGVWRKICPLFKGIGYASMVIVFYIGIYYNVIIAWA 105
Query: 61 LFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGF 120
L+Y SF +LPWA C +S P C ++P E FW R L +S I++ G
Sbjct: 106 LYYLFSSFTTELPWASC-------NNSWNTPRCEKTSPVEEFWERKVLKLSDGIEDLGGL 158
Query: 121 NWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSH 180
W + L++AW VVY C+ KG+ SS VVY T+ FPY+VL+V +RG+TLPG + G+
Sbjct: 159 RWPLTLCLLVAWVVVYFCIWKGVKSSGKVVYFTATFPYVVLLVLLVRGVTLPGAADGIDF 218
Query: 181 LFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
TP W L +P VW++A TQIFFSLG+ FGGLIA++SYN NNCYRDA IVSF N T
Sbjct: 219 YLTPDWSKLLDPQVWIDAATQIFFSLGIGFGGLIAFASYNKFHNNCYRDALIVSFINSAT 278
Query: 241 SMFAAIVIFAII 252
S A VIF+++
Sbjct: 279 SFLAGFVIFSVL 290
Score = 109 bits (275), Expect = 6e-26
Identities = 41/67 (61%), Positives = 50/67 (74%)
Query: 264 WYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAA 323
W L +P VW++A TQIFFSLG+ FGGLIA++SYN NNCYRDA IVSF N TS A
Sbjct: 224 WSKLLDPQVWIDAATQIFFSLGIGFGGLIAFASYNKFHNNCYRDALIVSFINSATSFLAG 283
Query: 324 IVIFAII 330
VIF+++
Sbjct: 284 FVIFSVL 290
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding
domain. B0AT3 (also called Xtrp2, XT2) transports
glycine. Human B0AT3 is encoded by the SLC6A18 gene.
B0AT3 is expressed in the kidney. Mutations in the
SLC6A18 gene may contribute to the autosomal recessive
disorder iminoglycinuria and its related disorder
hyperglycinuria. SLC6A18 or its neighboring genes are
associated with increased susceptibility to myocardial
infarction. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 576
Score = 310 bits (797), Expect = e-100
Identities = 130/251 (51%), Positives = 181/251 (72%), Gaps = 3/251 (1%)
Query: 2 LAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCL 61
L EGIP+F+LELAIGQRLRKG+IGVW +SPYL G+G+ VSF V+LYYNT++AW L
Sbjct: 48 LVFEGIPLFHLELAIGQRLRKGSIGVWTTISPYLGGVGLGCVTVSFLVSLYYNTILAWVL 107
Query: 62 FYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFN 121
+YF SF+ LPW+ CP + N + VE EC ST YFWYR TL+I+P I++
Sbjct: 108 WYFLNSFQHPLPWSSCPLDL--NRTGFVE-ECQGSTAVSYFWYRQTLNITPDINDSGSIQ 164
Query: 122 WQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHL 181
W + L W +VYLC+++GI ++ V+Y T++FPY+VL +F +RG+TLPG + GL +L
Sbjct: 165 WWLLLCLAACWAIVYLCVIRGIETTGKVIYFTALFPYLVLTIFLIRGLTLPGATEGLIYL 224
Query: 182 FTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTS 241
FTP ++L+ P VWL+A TQIFFSL LAFGG IA++SYNP N+C +DA ++ N TS
Sbjct: 225 FTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNPPRNDCEKDAVTIALVNSMTS 284
Query: 242 MFAAIVIFAII 252
++A+I +F+++
Sbjct: 285 LYASIPVFSVL 295
Score = 93.3 bits (232), Expect = 3e-20
Identities = 52/148 (35%), Positives = 75/148 (50%), Gaps = 48/148 (32%)
Query: 264 WYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAA 323
++L+ P VWL+A TQIFFSL LAFGG IA++SYNP N+C +DA + A
Sbjct: 229 MHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNPPRNDCEKDAVTI-----------A 277
Query: 324 IVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYE 383
+V N TS++A+I +F+++GFKATN YE
Sbjct: 278 LV---------------------------------NSMTSLYASIPVFSVLGFKATNDYE 304
Query: 384 RCLQTRNAMLALDPHDSKNVPECSLEKE 411
CL RN + ++ D PE S+ ++
Sbjct: 305 HCLD-RNILSLINEFD---FPEQSISRD 328
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid
transporter SIT1; solute-binding domain. SIT1 (also
called XTRP3, XT3, IMINO) transports imino acids, such
as proline, pipecolate, MeAIB, and sarcosine. It has
weak affinity for neutral amino acids such as
phenylalanine. Human SIT1 is encoded by the SLC6A20
gene. SIT1 is expressed in brain, kidney, small
intestine, thymus, spleen, ovary, and lung. SLC6A20 is a
candidate gene for the rare disorder iminoglycinuria.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 576
Score = 299 bits (767), Expect = 8e-96
Identities = 135/251 (53%), Positives = 181/251 (72%), Gaps = 3/251 (1%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
ML +EG+P+ YLELA+GQR+R+G+IG W +SPYL G+G+AS VVSF +++YYN + AW
Sbjct: 49 MLILEGMPLLYLELAVGQRMRQGSIGAWKSISPYLGGVGVASVVVSFFLSMYYNVINAWA 108
Query: 61 LFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGF 120
+Y SF+ LPW+ CP + N + E EC ++PT+YFWYR TL+ISPSI+E G
Sbjct: 109 FWYLFHSFQDPLPWSVCP--LNSNRTGYTE-ECEKASPTQYFWYRETLNISPSIEESGGI 165
Query: 121 NWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSH 180
W+ A L+LAW VVYLC+++G S+ VVYVT+ PY+VLI++ +RG+TL G ++GL +
Sbjct: 166 QWEQALCLILAWLVVYLCILRGTESTGKVVYVTATLPYLVLIIYLIRGLTLHGAANGLKY 225
Query: 181 LFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
+FTPK L P W+ A TQIFFSLGL FG LIA++SYN NNC R A IVS N T
Sbjct: 226 MFTPKLEQLANPKTWINAATQIFFSLGLGFGSLIAFASYNEPSNNCERHAIIVSLINSGT 285
Query: 241 SMFAAIVIFAI 251
S+FA+IV F+I
Sbjct: 286 SIFASIVTFSI 296
Score = 83.0 bits (205), Expect = 6e-17
Identities = 38/63 (60%), Positives = 43/63 (68%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVI 326
L P W+ A TQIFFSLGL FG LIA++SYN NNC R A IVS N TS FA+IV
Sbjct: 234 LANPKTWINAATQIFFSLGLGFGSLIAFASYNEPSNNCERHAIIVSLINSGTSIFASIVT 293
Query: 327 FAI 329
F+I
Sbjct: 294 FSI 296
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 299 bits (766), Expect = 1e-95
Identities = 136/252 (53%), Positives = 183/252 (72%), Gaps = 1/252 (0%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
+L + GIP+F+LEL++GQR+R+G+IGVWN++SP L GIG AS +V F VALYYN +I W
Sbjct: 46 LLLVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGGIGFASCIVCFFVALYYNVIIGWS 105
Query: 61 LFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGF 120
LFYF+QSF+ LPW +CP V + VEPEC S+ T Y+WYR L+IS SI E G
Sbjct: 106 LFYFSQSFQQPLPWDQCPL-VKNASHTFVEPECEKSSATTYYWYREALNISSSISESGGL 164
Query: 121 NWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSH 180
NW++ L+ AW +V L M+KGI SS ++Y +S+FPY+VLI F +R + L G G+ H
Sbjct: 165 NWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLICFLIRALLLNGSVDGIRH 224
Query: 181 LFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
+FTPK ++ EP VW EA TQ+FF+LGL FGG+IA+SSYN DNNC+ DA +VSF N T
Sbjct: 225 MFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNNCHFDAVLVSFINFFT 284
Query: 241 SMFAAIVIFAII 252
S+ A +V+FA++
Sbjct: 285 SVLATLVVFAVL 296
Score = 85.7 bits (212), Expect = 6e-18
Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 9/100 (9%)
Query: 240 TSMFAAIVIFAIIETASLRLGEV----HWYMLK-----EPHVWLEAGTQIFFSLGLAFGG 290
+S+F +V+ + A L G V H + K EP VW EA TQ+FF+LGL FGG
Sbjct: 197 SSLFPYVVLICFLIRALLLNGSVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGG 256
Query: 291 LIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAII 330
+IA+SSYN DNNC+ DA +VSF N TS A +V+FA++
Sbjct: 257 VIAFSSYNKRDNNCHFDAVLVSFINFFTSVLATLVVFAVL 296
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 297 bits (761), Expect = 1e-94
Identities = 138/253 (54%), Positives = 185/253 (73%), Gaps = 3/253 (1%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
+L I GIP+F+LELA+GQR+R+G+IGVWN++ P L GIG AS +V F V LYYN +I W
Sbjct: 46 LLIIIGIPLFFLELAVGQRIRRGSIGVWNYICPRLGGIGYASCLVCFFVGLYYNVIIGWS 105
Query: 61 LFYFAQSFRAQLPWAECPTRVFPNGS-SLVEPECLASTPTEYFWYRTTLDISPSIDEPNG 119
+FYF +SF+ LPW+ECP NGS ++VE EC S+ T YFWYR LDIS SI E G
Sbjct: 106 IFYFFKSFQYPLPWSECPIV--RNGSVAVVEAECEKSSATTYFWYREALDISNSISESGG 163
Query: 120 FNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLS 179
NW++ L++AW++V L M+KGI SS V+Y +S+FPY+VL+ F +RG+ L G G+
Sbjct: 164 LNWKMTLCLLVAWSIVGLAMIKGIQSSGKVMYFSSLFPYVVLVCFLVRGLLLRGAVDGIL 223
Query: 180 HLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCC 239
H+FTPK + +P VW EA TQ+FF+LGL FGG+IA+SSYN DNNC+ DA +VSF N
Sbjct: 224 HMFTPKLDKMLDPQVWREAATQVFFALGLGFGGVIAFSSYNKQDNNCHFDAALVSFINFF 283
Query: 240 TSMFAAIVIFAII 252
TS+ A +V+FA++
Sbjct: 284 TSVLATLVVFAVL 296
Score = 85.0 bits (210), Expect = 1e-17
Identities = 45/100 (45%), Positives = 62/100 (62%), Gaps = 9/100 (9%)
Query: 240 TSMFAAIVIFAIIETASLRLGEV----HWYMLK-----EPHVWLEAGTQIFFSLGLAFGG 290
+S+F +V+ + L G V H + K +P VW EA TQ+FF+LGL FGG
