RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10392
(453 letters)
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 117 bits (296), Expect = 8e-29
Identities = 56/268 (20%), Positives = 100/268 (37%), Gaps = 30/268 (11%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVG------IGIASAVVSFNVALYYN 54
+ GIP+ ++E A+G+ G + L +G+ + VA+YY
Sbjct: 50 AFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYV 109
Query: 55 TVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSI 114
+ +W L + + +P + +P+ + E+ + +
Sbjct: 110 YIESWTLGFAIKFLVGLVP---------EPPPNATDPDSILRPFKEFLYSYIGVPKGDEP 160
Query: 115 DEPNGFNWQIAFALVLAWT--VVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFL--RGIT 170
I F + + ++ + KGI P + ++ FL R
Sbjct: 161 ILKPSLFAYIVFLITMFINVSILIRGISKGIERF-----AKIAMPTLFILAVFLVIRVFL 215
Query: 171 LP----GMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 226
L + GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D +
Sbjct: 216 LETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI 275
Query: 227 YRDAFIVSFTNCCTSMFAA--IVIFAII 252
+ N + I I A +
Sbjct: 276 VLSGLTAATLNEKAEVILGGSISIPAAV 303
Score = 57.8 bits (140), Expect = 3e-09
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 264 WYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAA 323
+ LK+P VW+ A QIFF+L L FG +I Y+SY D + + N
Sbjct: 235 FEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 294
Query: 324 --IVIFAII 330
I I A +
Sbjct: 295 GSISIPAAV 303
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.009
Identities = 36/215 (16%), Positives = 68/215 (31%), Gaps = 71/215 (33%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNT----V 56
ML+I + ++ + + N P A V ++L N V
Sbjct: 338 MLSISNLTQEQVQDYVNKT---------NSHLP-------AGKQVE--ISLV-NGAKNLV 378
Query: 57 IA---WCLFYFAQSFR----------AQLPWAECPTR--VFPNG---------SSLVEP- 91
++ L+ + R +++P++E R F N S L+ P
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---RKLKFSNRFLPVASPFHSHLLVPA 435
Query: 92 -ECLAS--TPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPF 148
+ + + + I P D +G + ++ + + I P
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQI-PVYDTFDGSDLRVLSGSISE----RIVDC--IIRLP- 487
Query: 149 VVY--VTSMFPYMVLIVFFLRGITLPGMSHGLSHL 181
V T+ F ++ F G PG + GL L
Sbjct: 488 -VKWETTTQFKATHILDF---G---PGGASGLGVL 515
Score = 30.4 bits (68), Expect = 1.5
Identities = 55/382 (14%), Positives = 91/382 (23%), Gaps = 140/382 (36%)
Query: 12 LELA------IGQRLRKGAIGVWNHV---------SPYLVGIGIASAVVSF--NVALYYN 54
EL + + +G ++ V + YL G I +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 55 TVIAWCLFYFAQSFRAQLPWAECP------------TRVFP--NG--------------- 85
Y A+ P+ + ++ G
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 86 ---SSLVEP----------ECLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAW 132
LV E + +T + L+I ++ P+
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS-----------NTP 226
Query: 133 TVVYLCMMKGIASSPF---VVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYML 189
YL S P ++ V + Y+V + G +
Sbjct: 227 DKDYL------LSIPISCPLIGVIQLAHYVV----TAK-------LLGFTP--------- 260
Query: 190 KEPHVWLEAGTQIFFSLGLAFGGLIAYS----SYNPVDNNCYRDAFIVSFTNCCTSMFAA 245
E +L+ T S GL IA + S+ F + C +
Sbjct: 261 GELRSYLKGATGH--SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV--RCYEAYPN 316
Query: 246 IVIFAIIETASLRLGE-VHWYMLK---------EPHV-----WLEAGTQIFFSLGLAFGG 290
+ I SL E V ML + +V L AG Q+ SL
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL------ 370
Query: 291 LIAYSSYNPVDNNCYRDAFIVS 312
N +VS
Sbjct: 371 ------VNG------AKNLVVS 380
Score = 30.0 bits (67), Expect = 2.3
Identities = 36/218 (16%), Positives = 59/218 (27%), Gaps = 94/218 (43%)
Query: 272 VWLEAGTQIFFSLGLA---------------FGGL----IA--YSSY---NPVDNNCYRD 307
VW A + G + FGG I YS+ VD +
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 308 AFIVSFTNCCTS-TFA--------------AIV-----IFAIIERTGLIAYSSYNPVDNN 347
TS TF A+ F ++ GLI P D
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI------PAD-- 1756
Query: 348 CYRDAFIVSFTNCCTSMFA--------AIVIFA-IIGFKATN--VYER------------ 384
+ FA A+ A ++ ++ V+ R
Sbjct: 1757 ---------------ATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 385 CLQTRNAMLALDPHDSKNVPECSLE--KELENRFDSQT 420
++ M+A++P + S E + + R +T
Sbjct: 1802 LGRSNYGMIAINP--GRVAASFSQEALQYVVERVGKRT 1837
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell
membrane, MEM protein transport, translocation,
transmembrane, transport; 3.30A {Thermus thermophilus}
PDB: 2rrn_A
Length = 741
Score = 28.6 bits (64), Expect = 4.9
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 10/55 (18%)
Query: 124 IAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGI----TLPGM 174
I + Y G+ +S + LI+ L G+ TLPG+
Sbjct: 280 IGTLAIFLLIFAYYGPHLGLVAS------LGLLYTSALILGLLSGLGATLTLPGI 328
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
{Geobacillus stearothermophilus} PDB: 3ayg_A*
Length = 800
Score = 28.5 bits (63), Expect = 5.7
Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 8/133 (6%)
Query: 94 LASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVV--YLCMMKGIASSPFVVY 151
E+F E G WQI + + + + + +G+
Sbjct: 413 NGYLGNEWFLLGHQ---GWEYIEL-GRIWQIILVVGMLLWLFIVFRGVKRGLKRESDKGG 468
Query: 152 VTSMFPYMVLIV--FFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLA 209
+ + Y + V F++ + ++ F W + E + L
Sbjct: 469 LIHLLFYSAIAVPFFYIFAFFIQPDTNFTMADFWRWWIIHLWVEGIFEVFAVVVIGFLLV 528
Query: 210 FGGLIAYSSYNPV 222
L+ S
Sbjct: 529 QLRLVTKKSTVRA 541
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.452
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,248,590
Number of extensions: 442313
Number of successful extensions: 929
Number of sequences better than 10.0: 1
Number of HSP's gapped: 921
Number of HSP's successfully gapped: 21
Length of query: 453
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 356
Effective length of database: 3,993,456
Effective search space: 1421670336
Effective search space used: 1421670336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.8 bits)