Query psy10393
Match_columns 113
No_of_seqs 107 out of 270
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 16:43:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uuu_A Alkyldihydroxyacetoneph 99.6 3.5E-16 1.2E-20 132.3 9.0 104 1-104 395-498 (584)
2 4bby_A Alkyldihydroxyacetoneph 99.5 1.9E-13 6.6E-18 116.4 9.6 103 2-104 467-571 (658)
3 1f0x_A DLDH, D-lactate dehydro 98.2 5.5E-08 1.9E-12 82.2 -2.8 99 2-104 393-498 (571)
4 1e8g_A Vanillyl-alcohol oxidas 97.9 2E-05 6.8E-10 65.9 6.8 95 2-101 354-461 (560)
5 3pm9_A Putative oxidoreductase 97.8 7.7E-05 2.6E-09 61.5 7.9 93 1-101 291-390 (476)
6 2exr_A Cytokinin dehydrogenase 96.5 0.00021 7.2E-09 59.3 -1.8 67 6-81 324-401 (524)
7 1wvf_A 4-cresol dehydrogenase 96.4 0.0084 2.9E-07 49.4 7.4 93 2-102 323-431 (520)
8 1hsk_A UDP-N-acetylenolpyruvoy 58.1 8.5 0.00029 29.7 3.5 35 1-35 274-309 (326)
9 1l7b_A DNA ligase; BRCT, autos 48.9 12 0.0004 23.9 2.5 46 1-49 11-69 (92)
10 2fvt_A Conserved hypothetical 46.0 7 0.00024 26.9 1.1 28 39-66 76-103 (135)
11 3rhg_A Putative phophotriester 45.5 52 0.0018 25.7 6.2 82 14-100 103-200 (365)
12 2ozl_A PDHE1-A type I, pyruvat 43.9 68 0.0023 25.1 6.7 75 5-87 229-325 (365)
13 2gm2_A Conserved hypothetical 41.5 8.4 0.00029 26.3 1.0 28 39-66 73-100 (132)
14 3qkb_A Uncharacterized protein 40.5 47 0.0016 22.4 4.5 35 70-104 54-88 (111)
15 2ab1_A Hypothetical protein; H 39.5 9.1 0.00031 25.8 0.8 51 39-101 70-121 (122)
16 2fi9_A Outer membrane protein; 38.0 11 0.00038 25.4 1.1 26 41-66 79-104 (128)
17 3l3e_A DNA topoisomerase 2-bin 34.1 34 0.0012 21.6 3.0 28 1-31 19-46 (107)
18 2w3z_A Putative deacetylase; P 33.1 1.4E+02 0.0047 22.6 6.8 21 8-28 182-202 (311)
19 1w1o_A Cytokinin dehydrogenase 30.6 16 0.00054 29.8 1.0 73 10-85 344-420 (534)
20 1zzk_A Heterogeneous nuclear r 30.2 50 0.0017 19.9 3.2 27 2-28 53-79 (82)
21 3cpk_A Uncharacterized protein 30.0 18 0.00061 25.5 1.1 29 39-67 97-125 (150)
22 1qs0_A 2-oxoisovalerate dehydr 29.3 1.4E+02 0.0048 23.7 6.4 74 5-87 273-368 (407)
23 2vyo_A ECU11_0510, chitooligos 29.0 1.3E+02 0.0044 21.8 5.8 80 8-102 99-188 (254)
24 3vej_A Ubiquitin-like protein 27.8 15 0.00052 20.6 0.4 16 64-79 3-18 (41)
25 1ydo_A HMG-COA lyase; TIM-barr 25.9 58 0.002 24.8 3.5 65 11-81 119-197 (307)
26 2kxh_B Peptide of FAR upstream 25.0 83 0.0028 16.5 3.0 19 13-31 11-29 (31)
27 2iel_A Hypothetical protein TT 24.0 61 0.0021 22.6 3.0 26 87-112 92-119 (138)
28 2cw6_A Hydroxymethylglutaryl-C 23.2 1.1E+02 0.0037 22.8 4.5 63 14-82 121-197 (298)
29 2kjw_A TS9, 30S ribosomal prot 22.9 58 0.002 21.0 2.5 37 8-47 57-93 (96)
30 3l46_A Protein ECT2; alternati 22.2 68 0.0023 21.0 2.8 29 1-32 25-53 (112)
31 2odf_A AGR_C_3887P, hypothetic 22.0 1.1E+02 0.0037 22.8 4.2 28 73-100 128-155 (257)
32 2d8m_A DNA-repair protein XRCC 21.7 52 0.0018 21.5 2.2 28 1-31 26-53 (129)
33 1use_A VAsp, vasodilator-stimu 21.1 83 0.0028 17.9 2.6 21 72-92 24-44 (45)
34 1w85_A Pyruvate dehydrogenase 20.9 3E+02 0.01 21.3 7.9 74 5-87 233-329 (368)
35 2cok_A Poly [ADP-ribose] polym 20.0 54 0.0018 21.6 2.0 28 1-31 14-41 (113)
No 1
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.64 E-value=3.5e-16 Score=132.27 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=98.1
Q ss_pred CEEEEecChHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHHHHHHH
Q psy10393 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 80 (113)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~ 80 (113)
+++.|+|+++.|+.+.+++.++|+++||...++...+.|+..|+..||+|+.++++|.+.+++||++|||++++++++++
T Consensus 395 llve~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~ 474 (584)
T 2uuu_A 395 SIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAK 474 (584)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHH
Confidence 35789999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCeeEEEEeecch
Q psy10393 81 KRLTRECTGRWLPVLLSIKVRWMQ 104 (113)
Q Consensus 81 ~al~~a~~~~g~~~~v~ch~SH~~ 104 (113)
+.+.+.+.+.|.+.+++||++|+-
T Consensus 475 ~~l~~~~~~~g~~~~~~~h~gH~g 498 (584)
T 2uuu_A 475 QTFVKHFKDQGIPAWICAHISHTY 498 (584)
T ss_dssp HHHHHHHHTTTCCEEEEEEEEEEE
T ss_pred HHHHhHHHhcCCeeEEEEEEEeec
Confidence 999999999999999999999974
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.46 E-value=1.9e-13 Score=116.43 Aligned_cols=103 Identities=51% Similarity=0.975 Sum_probs=97.7
Q ss_pred EEEEecChHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHHHHHHHH
Q psy10393 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 81 (113)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~ 81 (113)
++.|||+.+.+..+.+.+.++++++||+..++..+++|...||..||+|+...+.+.+.+++||++||++++++++++++
T Consensus 467 ~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~ 546 (658)
T 4bby_A 467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKE 546 (658)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC--CeeEEEEeecch
Q psy10393 82 RLTRECTGRWL--PVLLSIKVRWMQ 104 (113)
Q Consensus 82 al~~a~~~~g~--~~~v~ch~SH~~ 104 (113)
.+.+.+.+.+. |.+.+||++|+.