Sbjct: 197 SSLFPYVVLVCFLVRGLLLRGAVDGILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGG 256
Query: 291 LIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAII 330
+IA+SSYN DNNC+ DA +VSF N TS A +V+FA++
Sbjct: 257 VIAFSSYNKQDNNCHFDAALVSFINFFTSVLATLVVFAVL 296
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 294 bits (753), Expect = 3e-94
Identities = 136/253 (53%), Positives = 184/253 (72%), Gaps = 3/253 (1%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
+L + GIP+F+LEL++GQR+R+G+IGVWN++SP L GIG AS +V VALYYN +I W
Sbjct: 46 LLIVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGGIGFASCIVCLFVALYYNVIIGWS 105
Query: 61 LFYFAQSFRAQLPWAECPTRVFPNGS-SLVEPECLASTPTEYFWYRTTLDISPSIDEPNG 119
LFYF+QSF+ LPW +CP + N S + VEPEC S+ T Y+WYR L+IS SI E G
Sbjct: 106 LFYFSQSFQYPLPWDQCP--LVKNASHTFVEPECEKSSATTYYWYREALNISSSISESGG 163
Query: 120 FNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLS 179
NW++ L+ AW +V L M+KGI SS ++Y +S+FPY+VL F +RG+ L G G+
Sbjct: 164 LNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLACFLVRGLLLNGSVDGIR 223
Query: 180 HLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCC 239
H+FTPK ++ EP VW EA TQ+FF+LGL FGG+IA+SSYN DNNC+ DA +VSF N
Sbjct: 224 HMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNNCHFDAVLVSFINFF 283
Query: 240 TSMFAAIVIFAII 252
TS+ A +V+FA++
Sbjct: 284 TSVLATLVVFAVL 296
Score = 84.6 bits (209), Expect = 2e-17
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 269 EPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFA 328
EP VW EA TQ+FF+LGL FGG+IA+SSYN DNNC+ DA +VSF N TS A +V+FA
Sbjct: 235 EPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNNCHFDAVLVSFINFFTSVLATLVVFA 294
Query: 329 II 330
++
Sbjct: 295 VL 296
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins
implicates B0AT1 in more complex processes such as
glomerular structure, exocytosis, and blood pressure
control. The autosomal recessive disorder, Hartnup
disorder, is caused by mutations in B0AT1. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 581
Score = 282 bits (724), Expect = 2e-89
Identities = 131/252 (51%), Positives = 177/252 (70%), Gaps = 3/252 (1%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
+L EGIP+ +LE AIGQRLRKG++GVW+ + P L G+GIAS VSF V+LYYNT+IAW
Sbjct: 46 LLVFEGIPLLHLEFAIGQRLRKGSVGVWSTIHPTLKGVGIASMCVSFLVSLYYNTIIAWV 105
Query: 61 LFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGF 120
++YF SF+ LPW++CP + N + + PEC S+P +YFWYR TL+ S SID+ G
Sbjct: 106 MWYFFNSFQEPLPWSQCP--LNENRTGYI-PECAKSSPVDYFWYRETLNTSTSIDDSGGI 162
Query: 121 NWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSH 180
W + L AW V+Y+C ++GI ++ VYVTS PY+VL +F +RG+TL G +G+
Sbjct: 163 QWWMVLCLACAWGVLYVCTIRGIETTGKAVYVTSTLPYLVLTIFLIRGLTLKGSVNGIKF 222
Query: 181 LFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
LFTP L P WL+AG Q+F+S LAFGGLI++SSYN V NNC +DA I+S N T
Sbjct: 223 LFTPDINELANPVTWLDAGAQVFYSFSLAFGGLISFSSYNSVHNNCEKDAVIISVINGFT 282
Query: 241 SMFAAIVIFAII 252
S++AA VI++II
Sbjct: 283 SIYAATVIYSII 294
Score = 85.3 bits (211), Expect = 1e-17
Identities = 37/64 (57%), Positives = 47/64 (73%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVI 326
L P WL+AG Q+F+S LAFGGLI++SSYN V NNC +DA I+S N TS +AA VI
Sbjct: 231 LANPVTWLDAGAQVFYSFSLAFGGLISFSSYNSVHNNCEKDAVIISVINGFTSIYAATVI 290
Query: 327 FAII 330
++II
Sbjct: 291 YSII 294
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
transporter TauT, and related proteins; solute-binding
domain. This subgroup represents the solute-binding
domain of TauT-like Na(+)- and Cl(-)-dependent
transporters. Family members include: human TauT which
transports taurine, human GAT1, GAT2, and GAT3, and
BGT1, which transport gamma-aminobutyric acid (GABA),
and human CT1 which transports creatine. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 543
Score = 264 bits (677), Expect = 8e-83
Identities = 108/264 (40%), Positives = 150/264 (56%), Gaps = 14/264 (5%)
Query: 2 LAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCL 61
L + GIPIF+LE+A+GQ +G I W + P GIG ASAV+ F + +YY ++AW L
Sbjct: 47 LVLCGIPIFFLEVALGQYTSQGGITAWK-ICPLFKGIGYASAVIVFWLNIYYIVILAWAL 105
Query: 62 FYFAQSFRAQLPWAEC-----------PTRVFPNGSSLVEPECLAS--TPTEYFWYRTTL 108
FY SF ++LPW C + + +P E FW R L
Sbjct: 106 FYLFNSFTSELPWTTCDNWWNTECCVETYSNNNLSNLTKNCSNNTNSTSPVEEFWERRVL 165
Query: 109 DISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
IS I++ W++A L+LAW + Y C+ KG+ S+ VVY T+ FPY++LI+ +RG
Sbjct: 166 GISDGIEDIGSIRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYVMLIILLIRG 225
Query: 169 ITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYR 228
+TLPG S G+ P L +P VW++AGTQIFFS G+ G L A SYN +NNCY+
Sbjct: 226 VTLPGASDGIYFYLKPDLTKLLDPQVWIDAGTQIFFSYGIGLGSLTALGSYNKFNNNCYK 285
Query: 229 DAFIVSFTNCCTSMFAAIVIFAII 252
D+ I+ F N TS FA IF+I+
Sbjct: 286 DSIILCFLNSGTSFFAGFAIFSIL 309
Score = 93.0 bits (232), Expect = 3e-20
Identities = 34/64 (53%), Positives = 44/64 (68%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVI 326
L +P VW++AGTQIFFS G+ G L A SYN +NNCY+D+ I+ F N TS FA I
Sbjct: 246 LLDPQVWIDAGTQIFFSYGIGLGSLTALGSYNKFNNNCYKDSIILCFLNSGTSFFAGFAI 305
Query: 327 FAII 330
F+I+
Sbjct: 306 FSIL 309
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 254 bits (651), Expect = 5e-79
Identities = 118/271 (43%), Positives = 160/271 (59%), Gaps = 11/271 (4%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
ML G+P+FY+ELA+GQ R G I VW + P G+G A +++F VA YYNT+IAW
Sbjct: 46 MLIFGGLPLFYMELALGQYHRSGCITVWRKICPIFKGVGYAICIIAFYVAFYYNTIIAWA 105
Query: 61 LFYFAQSFRAQLPWAECP--------TRVFPNGSSLVEPEC-LASTPTEYFWYRTTLDI- 110
L+Y SF ++LPW C T V +S +P E F+ R L++
Sbjct: 106 LYYLFSSFTSELPWTSCNNPWNTPNCTDVSNRNNSSSSNGTWTLHSPAEEFFERKVLELQ 165
Query: 111 -SPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGI 169
S ID+ G WQ+A L + +VY + KG+ SS VV+VT+ PY+VL + +RG+
Sbjct: 166 KSEGIDDLGGPKWQLALCLFAVFIIVYFSLWKGVKSSGKVVWVTATMPYVVLSILLIRGL 225
Query: 170 TLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRD 229
TLPG S G+ + TP W LK+P VW++A TQIFFSLG FG L+A SSYN NNCYRD
Sbjct: 226 TLPGASDGIKYYLTPNWSKLKDPKVWIDAATQIFFSLGPGFGVLLALSSYNKFHNNCYRD 285
Query: 230 AFIVSFTNCCTSMFAAIVIFAIIETASLRLG 260
A I S NC TS F+ VIF+++ + +
Sbjct: 286 ALITSSINCLTSFFSGFVIFSVLGYMAHKQN 316
Score = 99.3 bits (248), Expect = 2e-22
Identities = 40/67 (59%), Positives = 48/67 (71%)
Query: 264 WYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAA 323
W LK+P VW++A TQIFFSLG FG L+A SSYN NNCYRDA I S NC TS F+
Sbjct: 242 WSKLKDPKVWIDAATQIFFSLGPGFGVLLALSSYNKFHNNCYRDALITSSINCLTSFFSG 301
Query: 324 IVIFAII 330
VIF+++
Sbjct: 302 FVIFSVL 308
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
transporters; solute-binding domain. This family
represents the solute-binding domain of SLC6 proteins
(also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family). These use sodium and chloride
electrochemical gradients to catalyze the
thermodynamically uphill movement of a variety of
substrates, and include neurotransmitter transporters
(NTTs). The latter are Na+/Cl--dependent plasma membrane
transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NTTs are widely expressed in the
mammalian brain, and are involved in regulating
neurotransmitter signaling and homeostasis, through
facilitating the uptake of released neurotransmitters
from the extracellular space into neurons and glial
cells. NTTs are the target of a range of therapeutic
drugs for the treatment of psychiatric diseases, such as
major depression, anxiety disorders, attention deficit
hyperactivity disorder and epilepsy. In addition, they
are the primary targets of cocaine, amphetamines and
other psychostimulants. This family also includes
Drosophila Blot which is expressed primarily in
epithelial tissues of ectodermal origin and in the
nervous system of the embryo and larvae, but in addition
found in the developing oocyte and the freshly laid egg.
