Query psy10393
Match_columns 113
No_of_seqs 107 out of 270
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 16:43:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1233|consensus 99.9 3.7E-22 8E-27 165.0 5.9 104 1-104 421-526 (613)
2 PF02913 FAD-oxidase_C: FAD li 99.0 4.1E-10 8.9E-15 83.3 3.2 97 1-104 62-165 (248)
3 TIGR00387 glcD glycolate oxida 98.4 5.9E-07 1.3E-11 73.9 6.7 95 1-103 234-333 (413)
4 PRK11230 glycolate oxidase sub 97.9 4.2E-05 9.1E-10 64.9 7.3 91 2-100 292-387 (499)
5 PLN02805 D-lactate dehydrogena 97.8 9.6E-05 2.1E-09 63.7 7.4 93 1-103 366-464 (555)
6 COG3286 Uncharacterized protei 91.8 0.68 1.5E-05 35.6 6.2 84 3-86 41-135 (204)
7 PF09840 DUF2067: Uncharacteri 75.9 15 0.00033 27.8 6.8 84 3-86 38-132 (190)
8 cd00248 Mth938-like Mth938-lik 49.4 8.3 0.00018 26.3 0.9 28 39-66 61-88 (109)
9 COG3010 NanE Putative N-acetyl 46.7 33 0.00072 26.9 3.9 72 3-85 156-228 (229)
10 cd07947 DRE_TIM_Re_CS Clostrid 45.6 95 0.0021 24.6 6.5 61 9-70 110-180 (279)
11 KOG4179|consensus 44.3 9 0.00019 33.1 0.5 19 52-71 511-529 (568)
12 COG1071 AcoA Pyruvate/2-oxoglu 38.7 68 0.0015 26.8 4.8 72 6-86 229-322 (358)
13 COG2240 PdxK Pyridoxal/pyridox 37.5 1.3E+02 0.0028 24.4 6.0 25 2-26 78-102 (281)
14 COG4519 Uncharacterized protei 35.0 44 0.00096 22.6 2.6 51 58-112 15-72 (95)
15 cd05560 Xcc1710_like Xcc1710_l 34.7 20 0.00044 24.4 1.0 28 39-66 61-88 (109)
16 COG5405 HslV ATP-dependent pro 32.5 45 0.00098 25.2 2.6 55 2-61 47-103 (178)
17 TIGR02660 nifV_homocitr homoci 29.3 1.3E+02 0.0027 24.6 4.9 67 10-82 109-183 (365)
18 PF03537 Glyco_hydro_114: Glyc 28.6 63 0.0014 20.4 2.5 25 87-113 45-69 (74)
19 cd01816 Raf_RBD Ubiquitin doma 28.6 41 0.0009 22.0 1.6 33 79-112 22-57 (74)
20 PRK10966 exonuclease subunit S 28.0 1E+02 0.0022 25.7 4.2 96 4-101 79-192 (407)
21 KOG2872|consensus 27.1 1.8E+02 0.0038 24.3 5.3 62 17-108 207-268 (359)
22 KOG0496|consensus 26.9 74 0.0016 28.7 3.3 61 12-72 144-209 (649)
23 PF14257 DUF4349: Domain of un 26.5 89 0.0019 24.0 3.4 76 10-85 59-143 (262)
24 cd07045 BMC_CcmK_like Carbon d 25.9 1.1E+02 0.0025 19.8 3.4 28 2-29 40-67 (84)
25 PRK11858 aksA trans-homoaconit 25.4 1.7E+02 0.0037 24.0 5.1 68 10-82 112-186 (378)
26 PF02450 LCAT: Lecithin:choles 24.9 1.7E+02 0.0036 24.0 4.9 51 49-99 70-126 (389)
27 cd05125 Mth938_2P1-like Mth938 24.7 39 0.00086 23.4 1.0 34 29-67 58-91 (114)
28 PRK05184 pyrroloquinoline quin 24.5 76 0.0017 25.1 2.8 17 87-103 256-272 (302)
29 COG4047 Uncharacterized protei 24.0 1.7E+02 0.0036 23.2 4.4 89 9-98 19-148 (243)
30 PLN02269 Pyruvate dehydrogenas 23.9 2.9E+02 0.0062 22.8 6.1 73 6-87 228-322 (362)
31 cd00886 MogA_MoaB MogA_MoaB fa 23.8 1.4E+02 0.003 21.0 3.8 38 45-84 21-58 (152)
32 PF04182 B-block_TFIIIC: B-blo 23.5 83 0.0018 19.7 2.3 46 16-62 5-51 (75)
33 PF14791 DNA_pol_B_thumb: DNA 23.4 18 0.00039 22.6 -0.8 26 2-32 2-27 (64)
34 PF01218 Coprogen_oxidas: Copr 23.1 89 0.0019 25.5 2.9 77 8-87 133-209 (296)
35 PF02662 FlpD: Methyl-viologen 22.6 1.1E+02 0.0025 21.2 3.1 49 35-85 70-122 (124)
36 TIGR02884 spore_pdaA delta-lac 22.4 2.2E+02 0.0047 21.4 4.8 88 9-108 107-203 (224)
37 PLN02321 2-isopropylmalate syn 22.4 2.6E+02 0.0055 25.1 5.8 67 9-81 205-280 (632)
38 TIGR03356 BGL beta-galactosida 22.4 1.2E+02 0.0026 25.4 3.6 55 48-102 56-119 (427)
39 TIGR00177 molyb_syn molybdenum 21.8 1.7E+02 0.0037 20.4 3.9 38 45-84 28-65 (144)
40 PF00994 MoCF_biosynth: Probab 21.5 1.3E+02 0.0029 20.7 3.3 39 45-85 18-56 (144)
41 TIGR03006 pepcterm_polyde poly 21.5 1.3E+02 0.0028 23.6 3.5 29 37-65 17-49 (265)
42 COG3076 Uncharacterized protei 21.4 1.2E+02 0.0026 21.7 3.0 25 9-33 84-108 (135)
43 cd05126 Mth938 Mth938 domain. 21.2 44 0.00095 23.2 0.7 69 15-100 47-117 (117)
44 PF08410 DUF1737: Domain of un 20.2 1.2E+02 0.0025 18.6 2.4 25 73-97 15-39 (54)
No 1
>KOG1233|consensus
Probab=99.86 E-value=3.7e-22 Score=164.96 Aligned_cols=104 Identities=46% Similarity=0.856 Sum_probs=98.0
Q ss_pred CEEEEecChHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHHHHHHH
Q psy10393 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 80 (113)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~ 80 (113)
+|+.|||+.++|+++++++++|+.+++|+..|..+|+..|..+|.++|+||+-+.+|++.|+|||++|||++..||++|+
T Consensus 421 ATllfEGdre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVK 500 (613)
T KOG1233|consen 421 ATLLFEGDREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVK 500 (613)
T ss_pred hhheecccHHHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCC--eeEEEEeecch
Q psy10393 81 KRLTRECTGRWLP--VLLSIKVRWMQ 104 (113)
Q Consensus 81 ~al~~a~~~~g~~--~~v~ch~SH~~ 104 (113)
+++.++++++|+. ++-.||++...