T Consensus 547 ~l~~~~~~~g~~~~~~~~~~~~h~~ 571 (658)
T 4bby_A 547 RIRRECKEKGVQFPPLSTCRVTQTY 571 (658)
T ss_dssp HHHHHHHHTTCSSCCEEEEEEEEEC
T ss_pred HHHHHHHhcCccccccceEEEEEEe
Confidence 99999988887 567999999974
No 3
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=98.22 E-value=5.5e-08 Score=82.21 Aligned_cols=99 Identities=10% Similarity=0.035 Sum_probs=72.3
Q ss_pred EEEEecChHHhHhHHHHHHHHHHHcCCccC--CCcchhhhhhhhhhhh----hhhhhhhh-ccCceeeeecccccCchHH
Q psy10393 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDSFETSVPWDKTVL 74 (113)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~--G~~~g~~W~~~Rf~~p----YLRd~l~~-~G~~~DT~ETA~~Ws~v~~ 74 (113)
++-|+|+.... ..+++.+++++++|... .++.+++|...||..+ ++|+...+ .| ...++|||+||++++.
T Consensus 393 lve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~~~l~~ 469 (571)
T 1f0x_A 393 LLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRRNDTEW 469 (571)
T ss_dssp EEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCTTCSCC
T ss_pred EEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecHHHhHH
Confidence 45666666532 35667778888866433 4567888888999987 78887665 33 3689999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCeeEEEEeecch
Q psy10393 75 LCINVKKRLTRECTGRWLPVLLSIKVRWMQ 104 (113)
Q Consensus 75 l~~~V~~al~~a~~~~g~~~~v~ch~SH~~ 104 (113)
+ +.+++.+.+.......-++++||..|+.
T Consensus 470 ~-~~~~~~l~~~~~~~~~~GH~g~g~~H~~ 498 (571)
T 1f0x_A 470 Y-EHLPPEIDSQLVHKLYYGHFMCYVFHQD 498 (571)
T ss_dssp S-CCCCHHHHTTEEEEEEEEETTTTEEEEE
T ss_pred H-HHHHHHHHhhCccceeEEEEcCCceEEe
Confidence 9 9998888765544344567788888874
No 4
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=97.90 E-value=2e-05 Score=65.89 Aligned_cols=95 Identities=12% Similarity=-0.029 Sum_probs=69.3
Q ss_pred EEEEecChHHhHhHHHHHHHHHHHcCCccC--CCcc--hhhhhhhhhhh----hhhhhh---hhhccCceeeeeccccc-
Q psy10393 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW- 69 (113)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~--G~~~--g~~W~~~Rf~~----pYLRd~---l~~~G~~~DT~ETA~~W- 69 (113)
++.|+|+++.|+.+.+++.++|+++|+..+ .+.+ .+.|.. |+.. |+++.. .|..|-...++++++||
T Consensus 354 ~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~ 432 (560)
T 1e8g_A 354 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVS 432 (560)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSS
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCC
Confidence 466999999999999999999999998533 2222 344554 7655 776653 23332235668999999
Q ss_pred -CchHHHHHHHHHHHHHHHhccCCCeeEEEEee
Q psy10393 70 -DKTVLLCINVKKRLTRECTGRWLPVLLSIKVR 101 (113)
Q Consensus 70 -s~v~~l~~~V~~al~~a~~~~g~~~~v~ch~S 101 (113)
++++++++.+++. +++.|.+..++.|+.