A lack or reduction of Blot function during oogenesis
results in early arrest of embryonic development. 12
transmembrane helices (TMs) appears to be common for
eukaryotic and some prokaryotic and archaeal SLC6s, (a
core inverted topology repeat, TM1-5 and TM6-10, plus
TMs11-12; TMs numbered to conform to the SLC6 Aquifex
aeolicus LeuT), although a majority of bacterial, and
some archaeal SLC6s lack TM12, for example the
functional Fusobacterium nucleatum tyrosine transporter
Tyt1.
Length = 417
Score = 249 bits (639), Expect = 2e-78
Identities = 105/252 (41%), Positives = 138/252 (54%), Gaps = 51/252 (20%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
ML + GIP+F+LELA+GQ +G +G + + P G+G A V+SF VA+YYN +IAW
Sbjct: 45 MLLLVGIPLFFLELALGQYTSRGPVGAFWRICPLFKGVGYAQVVISFLVAIYYNVIIAWT 104
Query: 61 LFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGF 120
L+Y SF
Sbjct: 105 LYYLFASF---------------------------------------------------I 113
Query: 121 NWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSH 180
NW++A L+LAW +VYLC+ KG+ SS VVY T+ FPY+VL + +RG+TLPG G+ +
Sbjct: 114 NWELALCLLLAWILVYLCIFKGVKSSGKVVYFTATFPYVVLFILLIRGVTLPGAGDGILY 173
Query: 181 LFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
TP W L +P VW A TQIFFSL + FGGLI Y+SYN DNN YRDA IVS N T
Sbjct: 174 FLTPDWSKLLDPKVWYAAATQIFFSLSIGFGGLITYASYNKFDNNIYRDALIVSILNTLT 233
Query: 241 SMFAAIVIFAII 252
S+ A VIF+++
Sbjct: 234 SLLAGFVIFSVL 245
Score = 112 bits (282), Expect = 4e-27
Identities = 43/83 (51%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 264 WYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAA 323
W L +P VW A TQIFFSL + FGGLI Y+SYN DNN YRDA IVS N TS A
Sbjct: 179 WSKLLDPKVWYAAATQIFFSLSIGFGGLITYASYNKFDNNIYRDALIVSILNTLTSLLAG 238
Query: 324 IVIFAIIERTGLIAYSSYNPVDN 346
VIF+++ G +A+ PV +
Sbjct: 239 FVIFSVL---GFLAHELGVPVAD 258
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 248 bits (634), Expect = 2e-76
Identities = 112/272 (41%), Positives = 156/272 (57%), Gaps = 13/272 (4%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
MLA GIP+F++EL++GQ G + VW P GIG +VS V +YYN +IAW
Sbjct: 46 MLAFCGIPLFFMELSLGQYGSLGPLTVWK-CCPIFKGIGYGMLLVSGLVCIYYNVIIAWT 104
Query: 61 LFYFAQSFRAQLPWAEC----------PTRVFPNGSSLVEPECLASTPTEYFWYRTTLDI 110
LFY SF + LPW C RV N +L +P+E +W R L I
Sbjct: 105 LFYLFASFTSVLPWEHCGNWWNTESCLEHRVKDNMGALPVNLTRTVSPSEEYWNRRVLGI 164
Query: 111 --SPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
S I +P W++A L+LAW +V+ C+ KG+ SS VVY T+ FPY++LIV +RG
Sbjct: 165 QGSSGIGDPGEVRWELALCLLLAWVIVFFCLFKGVKSSGKVVYFTATFPYIILIVLLVRG 224
Query: 169 ITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYR 228
+TL G G+ TP ++ L VW +A +QIF+SLG+ FGGL+ +SYN +NN YR
Sbjct: 225 VTLEGALKGIQFYLTPDFHRLASSQVWYDAASQIFYSLGIGFGGLLTMASYNKFNNNIYR 284
Query: 229 DAFIVSFTNCCTSMFAAIVIFAIIETASLRLG 260
D I++ NC TS+FA IF+++ + LG
Sbjct: 285 DTLIITLGNCITSVFAGFAIFSVLGHMAHELG 316
Score = 87.9 bits (218), Expect = 1e-18
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 264 WYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAA 323
++ L VW +A +QIF+SLG+ FGGL+ +SYN +NN YRD I++ NC TS FA
Sbjct: 242 FHRLASSQVWYDAASQIFYSLGIGFGGLLTMASYNKFNNNIYRDTLIITLGNCITSVFAG 301
Query: 324 IVIFAII 330
IF+++
Sbjct: 302 FAIFSVL 308
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin
transporter SERT; solute-binding domain. SERT (also
called 5-HTT), is a transmembrane transporter that
transports the neurotransmitter serotonin from synaptic
spaces into presynaptic neurons. The antiport of a K+
ion is believed to follow the transport of serotonin and
promote the reorientation of SERT for another transport
cycle. Human SERT is encoded by the SLC6A4 gene. SERT is
expressed in brain, peripheral nervous system, placenta,
epithelium, and platelets. SERT may play a role in
diseases or disorders including anxiety, depression,
autism, gastrointestinal disorders, premature
ejaculation, and obesity. It may also have a role in
social cognition. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 537
Score = 241 bits (616), Expect = 6e-74
Identities = 131/373 (35%), Positives = 183/373 (49%), Gaps = 39/373 (10%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
M GIP+FY+ELA+GQ R G I +W + P GIG A +++ VA YYNT+IAW
Sbjct: 46 MAIFGGIPLFYMELALGQYHRTGCISIWRKICPIFKGIGYAICIIALYVASYYNTIIAWA 105
Query: 61 LFYFAQSFRAQLPWAECPTR------VFPNGSSLVEPECLASTPTEYFWYRTTLDI--SP 112
L+Y SF LPW C + +++P E F+ R L + S
Sbjct: 106 LYYLISSFATTLPWTSCDNSWNTGNCTNYFAKDNITWTLHSTSPAEEFYTRHVLQVHRST 165
Query: 113 SIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLP 172
+ + G +WQ+A L L +T+VY + KG+ +S VV+VT+ FPY+VL + +RG TLP
Sbjct: 166 GLGDLGGISWQLALCLFLIFTIVYFSIWKGVKTSGKVVWVTATFPYIVLFILLIRGATLP 225
Query: 173 GMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFI 232
G G+ + PKW+ L E VW++A QIFFSLG FG L+A+SSYN NNCY+DA +
Sbjct: 226 GAWRGVVYYLKPKWHKLLETGVWVDAAAQIFFSLGPGFGVLLAFSSYNKFHNNCYQDALV 285
Query: 233 VSFTNCCTSMFAAIVIFAIIETASLRLGEVHWYMLKEPHVWL------EAGTQ------- 279
S NC TS + VIF ++ + E + + L EA
Sbjct: 286 TSVVNCLTSFVSGFVIFTVLGYMAEMRNEDVIEVATDAGPSLLFITYAEAIANMPGSTFF 345
Query: 280 --IFF----SLGL--AFGGL----IAYSSYNPVDNNCYRDAFIVSFTNCC------TSTF 321
IFF +LGL FGGL A P R+ F++ C T TF
Sbjct: 346 AIIFFLMIITLGLDSTFGGLEGVITAVLDEFPHVIGKRREIFVLGLVIVCFLGSLATLTF 405
Query: 322 AAIVIFAIIERTG 334
+ ++E
Sbjct: 406 GGAYVVKLLEEYA 418
Score = 77.5 bits (191), Expect = 3e-15
Identities = 37/115 (32%), Positives = 48/115 (41%), Gaps = 44/115 (38%)
Query: 264 WYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAA 323
W+ L E VW++A QIFFSLG FG L+A+SSYN N
Sbjct: 239 WHKLLETGVWVDAAAQIFFSLGPGFGVLLAFSSYNKFHN--------------------- 277
Query: 324 IVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKA 378
NCY+DA + S NC TS + VIF ++G+ A
Sbjct: 278 -----------------------NCYQDALVTSVVNCLTSFVSGFVIFTVLGYMA 309
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain. SERT-like
Na(+)- and Cl(-)-dependent monoamine transporters,
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: the
norepinephrine transporter NET, the serotonin
transporter SERT , and the dopamine transporter DAT1.
These latter may play a role in diseases or disorders
including depression, anxiety disorders, and
attention-deficit hyperactivity disorder, and in the
control of human behavior and emotional states. They
belongs to the solute carrier 6 (SLC6) transporter
family. Members of this subgroup are uncharacterized.