T Consensus 501 er~~rEck~~gv~~~~~s~CRVTQtY 526 (613)
T KOG1233|consen 501 ERMKRECKAQGVTHPVLSNCRVTQTY 526 (613)
T ss_pred HHHHHHHHhcCCCcccccceeEEEEe
Confidence 9999999999986 33559998653
No 2
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=98.96 E-value=4.1e-10 Score=83.33 Aligned_cols=97 Identities=22% Similarity=0.216 Sum_probs=76.7
Q ss_pred CEEEEecChH-HhHhHHH-HHHHHHHHcCCcc-----CCCcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchH
Q psy10393 1 MALLVLGDPE-DVKNNED-KIYSIAKRYGGIP-----AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTV 73 (113)
Q Consensus 1 ~~~gfEG~~~-~V~~~~~-~~~~i~~~~GG~~-----~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~ 73 (113)
+++.|+|+++ .++.+.+ .+.++++++|+.. -.+...+-|...++..||+++.....|...+|+|+++||++++
T Consensus 62 llv~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~ 141 (248)
T PF02913_consen 62 LLVEFEGSDEEAVEEQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLP 141 (248)
T ss_dssp EEEECCCHHHCCHHHHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhh
Confidence 4688999994 4666666 7888888888764 1223457788877777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEeecch
Q psy10393 74 LLCINVKKRLTRECTGRWLPVLLSIKVRWMQ 104 (113)
Q Consensus 74 ~l~~~V~~al~~a~~~~g~~~~v~ch~SH~~ 104 (113)
++++.+++.+.+.. +..||++|..
T Consensus 142 ~~~~~~~~~~~~~~-------~~~~~~gH~~ 165 (248)
T PF02913_consen 142 EFLREIRALLREYG-------LEVCHFGHAG 165 (248)
T ss_dssp HHHHHHHHHHHHCT-------EEEEEEEEEE
T ss_pred hHHHhhhhhhhhcc-------ccccceEEcc
Confidence 99999977777543 6777777764
No 3
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=98.43 E-value=5.9e-07 Score=73.85 Aligned_cols=95 Identities=14% Similarity=0.051 Sum_probs=70.9
Q ss_pred CEEEEecChHHhHhHHHHHHHHHHHcCCccC----C-CcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHH
Q psy10393 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL 75 (113)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~----G-~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l 75 (113)
+++.|+|+.++++.+.+++.++++++|+... + +...+.|...++..|++++.. ...+ +.|+++||++++++
T Consensus 234 l~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l~~~ 309 (413)
T TIGR00387 234 LLVEIDGVHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKLPEA 309 (413)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHHHHH
Confidence 3578999999999999999999999988532 1 245667888788889988742 2222 46799999999999
Q ss_pred HHHHHHHHHHHHhccCCCeeEEEEeecc
Q psy10393 76 CINVKKRLTRECTGRWLPVLLSIKVRWM 103 (113)
Q Consensus 76 ~~~V~~al~~a~~~~g~~~~v~ch~SH~ 103 (113)
++.+++.++ +.+.+..++.|++|-
T Consensus 310 ~~~~~~~~~----~~~~~~~~~gH~g~g 333 (413)
T TIGR00387 310 LRGIADIAR----KYDFTIANFGHAGDG 333 (413)
T ss_pred HHHHHHHHH----HcCCeEEEEEEecCC
Confidence 999876654 446666667777653
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=97.89 E-value=4.2e-05 Score=64.85 Aligned_cols=91 Identities=10% Similarity=0.022 Sum_probs=63.7
Q ss_pred EEEEecChHHhHhHHHHHHHHHHHcCCccCC-----CcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHHH
Q psy10393 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG-----ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLC 76 (113)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G-----~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~ 76 (113)
++.|+|+++.++.+.+++.++++++|+..+. ++..+.|..-+...|+++.. ..+++. .++++||+++++++
T Consensus 292 l~e~~g~~~~v~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~~--~dv~vP~~~l~~~~ 367 (499)
T PRK11230 292 LCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYYC--MDGTIPRRELPGVL 367 (499)
T ss_pred EEEecCCchHHHHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCeeE--EeecCChHHHHHHH
Confidence 5788999999999999999999999975332 12335676633456887762 334443 49999999999999
Q ss_pred HHHHHHHHHHHhccCCCeeEEEEe
Q psy10393 77 INVKKRLTRECTGRWLPVLLSIKV 100 (113)
Q Consensus 77 ~~V~~al~~a~~~~g~~~~v~ch~ 100 (113)
+.+++.. ++.+.+..++-|+
T Consensus 368 ~~~~~~~----~~~~~~~~~~gH~ 387 (499)
T PRK11230 368 EGIARLS----QQYGLRVANVFHA 387 (499)
T ss_pred HHHHHHH----HHcCCeEEEEEEe
Confidence 9997744 3445444444443
No 5
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=97.76 E-value=9.6e-05 Score=63.66 Aligned_cols=93 Identities=13% Similarity=0.031 Sum_probs=62.1
Q ss_pred CEEEEecChHHhHhHHHHHHHHHHHcCCc--cCCCc---chhhhhhhhhhh-hhhhhhhhhccCceeeeecccccCchHH
Q psy10393 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI--PAGES---NGRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWDKTVL 74 (113)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~--~~G~~---~g~~W~~~Rf~~-pYLRd~l~~~G~~~DT~ETA~~Ws~v~~ 74 (113)
+++.|+|++++++.+.+.+.+|++++|+. .+... ..+.|.. |-.. |.+.. ...+....+.++++||+++++
T Consensus 366 Ll~e~~g~~~~~~~~~~~~~~i~~~~g~~~~~~a~~~~e~~~lW~~-R~~~~~~~~~--~~~~~~~~~~DvaVP~s~L~e 442 (555)
T PLN02805 366 LMFEFIGTEAYAREQTLIVQKIASKHNGSDFVFAEEPEAKKELWKI-RKEALWACFA--MEPKYEAMITDVCVPLSHLAE 442 (555)
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHH-HHHHHHHHhh--cCCCCceeEEEEEEEHHHHHH
Confidence 36788999999999999999999999984 22222 2445663 4333 22221 123444557899999999999
Q ss_pred HHHHHHHHHHHHHhccCCCeeEEEEeecc
Q psy10393 75 LCINVKKRLTRECTGRWLPVLLSIKVRWM 103 (113)
Q Consensus 75 l~~~V~~al~~a~~~~g~~~~v~ch~SH~ 103 (113)
+++.+++.+. +.+.. +++++|+
T Consensus 443 ~i~~~~~~~~----~~~~~---~~~~gHa 464 (555)
T PLN02805 443 LISRSKKELD----ASPLV---CTVIAHA 464 (555)
T ss_pred HHHHHHHHHH----HcCCe---EEEEEEc
Confidence 9999976654 44544 4555554
No 6
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.83 E-value=0.68 Score=35.64 Aligned_cols=84 Identities=13% Similarity=0.155 Sum_probs=60.0
Q ss_pred EEEecChHHhHhHHHHHHHHHHHcCCccCCCcchh-----hhhhhhhhhh--hhhhhhhhccCcee----eeecccccCc
Q psy10393 3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGR-----RGYMLTYIIA--YIRDFACDYYFIGD----SFETSVPWDK 71 (113)
Q Consensus 3 ~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~-----~W~~~Rf~~p--YLRd~l~~~G~~~D----T~ETA~~Ws~ 71 (113)
+-..|.++.++...+.++++.++.-+..-+...|. --...+=+.| -|+|.|--+|+=++ -++|++||+.