T Consensus 433 ~~~l~~~~~~~~~~----~~~~g~~~~~~gH~g 461 (560)
T 1e8g_A 433 GEDAMMQYAVTKKR----CQEAGLDFIGTFTVG 461 (560)
T ss_dssp HHHHHHHHHHHHHH----HHHHTCCCCEEEEEC
T ss_pred HHHHHHHHHHHHHH----HHHcCCceEEEEEec
Confidence 9999999999654 456678888888874
No 5
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=97.75 E-value=7.7e-05 Score=61.46 Aligned_cols=93 Identities=9% Similarity=-0.080 Sum_probs=66.4
Q ss_pred CEEEEecChHHhHhHHHHHHHHHHHcCCccC---C---Ccchhhhhhhhhhhh-hhhhhhhhccCceeeeecccccCchH
Q psy10393 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA---G---ESNGRRGYMLTYIIA-YIRDFACDYYFIGDSFETSVPWDKTV 73 (113)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~---G---~~~g~~W~~~Rf~~p-YLRd~l~~~G~~~DT~ETA~~Ws~v~ 73 (113)
+++.|+|+.++++.+.+++.+++.++|+..- - +...+-|. .|-..+ .++ ..|. ..+.++++|||+++
T Consensus 291 llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~-~R~~~~~~~~----~~g~-~~~~Dv~vP~~~l~ 364 (476)
T 3pm9_A 291 VLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWK-LREEISPAQK----PEGG-SIKHDISVPVAAVP 364 (476)
T ss_dssp EEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHH-HHHTHHHHTG----GGCC-EECCEEECCGGGHH
T ss_pred EEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHH-HHHHHHHHHh----hcCC-ceeEEEEeeHHHHH
Confidence 3678899988888889999999999987431 1 12334564 444443 333 3354 68999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEee
Q psy10393 74 LLCINVKKRLTRECTGRWLPVLLSIKVR 101 (113)
Q Consensus 74 ~l~~~V~~al~~a~~~~g~~~~v~ch~S 101 (113)
++++.+++.+.+... +.+..+++|++
T Consensus 365 ~~~~~~~~~~~~~~~--~~~~~~~gH~g 390 (476)
T 3pm9_A 365 QFIEQANAAVVALIP--GARPVPFGHLG 390 (476)
T ss_dssp HHHHHHHHHHHHHST--TCEEEEEEEGG
T ss_pred HHHHHHHHHHHHhcC--CCeEEEEEEeC
Confidence 999999887765532 56777888876
No 6
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=96.50 E-value=0.00021 Score=59.31 Aligned_cols=67 Identities=6% Similarity=-0.132 Sum_probs=50.4
Q ss_pred ec-ChHHhHhHHHHHHHHHHHcCCccCCCc----------chhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHH
Q psy10393 6 LG-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74 (113)
Q Consensus 6 EG-~~~~V~~~~~~~~~i~~~~GG~~~G~~----------~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~ 74 (113)
+| ++++|+.+.+++.++++++||....+. ....|...++..|.+.. . ++++++|||++++
T Consensus 324 ~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----~~Dv~VP~s~l~~ 394 (524)
T 2exr_A 324 DSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----WLNLFVSKRDIGD 394 (524)
T ss_dssp TTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----CEEEEEEHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----eeEEEECHHHHHH
Confidence 78 778899999999999999999755432 22337666665554432 1 3699999999999
Q ss_pred HHHHHHH
Q psy10393 75 LCINVKK 81 (113)
Q Consensus 75 l~~~V~~ 81 (113)
+.+.|.+
T Consensus 395 ~~~~v~~ 401 (524)
T 2exr_A 395 FNRTVFK 401 (524)
T ss_dssp HHHHCCC
T ss_pred HHHHHHH
Confidence 9988865
No 7
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=96.42 E-value=0.0084 Score=49.37 Aligned_cols=93 Identities=12% Similarity=-0.126 Sum_probs=57.7
Q ss_pred EEEEecChHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhh----------------hccCceeeeec
Q psy10393 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFAC----------------DYYFIGDSFET 65 (113)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pYLRd~l~----------------~~G~~~DT~ET 65 (113)
++.|+|++++++.+.+.+.++++++|+..+. ...+.+ +-...++|..+. ..+.+.++.-.
T Consensus 323 ~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 398 (520)
T 1wvf_A 323 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIV---TQEEAG-DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVS 398 (520)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHHHTCCEEE---EHHHHT-TCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHcCCeEEE---ecccch-hhhHHHHHHHhhccCchhhhhccccccCCCceEEecccc
Confidence 4559999999999999999999999985432 112211 122233333222 01223333344
Q ss_pred ccccCchHHHHHHHHHHHHHHHhccCCCeeEEEEeec
Q psy10393 66 SVPWDKTVLLCINVKKRLTRECTGRWLPVLLSIKVRW 102 (113)
Q Consensus 66 A~~Ws~v~~l~~~V~~al~~a~~~~g~~~~v~ch~SH 102 (113)
..+|++++++++.+++.+ ++.+.+..++.|+.+
T Consensus 399 p~~~~~l~~~~~~~~~~~----~~~~~~~~~~gh~gd 431 (520)
T 1wvf_A 399 EARGSECKKQAAMAKRVL----HKYGLDYVAEFIVAP 431 (520)
T ss_dssp ESCHHHHHHHHHHHHHHH----HHTTCCCCEEEEECS
T ss_pred CCCHHHHHHHHHHHHHHH----HHcCCCeeEeecccC
Confidence 556689998887775544 456777778888753
No 8
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=58.12 E-value=8.5 Score=29.68 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=29.7
Q ss_pred CEEEEec-ChHHhHhHHHHHHHHHHHcCCccCCCcc
Q psy10393 1 MALLVLG-DPEDVKNNEDKIYSIAKRYGGIPAGESN 35 (113)
Q Consensus 1 ~~~gfEG-~~~~V~~~~~~~~~i~~~~GG~~~G~~~ 35 (113)
+++-++| +.+++....+.+.+++++++|+.++.++
T Consensus 274 ~lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~le~Ev 309 (326)
T 1hsk_A 274 FMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREV 309 (326)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBCS
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHhhCCeeEEEE
Confidence 3567788 6788999999999999999999887754
No 9
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=48.89 E-value=12 Score=23.91 Aligned_cols=46 Identities=13% Similarity=0.318 Sum_probs=31.5
Q ss_pred CEEEEecChHHhHhHHHHHHHHHHHcCCc------------cCCCcchhhhhhh-hhhhhhh
Q psy10393 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI------------PAGESNGRRGYML-TYIIAYI 49 (113)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~------------~~G~~~g~~W~~~-Rf~~pYL 49 (113)
+++.|+|.-.. .+..+.+++.++||. ..|+.+|.+-.+. .+.+|-+
T Consensus 11 ~~~v~TG~l~~---~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii 69 (92)
T 1l7b_A 11 LTFVITGELSR---PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTL 69 (92)
T ss_dssp CEEECSTTTTS---CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCE
T ss_pred cEEEEecCCCC---CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEE
Confidence 46888997644 578889999999994 3477677665544 3444543
No 10
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=46.03 E-value=7 Score=26.87 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.7
Q ss_pred hhhhhhhhhhhhhhhhhccCceeeeecc
Q psy10393 39 GYMLTYIIAYIRDFACDYYFIGDSFETS 66 (113)
Q Consensus 39 W~~~Rf~~pYLRd~l~~~G~~~DT~ETA 66 (113)
+...+|--|-+|+.|.+.|+-+|.+.|.