Length = 552
Score = 228 bits (582), Expect = 8e-69
Identities = 110/285 (38%), Positives = 150/285 (52%), Gaps = 25/285 (8%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
ML + GIP+FY+ELA+GQ RKGAI W + P GIG A +++F V +YN +IAW
Sbjct: 46 MLVVGGIPLFYMELALGQYYRKGAITSWGRICPLFKGIGYAVVLIAFYVDFFYNVIIAWS 105
Query: 61 LFYFAQSFRAQLPWAEC--------------------PTRVFPNGSSL----VEPECLAS 96
L+YF SF LPW C P R S E S
Sbjct: 106 LYYFFASFTFNLPWTSCNNSWNTPNCYEPHWSEDGTVPCRSANQSFSATNISAAEENFTS 165
Query: 97 TPTEYF-WYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSM 155
EYF L +S + + WQI L + + Y + KGI +S VV+ T++
Sbjct: 166 AALEYFERGVLELHVSRGVTDLGNIRWQILLCLFAVYLICYFSLWKGIHTSGKVVWFTAL 225
Query: 156 FPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIA 215
FPY+VL + +RG+TLPG +G+ + P + LK VW++A TQ+FFSLG FG L+A
Sbjct: 226 FPYVVLFILLIRGVTLPGSQNGIEYYLRPNFEALKSAEVWVDAATQVFFSLGPGFGVLLA 285
Query: 216 YSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLG 260
Y+SYN NN YRDA + S NC TS + VIF+++ + R G
Sbjct: 286 YASYNKFHNNVYRDALVTSSINCLTSFLSGFVIFSVLGYMACRSG 330
Score = 86.7 bits (215), Expect = 3e-18
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 264 WYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAA 323
+ LK VW++A TQ+FFSLG FG L+AY+SYN NN YRDA + S NC TS +
Sbjct: 256 FEALKSAEVWVDAATQVFFSLGPGFGVLLAYASYNKFHNNVYRDALVTSSINCLTSFLSG 315
Query: 324 IVIFAIIERTGLIAYSSYNPVD 345
VIF+++ G +A S P++
Sbjct: 316 FVIFSVL---GYMACRSGKPIE 334
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine
transporter 1; solute-binding domain. CT1 (also called
CRTR, CRT) transports creatine. Human CT1 is encoded by
the SLC6A8 gene. CT1 is ubiquitously expressed, with
highest levels found in skeletal muscle and kidney.
Creatine is absorbed from food or synthesized from
arginine and plays an important role in energy
metabolism. Deficiency in human CT1 leads to X-linked
cerebral creatine transporter deficiency. In males, this
disorder is characterized by language and speech delays,
autistic-like behavior, seizures in about 50% of cases,
and can also involve midfacial hypoplasia, and short
stature. In females, it is characterized by mild
cognitive impairment with behavior and learning
problems. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 592
Score = 222 bits (567), Expect = 3e-66
Identities = 107/273 (39%), Positives = 153/273 (56%), Gaps = 25/273 (9%)
Query: 4 IEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFY 63
+ GIP+F+LE+A+GQ +++G I WN ++P G+G AS V+ F YY ++ W L+Y
Sbjct: 49 VGGIPVFFLEIALGQFMKQGGINAWN-IAPLFKGLGYASMVIVFFCNTYYIMILVWGLYY 107
Query: 64 FAQSFRAQLPWAECP--------TRVFP-----NGS-------SLVEPECLA----STPT 99
SF LPWA C T +F NGS + + C +P
Sbjct: 108 LVHSFTNTLPWATCGHPWNTENCTEIFRHEDCANGSLANSWSQTFLNLSCDELANKRSPV 167
Query: 100 EYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYM 159
FW L +S ++EP NW++ L+ W +VY C+ KG+ S+ +VY T++FPY+
Sbjct: 168 IEFWENKVLRLSGGLEEPGALNWEMILCLLATWVIVYFCVWKGVKSTGKIVYFTALFPYV 227
Query: 160 VLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSY 219
VLIV + G+TLPG G+ + P W L E VW++AGTQIFFS + G L A SY
Sbjct: 228 VLIVLLVHGVTLPGALDGIIYYLKPDWSKLGEAQVWIDAGTQIFFSYAIGLGALTALGSY 287
Query: 220 NPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAII 252
N NNCYRDAFI++ N TS FA V+F+++
Sbjct: 288 NRFHNNCYRDAFILALINSGTSFFAGFVVFSVL 320
Score = 81.1 bits (200), Expect = 3e-16
Identities = 35/67 (52%), Positives = 44/67 (65%)
Query: 264 WYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAA 323
W L E VW++AGTQIFFS + G L A SYN NNCYRDAFI++ N TS FA
Sbjct: 254 WSKLGEAQVWIDAGTQIFFSYAIGLGALTALGSYNRFHNNCYRDAFILALINSGTSFFAG 313
Query: 324 IVIFAII 330
V+F+++
Sbjct: 314 FVVFSVL 320
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5;
solute-binding domain. Human NTT5 is encoded by the
SLC6A16 gene. NTT5 is expressed in testis, pancreas, and
prostate; its expression is predominantly intracellular,
indicative of a vesicular location. Its substrates are
unknown. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 543
Score = 219 bits (559), Expect = 2e-65
Identities = 105/252 (41%), Positives = 151/252 (59%), Gaps = 5/252 (1%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
ML + GIP+ +LE+A+GQRL++G+I VW +SP+ G+G +S + F VALYYN V +W
Sbjct: 46 MLFLVGIPLLFLEMAVGQRLQQGSIRVWKAISPWFGGVGYSSVLACFLVALYYNVVNSWA 105
Query: 61 LFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGF 120
LFY SF+ LPW +CP SS PEC +TP+ YFWY+ TL S I++
Sbjct: 106 LFYLGHSFQFPLPWEQCP---LVKNSSD--PECARTTPSGYFWYQKTLKASDRIEDGGSL 160
Query: 121 NWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSH 180
+A +L +AW +VY+ M++G+ S+ + + PY++L+ +R + L G GL
Sbjct: 161 VGHLALSLFVAWCLVYVTMIRGLKSTGKSIIFLVLLPYVILLCLLIRSLFLEGAFFGLLW 220
Query: 181 LFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
L K L +W AG Q+ FSLGL FG LI Y+SY P NNC DAF+V+ N T
Sbjct: 221 LLVAKVSSLANLSIWRVAGGQVLFSLGLGFGTLITYASYMPRKNNCLTDAFVVALVNLLT 280
Query: 241 SMFAAIVIFAII 252
S+ A + FA++
Sbjct: 281 SLIATPIFFAVM 292
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 215 bits (549), Expect = 1e-63
Identities = 107/256 (41%), Positives = 150/256 (58%), Gaps = 8/256 (3%)
Query: 2 LAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCL 61
L G+P+F LE ++GQ G +GVW ++P G+G+A+AV+SF + +YY +IAW +
Sbjct: 89 LIFAGVPLFLLECSLGQYTSIGGLGVWK-LAPMFKGVGLAAAVLSFWLNIYYIVIIAWAI 147
Query: 62 FYFAQSFRAQLPWAECPT-----RVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDE 116
+Y SF LPW C R F N S+ + S E FW R ++ +++
Sbjct: 148 YYLYNSFTTTLPWKSCDNPWNTDRCFSN-YSMANTTNMTSAVVE-FWERNMHQMTDGLEK 205
Query: 117 PNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSH 176
P W +A L +AW +VY C+ KG+ + VVY ++ +PY++L + F RG+TLPG
Sbjct: 206 PGQIRWPLAITLAIAWVLVYFCIWKGVGWTGKVVYFSATYPYIMLFILFFRGVTLPGAKE 265
Query: 177 GLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFT 236
G+ TP + L + VWL+A TQIFFS GL G LIA SYNP NN YRD+ IV
Sbjct: 266 GILFYITPNFSKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNPFHNNVYRDSIIVCCI 325
Query: 237 NCCTSMFAAIVIFAII 252
N CTSMFA VIF+I+
Sbjct: 326 NSCTSMFAGFVIFSIV 341
Score = 83.1 bits (205), Expect = 5e-17
Identities = 41/80 (51%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVI 326
L + VWL+A TQIFFS GL G LIA SYNP NN YRD+ IV N CTS FA VI
Sbjct: 278 LSDSEVWLDAATQIFFSYGLGLGSLIALGSYNPFHNNVYRDSIIVCCINSCTSMFAGFVI 337
Query: 327 FAIIERTGLIAYSSYNPVDN 346
F+I+ G +A+ + P+ +
Sbjct: 338 FSIV---GFMAHVTKRPIAD 354
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 214 bits (545), Expect = 5e-63
Identities = 119/291 (40%), Positives = 157/291 (53%), Gaps = 41/291 (14%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
MLA+ GIPIF+LE+++GQ +G + VW + P L G GIA ++S +A+YYN ++ +
Sbjct: 46 MLALAGIPIFFLEVSLGQFASQGPVSVWKAI-PALQGCGIAMLIISVLIAIYYNIIMCYT 104
Query: 61 LFYFAQSFRAQLPWAECPT-----------------------------------RVFPNG 85
LFY S LPWA C +PN
Sbjct: 105 LFYLFASLVEVLPWASCNNPWNTPECKDKDKLLLDSCIISDHPKIQIKNSTFCMTAYPNL 164
Query: 86 SSL----VEPECLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMK 141
+ + V + S EYF Y L IS I+ P W +A L LAW +VY + K
Sbjct: 165 TMVNFTSVGNKTFVSGSEEYFKY-NVLKISAGIEYPGEIRWPLALCLFLAWVIVYASLAK 223
Query: 142 GIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQ 201
GI SS VVY T+ FPY+VL++ +RG+TLPG G+ + TPKW L + VW +A TQ
Sbjct: 224 GIKSSGKVVYFTATFPYVVLVILLIRGVTLPGAGAGIWYFITPKWEKLNDATVWKDAATQ 283
Query: 202 IFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAII 252