T Consensus 41 V~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~~e 120 (204)
T COG3286 41 VNVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPWSE 120 (204)
T ss_pred EEEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCHHH
Confidence 34578899999999999998887766543332111 1112222232 59999999998764 5899999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy10393 72 TVLLCINVKKRLTRE 86 (113)
Q Consensus 72 v~~l~~~V~~al~~a 86 (113)
+..+.+++-+..+.+
T Consensus 121 v~E~vreLse~~~E~ 135 (204)
T COG3286 121 VVELVRELSEVYREA 135 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887766
No 7
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=75.89 E-value=15 Score=27.76 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=58.4
Q ss_pred EEEecChHHhHhHHHHHHHHHHHcCCccCCCcchh---hhh--h--hhhhhhhhhhhhhhccCce----eeeecccccCc
Q psy10393 3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGR---RGY--M--LTYIIAYIRDFACDYYFIG----DSFETSVPWDK 71 (113)
Q Consensus 3 ~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~---~W~--~--~Rf~~pYLRd~l~~~G~~~----DT~ETA~~Ws~ 71 (113)
+=..|++.+++...+.++++.+...+..-+.+..+ ... + ..|..|-|-|.|--.|+=+ |.+.|++||+.
T Consensus 38 I~i~G~~~eike~~~~Ik~~~~~vr~k~~~~g~~~y~l~~i~r~a~~~vp~d~L~~~L~~~G~~ae~~~~~i~T~a~~ee 117 (190)
T PF09840_consen 38 IEIQGYEKEIKEAIRRIKELVRRVRSKYNKRGLYRYSLDDIFREAGYPVPPDLLVDALKLLGYKAEYREDVIKTDAPLEE 117 (190)
T ss_pred EEEecChHHHHHHHHHHHHHHHHHHHHhccCCceEEcHHHHHHHcCCCCCHHHHHHHHHhCCCeeEEeCCeEEecCCHHH
Confidence 34568888888888888888776555322221110 111 1 3445557999998888765 58999999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy10393 72 TVLLCINVKKRLTRE 86 (113)
Q Consensus 72 v~~l~~~V~~al~~a 86 (113)
+.++-+++.++....
T Consensus 118 v~~l~~~Lse~~~e~ 132 (190)
T PF09840_consen 118 VVELAERLSEIYKEL 132 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877743
No 8
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=49.35 E-value=8.3 Score=26.30 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=24.1
Q ss_pred hhhhhhhhhhhhhhhhhccCceeeeecc
Q psy10393 39 GYMLTYIIAYIRDFACDYYFIGDSFETS 66 (113)
Q Consensus 39 W~~~Rf~~pYLRd~l~~~G~~~DT~ETA 66 (113)
+...+|--|-+++.|.++|+-+|.+.|.
T Consensus 61 G~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 61 GAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 3445687889999999999999999997
No 9
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=46.70 E-value=33 Score=26.95 Aligned_cols=72 Identities=7% Similarity=-0.066 Sum_probs=53.7
Q ss_pred EEEec-ChHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHHHHHHHH
Q psy10393 3 LLVLG-DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 81 (113)
Q Consensus 3 ~gfEG-~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~ 81 (113)
-||++ +..+.+.-..-++++++ .|-..+.+ +||+.|-+-...++.|..+=|.=+|.| |...+.....+
T Consensus 156 sGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAE--------Gr~~tP~~Ak~a~~~Ga~aVvVGsAIT--Rp~~It~~F~~ 224 (229)
T COG3010 156 SGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAE--------GRYNTPEQAKKAIEIGADAVVVGSAIT--RPEEITQWFVD 224 (229)
T ss_pred ccccCCCCCCCCCcHHHHHHHHh-CCCeEEee--------CCCCCHHHHHHHHHhCCeEEEECcccC--CHHHHHHHHHH
Confidence 47777 55666777777777775 56655554 699999988889999999999999988 66666666665
Q ss_pred HHHH
Q psy10393 82 RLTR 85 (113)
Q Consensus 82 al~~ 85 (113)
++++
T Consensus 225 ~ik~ 228 (229)
T COG3010 225 AIKS 228 (229)
T ss_pred HHhc
Confidence 5543
No 10
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=45.56 E-value=95 Score=24.57 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=33.7
Q ss_pred hHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhh--hhhhhhhhhhhh---hccC-----ceeeeecccccC
Q psy10393 9 PEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYML--TYIIAYIRDFAC---DYYF-----IGDSFETSVPWD 70 (113)
Q Consensus 9 ~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~--Rf~~pYLRd~l~---~~G~-----~~DT~ETA~~Ws 70 (113)
.+++-...+.+.+.++++|-. +--.+...++.. -+-.+|+.+.+- +.|. ++||...++|++
T Consensus 110 ~~e~l~~~~~~v~~a~~~g~~-v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~ 180 (279)
T cd07947 110 REEAMEKYLEIVEEALDHGIK-PRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYP 180 (279)
T ss_pred HHHHHHHHHHHHHHHHHCCCe-EEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccc
Confidence 344555566677778887643 211222223321 122356666433 2554 469999999995
No 11
>KOG4179|consensus
Probab=44.31 E-value=9 Score=33.12 Aligned_cols=19 Identities=37% Similarity=0.760 Sum_probs=16.0
Q ss_pred hhhhccCceeeeecccccCc
Q psy10393 52 FACDYYFIGDSFETSVPWDK 71 (113)
Q Consensus 52 ~l~~~G~~~DT~ETA~~Ws~ 71 (113)
.--+.|++.|| ||+..||+
T Consensus 511 ytg~~gylsdt-ets~~w~~ 529 (568)
T KOG4179|consen 511 YTGDSGYLSDT-ETSQQWDN 529 (568)
T ss_pred ecCCCccccCc-cccccccc
Confidence 34578999998 99999995
No 12
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=38.73 E-value=68 Score=26.76 Aligned_cols=72 Identities=10% Similarity=0.056 Sum_probs=47.6
Q ss_pred ecCh-HHhHhHHHHHHHHHHHcCCccC-------------C--------CcchhhhhhhhhhhhhhhhhhhhccCceeee
Q psy10393 6 LGDP-EDVKNNEDKIYSIAKRYGGIPA-------------G--------ESNGRRGYMLTYIIAYIRDFACDYYFIGDSF 63 (113)
Q Consensus 6 EG~~-~~V~~~~~~~~~i~~~~GG~~~-------------G--------~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ 63 (113)
.|.+ -.|-...+.+.+.+++.+|=.+ + ++-.+.|.+ |=-++-||++|.+.|++.|
T Consensus 229 DG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~-~DPi~r~~~~L~~~g~~se-- 305 (358)
T COG1071 229 DGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGILSE-- 305 (358)
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhc-cChHHHHHHHHHHcCCCCH--
Confidence 3444 4477788889999998888221 1 122345554 2223469999999999887