T Consensus 76 G~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 76 GADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 4556787789999999999999999996
No 11
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}
Probab=45.48 E-value=52 Score=25.69 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHcC-CccCCCcch-----hhhhhhhhhhhhhhhhhhhc--------cCceeee-ecccccCchHHHHHH
Q psy10393 14 NNEDKIYSIAKRYG-GIPAGESNG-----RRGYMLTYIIAYIRDFACDY--------YFIGDSF-ETSVPWDKTVLLCIN 78 (113)
Q Consensus 14 ~~~~~~~~i~~~~G-G~~~G~~~g-----~~W~~~Rf~~pYLRd~l~~~--------G~~~DT~-ETA~~Ws~v~~l~~~ 78 (113)
.....+.+++++.| .++.+.+.- -.|... ...-|.+.+.+- ++-+--+ |++.+|.--+.-.+.
T Consensus 103 r~~~~l~~la~~~gi~i~~~tG~y~~~~~P~~~~~--~~~~L~~~~~~ei~~gi~~t~vkag~IGEiGld~~~t~~q~~~ 180 (365)
T 3rhg_A 103 RDIRKLKQVAELTGINVVASSGLYIEKFEGKRLAD--DIDAMAKMIDDELNIGIDGTDIRAGMIGEIGVSPFFTDGEKNS 180 (365)
T ss_dssp CCHHHHHHHHHHHCCEEECEECCCCHHHHGGGGGS--CHHHHHHHHHHHHHTCSTTSSCCCCEEEEEECCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHCCcEEEEeCccCCCCCchhhcC--CHHHHHHHHHHHHHhccccCCceeEEEEEEEcCCCCCHHHHHH
Confidence 45677888888888 555444322 122222 333344333221 1112223 888888543333344
Q ss_pred HHHHHHHHHhcc-CCCeeEEEEe
Q psy10393 79 VKKRLTRECTGR-WLPVLLSIKV 100 (113)
Q Consensus 79 V~~al~~a~~~~-g~~~~v~ch~ 100 (113)
+++.++-+ .+- |.| |++|.
T Consensus 181 f~aq~~~A-~~~~glP--V~iH~ 200 (365)
T 3rhg_A 181 LRAAALAQ-NNNPYAS--MNIHM 200 (365)
T ss_dssp HHHHHHHH-TTCTTCE--EEEEC
T ss_pred HHHHHHHH-HHhcCCc--EEEEC
Confidence 44444433 333 555 88886
No 12
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=43.94 E-value=68 Score=25.13 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=45.6
Q ss_pred EecC-hHHhHhHHHHHHHHHHHcCCccC-------------CC--------cchhhhhhhhhhhhhhhhhhhhccCceee
Q psy10393 5 VLGD-PEDVKNNEDKIYSIAKRYGGIPA-------------GE--------SNGRRGYMLTYIIAYIRDFACDYYFIGDS 62 (113)
Q Consensus 5 fEG~-~~~V~~~~~~~~~i~~~~GG~~~-------------G~--------~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT 62 (113)
..|. ...|....+.+.+.+++.+|-.+ +. ...+.|++.+=-++-+|+.|.+.|++.+.
T Consensus 229 VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~ 308 (365)
T 2ozl_A 229 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVE 308 (365)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHH
Confidence 4663 46677777777777777777321 11 12345654443334578899999998763
Q ss_pred eecccccCchHHHHHHHHHHHHHHH
Q psy10393 63 FETSVPWDKTVLLCINVKKRLTREC 87 (113)
Q Consensus 63 ~ETA~~Ws~v~~l~~~V~~al~~a~ 87 (113)
.+.++.+++++.|.+++
T Consensus 309 --------~~~~i~~~~~~~v~~a~ 325 (365)
T 2ozl_A 309 --------ELKEIDVEVRKEIEDAA 325 (365)
T ss_dssp --------HHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHH
Confidence 44556666665555554
No 13
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=41.55 E-value=8.4 Score=26.29 Aligned_cols=28 Identities=4% Similarity=-0.121 Sum_probs=24.5
Q ss_pred hhhhhhhhhhhhhhhhhccCceeeeecc
Q psy10393 39 GYMLTYIIAYIRDFACDYYFIGDSFETS 66 (113)
Q Consensus 39 W~~~Rf~~pYLRd~l~~~G~~~DT~ETA 66 (113)
+...+|--|-+|+.|.+.|+-+|.+.|.