IFFSL A+GGLI SSYN NNCYRD IV+ TN TS+FA VIF++I
Sbjct: 284 IFFSLSAAWGGLITLSSYNKFHNNCYRDTLIVTCTNSATSIFAGFVIFSVI 334
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine
transporter ATB0+; solute-binding domain. ATB0+ (also
known as the beta-alanine carrier) is a transmembrane
transporter with a broad substrate specificity; it can
transport non-alpha-amino acids such as beta-alanine
with low affinity, and can transport dipolar and
cationic amino acids such as leucine and lysine, with a
higher affinity. It may have a role in the absorption of
essential nutrients and drugs in the distal regions of
the human gastrointestinal tract. Human ATB0+ is encoded
by the SLC6A14 gene. ATB0+ is expressed in the lung,
trachea, salivary gland, mammary gland, stomach, and
pituitary gland. ATB0+ may play a role in obesity, and
its upregulation may have a pathogenic role in
colorectal cancer. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 601
Score = 211 bits (540), Expect = 3e-62
Identities = 108/285 (37%), Positives = 156/285 (54%), Gaps = 34/285 (11%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
MLA+ G+P+F+LE ++GQ G I VW P L G+GI +VS V++YYN +IA+
Sbjct: 46 MLALAGLPLFFLECSLGQFASLGPISVWR-AVPLLQGVGITMVLVSTFVSIYYNVIIAYS 104
Query: 61 LFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLAST----------------------- 97
L+Y SF++ LPW++C + N S+ C S
Sbjct: 105 LYYMFASFQSPLPWSDCSSWADENCSTSPITHCNVSLANNGIHENKSWVDSNNLTCINIS 164
Query: 98 --------PTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFV 149
P+E +W + L S +DE W +A L+LAW +V + KGI SS V
Sbjct: 165 IIYQPGQLPSEQYWDKVALQRSSGMDETGPIVWYLALCLLLAWIIVGAALFKGIKSSGKV 224
Query: 150 VYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYM--LKEPHVWLEAGTQIFFSLG 207
VY T++FPY+VL++ +RG TL G G+ + + + L E VW +A TQIF+SL
Sbjct: 225 VYFTALFPYVVLLILLVRGATLEGAKDGIEYYIGSQSNLTKLMEAEVWKDAATQIFYSLS 284
Query: 208 LAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAII 252
+A+GGL+A SSYN NNC+ DA +V TNC TS+FA IF+++
Sbjct: 285 VAWGGLVALSSYNKFHNNCFSDAIVVCVTNCLTSVFAGFAIFSVL 329
Score = 88.3 bits (219), Expect = 1e-18
Identities = 39/79 (49%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVI 326
L E VW +A TQIF+SL +A+GGL+A SSYN NNC+ DA +V TNC TS FA I
Sbjct: 266 LMEAEVWKDAATQIFYSLSVAWGGLVALSSYNKFHNNCFSDAIVVCVTNCLTSVFAGFAI 325
Query: 327 FAIIERTGLIAYSSYNPVD 345
F+++ G +A+ PV
Sbjct: 326 FSVL---GHMAHVLKKPVS 341
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture of
taurine. It may also participate in re-absorbing taurine
that has been deconjugated from bile acids in the distal
lumen. Functional TauT protects kidney cells from
nephrotoxicity caused by the chemotherapeutic agent
cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to be
important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 207 bits (528), Expect = 5e-61
Identities = 95/265 (35%), Positives = 141/265 (53%), Gaps = 25/265 (9%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFA 65
G+P+F+LE+A+GQ +G I W + P GIG AS V+ + +YY ++AW L+Y
Sbjct: 51 GLPVFFLEVALGQYTSEGGITCWEKLCPIFTGIGYASIVIVSLLNIYYIVILAWGLYYLF 110
Query: 66 QSFRAQLPWAECPTRVFPNGSSLVEPECLAST------------------PTEYFWYRTT 107
QSF+++LPWA C S P C+ T P FW R
Sbjct: 111 QSFQSELPWAHC-------NQSWNTPNCVEDTLRKNKTLWASINATNFTSPVTEFWERNV 163
Query: 108 LDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLR 167
L +S I+ W +A L+L W + + C+ KG+ S+ VVY T+ FP+++LIV +R
Sbjct: 164 LSLSSGIEHVGTIKWDLALCLLLVWVICFFCIWKGVKSTGKVVYFTATFPFLMLIVLLIR 223
Query: 168 GITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCY 227
G+TLPG + G+ P L +P VW++AGTQIFFS + G + + SYN NCY
Sbjct: 224 GVTLPGAAEGIKFYLYPDITRLGDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKYKYNCY 283
Query: 228 RDAFIVSFTNCCTSMFAAIVIFAII 252
RD ++ N TS + IF+++
Sbjct: 284 RDCMLLGCLNSGTSFVSGFAIFSVL 308
Score = 65.6 bits (160), Expect = 2e-11
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVI 326
L +P VW++AGTQIFFS + G + + SYN NCYRD ++ N TS + I
Sbjct: 245 LGDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKYKYNCYRDCMLLGCLNSGTSFVSGFAI 304
Query: 327 FAII 330
F+++
Sbjct: 305 FSVL 308
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter
2; solute-binding domain. This family includes human
GAT2 (hGAT2) which transports gamma-aminobutyric acid
(GABA). GABA is the main inhibitory neurotransmitter
within the mammalian CNS. hGAT2 is encoded by the
SLC6A13 gene, and is similar to mouse GAT-3, and rat
GAT2. hGAT2 is expressed in brain, kidney, lung, and
testis. hGAT2 is a potential drug target for treatment
of epilepsy. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 544
Score = 206 bits (525), Expect = 1e-60
Identities = 103/255 (40%), Positives = 140/255 (54%), Gaps = 8/255 (3%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFA 65
GIP+F+LE A+GQ +G + W + P GIG AS V+ + YY V+AW LFY
Sbjct: 51 GIPVFFLETALGQYTSQGGVTCWRKICPLFEGIGYASQVIVALLNFYYIIVLAWALFYLF 110
Query: 66 QSFRAQLPWAECP--------TRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEP 117
SF +LPW+ C S+ A++P FW R L IS I+
Sbjct: 111 NSFTWELPWSSCNHTWNTENCVEFQKRNYSVNVTLENATSPVIEFWERRVLRISDGIEHI 170
Query: 118 NGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHG 177
W++A L+LAW + Y C+ KG+ S+ VVY T+ FPY++L+V +RG+TLPG S G
Sbjct: 171 GSLRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLIRGVTLPGASLG 230
Query: 178 LSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTN 237
+ P L +P VW++AGTQIFFS + G L A SYN +NNCYRD + F N
Sbjct: 231 IQFYLYPDLSRLADPQVWMDAGTQIFFSYAICLGCLTALGSYNKYNNNCYRDCIALCFLN 290
Query: 238 CCTSMFAAIVIFAII 252
TS A IF+I+
Sbjct: 291 SGTSFVAGFAIFSIL 305
Score = 71.4 bits (175), Expect = 3e-13
Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVI 326
L +P VW++AGTQIFFS + G L A SYN +NNCYRD + F N TS A I
Sbjct: 242 LADPQVWMDAGTQIFFSYAICLGCLTALGSYNKYNNNCYRDCIALCFLNSGTSFVAGFAI 301
Query: 327 FAIIERTGLIAYSSYNPV 344
F+I+ G +AY P+
Sbjct: 302 FSIL---GFMAYEQGVPI 316
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine
transporter GlyT1; solute-binding domain. GlyT1 is a
membrane-bound transporter that re-uptakes glycine from
the synaptic cleft. Human GlyT1 is encoded by the SLC6A9
gene. GlyT1 is expressed in brain, pancreas, uterus,
stomach, spleen, liver, and retina. GlyT1 may play a
role in schizophrenia. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 585
Score = 203 bits (518), Expect = 3e-59
Identities = 111/284 (39%), Positives = 158/284 (55%), Gaps = 25/284 (8%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
ML GIP+F++EL+ GQ +G +GVW VSP G+G VVS + +YYN VI
Sbjct: 62 MLVFCGIPLFFMELSFGQFASQGCLGVW-RVSPMFKGVGYGMMVVSTYIGIYYNVVICIA 120
Query: 61 LFYFAQSFRAQLPWAEC------------------------PTRVFPNGSSLVEPECLAS 96
+YF S LPW C + V N + L+ +
Sbjct: 121 FYYFFMSMTRVLPWTYCNNPWNTPDCAGVLSTNRSNATFANMSAVVSNLTELLNRTLKRT 180
Query: 97 TPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMF 156
+P+E +W R L+IS I + L ++W VV+LC+++G+ SS VVY T+ F
Sbjct: 181 SPSEEYWRRYVLNISDDIGNFGEVRLPLLGCLGVSWLVVFLCLIRGVKSSGKVVYFTATF 240
Query: 157 PYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAY 216
PY+VL + F+RGITL G G+ + TP+W + + VW +A +QIF+SLG A+GGLI
Sbjct: 241 PYVVLTILFIRGITLEGAISGIMYYLTPQWDKILDAKVWGDAASQIFYSLGCAWGGLITM 300
Query: 217 SSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLG 260
+SYN NNCYRD+ I+S TNC TS++A VIF+I+ + LG
Sbjct: 301 ASYNKFHNNCYRDSIIISITNCATSVYAGFVIFSILGFMANHLG 344
Score = 82.3 bits (203), Expect = 1e-16