Q ss_pred ecccccCchHHHHHHHHHHHHHH
Q psy10393 64 ETSVPWDKTVLLCINVKKRLTRE 86 (113)
Q Consensus 64 ETA~~Ws~v~~l~~~V~~al~~a 86 (113)
..+.++.+++++.+.++
T Consensus 306 ------e~~~~i~~e~~~~V~ea 322 (358)
T COG1071 306 ------EELEAIEAEAKAEVDEA 322 (358)
T ss_pred ------HHHHHHHHHHHHHHHHH
Confidence 46677777777777764
No 13
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=37.53 E-value=1.3e+02 Score=24.37 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=22.4
Q ss_pred EEEEecChHHhHhHHHHHHHHHHHc
Q psy10393 2 ALLVLGDPEDVKNNEDKIYSIAKRY 26 (113)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~ 26 (113)
+-||=|+.++|+...+.+.++.+++
T Consensus 78 ltGYlgs~~qv~~i~~~v~~vk~~~ 102 (281)
T COG2240 78 LTGYLGSAEQVRAIAGIVKAVKEAN 102 (281)
T ss_pred EEccCCCHHHHHHHHHHHHHHhccC
Confidence 5699999999999999999998874
No 14
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.02 E-value=44 Score=22.56 Aligned_cols=51 Identities=20% Similarity=0.104 Sum_probs=31.9
Q ss_pred CceeeeecccccCchHHHHHHH---HHHHHHHHhccCCCeeEEE----Eeecchhhhhhccc
Q psy10393 58 FIGDSFETSVPWDKTVLLCINV---KKRLTRECTGRWLPVLLSI----KVRWMQAEYLRSDW 112 (113)
Q Consensus 58 ~~~DT~ETA~~Ws~v~~l~~~V---~~al~~a~~~~g~~~~v~c----h~SH~~~~~~~~~~ 112 (113)
+++|+.||+ |||+|+++. +..+++.+++--.=++++. -..|-|.-|.-+||
T Consensus 15 ~Li~S~e~~----nVP~lm~~TGwPRRT~QDvikAlpglgi~l~FvQ~G~Rnn~GyYql~dW 72 (95)
T COG4519 15 YLIDSGETA----NVPELMAATGWPRRTAQDVIKALPGLGIVLEFVQEGARNNQGYYQLRDW 72 (95)
T ss_pred HHHhccccC----ChHHHHHHcCCchhHHHHHHHhCcCCCeEEEeeecccccCCCceEeeec
Confidence 367888885 788888775 5556666555322233332 34566777877887
No 15
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=34.66 E-value=20 Score=24.42 Aligned_cols=28 Identities=7% Similarity=-0.140 Sum_probs=24.4
Q ss_pred hhhhhhhhhhhhhhhhhccCceeeeecc
Q psy10393 39 GYMLTYIIAYIRDFACDYYFIGDSFETS 66 (113)
Q Consensus 39 W~~~Rf~~pYLRd~l~~~G~~~DT~ETA 66 (113)
+...+|--|-+++.|.++|+-+|.+.|+
T Consensus 61 G~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 61 GERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 4556777789999999999999999997
No 16
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.49 E-value=45 Score=25.22 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=39.8
Q ss_pred EEEEecChHHhHhHHHHHHHHHHHcCCccCCC--cchhhhhhhhhhhhhhhhhhhhccCcee
Q psy10393 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGE--SNGRRGYMLTYIIAYIRDFACDYYFIGD 61 (113)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~--~~g~~W~~~Rf~~pYLRd~l~~~G~~~D 61 (113)
+.||-|+..+.-...+...+-++.+.|-..-. +..+.|+.-| |||. |-.+=+++|
T Consensus 47 laGFAGstADaftLfe~fe~kle~~~g~L~raavelaKdwr~Dk----~lr~-LEAmllVad 103 (178)
T COG5405 47 LAGFAGSTADAFTLFERFEAKLEQYQGDLFRAAVELAKDWRTDK----YLRK-LEAMLLVAD 103 (178)
T ss_pred EEEecccchhHHHHHHHHHHHHHHccCcHHHHHHHHHHhhhhhh----HHHH-HhhheeEeC
Confidence 67999999998888999999999998744322 5678898655 4776 444434433
No 17
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=29.30 E-value=1.3e+02 Score=24.57 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=37.3
Q ss_pred HHhHhHHHHHHHHHHHcCCcc-CCCcchhhhhhhhhhhhhhhhh---hhhcc----CceeeeecccccCchHHHHHHHHH
Q psy10393 10 EDVKNNEDKIYSIAKRYGGIP-AGESNGRRGYMLTYIIAYIRDF---ACDYY----FIGDSFETSVPWDKTVLLCINVKK 81 (113)
Q Consensus 10 ~~V~~~~~~~~~i~~~~GG~~-~G~~~g~~W~~~Rf~~pYLRd~---l~~~G----~~~DT~ETA~~Ws~v~~l~~~V~~ 81 (113)
+++-.....+.+.++++|-.. .+-. ...|.+..|+.+. +.++| .++||...++|+ .+..+.+.+++
T Consensus 109 ~e~l~~~~~~i~~ak~~g~~v~~~~e-----d~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~-~v~~lv~~l~~ 182 (365)
T TIGR02660 109 AWVLERLARLVSFARDRGLFVSVGGE-----DASRADPDFLVELAEVAAEAGADRFRFADTVGILDPF-STYELVRALRQ 182 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeec-----CCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHH-HHHHHHHHHHH
Confidence 333344455667888887532 2222 1223333443332 45566 467999999994 56666666654
Q ss_pred H
Q psy10393 82 R 82 (113)
Q Consensus 82 a 82 (113)
.
T Consensus 183 ~ 183 (365)
T TIGR02660 183 A 183 (365)
T ss_pred h
Confidence 3
No 18
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=28.62 E-value=63 Score=20.45 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=18.7
Q ss_pred HhccCCCeeEEEEeecchhhhhhcccC
Q psy10393 87 CTGRWLPVLLSIKVRWMQAEYLRSDWK 113 (113)
Q Consensus 87 ~~~~g~~~~v~ch~SH~~~~~~~~~~~ 113 (113)
|++.| ..|+|.||=-++|--|.||+
T Consensus 45 L~~~G--~~vicY~s~Gs~E~~R~d~~ 69 (74)
T PF03537_consen 45 LKAQG--KKVICYFSIGSAEDWRPDWD 69 (74)
T ss_dssp HHHTT---EEEEEEESSEEETTSTT--
T ss_pred HHHCC--CEEEEEEeCceecCCccchh
Confidence 55555 67999999999999999884
No 19
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=28.56 E-value=41 Score=22.02 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=22.8
Q ss_pred HHHHHHHHHhccCCCeeEEEEeecchhh---hhhccc
Q psy10393 79 VKKRLTRECTGRWLPVLLSIKVRWMQAE---YLRSDW 112 (113)
Q Consensus 79 V~~al~~a~~~~g~~~~v~ch~SH~~~~---~~~~~~ 112 (113)
++++|.++|+.+|.. .=||++.+.... -++-||
T Consensus 22 l~daL~KaLk~R~l~-pe~C~V~~~~~~~~~~~~i~W 57 (74)
T cd01816 22 LRDALAKALKVRGLQ-PECCAVFRLGDGSSKKLRIDW 57 (74)
T ss_pred HHHHHHHHHHHcCCC-hhHeEEEEcCCCcccccccch
Confidence 578888899998887 456777766533 355555
No 20
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=27.98 E-value=1e+02 Score=25.72 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=43.6
Q ss_pred EEecChHHhHhHHHHHHHHHHHcCCccCCCcc---h--------hhhhh--hhhhhhhhhhhhhhccCceee---eeccc
Q psy10393 4 LVLGDPEDVKNNEDKIYSIAKRYGGIPAGESN---G--------RRGYM--LTYIIAYIRDFACDYYFIGDS---FETSV 67 (113)
Q Consensus 4 gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~---g--------~~W~~--~Rf~~pYLRd~l~~~G~~~DT---~ETA~ 67 (113)
..-|..+... ......++++..|-..++... . +.... .-|..||++.......+..++ .+.+.