T Consensus 73 G~~~~~l~p~~~~~l~~~GI~vE~m~T~ 100 (132)
T 2gm2_A 73 GERQQFPSTDVLAACLTRGIGLEAMTNA 100 (132)
T ss_dssp TTSCCCCCHHHHHHHHHHTCEEEEECHH
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 4566788899999999999999999994
No 14
>3qkb_A Uncharacterized protein; beta/alpha-propeller, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.73A {Pediococcus pentosaceus}
Probab=40.50 E-value=47 Score=22.37 Aligned_cols=35 Identities=11% Similarity=-0.042 Sum_probs=32.0
Q ss_pred CchHHHHHHHHHHHHHHHhccCCCeeEEEEeecch
Q psy10393 70 DKTVLLCINVKKRLTRECTGRWLPVLLSIKVRWMQ 104 (113)
Q Consensus 70 s~v~~l~~~V~~al~~a~~~~g~~~~v~ch~SH~~ 104 (113)
+.+.++++.+.+++.+...+.|-.++|.||+....
T Consensus 54 ~~~~ear~eA~~rM~e~A~~lGANAVIgvrfdts~ 88 (111)
T 3qkb_A 54 NMFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTEV 88 (111)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhh
Confidence 68899999999999999999999999999998764
No 15
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=39.46 E-value=9.1 Score=25.77 Aligned_cols=51 Identities=8% Similarity=-0.090 Sum_probs=36.4
Q ss_pred hhhhhh-hhhhhhhhhhhccCceeeeecccccCchHHHHHHHHHHHHHHHhccCCCeeEEEEee
Q psy10393 39 GYMLTY-IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLLSIKVR 101 (113)
Q Consensus 39 W~~~Rf-~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~~a~~~~g~~~~v~ch~S 101 (113)
+...+| -.|-+++.|.++|+-+|.+.|.. .-+.| ..|..+|-++...-|++
T Consensus 70 G~~~~~~~~~~~~~~l~~~gI~ve~m~T~~----A~rty--------N~L~~EgR~VaAal~~t 121 (122)
T 2ab1_A 70 GMSEALKVPSSTVEYLKKHGIDVRVLQTEQ----AVKEY--------NALVAQGVRVGGVFHST 121 (122)
T ss_dssp CSSCCSCCCHHHHHHHHHTTCEEEEECHHH----HHHHH--------HHHHHTTCCEEEEEECC
T ss_pred CCCCccCCCHHHHHHHHHcCCEEEEeCHHH----HHHHH--------HHHHhCCCcEEEEEeec
Confidence 566788 66899999999999999998853 22222 33555676777666654
No 16
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=38.01 E-value=11 Score=25.43 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.3
Q ss_pred hhhhhhhhhhhhhhhccCceeeeecc
Q psy10393 41 MLTYIIAYIRDFACDYYFIGDSFETS 66 (113)
Q Consensus 41 ~~Rf~~pYLRd~l~~~G~~~DT~ETA 66 (113)
..+|--|-+|+.|.++|+-+|.+.|.
T Consensus 79 ~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 79 ELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp SCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 36788899999999999999999994
No 17
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=34.11 E-value=34 Score=21.55 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=21.1
Q ss_pred CEEEEecChHHhHhHHHHHHHHHHHcCCccC
Q psy10393 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA 31 (113)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~ 31 (113)
+++.+.|.-. ..+..+.++++++||.+.
T Consensus 19 ~~i~isg~~~---~~r~~l~~li~~~Gg~v~ 46 (107)
T 3l3e_A 19 VVVCVSKKLS---KKQSELNGIAASLGADYR 46 (107)
T ss_dssp CEEEECGGGG---GGHHHHHHHHHHTTCEEE
T ss_pred eEEEEeCCCh---HhHHHHHHHHHHcCCEEe
Confidence 4677777654 567888999999999643
No 18
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=33.11 E-value=1.4e+02 Score=22.60 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=14.2
Q ss_pred ChHHhHhHHHHHHHHHHHcCC
Q psy10393 8 DPEDVKNNEDKIYSIAKRYGG 28 (113)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG 28 (113)
+.+++.....+..+++++..|
T Consensus 182 s~~~~~~Ei~~~~~~L~~~~G 202 (311)
T 2w3z_A 182 NTQQIVSEVTRTQNALKDQLG 202 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHhC
Confidence 456667777777777777655
No 19
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=30.58 E-value=16 Score=29.83 Aligned_cols=73 Identities=8% Similarity=-0.063 Sum_probs=39.5
Q ss_pred HHhHhHHHHHHHHHHHcCCccCC-Ccchhhhhhhhhhhhh--hhhh-hhhccCceeeeecccccCchHHHHHHHHHHHHH
Q psy10393 10 EDVKNNEDKIYSIAKRYGGIPAG-ESNGRRGYMLTYIIAY--IRDF-ACDYYFIGDSFETSVPWDKTVLLCINVKKRLTR 85 (113)
Q Consensus 10 ~~V~~~~~~~~~i~~~~GG~~~G-~~~g~~W~~~Rf~~pY--LRd~-l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~al~~ 85 (113)
+.++...+.+.++++.+|+.... ..+...+. .++..++ +|.. ++..+- -..++++|||+++++.+++.+.+.+
T Consensus 344 ~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~-~~~~~~~w~~r~~~~~~~~~--~~~d~~vP~s~l~~~~~~~~~~l~~ 420 (534)
T 1w1o_A 344 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFL-DRVHGEEVALNKLGLWRVPH--PWLNMFVPRSRIADFDRGVFKGILQ 420 (534)
T ss_dssp CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHH-THHHHHHHHHHHTTCSSSCC--CCEEEEEEGGGHHHHHHHHTTTTTT
T ss_pred hhhHHHHHHHHHhhcccCCcceeccchHHHHh-hhhhhhHHHHhhccccccCC--ccccEEecHHHHHhHHHHHHHHHhh
Confidence 56777788888888777763221 11122222 1222221 2221 111111 0238889999999999888665543
No 20
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=30.22 E-value=50 Score=19.93 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=22.4
Q ss_pred EEEEecChHHhHhHHHHHHHHHHHcCC
Q psy10393 2 ALLVLGDPEDVKNNEDKIYSIAKRYGG 28 (113)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG 28 (113)
++-..|+.+.|+..++.+.++.+..+|
T Consensus 53 ~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 53 IITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 355678999999999999999887765
No 21
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=29.98 E-value=18 Score=25.52 Aligned_cols=29 Identities=7% Similarity=-0.168 Sum_probs=24.9
Q ss_pred hhhhhhhhhhhhhhhhhccCceeeeeccc
Q psy10393 39 GYMLTYIIAYIRDFACDYYFIGDSFETSV 67 (113)
Q Consensus 39 W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~ 67 (113)
+...+|-.|-++..|.++|+-+|.+.|..