Identities = 36/68 (52%), Positives = 48/68 (70%)
Query: 263 HWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFA 322
W + + VW +A +QIF+SLG A+GGLI +SYN NNCYRD+ I+S TNC TS +A
Sbjct: 269 QWDKILDAKVWGDAASQIFYSLGCAWGGLITMASYNKFHNNCYRDSIIISITNCATSVYA 328
Query: 323 AIVIFAII 330
VIF+I+
Sbjct: 329 GFVIFSIL 336
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA
transporter-1, and related proteins; solute-binding
domain. BGT1 is a relatively low-affinity transporter
of gamma-aminobutyric acid (GABA), and can also
transport betaine. GABA is the main inhibitory
neurotransmitter within the mammalian CNS. Human BGT1 is
encoded by the SLC6A12 gene, and is similar to mouse
GAT2. Mouse GAT2 plays a role in transporting GABA
across the blood-brain barrier. In addition to being
expressed in cells of the central nervous system, BGT1
is expressed in peripheral tissues, including kidney,
liver, and heart. An association has been shown between
the SLC6A12 gene and the occurrence of
aspirin-intolerant asthma, and BGT1 is a drug target for
antiepileptic drugs. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 541
Score = 198 bits (506), Expect = 8e-58
Identities = 98/256 (38%), Positives = 142/256 (55%), Gaps = 9/256 (3%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFA 65
GIP+F+LE A+GQ +G + W + P GIG AS V+ + +YY +++W LFY
Sbjct: 52 GIPLFFLETALGQYTSQGGVTAWRKICPIFEGIGYASQVIESYLNVYYIIILSWALFYLF 111
Query: 66 QSFRAQLPWAECPT-------RVFPNGSSL--VEPECLASTPTEYFWYRTTLDISPSIDE 116
SF + LPWA C F N S P A++P FW + L ++ I +
Sbjct: 112 SSFTSVLPWATCNNPWNSDLCVDFLNHSGADNRTPPENATSPVMEFWEKRVLGLTDGIHK 171
Query: 117 PNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSH 176
W++A L+LAW + Y C+ KG+ S+ VVY T+ FPY++L++ +RG+TLPG +
Sbjct: 172 LGTVRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVILLVRGVTLPGAAE 231
Query: 177 GLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFT 236
G+ P L +P VW++AGTQI FS + G L A SYN NNCYRD ++ F
Sbjct: 232 GIIFYLKPDLSRLADPQVWMDAGTQILFSYAICQGCLTALGSYNKYTNNCYRDCIMLCFL 291
Query: 237 NCCTSMFAAIVIFAII 252
N TS A IF+++
Sbjct: 292 NSATSFVAGFAIFSVL 307
Score = 67.6 bits (165), Expect = 5e-12
Identities = 30/64 (46%), Positives = 39/64 (60%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVI 326
L +P VW++AGTQI FS + G L A SYN NNCYRD ++ F N TS A I
Sbjct: 244 LADPQVWMDAGTQILFSYAICQGCLTALGSYNKYTNNCYRDCIMLCFLNSATSFVAGFAI 303
Query: 327 FAII 330
F+++
Sbjct: 304 FSVL 307
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter
3; solute-binding domain. This family includes human
GAT3 (hGAT3) a high-affinity transporter of
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
hGAT3 is encoded by the SLC6A11 gene, and is similar to
mouse GAT4, and rat GAT3/GATB. GAT3 is expressed
primarily in the glia of the brain, and is a potential
drug target for antiepileptic drugs. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 542
Score = 198 bits (504), Expect = 2e-57
Identities = 103/259 (39%), Positives = 145/259 (55%), Gaps = 14/259 (5%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFA 65
GIP+F+LE A+GQ +G I W V P GIG A+ V+ ++ +YY ++AW +FY
Sbjct: 52 GIPVFFLETALGQFTSEGGITCWRKVCPLFEGIGYATQVIEAHLNVYYIIILAWAIFYLF 111
Query: 66 QSFRAQLPWAECPTRVFPNGSSLVEPECL------------ASTPTEYFWYRTTLDISPS 113
F +LPWA C N + VE + L A++P FW R L IS
Sbjct: 112 NCFTTELPWATCGH--EWNTENCVEFQKLNSSNCSHVSLQNATSPVMEFWERRVLAISDG 169
Query: 114 IDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPG 173
I+ W++A L+ AWT+ Y C+ KG S+ VVYVT+ FPY++L++ +RG+TLPG
Sbjct: 170 IEHIGNLRWELALCLLAAWTICYFCIWKGTKSTGKVVYVTATFPYIMLLILLIRGVTLPG 229
Query: 174 MSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIV 233
S G+ P L +P VW++AGTQIFFS + G L A SYN +NNCYRD ++
Sbjct: 230 ASEGIKFYLYPDLSRLSDPQVWVDAGTQIFFSYAICLGCLTALGSYNNYNNNCYRDCIML 289
Query: 234 SFTNCCTSMFAAIVIFAII 252
N TS A IF+++
Sbjct: 290 CCLNSGTSFVAGFAIFSVL 308
Score = 69.2 bits (169), Expect = 1e-12
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVI 326
L +P VW++AGTQIFFS + G L A SYN +NNCYRD ++ N TS A I
Sbjct: 245 LSDPQVWVDAGTQIFFSYAICLGCLTALGSYNNYNNNCYRDCIMLCCLNSGTSFVAGFAI 304
Query: 327 FAIIERTGLIAYSSYNPV 344
F+++ G +AY P+
Sbjct: 305 FSVL---GFMAYEQGVPI 319
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine
transporter NET; solute-binding domain. NET (also
called NAT1, NET1), is a transmembrane transporter that
transports the neurotransmitter norepinephrine from
synaptic spaces into presynaptic neurons. Human NET is
encoded by the SLC6A2 gene. NET is expressed in brain,
peripheral nervous system, adrenal gland, and placenta.
NET may play a role in diseases or disorders including
depression, orthostatic intolerance, anorexia nervosa,
cardiovascular diseases, alcoholism, and
attention-deficit hyperactivity disorder. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 560
Score = 197 bits (502), Expect = 3e-57
Identities = 104/268 (38%), Positives = 150/268 (55%), Gaps = 21/268 (7%)
Query: 2 LAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCL 61
L I G+P+FY+ELA+GQ R+GA VW + P G+G A +++ V YYN +IAW L
Sbjct: 47 LIIAGMPLFYMELALGQYNREGAATVWK-ICPCFKGVGYAVILIALYVGFYYNVIIAWSL 105
Query: 62 FYFAQSFRAQLPWAEC-----------PT----RVFPNGSSLVEPECLASTPTEYFWYRT 106
+Y SF ++LPW C P V NG+ + + TP F+ R
Sbjct: 106 YYLFSSFTSELPWTTCGNVWNSPNCTDPKLLNASVLGNGTKYSKYKL---TPAAEFYERG 162
Query: 107 TLDI--SPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVF 164
L + S I + WQ+ L + V++ + KG+ +S VV++T+ PY+VL V
Sbjct: 163 VLHLHESAGIHDLGLPRWQLTLCLFVVVIVLFFSLWKGVKTSGKVVWITATLPYVVLFVL 222
Query: 165 FLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDN 224
+ G+TLPG +G++ + LKE VW++A TQIF+SLG FG LIA++SYN DN
Sbjct: 223 LIHGVTLPGAFNGINAYLHIDFKRLKEATVWIDAATQIFYSLGAGFGVLIAFASYNKFDN 282
Query: 225 NCYRDAFIVSFTNCCTSMFAAIVIFAII 252
NCYRDA + S NC TS + IF+I+
Sbjct: 283 NCYRDALLTSTINCVTSFISGFAIFSIL 310
Score = 85.4 bits (211), Expect = 8e-18
Identities = 37/69 (53%), Positives = 48/69 (69%)
Query: 262 VHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTF 321
+ + LKE VW++A TQIF+SLG FG LIA++SYN DNNCYRDA + S NC TS
Sbjct: 242 IDFKRLKEATVWIDAATQIFYSLGAGFGVLIAFASYNKFDNNCYRDALLTSTINCVTSFI 301
Query: 322 AAIVIFAII 330
+ IF+I+
Sbjct: 302 SGFAIFSIL 310
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 193 bits (492), Expect = 1e-55
Identities = 101/264 (38%), Positives = 145/264 (54%), Gaps = 14/264 (5%)
Query: 2 LAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCL 61
+ I G+P+FY+ELA+GQ R+GA GVW + P G+G ++S V +YN +IAW L
Sbjct: 47 MVIAGMPLFYMELALGQFNREGAAGVWK-ICPIFKGVGFTVILISLYVGFFYNVIIAWAL 105
Query: 62 FYFAQSFRAQLPWAEC-----------PTRVFPNGSSLVEPECLASTPTEYFWYRTTLDI 110
FY SF +LPW C +G S + +TP ++ R L +
Sbjct: 106 FYLFSSFTGELPWIHCNNSWNSPNCSDAHPGDSSGDSSGLNDTYKTTPAAEYFERGVLHL 165
Query: 111 --SPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
S I + WQ+ LV+ ++Y + KG+ +S VV++T+ PY+VL LRG
Sbjct: 166 HESHGIHDLGPPRWQLTSCLVVVIVLLYFSLWKGVKTSGKVVWITATMPYVVLTALLLRG 225
Query: 169 ITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYR 228
+TLPG G+ + + L E VW++A TQI FSLG+ FG LIA+SSYN NNCYR
Sbjct: 226 VTLPGAIDGIKAYLSVDFLRLCEASVWIDAATQICFSLGVGFGVLIAFSSYNKFTNNCYR 285
Query: 229 DAFIVSFTNCCTSMFAAIVIFAII 252
DA I + N TS F+ V+F+ +
Sbjct: 286 DAIITTSINSLTSFFSGFVVFSFL 309
Score = 77.3 bits (190), Expect = 3e-15
Identities = 36/69 (52%), Positives = 46/69 (66%)
Query: 262 VHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTF 321
