BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10393
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo
sapiens GN=AGPS PE=1 SV=1
Length = 658
Score = 122 bits (305), Expect = 8e-28, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 67/85 (78%)
Query: 3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
LL GD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 527
Query: 63 FETSVPWDKTVLLCINVKKRLTREC 87
FETS PWD+ V LC NVK+R+TREC
Sbjct: 528 FETSAPWDRVVDLCRNVKERITREC 552
>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus
musculus GN=Agps PE=1 SV=1
Length = 645
Score = 119 bits (299), Expect = 4e-27, Method: Composition-based stats.
Identities = 51/88 (57%), Positives = 66/88 (75%)
Query: 3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
LL GD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD +YY IG+S
Sbjct: 455 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGES 514
Query: 63 FETSVPWDKTVLLCINVKKRLTRECTGR 90
FETS PWD+ + LC NVK+R+ REC R
Sbjct: 515 FETSAPWDRVIDLCRNVKERIRRECKER 542
>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia
porcellus GN=AGPS PE=1 SV=1
Length = 658
Score = 119 bits (297), Expect = 7e-27, Method: Composition-based stats.
Identities = 54/100 (54%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Query: 3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
LL GD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63 FETSVPWDKTVLLCINVKKRLTREC--TGRWLPVLLSIKV 100
FETS PWD+ V LC NVK+R+ REC G P L + +V
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRV 567
>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus
norvegicus GN=Agps PE=2 SV=1
Length = 644
Score = 118 bits (295), Expect = 1e-26, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 66/88 (75%)
Query: 3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
LL GD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY +G+S
Sbjct: 454 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGES 513
Query: 63 FETSVPWDKTVLLCINVKKRLTRECTGR 90
FETS PWD+ + LC NVK+R+ REC R
Sbjct: 514 FETSAPWDRVIDLCRNVKERIRRECKER 541
>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster
GN=CG10253 PE=2 SV=1
Length = 631
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/88 (53%), Positives = 62/88 (70%)
Query: 3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
LL GD +DV+ E IY IA+++ G PAG NG RGY+LT++IAYIRDF + +S
Sbjct: 420 LLFEGDLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAES 479
Query: 63 FETSVPWDKTVLLCINVKKRLTRECTGR 90
FETSVPWD+ LLC +VK+R+ EC+ R
Sbjct: 480 FETSVPWDRCSLLCRSVKQRVVSECSKR 507
>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans
GN=ads-1 PE=2 SV=1
Length = 597
Score = 88.2 bits (217), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
Query: 7 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 66
G+ E+V +E+++ +A+++ G+ G NG+ GY LT+ IAY+RD ++ +G+SFETS
Sbjct: 401 GNREEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFETS 460
Query: 67 VPWDKTVLLCINVKKRLTRECTGRWL--PVLLSIKV 100
VPWDK + LC NVK+ + RE + + PVL + +V
Sbjct: 461 VPWDKVLSLCRNVKELMKREAKAQGVTHPVLANCRV 496
>sp|O97157|ADAS_TRYBB Alkyldihydroxyacetonephosphate synthase OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 613
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 18 KIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCI 77
++ + + +G G G Y + Y+RDFA + F D FETSV + +
Sbjct: 405 ELVGVFQAFGATCLGTKPGNTWQEKKYDLPYLRDFALAHNFWADVFETSVLYTDAIHCWR 464
Query: 78 NVKK 81
VKK
Sbjct: 465 AVKK 468
>sp|Q13E22|MNME_RHOPS tRNA modification GTPase MnmE OS=Rhodopseudomonas palustris (strain
BisB5) GN=mnmE PE=3 SV=2
Length = 460
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 26 YGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74
+GG A E + RG L +IA I DFA Y+ G++ S +T+L
Sbjct: 357 WGGNAAFEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLL 405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,284,544
Number of Sequences: 539616
Number of extensions: 1701332
Number of successful extensions: 3084
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3075
Number of HSP's gapped (non-prelim): 10
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)