T Consensus 97 G~~~~~l~p~~~~~L~~~GIgvE~M~T~a 125 (150)
T 3cpk_A 97 GRRQHLLGPEQVRPLLAMGVGVEAMDTQA 125 (150)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHHH
T ss_pred CCCCCCCCHHHHHHHHHcCCEEEEeCHHH
Confidence 45567888999999999999999999853
No 22
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=29.31 E-value=1.4e+02 Score=23.69 Aligned_cols=74 Identities=11% Similarity=-0.044 Sum_probs=43.4
Q ss_pred EecCh-HHhHhHHHHHHHHHHHcCCccC-------------CCcc--------hhhhhhhhhhhhhhhhhhhhccCceee
Q psy10393 5 VLGDP-EDVKNNEDKIYSIAKRYGGIPA-------------GESN--------GRRGYMLTYIIAYIRDFACDYYFIGDS 62 (113)
Q Consensus 5 fEG~~-~~V~~~~~~~~~i~~~~GG~~~-------------G~~~--------g~~W~~~Rf~~pYLRd~l~~~G~~~DT 62 (113)
..|.+ ..|....+.+.+.+++.+|-.+ ++.+ .+.|.+ +=-+.-+|+.|.+.|++.+.
T Consensus 273 VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~-~DPi~~~~~~L~~~g~~~~~ 351 (407)
T 1qs0_A 273 VDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWSEE 351 (407)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTT-CCHHHHHHHHHHHTTSCCHH
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHCCCCCHH
Confidence 45643 5677777777777777777211 2112 225654 31223588999999998773
Q ss_pred eecccccCchHHHHHHHHHHHHHHH
Q psy10393 63 FETSVPWDKTVLLCINVKKRLTREC 87 (113)
Q Consensus 63 ~ETA~~Ws~v~~l~~~V~~al~~a~ 87 (113)
.+.++.+++++.|.+++
T Consensus 352 --------~~~~i~~~~~~~v~~a~ 368 (407)
T 1qs0_A 352 --------EHQATTAEFEAAVIAAQ 368 (407)
T ss_dssp --------HHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 23
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}
Probab=29.04 E-value=1.3e+02 Score=21.78 Aligned_cols=80 Identities=9% Similarity=0.090 Sum_probs=42.3
Q ss_pred ChHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhh--------hhhhhhhccCce--eeeecccccCchHHHHH
Q psy10393 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY--------IRDFACDYYFIG--DSFETSVPWDKTVLLCI 77 (113)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pY--------LRd~l~~~G~~~--DT~ETA~~Ws~v~~l~~ 77 (113)
+.+++.....+..++.++..|... .-|+.|| .++.+.+.|+-. =++++ -+|..-..