V + L E VW++A TQI FSLG+ FG LIA+SSYN NNCYRDA I + N TS F
Sbjct: 241 VDFLRLCEASVWIDAATQICFSLGVGFGVLIAFSSYNKFTNNCYRDAIITTSINSLTSFF 300
Query: 322 AAIVIFAII 330
+ V+F+ +
Sbjct: 301 SGFVVFSFL 309
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 164 bits (418), Expect = 1e-45
Identities = 81/257 (31%), Positives = 124/257 (48%), Gaps = 34/257 (13%)
Query: 2 LAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCL 61
L GIP+ LE +G + R A + ++ IG +V+F +A YY +IAW L
Sbjct: 47 LLTAGIPLLILEYGLGHKFRGSAPLAFRRINKKFEWIGWWQVLVAFVIATYYAVIIAWAL 106
Query: 62 FYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFN 121
Y SF L W P +F + L +S + GF
Sbjct: 107 SYLFFSF--TLAWG--------------------DDPEAFF-FGDFLQLSDGPFDLGGFV 143
Query: 122 WQIAFALVLAWTVVYLCMMKGI------ASSPFVVYVTSMFPYMVLIVFFLRGITLPGMS 175
W I ALVL W +++ + +G+ A+ F+ + +F ++ +R +TLPG +
Sbjct: 144 WPILIALVLVWLIIWFILYRGVKKGIEKANKIFMPLLFVLF-----LILVIRALTLPGAA 198
Query: 176 HGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSF 235
GL+ LFTP W L +P VW+ A QIFFSL + FG +I Y+SY P ++ +A IV+F
Sbjct: 199 DGLNALFTPDWSALLDPKVWIAAYGQIFFSLSVGFGIMITYASYLPKKSDLTNNALIVAF 258
Query: 236 TNCCTSMFAAIVIFAII 252
N + A I +F+I+
Sbjct: 259 ANSSFEILAGIGVFSIL 275
Score = 79.1 bits (196), Expect = 7e-16
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 242 MFAAIVIFAI--------IETASLRLGEVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIA 293
+F +VI A+ + L W L +P VW+ A QIFFSL + FG +I
Sbjct: 183 LFLILVIRALTLPGAADGLNA----LFTPDWSALLDPKVWIAAYGQIFFSLSVGFGIMIT 238
Query: 294 YSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVD 345
Y+SY P ++ +A IV+F N A I +F+I+ G +A + PV
Sbjct: 239 YASYLPKKSDLTNNALIVAFANSSFEILAGIGVFSIL---GFMAQAQGVPVS 287
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6
subfamily; solute-binding domain. SLC6 proteins (also
called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain, and
are involved in regulating neurotransmitter signaling
and homeostasis, and are the target of a range of
therapeutic drugs for the treatment of psychiatric
diseases. Bacterial members of the SLC6 family include
the LeuT amino acid transporter.
Length = 406
Score = 129 bits (326), Expect = 3e-33
Identities = 68/253 (26%), Positives = 103/253 (40%), Gaps = 56/253 (22%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
L + IPI LELA+GQ R G + +N ++ G+G A F V YY ++AW
Sbjct: 45 ALVLLAIPILILELALGQAYRGGCVKAFNLINRRAKGVGAAVVFGGFVVCTYYVPILAWI 104
Query: 61 LFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGF 120
+ YF SF G F
Sbjct: 105 MVYFRHSFTV--------------GWLA-------------------------------F 119
Query: 121 NWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSH 180
W + W V+ +G+ S+ VVY+T P +++I+ RG +LP G+
Sbjct: 120 TW------FVVWLCVF----RGVGSTGRVVYITMGLPIVLIIILLGRGASLPNAGDGIRL 169
Query: 181 LFTPKWY-MLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCC 239
F L +W A Q+FFS G+ FG + AY+SYN +N +DA I++ +N
Sbjct: 170 YFATWRGDKLASGEIWQAAAGQVFFSTGVGFGYMTAYASYNSKFSNAVQDALIIAGSNSL 229
Query: 240 TSMFAAIVIFAII 252
+ A +F I+
Sbjct: 230 FEIIAGFAVFGIV 242
Score = 67.0 bits (164), Expect = 5e-12
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 256 SLRLGEVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTN 315
L L +W A Q+FFS G+ FG + AY+SYN +N +DA I++ +N
Sbjct: 168 RLYFATWRGDKLASGEIWQAAAGQVFFSTGVGFGYMTAYASYNSKFSNAVQDALIIAGSN 227
Query: 316 CCTSTFAAIVIFAII 330
A +F I+
Sbjct: 228 SLFEIIAGFAVFGIV 242
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 110 bits (278), Expect = 1e-26
Identities = 71/250 (28%), Positives = 102/250 (40%), Gaps = 38/250 (15%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWN--HVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFY 63
GIP+ E AIG+R RK A+G + IG + F + +Y+ + W L Y
Sbjct: 55 GIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWIGWFGVLGGFLILSFYSVIGGWILSY 114
Query: 64 FAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYF-WYRTTLDISPSIDEPNGFNW 122
+S LP T ++ + T+ +
Sbjct: 115 LVKSLTGALP----------------------DTGEQFAQLFGQTISNPGLA-----VIF 147
Query: 123 QIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFL--RGITLPGMSHGLSH 180
+ F LVL +V + KGI + M P + ++ L R +TLPG GL
Sbjct: 148 HLLF-LVLTALIVSRGVKKGIEKA-----NKIMMPLLFVLFIILVIRAVTLPGAMEGLKF 201
Query: 181 LFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
LF P + L +P VWL A Q FFSL L FG +I YSSY ++ A + N
Sbjct: 202 LFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLLNTLI 261
Query: 241 SMFAAIVIFA 250
S+ A +VIF
Sbjct: 262 SLLAGLVIFP 271
Score = 58.0 bits (141), Expect = 4e-09
Identities = 26/62 (41%), Positives = 32/62 (51%)
Query: 267 LKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVI 326
L +P VWL A Q FFSL L FG +I YSSY ++ A + N S A +VI
Sbjct: 210 LTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLVI 269
Query: 327 FA 328
F
Sbjct: 270 FP 271
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily,
Fusobacterium nucleatum Tyt1-like; solute-binding
domain. SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporter family
or Na+/Cl--dependent transporter family) include
neurotransmitter transporters (NTTs): these are sodium-
and chloride-dependent plasma membrane transporters for
the monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter. An arrangement of 12
transmembrane (TM) helices appears to be as a common
topological motif for eukaryotic and some prokaryotic
and archaeal NTTs. However, this subfamily which
contains the majority of bacterial members and some
archaeal members, appears to contain only 11 TMs; for
example the functional Fusobacterium nucleatum tyrosine
transporter Tyt1.
Length = 439
Score = 97.9 bits (245), Expect = 3e-22
Identities = 66/249 (26%), Positives = 99/249 (39%), Gaps = 37/249 (14%)
Query: 6 GIPIFYLELAIGQRLRKGAIGVWNH---VSPYLVGIGIASAVVSFNVALYYNTVIAWCLF 62
G+P+ E AIG+R RK +G + +G + +F + +Y+ V W L
Sbjct: 50 GLPLLIAEFAIGRRTRKNPVGAFAKLAKGGKKWKLVGWLGVLGAFLILSFYSVVGGWVLA 109
Query: 63 YFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFNW 122
Y +S + E SP P W
Sbjct: 110 YLFKSLTGSF---------------------AGADAAEVGAAFFGFIASPL--SPLL--W 144
Query: 123 QIAFALVLAWTVVYLCMMKGIASS--PFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSH 180
+ F L+ A V +G+ + + +++LI+ +R +TLPG GL
Sbjct: 145 HLLFLLLTALIV-----ARGVKKGIERASKILMPLL-FVLLIILAIRSLTLPGAGEGLKF 198
Query: 181 LFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
LF P + L P V L A Q FFSL L G +I Y SY P D N + A IV+ +
Sbjct: 199 LFKPDFSKLT-PEVVLAALGQAFFSLSLGMGVMITYGSYLPKDENLPKSALIVAILDTLV 257
Query: 241 SMFAAIVIF 249
++ A +VIF
Sbjct: 258 ALLAGLVIF 266
Score = 49.0 bits (118), Expect = 3e-06
Identities = 25/58 (43%), Positives = 31/58 (53%)
Query: 270 PHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIF 327
P V L A Q FFSL L G +I Y SY P D N + A IV+ + + A +VIF
Sbjct: 209 PEVVLAALGQAFFSLSLGMGVMITYGSYLPKDENLPKSALIVAILDTLVALLAGLVIF 266
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins;
solute binding domain. LeuT is a bacterial amino acid
transporter with specificity for the hydrophobic amino
acids glycine, alanine, methionine, and leucine. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family; LeuT has been used as a structural
template for understanding fundamental aspects of SLC6
function. It has an arrangement of 12 transmembrane
helices (TMs), which appears to be a common motif for
eukaryotic and some prokaryotic and archaeal SLC6s: an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12.