T Consensus 79 ~I~GNHD~~~-~l~~~~~~l~~~gi~vl~~~~~~~~~~~v~l~~~~g~~~~~i~~lPy~~~~~~~~~~~~~~~~~~~~~~ 157 (407)
T PRK10966 79 VLAGNHDSVA-TLNESRDLLAFLNTTVIASASDDLGHQVIILPRRDGTPGAVLCAIPFLRPRDVITSQAGQSGIEKQQAL 157 (407)
T ss_pred EEcCCCCChh-hhhhHHHHHHHCCcEEEecccccCCcceEEEecCCCCeeeEEEECCCCCHHHHhhhhccCChhHHHHHH
Confidence 3445554433 244556777666654444321 0 11111 134568887654433222222 22222
Q ss_pred ccCchHHHHHHHHHHHHHHH--hccCCCeeEEEEee
Q psy10393 68 PWDKTVLLCINVKKRLTREC--TGRWLPVLLSIKVR 101 (113)
Q Consensus 68 ~Ws~v~~l~~~V~~al~~a~--~~~g~~~~v~ch~S 101 (113)
. +.+..+|+.+.+.+.+.- ...+.|.++|.|++
T Consensus 158 ~-~~i~~~~~~~~~~~~~~~~~~~~~~~~I~~aH~~ 192 (407)
T PRK10966 158 Q-AAIADHYQQLYQLACELRDELGQPLPIIATGHLT 192 (407)
T ss_pred H-HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeEE
Confidence 2 334444555444333311 11356788899965
No 21
>KOG2872|consensus
Probab=27.10 E-value=1.8e+02 Score=24.26 Aligned_cols=62 Identities=24% Similarity=0.228 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHHHHHHHHHHHHHHhccCCCeeE
Q psy10393 17 DKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLL 96 (113)
Q Consensus 17 ~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~~a~~~~g~~~~v 96 (113)
+++.+|..+.+|-...+ .| .+|..||||+ +.++|++++.+. .-.-+|-++
T Consensus 207 Aq~lQiFeSwageLspe----~f--~e~s~PYl~~-----------------------I~~~Vk~rl~~~-~~~~vPmi~ 256 (359)
T KOG2872|consen 207 AQALQIFESWAGELSPE----DF--EEFSLPYLRQ-----------------------IAEAVKKRLPEL-GLAPVPMIL 256 (359)
T ss_pred HHHHHHHHHhcccCCHH----HH--HHhhhHHHHH-----------------------HHHHHHHhhhhh-cCCCCceEE
Confidence 34556666666643222 33 3789999996 456677776655 223356668
Q ss_pred EEEeecchhhhh
Q psy10393 97 SIKVRWMQAEYL 108 (113)
Q Consensus 97 ~ch~SH~~~~~~ 108 (113)
|.-=||-..|-|
T Consensus 257 fakG~g~~Le~l 268 (359)
T KOG2872|consen 257 FAKGSGGALEEL 268 (359)
T ss_pred EEcCcchHHHHH
Confidence 877777665544
No 22
>KOG0496|consensus
Probab=26.86 E-value=74 Score=28.69 Aligned_cols=61 Identities=20% Similarity=0.179 Sum_probs=41.9
Q ss_pred hHhHHHHHHH----HHHHcCCc-cCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCch
Q psy10393 12 VKNNEDKIYS----IAKRYGGI-PAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKT 72 (113)
Q Consensus 12 V~~~~~~~~~----i~~~~GG~-~~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v 72 (113)
++...+.+.. +..+.||= .+.+---+-..-.|+-.++-+..+-..+.++.++.|.++|=..
T Consensus 144 ~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mC 209 (649)
T KOG0496|consen 144 MERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMC 209 (649)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEe
Confidence 4444444444 77788883 3333222233555777888899999999999999999999654
No 23
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.48 E-value=89 Score=24.00 Aligned_cols=76 Identities=20% Similarity=0.318 Sum_probs=47.0
Q ss_pred HHhHhHHHHHHHHHHHcCCccCCCc-------chhhhhhhhhhhh--hhhhhhhhccCceeeeecccccCchHHHHHHHH
Q psy10393 10 EDVKNNEDKIYSIAKRYGGIPAGES-------NGRRGYMLTYIIA--YIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 80 (113)
Q Consensus 10 ~~V~~~~~~~~~i~~~~GG~~~G~~-------~g~~W~~~Rf~~p--YLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~ 80 (113)
+.++...+.+.+++.++||...-+. .+.....-.+++| .+.+++.+.+=+.....-.+.=.++..-|..+.
T Consensus 59 ~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~ 138 (262)
T PF14257_consen 59 KDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLE 138 (262)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeeeeccccchHHHHHHHH
Confidence 4577889999999999999654332 2234444566666 355555544444444444444467777777666
Q ss_pred HHHHH
Q psy10393 81 KRLTR 85 (113)
Q Consensus 81 ~al~~ 85 (113)
.+|+.
T Consensus 139 arl~~ 143 (262)
T PF14257_consen 139 ARLKN 143 (262)
T ss_pred HHHHH
Confidence 66554
No 24
>cd07045 BMC_CcmK_like Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain. Bacterial micro-compartments are primitive protein-based organelles that sequester specific metabolic pathways in bacterial cells. The prototypical bacterial microcompartment is the carboxysome shell, a bacterial polyhedral organelle which increase the efficiency of CO2 fixation by encapsulating RuBisCO and carbonic anhydrase. They can be divided into two types: alpha-type carboxysomes (alpha-cyanobacteria and proteobacteria) and beta-type carboxysomes (beta-cyanobacteria). Potential functional differences between the two types are not yet fully understood. In addition to these proteins there are several homologous shell proteins including those found in pdu organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol and eut organelles involved in the cobalamin-dependent degradation of ethanolamine. Structure evidence shows that several carbox
Probab=25.93 E-value=1.1e+02 Score=19.84 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.2
Q ss_pred EEEEecChHHhHhHHHHHHHHHHHcCCc
Q psy10393 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGI 29 (113)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~ 29 (113)
++.+.|+-..|+...+...+.+++.|..
T Consensus 40 ~vii~GdvsaV~~Av~a~~~~~~~~~~~ 67 (84)
T cd07045 40 TVKITGDVAAVKAAVEAGAAAAERIGEL 67 (84)
T ss_pred EEEEEEcHHHHHHHHHHHHHHHhccCcE
Confidence 6789999999999999999999887653
No 25
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.39 E-value=1.7e+02 Score=23.97 Aligned_cols=68 Identities=15% Similarity=0.051 Sum_probs=39.2
Q ss_pred HHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhh---hhhcc----CceeeeecccccCchHHHHHHHHHH
Q psy10393 10 EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDF---ACDYY----FIGDSFETSVPWDKTVLLCINVKKR 82 (113)
Q Consensus 10 ~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pYLRd~---l~~~G----~~~DT~ETA~~Ws~v~~l~~~V~~a 82 (113)
+++-.....+.+.+++.|....... -...|.+..|+.+. +.++| .++||.-.+.|+ .+..+.+.+++.