T Consensus 99 s~~~~~~ei~~~~~~l~~~~G~~~----------~~fr~P~~~G~~~~~~~~~l~~~G~~~v~w~vd~-~Dw~~~~~--- 164 (254)
T 2vyo_A 99 SQDALENNVDREIDTIDGLSGTEI----------RYAAVPICNGQVNSEMYNILTERGVLPVGYTFCP-YDYDDPVG--- 164 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCC----------CEEECCCBTTEECHHHHHHHHTTTCEECCCSBCG-GGSSSHHH---
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCC----------eEEeCCccCCCCCHHHHHHHHHCCCEEEEeccCC-cccccchH---
Confidence 345566677777777777665421 1133333 667778888753 12222 35765433
Q ss_pred HHHHHHHHHHhccCCCeeEEEEeec
Q psy10393 78 NVKKRLTRECTGRWLPVLLSIKVRW 102 (113)
Q Consensus 78 ~V~~al~~a~~~~g~~~~v~ch~SH 102 (113)
+.+.+.+.++......+|..|-.+
T Consensus 165 -~~~~v~~~~~~~~~g~IiL~Hd~~ 188 (254)
T 2vyo_A 165 -EFESMIEGSDPKHHSFIILMHDGQ 188 (254)
T ss_dssp -HHHHHHHTSCTTTCCEEEEEEGGG
T ss_pred -HHHHHHHhccccCCCcEEEEeCCc
Confidence 222333333322235678899765
No 24
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=27.84 E-value=15 Score=20.62 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=12.6
Q ss_pred ecccccCchHHHHHHH
Q psy10393 64 ETSVPWDKTVLLCINV 79 (113)
Q Consensus 64 ETA~~Ws~v~~l~~~V 79 (113)
+-.+||+.+..|.++-
T Consensus 3 ~l~VPWd~Ie~lL~~~ 18 (41)
T 3vej_A 3 DLTVPWDDIEALLKNN 18 (41)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHH
Confidence 3469999999988764
No 25
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=25.93 E-value=58 Score=24.75 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=38.8
Q ss_pred HhHhHHHHHHHHHHHcCCcc-------CCCcchhhhhhhhhhhhhhhhh---hhhccC----ceeeeecccccCchHHHH
Q psy10393 11 DVKNNEDKIYSIAKRYGGIP-------AGESNGRRGYMLTYIIAYIRDF---ACDYYF----IGDSFETSVPWDKTVLLC 76 (113)
Q Consensus 11 ~V~~~~~~~~~i~~~~GG~~-------~G~~~g~~W~~~Rf~~pYLRd~---l~~~G~----~~DT~ETA~~Ws~v~~l~ 76 (113)
++-.....+.+.++++|-.. .|.. ..+|.+..|+-+. +.++|. ++||.-.++| ..+.++.
T Consensus 119 e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~v~~lv 192 (307)
T 1ydo_A 119 ESLHILKQVNNDAQKANLTTRAYLSTVFGCP-----YEKDVPIEQVIRLSEALFEFGISELSLGDTIGAANP-AQVETVL 192 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECTTCBT-----TTBCCCHHHHHHHHHHHHHHTCSCEEEECSSCCCCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEecCC-----cCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCcCH-HHHHHHH
Confidence 34445566677888888754 2221 2345555565444 466775 7899999887 3455555
Q ss_pred HHHHH
Q psy10393 77 INVKK 81 (113)
Q Consensus 77 ~~V~~ 81 (113)
+.+++
T Consensus 193 ~~l~~ 197 (307)
T 1ydo_A 193 EALLA 197 (307)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55533
No 26
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=25.01 E-value=83 Score=16.48 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=14.7
Q ss_pred HhHHHHHHHHHHHcCCccC
Q psy10393 13 KNNEDKIYSIAKRYGGIPA 31 (113)
Q Consensus 13 ~~~~~~~~~i~~~~GG~~~ 31 (113)
.....++++|+.+.||-..
T Consensus 11 adA~~RaRQIaAKig~~~~ 29 (31)
T 2kxh_B 11 KDALQRARQIAAKIGGDAG 29 (31)
T ss_dssp HHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 3456789999999998654
No 27
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=24.04 E-value=61 Score=22.58 Aligned_cols=26 Identities=12% Similarity=-0.052 Sum_probs=20.0
Q ss_pred HhccC--CCeeEEEEeecchhhhhhccc
Q psy10393 87 CTGRW--LPVLLSIKVRWMQAEYLRSDW 112 (113)
Q Consensus 87 ~~~~g--~~~~v~ch~SH~~~~~~~~~~ 112 (113)
+.+.+ ..-+|..=.-|.-.++++.||
T Consensus 92 v~~~~~~~deiIV~T~Ph~vs~~fh~Dw 119 (138)
T 2iel_A 92 LLAHPGAYQGIVLSTLPPGLSRWLRLDV 119 (138)
T ss_dssp HHHSTTSCSEEEEEECCTTTCHHHHTTH
T ss_pred HHhcCCCCceEEEEcCCchHHHHHhccH
Confidence 34445 566777778899999999998
No 28
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=23.25 E-value=1.1e+02 Score=22.80 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHcCCcc-------CCCcchhhhhhhhhhhhhhhhh---hhhccC----ceeeeecccccCchHHHHHHH
Q psy10393 14 NNEDKIYSIAKRYGGIP-------AGESNGRRGYMLTYIIAYIRDF---ACDYYF----IGDSFETSVPWDKTVLLCINV 79 (113)
Q Consensus 14 ~~~~~~~~i~~~~GG~~-------~G~~~g~~W~~~Rf~~pYLRd~---l~~~G~----~~DT~ETA~~Ws~v~~l~~~V 79 (113)
.....+.+.++++|-.. .|.. ..+|.+..|+-+. +.++|. ++||...+.| ..+.++.+.+
T Consensus 121 ~~~~~~i~~a~~~G~~v~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~~~~lv~~l 194 (298)
T 2cw6_A 121 QRFDAILKAAQSANISVRGYVSCALGCP-----YEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTP-GIMKDMLSAV 194 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTTCBT-----TTBSCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEEeeCC-----cCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCcCH-HHHHHHHHHH
Confidence 34455667788888744 2221 2345555554443 466665 7899998887 4455555555
Q ss_pred HHH
Q psy10393 80 KKR 82 (113)
Q Consensus 80 ~~a 82 (113)
++.