Length = 500
Score = 67.3 bits (165), Expect = 5e-12
Identities = 56/238 (23%), Positives = 86/238 (36%), Gaps = 62/238 (26%)
Query: 6 GIPIFYLELAIGQ---------------RLRKGAIGVWNHVSPYLVGIGIASAVVSFNVA 50
GIP+ ++E A+G+ ++ L IG A ++ V
Sbjct: 51 GIPLMWVEWAMGRYGGKHGHGTTPMIFLLAKRNIFAK------ILGAIGFAIPLL---VN 101
Query: 51 LYYNTVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDI 110
YY + +W L Y +S P P F+Y
Sbjct: 102 SYYVYIESWTLGYAFKSLTGGYPEP-------------------ILRPFAEFFYSYIGAK 142
Query: 111 SPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFL--RG 168
S + I AL ++Y + KGI + + P + + L R
Sbjct: 143 PSS---FAYIFFLITLALNFF--ILYRGVSKGIEAFAKI-----AMPLLYVFAIILAIRV 192
Query: 169 ITLPGMSH-------GLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSY 219
+TL + GL+ L+ P + LK+P VWL A QIFF+L L G +I Y+SY
Sbjct: 193 LTLGTPVNPDWTALKGLNFLWNPDFSKLKDPKVWLAAAGQIFFTLSLGMGIIINYASY 250
Score = 43.8 bits (104), Expect = 1e-04
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 264 WYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSY 297
+ LK+P VWL A QIFF+L L G +I Y+SY
Sbjct: 217 FSKLKDPKVWLAAAGQIFFTLSLGMGIIINYASY 250
>gnl|CDD|212874 cd11941, SH3_ARHGEF37_C2, Second C-terminal Src homology 3 domain
of Rho guanine nucleotide exchange factor 37. ARHGEF37
contains a RhoGEF [or Dbl homology (DH)] domain followed
by a Bin/Amphiphysin/Rvs (BAR) domain, and two
C-terminal SH3 domains. Its specific function is
unknown. Its domain architecture is similar to the
C-terminal half of DNMBP or Tuba, a cdc42-specific GEF
that provides a functional link between dynamin, Rho
GTPase signaling, and actin dynamics, and plays an
important role in regulating cell junction
configuration. GEFs activate small GTPases by exchanging
bound GDP for free GTP. SH3 domains are protein
interaction domains that bind to proline-rich ligands
with moderate affinity and selectivity, preferentially
to PxxP motifs. They play versatile and diverse roles in
the cell including the regulation of enzymes, changing
the subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies.
Length = 57
Score = 31.0 bits (70), Expect = 0.11
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 370 IFAIIGFKATNVYERCLQTRNAMLALDPHDSKNVPECSL 408
+ A F A + +E LQ + L+PHD K PE SL
Sbjct: 2 VVAAYPFTARSKHEVSLQAGQPVTVLEPHDKKGSPEWSL 40
>gnl|CDD|147812 pfam05858, BIV_Env, Bovine immunodeficiency virus surface protein
(SU). The bovine lentivirus also known as the bovine
immunodeficiency-like virus (BIV) has conserved and
hypervariable regions in the surface envelope gene. This
family corresponds to the SU surface protein.
Length = 548
Score = 32.4 bits (73), Expect = 0.57
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 9/138 (6%)
Query: 160 VLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAF-----GGLI 214
V I+ L +T+ G + + + K P + T I LGL G +I
Sbjct: 107 VFIIGILGTLTMAGTALADDDQSSVPENITKIPIKDTDPWTLIL--LGLVCILGLLGVII 164
Query: 215 AYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLGEVHWYMLKEPHVWL 274
A NP RDA V + II +S G + +++++ L
Sbjct: 165 AMRRSNPEGILAARDA--VDWWLSANKEIPLKFTVPIILISSPLAGIMGYFVMERYSKIL 222
Query: 275 EAGTQIFFSLGLAFGGLI 292
+ G Q SL L +G L+
Sbjct: 223 KGGCQFCGSLSLMWGMLL 240
>gnl|CDD|218782 pfam05859, Mis12, Mis12 protein. Kinetochores are the chromosomal
sites for spindle interaction and play a vital role in
chromosome segregation. Fission yeast kinetochore
protein Mis12, is required for correct spindle
morphogenesis, determining metaphase spindle length.
Thirty-five to sixty percent extension of metaphase
spindle length takes place in Mis12 mutants. It has been
shown that Mis12 genetically interacts with Mal2,
another inner centromere core complex protein in S.
pombe.
Length = 141
Score = 30.7 bits (70), Expect = 0.65
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 367 AIVIFAIIGFKATNVYERCLQTRNAMLALDPHDSKNVPEC--SLEKELENRFD 417
I +KAT E+ L R ++ + + + LE LE+R D
Sbjct: 17 VINAVNDYLYKATQAVEKVLLKRLPIMGAEIAPEEEIENGTAKLETLLESRVD 69
>gnl|CDD|240972 cd12528, RRM2_MEI2_fungi, RNA recognition motif 2 in fungal
Mei2-like proteins. This subgroup corresponds to the
RRM2 of fungal Mei2-like proteins.The Mei2 protein is an
essential component of the switch from mitotic to
meiotic growth in the fission yeast Schizosaccharomyces
pombe. It is an RNA-binding protein that contains three
RNA recognition motifs (RRMs), also termed RBDs (RNA
binding domains) or RNPs (ribonucleoprotein domains). In
the nucleus, S. pombe Mei2 stimulates meiosis upon
binding a specific non-coding RNA through its C-terminal
RRM motif. .
Length = 81
Score = 27.8 bits (62), Expect = 2.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 363 SMFAAIVIFAIIGFKATNVYERCLQ---TRNAMLALDPHDSKNVPECSLE 409
S F + F + + NV E + TR+A A+D + + V C LE
Sbjct: 30 STFGDLKAFKSLPSQQDNVKEFICEFFDTRDADNAVDELNGRVVDNCKLE 79
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like;
solute binding domain. This superfamily includes the
solute-binding domain of SLC5 proteins (also called the
sodium/glucose cotransporters or solute sodium
symporters), SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporters or
Na+/Cl--dependent transporters), and
nucleobase-cation-symport-1 (NCS1) transporters. SLC5s
co-transport Na+ with sugars, amino acids, inorganic
ions or vitamins. SLC6s include Na+/Cl--dependent plasma
membrane transporters for the monoamine
neurotransmitters serotonin, dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NCS1s are essential components of
salvage pathways for nucleobases and related
metabolites; their known substrates include allantoin,
uracil, thiamine, and nicotinamide riboside. Members of
this superfamily are important in human physiology and
disease. They contain a functional core of 10
transmembrane helices (TMs): an inverted structural
repeat, TMs1-5 and TMs6-10; TMs numbered to conform to
the SLC6 Aquifex aeolicus LeuT.
Length = 413
Score = 29.5 bits (66), Expect = 3.8
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 4/99 (4%)
Query: 158 YMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYS 217
V + G G+S + +L P + + G +L +G +
Sbjct: 154 MTVYMAVSFIG-GFAGVSKMVDAAPGHFEMILNLPGIAVAIGGLWVANL-YYWGFIQYII 211
Query: 218 SYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIETAS 256
D + M A ++ +I A+
Sbjct: 212 QRTLADKSVSEAQ--KGIVFAAFLMLIAPILVGLIGIAA 248
>gnl|CDD|240685 cd12239, RRM2_RBM40_like, RNA recognition motif 2 in RNA-binding
protein 40 (RBM40) and similar proteins. This subfamily
corresponds to the RRM2 of RBM40 and the RRM of RBM41.
RBM40, also known as RNA-binding region-containing
protein 3 (RNPC3) or U11/U12 small nuclear
ribonucleoprotein 65 kDa protein (U11/U12-65K protein).
It serves as a bridging factor between the U11 and U12
snRNPs. It contains two RNA recognition motifs (RRMs),
also known as RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains), connected by a linker that
includes a proline-rich region. It binds to the
U11-associated 59K protein via its RRM1 and employs the
RRM2 to bind hairpin III of the U12 small nuclear RNA
(snRNA). The proline-rich region might be involved in
protein-protein interactions. RBM41 contains only one
RRM. Its biological function remains unclear. .
Length = 82
Score = 27.5 bits (62), Expect = 4.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 245 AIVIFAIIETASLRLGEVHWYMLKE 269
A V F E A+ L V+ Y+LK
Sbjct: 50 AFVTFPSEEIATKALNLVNGYVLKG 74
>gnl|CDD|233281 TIGR01129, secD, protein-export membrane protein SecD. Members of
this family are highly variable in length immediately
after the well-conserved motif LGLGLXGG at the
amino-terminal end of this model. Archaeal homologs are
not included in the seed and score between the trusted
and noise cutoffs. SecD from Mycobacterium tuberculosis
has a long Pro-rich insert [Protein fate, Protein and
peptide secretion and trafficking].
Length = 397
Score = 29.2 bits (66), Expect = 4.8
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 124 IAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGM 174
I LVL + ++Y + IA+ V+ + + + L TLPG+
Sbjct: 256 IGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATL---TLPGI 303
>gnl|CDD|214338 CHL00025, ndhF, NADH dehydrogenase subunit 5.
Length = 741
Score = 29.1 bits (66), Expect = 6.1
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 153 TSMFPYMVLIVFFLR----GITLP--GMSHG-LSHLFTPKWYMLKEPHV----WLEAGTQ 201
T +FP +VL++F L GI G+ LS TP +L + W E T
Sbjct: 542 TMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHQNSNNSVDWYEFLTN 601
Query: 202 IFFSLGLAFGG-LIAYSSYNPV 222
FS+ +AF G IA Y PV
Sbjct: 602 AIFSVSIAFFGIFIASFLYGPV 623
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.140 0.452
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,943,928
Number of extensions: 2403103
Number of successful extensions: 3213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3144
Number of HSP's successfully gapped: 177
Length of query: 453
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 353
Effective length of database: 6,502,202
Effective search space: 2295277306
Effective search space used: 2295277306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (27.2 bits)