T Consensus 112 ~~~l~~~~~~v~~a~~~G~~v~~~~----ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~-~v~~lv~~l~~~ 186 (378)
T PRK11858 112 EEVLERMVEAVEYAKDHGLYVSFSA----EDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPF-TMYELVKELVEA 186 (378)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEe----ccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHH-HHHHHHHHHHHh
Confidence 3344455666678888886432211 12334455555443 45555 467999999994 566666666543
No 26
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=24.92 E-value=1.7e+02 Score=24.01 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=38.1
Q ss_pred hhhhhhhccCceee-eecc-cccCchHH----HHHHHHHHHHHHHhccCCCeeEEEE
Q psy10393 49 IRDFACDYYFIGDS-FETS-VPWDKTVL----LCINVKKRLTRECTGRWLPVLLSIK 99 (113)
Q Consensus 49 LRd~l~~~G~~~DT-~ETA-~~Ws~v~~----l~~~V~~al~~a~~~~g~~~~v~ch 99 (113)
|-+.|...||-... +=-| -+|..-+. ..+.+++.|..+.+..+.|+++.+|
T Consensus 70 li~~L~~~GY~~~~~l~~~pYDWR~~~~~~~~~~~~lk~~ie~~~~~~~~kv~li~H 126 (389)
T PF02450_consen 70 LIENLEKLGYDRGKDLFAAPYDWRLSPAERDEYFTKLKQLIEEAYKKNGKKVVLIAH 126 (389)
T ss_pred HHHHHHhcCcccCCEEEEEeechhhchhhHHHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 44557888988753 3444 78877655 6677888888888888888888887
No 27
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=24.67 E-value=39 Score=23.38 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=27.0
Q ss_pred ccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeeccc
Q psy10393 29 IPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSV 67 (113)
Q Consensus 29 ~~~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~ 67 (113)
+.+|.+ ...+|--|-+++.+.++|+-+|.+.|..
T Consensus 58 liiGtG-----~~~~~~~~~~~~~l~~~gi~vevm~T~~ 91 (114)
T cd05125 58 LVIGTG-----RKSRPLSPELRKYFKKLGIAVEVVDTRN 91 (114)
T ss_pred EEEccC-----CCCCcCCHHHHHHHHHcCCEEEEECHHH
Confidence 456763 3357778899999999999999999964
No 28
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=24.48 E-value=76 Score=25.08 Aligned_cols=17 Identities=6% Similarity=-0.107 Sum_probs=13.3
Q ss_pred HhccCCCeeEEEEeecc
Q psy10393 87 CTGRWLPVLLSIKVRWM 103 (113)
Q Consensus 87 ~~~~g~~~~v~ch~SH~ 103 (113)
+++.+.+-++++|+||-
T Consensus 256 ~~~~~~k~l~ltHl~h~ 272 (302)
T PRK05184 256 LARLPIARKILIHINNT 272 (302)
T ss_pred hhcCCCCcEEEEEcCCC
Confidence 34556788999999984
No 29
>COG4047 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.02 E-value=1.7e+02 Score=23.16 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=53.5
Q ss_pred hHHhHhHHHHHHHHHHHcCCccC-------------CCcchhhhhhhhhhh---hhhhhhhhhc----------------
Q psy10393 9 PEDVKNNEDKIYSIAKRYGGIPA-------------GESNGRRGYMLTYII---AYIRDFACDY---------------- 56 (113)
Q Consensus 9 ~~~V~~~~~~~~~i~~~~GG~~~-------------G~~~g~~W~~~Rf~~---pYLRd~l~~~---------------- 56 (113)
++.|+.|.+.+..+.+.+|.... =++-|+.|..-+.+. --+||.+.++
T Consensus 19 Ee~vD~Qykav~~l~~~~~~~~~vrlaianaLvSYqLtgkGEewW~eF~kyf~~~~vr~i~ray~~fLp~s~fnrrlieq 98 (243)
T COG4047 19 EENVDPQYKAVSYLSKGIGSTKFVRLAIANALVSYQLTGKGEEWWWEFAKYFRGREVRDIYRAYKEFLPNSRFNRRLIEQ 98 (243)
T ss_pred HhhcCHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHhhccHHHHHHHHHHhccCCchhHHHHHH
Confidence 35699999999999999987421 112355565433221 1233322221
Q ss_pred -----cCceeeeecccccCchHHHHHHH---HHHHHHHHhccCCC-eeEEE
Q psy10393 57 -----YFIGDSFETSVPWDKTVLLCINV---KKRLTRECTGRWLP-VLLSI 98 (113)
Q Consensus 57 -----G~~~DT~ETA~~Ws~v~~l~~~V---~~al~~a~~~~g~~-~~v~c 98 (113)
--..+-+||- +|+|+..+|+.+ ..+|..++...+.. .+||+
T Consensus 99 KlrRi~ra~~fl~~L-~~~~~~~yyedm~~l~~~la~~lg~d~esKT~VFs 148 (243)
T COG4047 99 KLRRIRRAESFLETL-TEENIEVYYEDMSLLLEALARALGADRESKTVVFS 148 (243)
T ss_pred HHHHHHHHHHHHHHh-hhhhHHHHHhhHHHHHHHHHHHhCCCcccceEEEE
Confidence 1122334443 899999999876 56777888776664 55664
No 30
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=23.86 E-value=2.9e+02 Score=22.80 Aligned_cols=73 Identities=11% Similarity=-0.050 Sum_probs=42.8
Q ss_pred ecCh-HHhHhHHHHHHHHHHHcCCcc-------------CCC--------cchhhhhhhhhhhhhhhhhhhhccCceeee
Q psy10393 6 LGDP-EDVKNNEDKIYSIAKRYGGIP-------------AGE--------SNGRRGYMLTYIIAYIRDFACDYYFIGDSF 63 (113)
Q Consensus 6 EG~~-~~V~~~~~~~~~i~~~~GG~~-------------~G~--------~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ 63 (113)
.|.+ ..|....+.+.+.+++ +|-. .+. .-.+.|...|=-++-+|+.|.+.|++.|
T Consensus 228 DG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te-- 304 (362)
T PLN02269 228 DGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATE-- 304 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCH--
Confidence 3444 3455566666677777 6521 111 1234555544444568999999999876
Q ss_pred ecccccCchHHHHHHHHHHHHHHH
Q psy10393 64 ETSVPWDKTVLLCINVKKRLTREC 87 (113)
Q Consensus 64 ETA~~Ws~v~~l~~~V~~al~~a~ 87 (113)
+.+.++-+++++.+.+++
T Consensus 305 ------~e~~~i~~e~~~~v~~a~ 322 (362)
T PLN02269 305 ------AELKDIEKEIRKEVDDAV 322 (362)
T ss_pred ------HHHHHHHHHHHHHHHHHH
Confidence 445556666666555554
No 31
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=23.81 E-value=1.4e+02 Score=21.04 Aligned_cols=38 Identities=3% Similarity=-0.162 Sum_probs=26.9
Q ss_pred hhhhhhhhhhhccCceeeeecccccCchHHHHHHHHHHHH
Q psy10393 45 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 84 (113)
Q Consensus 45 ~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~ 84 (113)
+.|+|...|.+.|+ +..+..+--|+...+.+.++++++
T Consensus 21 n~~~l~~~l~~~G~--~v~~~~~v~Dd~~~i~~~l~~~~~ 58 (152)
T cd00886 21 SGPALVELLEEAGH--EVVAYEIVPDDKDEIREALIEWAD 58 (152)
T ss_pred hHHHHHHHHHHcCC--eeeeEEEcCCCHHHHHHHHHHHHh
Confidence 45788888888884 666666666887777777665544
No 32
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=23.50 E-value=83 Score=19.73 Aligned_cols=46 Identities=22% Similarity=0.111 Sum_probs=25.6
Q ss_pred HHHHHHHHH-HcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceee
Q psy10393 16 EDKIYSIAK-RYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62 (113)
Q Consensus 16 ~~~~~~i~~-~~GG~~~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT 62 (113)
......|++ ++.|+.-.+-......+.|. .+|..+.|.++|+++-.