T Consensus 195 ~~~ 197 (298)
T 2cw6_A 195 MQE 197 (298)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 29
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=22.94 E-value=58 Score=21.00 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=27.5
Q ss_pred ChHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhh
Q psy10393 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIA 47 (113)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~p 47 (113)
++++++...+++.++..++||...-. +.|=..|+..|
T Consensus 57 ~ee~~~~~ve~~~~iI~~~gG~i~~v---e~WG~R~LAY~ 93 (96)
T 2kjw_A 57 DQSQLALEKEIIQRALENYGARVEKV---EELGLRRLAYP 93 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCSCC---EECCCCCCCCS
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEE---ecccccccccc
Confidence 46789999999999999999976533 35655555443
No 30
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=22.15 E-value=68 Score=20.97 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=21.2
Q ss_pred CEEEEecChHHhHhHHHHHHHHHHHcCCccCC
Q psy10393 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG 32 (113)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G 32 (113)
+++.|.|-.. ..++.+.+++..+||.+.+
T Consensus 25 ~~Ic~sGf~~---~er~~l~~~i~~~GG~~~~ 53 (112)
T 3l46_A 25 CILSFLGFSD---EEKTNMEEMTEMQGGKYLP 53 (112)
T ss_dssp CEECEESCCH---HHHHHHHHHHHHTTCEECC
T ss_pred eEEEEeCCCH---HHHHHHHHHHHHcCCEECc
Confidence 3566666443 4578899999999998765
No 31
>2odf_A AGR_C_3887P, hypothetical protein ATU2144; structural genomics, unknown FUNC PSI-2, MCSG, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.56.5.9
Probab=22.03 E-value=1.1e+02 Score=22.79 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEe
Q psy10393 73 VLLCINVKKRLTRECTGRWLPVLLSIKV 100 (113)
Q Consensus 73 ~~l~~~V~~al~~a~~~~g~~~~v~ch~ 100 (113)
.+.|+++.+.|.+..++.|...++-||-
T Consensus 128 ~PYH~al~~~l~~~~a~~g~~vlid~HS 155 (257)
T 2odf_A 128 VPFHDRVSEIIAERQAAGRKVVVVTIHS 155 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 3457777777777777778888899994
No 32
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.66 E-value=52 Score=21.54 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=20.9
Q ss_pred CEEEEecChHHhHhHHHHHHHHHHHcCCccC
Q psy10393 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA 31 (113)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~ 31 (113)
+++.|.|.. ...+..+.++++.+||.+.
T Consensus 26 ~~i~itG~~---~~~r~~l~~~i~~~Gg~v~ 53 (129)
T 2d8m_A 26 VVVVLSGFQ---NPFRSELRDKALELGAKYR 53 (129)
T ss_dssp EEEEEESCC---TTHHHHHHHHHHHTTEEEE
T ss_pred eEEEEeCCC---cHHHHHHHHHHHHcCCEEe
Confidence 357778865 3467888899999999643
No 33
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=21.13 E-value=83 Score=17.88 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHhccCC
Q psy10393 72 TVLLCINVKKRLTRECTGRWL 92 (113)
Q Consensus 72 v~~l~~~V~~al~~a~~~~g~ 92 (113)
+..+-+.|-+|++..|.+.|.
T Consensus 24 lqK~K~EIIeAi~~El~~~~~ 44 (45)
T 1use_A 24 LQKVKEEIIEAFVQELRKRGS 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 344556666677777766654
No 34
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=20.86 E-value=3e+02 Score=21.33 Aligned_cols=74 Identities=14% Similarity=0.036 Sum_probs=45.2
Q ss_pred EecC-hHHhHhHHHHHHHHHHHcCCc-------------c-CCCcc--------hhhhhhhhhhhhhhhhhhhhccCcee
Q psy10393 5 VLGD-PEDVKNNEDKIYSIAKRYGGI-------------P-AGESN--------GRRGYMLTYIIAYIRDFACDYYFIGD 61 (113)
Q Consensus 5 fEG~-~~~V~~~~~~~~~i~~~~GG~-------------~-~G~~~--------g~~W~~~Rf~~pYLRd~l~~~G~~~D 61 (113)
.+|. ...|....+.+.+.+++.+|- . -+..+ .+.|.+ |=-++-+|+.|.+.|++.+
T Consensus 233 VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~-~dPi~~~~~~L~~~g~~~~ 311 (368)
T 1w85_A 233 VDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK-KDPLVRFRKFLEAKGLWSE 311 (368)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHT-TCHHHHHHHHHHHTTCCCH
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHcCCCCH
Confidence 4563 467777788888777776661 1 11111 456765 3222358899999999877
Q ss_pred eeecccccCchHHHHHHHHHHHHHHH
Q psy10393 62 SFETSVPWDKTVLLCINVKKRLTREC 87 (113)
Q Consensus 62 T~ETA~~Ws~v~~l~~~V~~al~~a~ 87 (113)
. .+.++.+++++.+.++.
T Consensus 312 ~--------~~~~i~~~~~~~v~~a~ 329 (368)
T 1w85_A 312 E--------EENNVIEQAKEEIKEAI 329 (368)
T ss_dssp H--------HHHHHHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHHHHHHH
Confidence 3 44566666666666554
No 35
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=20.01 E-value=54 Score=21.62 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=21.5
Q ss_pred CEEEEecChHHhHhHHHHHHHHHHHcCCccC
Q psy10393 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA 31 (113)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~ 31 (113)
+++.|.|+-+. .+..+.+++.++||.+.
T Consensus 14 ~~~ViTG~l~~---~R~e~k~~ie~~Ggkv~ 41 (113)
T 2cok_A 14 MKILTLGKLSR---NKDEVKAMIEKLGGKLT 41 (113)
T ss_dssp CEEEECSCCSS---CHHHHHHHHHHTTCEEE
T ss_pred CEEEEEecCCC---CHHHHHHHHHHCCCEEc
Confidence 57889997532 57888899999999643
Done!