RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10392
(453 letters)
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Length = 509
Score = 129 bits (324), Expect = 3e-33
Identities = 68/398 (17%), Positives = 127/398 (31%), Gaps = 38/398 (9%)
Query: 1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHV------SPYLVGIGIASAVVSFNVALYYN 54
+ GIP+ ++E A+G+ G + + + +G+ + VA+YY
Sbjct: 46 AFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYV 105
Query: 55 TVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSI 114
+ +W L + + +P + L + Y I
Sbjct: 106 YIESWTLGFAIKFLVGLVPEPPPNATDPDS--------ILRPFKEFLYSYIGVPKGDEPI 157
Query: 115 DEPNGFNWQI-AFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPG 173
+P+ F + + + + +++ + KGI + T + L++ T G
Sbjct: 158 LKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNG 217
Query: 174 -MSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFI 232
+ GL+ L+TP + LK+P VW+ A QIFF+L L FG +I Y+SY D +
Sbjct: 218 TAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLT 277
Query: 233 VSFTNCCTSMFAAIVIFAIIETASLRLGEVH-------------WYMLKEPHVWLEAGTQ 279
+ N + I A +
Sbjct: 278 AATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLG 337
Query: 280 IFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYS 339
+ L F GL + + D +S + T A + A + +
Sbjct: 338 FLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLD 397
Query: 340 SYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFK 377
D + + + I+ F I G
Sbjct: 398 EM---------DFWAGTIGVVFFGLTELIIFFWIFGAD 426
>d1g91a_ d.9.1.1 (A:) Myeloid progenitor inhibitory factor-1
(MPIF-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 26.3 bits (58), Expect = 2.3
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 307 DAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIV 355
D F + +CC S + +++E SY ++ C + I
Sbjct: 2 DRFHATSADCCISYTPRSIPCSLLE--------SYFETNSECSKPGVIF 42
>d1el0a_ d.9.1.1 (A:) CC chemokine I-309 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 74
Score = 25.5 bits (56), Expect = 3.8
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 8/49 (16%)
Query: 307 DAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIV 355
+ V F+ CC S + I Y + C + I
Sbjct: 2 KSMQVPFSRCCFSFAEQEIPLRAIL--------CYRNTSSICSNEGLIF 42
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 427
Score = 26.9 bits (58), Expect = 5.9
Identities = 11/114 (9%), Positives = 28/114 (24%)
Query: 303 NCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 362
+ ++ AA + ++ TG+ S + + +
Sbjct: 233 SPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDD 292
Query: 363 SMFAAIVIFAIIGFKATNVYERCLQTRNAMLALDPHDSKNVPECSLEKELENRF 416
+ I ++ + + A L + KE + F
Sbjct: 293 YISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLF 346
>d3ejva1 d.17.4.28 (A:2-160) Uncharacterized protein Saro2766
{Novosphingobium aromaticivorans [TaxId: 48935]}
Length = 159
Score = 26.0 bits (56), Expect = 7.5
Identities = 9/64 (14%), Positives = 18/64 (28%)
Query: 226 CYRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLGEVHWYMLKEPHVWLEAGTQIFFSLG 285
F + + A + G+ + W+ + +I L
Sbjct: 96 AQFMVFSILAAEVPDGGWPTGTFGAQGRIVPIEAGQYRLTLRTVADGWVISAMRIEHRLP 155
Query: 286 LAFG 289
+AFG
Sbjct: 156 MAFG 159
>d1p4ea2 d.163.1.1 (A:136-422) Flp recombinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 26.4 bits (58), Expect = 7.6
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 326 IFAIIERT-GLIAYSSYNPVDNNCYRDAFIVSFTNCC 361
I+ I E+ Y+S Y+ F+ +F NC
Sbjct: 19 IWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCG 55
>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate
synthase (GLMS) {Escherichia coli [TaxId: 562]}
Length = 366
Score = 26.3 bits (57), Expect = 9.6
Identities = 27/227 (11%), Positives = 58/227 (25%), Gaps = 30/227 (13%)
Query: 185 KWYMLKE----PHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
+ YM KE P+ T G G + S P + + C T
Sbjct: 7 RHYMQKEIYEQPNAIKNTLT------GRISHGQVDLSELGPNADELLSKVEHIQILACGT 60
Query: 241 SMFAAIVIFAIIETASLRLGEVHWY-MLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNP 299
S + +V E+ + +V + + + + + G A +
Sbjct: 61 SYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITL---SQSGETADTLAGL 117
Query: 300 VDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTN 359
+ ++ N S+ A++ G V+ T
Sbjct: 118 RLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIG----------------VASTK 161
Query: 360 CCTSMFAAIVIFAIIGFKATNVYERCLQTRNAMLALDPHDSKNVPEC 406
T+ +++ + + L P + +
Sbjct: 162 AFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQ 208
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.140 0.452
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,794,588
Number of extensions: 86471
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 18
Length of query: 453
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,199,356
Effective search space: 437764940
Effective search space used: 437764940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.2 bits)