T Consensus 5 ~~~Le~I~rsR~~Gi~q~~L~~~~~~D~r~-i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 5 YCLLERIARSRYNGITQSDLSKLLGIDPRS-IFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred HHHHHHHHhcCCCCEehhHHHHHhCCCchH-HHHHHHHHHHCCCEEEE
Confidence 444455553 34444322211112244444 78999999999998753
No 33
>PF14791 DNA_pol_B_thumb: DNA polymerase beta thumb ; PDB: 1HUZ_A 3K75_D 1HUO_A 2BPC_A 1RPL_A 1NOM_A 1ZQX_A 1ZQU_A 1ZQZ_A 1ZQV_A ....
Probab=23.45 E-value=18 Score=22.59 Aligned_cols=26 Identities=23% Similarity=0.292 Sum_probs=16.1
Q ss_pred EEEEecChHHhHhHHHHHHHHHHHcCCccCC
Q psy10393 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG 32 (113)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G 32 (113)
+++|+|++.. .+..+.+|++. |..+.
T Consensus 2 ll~~TGs~~f----nr~lR~~A~~~-g~~L~ 27 (64)
T PF14791_consen 2 LLYFTGSKEF----NRDLRQYAKKK-GMKLS 27 (64)
T ss_dssp HHHHHS-HHH----HHHHHHHHHHT-TEEEE
T ss_pred cccccCCHHH----HHHHHHHHHHc-CCeeC
Confidence 4678999888 44555666666 65443
No 34
>PF01218 Coprogen_oxidas: Coproporphyrinogen III oxidase; InterPro: IPR001260 Coprogen oxidase (i.e. coproporphyrin III oxidase or coproporphyrinogenase) catalyses the oxidative decarboxylation of coproporphyrinogen III to proto-porhyrinogen IX in the haem and chlorophyll biosynthetic pathways [, ]. The protein is a homodimer containing two internally bound iron atoms per molecule of native protein []. The enzyme is active in the presence of molecular oxygen that acts as an electron acceptor. The enzyme is widely distributed having been found in a variety of eukaryotic and prokaryotic sources.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 3EJO_B 3DWR_B 1VJU_B 2QT8_B 3DWS_A 2AEX_A 1TKL_B 1TK1_A 1TLB_Q 1TXN_A ....
Probab=23.09 E-value=89 Score=25.51 Aligned_cols=77 Identities=10% Similarity=-0.028 Sum_probs=55.7
Q ss_pred ChHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHHHHHHHHHHHHHH
Q psy10393 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC 87 (113)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~~a~ 87 (113)
.++++..-.+..+++|.+|+...= .-.++|-+.-|-+|-..+.-===|+..|.|.+ .+|++.-.+.++|-+++..+.
T Consensus 133 ~~eD~~~FH~~~K~~cd~~~~~~Y--p~fK~wcD~YFyipHR~E~RGiGGIFfD~l~~-~~~e~~f~f~~~vg~~fl~aY 209 (296)
T PF01218_consen 133 FEEDAKHFHQTLKEACDPHDPSYY--PRFKKWCDEYFYIPHRNEHRGIGGIFFDDLNT-GDFEKDFAFVKDVGEAFLPAY 209 (296)
T ss_dssp -HHHHHHHHHHHHHHHGGG-TTHH--HHHHHHHHHHSEEGGGTEESSSEEEEEEEE-S-S-HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcChHHH--HHHHhhchhhcchhhcCCCcCCceeeeccccc-cchhhHHHHHHHHHHHHHHHH
Confidence 356788888999999999985431 34889999999888855544445788999987 667777788888877777664
No 35
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=22.58 E-value=1.1e+02 Score=21.16 Aligned_cols=49 Identities=4% Similarity=0.002 Sum_probs=38.6
Q ss_pred chhhhhhhhhhhhhhhhhhhhccCceeeeec----ccccCchHHHHHHHHHHHHH
Q psy10393 35 NGRRGYMLTYIIAYIRDFACDYYFIGDSFET----SVPWDKTVLLCINVKKRLTR 85 (113)
Q Consensus 35 ~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ET----A~~Ws~v~~l~~~V~~al~~ 85 (113)
.|..|.+.|+ ..+++.|.+.|+=-|-+++ +..+.++.+..+++.+.|++
T Consensus 70 ~Gn~~a~~Rv--~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 70 EGNYRAEKRV--ERLKKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred hhhHHHHHHH--HHHHHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 3446666554 5689999999999999998 88888888888888777763
No 36
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=22.44 E-value=2.2e+02 Score=21.38 Aligned_cols=88 Identities=11% Similarity=0.015 Sum_probs=41.1
Q ss_pred hHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhh------hhhhhhhhccCce--eeeecccccCchHHHHHHHH
Q psy10393 9 PEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIA------YIRDFACDYYFIG--DSFETSVPWDKTVLLCINVK 80 (113)
Q Consensus 9 ~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~p------YLRd~l~~~G~~~--DT~ETA~~Ws~v~~l~~~V~ 80 (113)
.+++.....+..+++++..|... -. -|+.| .+++.+.++|+-. =|++ +.+|..-.. ....
T Consensus 107 ~~~~~~ei~~~~~~i~~~~G~~~-----~~----~fR~P~G~~~~~~~~~l~~~Gy~~v~w~v~-~~Dw~~~~~--~~~~ 174 (224)
T TIGR02884 107 DEKFKEELTGVEEEFKKVTGQKE-----MK----YFRPPRGVFSERTLAYTKELGYYTVFWSLA-FKDWKVDEQ--PGWQ 174 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC-----CC----EEeCCCCCcCHHHHHHHHHcCCcEEecccc-CcccCCCCC--CCHH
Confidence 44555666666666665554320 01 23333 3677788888853 1222 356642100 0011
Q ss_pred HHHHHHHhccCCCeeEEEEeec-chhhhh
Q psy10393 81 KRLTRECTGRWLPVLLSIKVRW-MQAEYL 108 (113)
Q Consensus 81 ~al~~a~~~~g~~~~v~ch~SH-~~~~~~ 108 (113)
..+.+.+..-....+|++|-.+ ..++.|
T Consensus 175 ~~~~~v~~~~~~g~IiLlHd~~~~t~~aL 203 (224)
T TIGR02884 175 YAYKQIMKKIHPGAILLLHAVSKDNAEAL 203 (224)
T ss_pred HHHHHHHhcCCCCcEEEEECCCCCHHHHH
Confidence 1222223333344689999753 234444
No 37
>PLN02321 2-isopropylmalate synthase
Probab=22.42 E-value=2.6e+02 Score=25.11 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=39.5
Q ss_pred hHHhHhHHHHHHHHHHHcCC--ccCCCcchhhhhhhhhhhhhhhhh---hhhccC----ceeeeecccccCchHHHHHHH
Q psy10393 9 PEDVKNNEDKIYSIAKRYGG--IPAGESNGRRGYMLTYIIAYIRDF---ACDYYF----IGDSFETSVPWDKTVLLCINV 79 (113)
Q Consensus 9 ~~~V~~~~~~~~~i~~~~GG--~~~G~~~g~~W~~~Rf~~pYLRd~---l~~~G~----~~DT~ETA~~Ws~v~~l~~~V 79 (113)
.+++-.....+.+.++++|. +..+.+ ...|-+..|+.+. +.++|. ++||...++|+ .+..+.+.+
T Consensus 205 ~ee~l~~~~~~V~~Ak~~G~~~v~fs~E-----Da~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~-~v~~li~~l 278 (632)
T PLN02321 205 PDEVVEIARDMVKYARSLGCEDVEFSPE-----DAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPS-EFGQLIADI 278 (632)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEecc-----cCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHH-HHHHHHHHH
Confidence 45555666777788899987 333432 2233333343322 566664 46999999993 455555555
Q ss_pred HH
Q psy10393 80 KK 81 (113)
Q Consensus 80 ~~ 81 (113)
++
T Consensus 279 ~~ 280 (632)
T PLN02321 279 KA 280 (632)
T ss_pred HH
Confidence 43
No 38
>TIGR03356 BGL beta-galactosidase.
Probab=22.40 E-value=1.2e+02 Score=25.36 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=37.6
Q ss_pred hhhhhhhhccCceeeeecccccCchHHH-----HH---HHHHHHHHHHhccCCCeeEEE-Eeec
Q psy10393 48 YIRDFACDYYFIGDSFETSVPWDKTVLL-----CI---NVKKRLTRECTGRWLPVLLSI-KVRW 102 (113)
Q Consensus 48 YLRd~l~~~G~~~DT~ETA~~Ws~v~~l-----~~---~V~~al~~a~~~~g~~~~v~c-h~SH 102 (113)
|-.|.-+-..+..+++=.++.||++.+- -+ +-...+-++|.+.|+.++|.. |+.+
T Consensus 56 y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~ 119 (427)
T TIGR03356 56 YEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDL 119 (427)
T ss_pred HHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCc
Confidence 3466655556677999999999999664 11 223456667788899877554 6664
No 39
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=21.80 E-value=1.7e+02 Score=20.38 Aligned_cols=38 Identities=8% Similarity=-0.041 Sum_probs=28.1
Q ss_pred hhhhhhhhhhhccCceeeeecccccCchHHHHHHHHHHHH
Q psy10393 45 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 84 (113)
Q Consensus 45 ~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~ 84 (113)
+.|+|+..|.+.|+ +..+..+--|+...+.+.+++++.
T Consensus 28 n~~~l~~~l~~~G~--~v~~~~~v~Dd~~~i~~~l~~~~~ 65 (144)
T TIGR00177 28 NGPLLAALLEEAGF--NVSRLGIVPDDPEEIREILRKAVD 65 (144)
T ss_pred cHHHHHHHHHHCCC--eEEEEeecCCCHHHHHHHHHHHHh
Confidence 46899999999984 555566666888887777766554
No 40
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=21.49 E-value=1.3e+02 Score=20.66 Aligned_cols=39 Identities=8% Similarity=0.078 Sum_probs=27.8
Q ss_pred hhhhhhhhhhhccCceeeeecccccCchHHHHHHHHHHHHH
Q psy10393 45 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTR 85 (113)
Q Consensus 45 ~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~~ 85 (113)
+.|+|...|.++|+ +.....+-=|+...+.+++.+++.+
T Consensus 18 n~~~l~~~l~~~G~--~v~~~~~v~Dd~~~i~~~l~~~~~~ 56 (144)
T PF00994_consen 18 NGPFLAALLEELGI--EVIRYGIVPDDPDAIKEALRRALDR 56 (144)
T ss_dssp HHHHHHHHHHHTTE--EEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC--eeeEEEEECCCHHHHHHHHHhhhcc
Confidence 35889988998888 5555555558888888888665553
No 41
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=21.47 E-value=1.3e+02 Score=23.63 Aligned_cols=29 Identities=14% Similarity=-0.135 Sum_probs=16.8
Q ss_pred hhhhhh--hh--hhhhhhhhhhhccCceeeeec
Q psy10393 37 RRGYML--TY--IIAYIRDFACDYYFIGDSFET 65 (113)
Q Consensus 37 ~~W~~~--Rf--~~pYLRd~l~~~G~~~DT~ET 65 (113)
..|..- |. ..+.+-|.|.++|+=+=-|=+
T Consensus 17 ~~W~~~~~rv~~nt~riL~lL~~~gikATFFv~ 49 (265)
T TIGR03006 17 DEWDSLPCRVERNTDRILDLLDRHGVKATFFTL 49 (265)
T ss_pred hhcCCccchHHHhHHHHHHHHHHcCCcEEEEEe
Confidence 345432 55 456677777777776544433
No 42
>COG3076 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.44 E-value=1.2e+02 Score=21.67 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=21.4
Q ss_pred hHHhHhHHHHHHHHHHHcCCccCCC
Q psy10393 9 PEDVKNNEDKIYSIAKRYGGIPAGE 33 (113)
Q Consensus 9 ~~~V~~~~~~~~~i~~~~GG~~~G~ 33 (113)
.+..++|.+++..++.++||.+-|=
T Consensus 84 aeiIDaQ~e~l~~L~Ek~~~~YDGW 108 (135)
T COG3076 84 AELIDAQVEQLMPLAEKFDVEYDGW 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHhCceecCc
Confidence 3558899999999999999998763
No 43
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=21.19 E-value=44 Score=23.20 Aligned_cols=69 Identities=16% Similarity=-0.017 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCC-ccCCCcchhhhhhhhhh-hhhhhhhhhhccCceeeeecccccCchHHHHHHHHHHHHHHHhccCC
Q psy10393 15 NEDKIYSIAKRYGG-IPAGESNGRRGYMLTYI-IAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWL 92 (113)
Q Consensus 15 ~~~~~~~i~~~~GG-~~~G~~~g~~W~~~Rf~-~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~~a~~~~g~ 92 (113)
..+.+.+++...-- +.+|. +...+|. -|-+++.+.+.|+-++.+.|..- -+.| ..|..+|-
T Consensus 47 ~~~~l~~ll~~~peivliGT-----G~~~~~~~~~~~~~~l~~~Gi~ve~m~T~aA----crTY--------N~L~~EgR 109 (117)
T cd05126 47 QPEELEELLEEGVEVIVIGT-----GQSGALKVPPETVEKLEKRGVEVLVLPTEEA----VKRY--------NELAGKGR 109 (117)
T ss_pred CHHHHHHHHhcCCCEEEEcC-----CCCccccCCHHHHHHHHhcCCEEEEcChHHH----HHHH--------HHHHhCCC
Confidence 34445566643222 34576 5667754 67899999999999999999642 2222 33566677
Q ss_pred CeeEEEEe
Q psy10393 93 PVLLSIKV 100 (113)
Q Consensus 93 ~~~v~ch~ 100 (113)
++....|+
T Consensus 110 rV~Aa~H~ 117 (117)
T cd05126 110 RVLAVIHV 117 (117)
T ss_pred eEEEEEeC
Confidence 77766664
No 44
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=20.22 E-value=1.2e+02 Score=18.63 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCeeEE
Q psy10393 73 VLLCINVKKRLTRECTGRWLPVLLS 97 (113)
Q Consensus 73 ~~l~~~V~~al~~a~~~~g~~~~v~ 97 (113)
.+++++|.++|++...=.|.|...+
T Consensus 15 ~~fc~rVt~aL~~GW~l~GsP~~t~ 39 (54)
T PF08410_consen 15 SAFCHRVTEALNEGWQLYGSPTYTF 39 (54)
T ss_pred HHHHHHHHHHHHcCCEecCCceEEE
Confidence 4789999999999888888887754
Done!