BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10394
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29742|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1
Length = 1678
Score = 92.8 bits (229), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/49 (87%), Positives = 45/49 (91%)
Query: 34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
QIATKYHEQLT KALIDLFE FKSY+GLFYFL SIVN+SQD EVHFKYI
Sbjct: 685 QIATKYHEQLTNKALIDLFEGFKSYDGLFYFLSSIVNFSQDPEVHFKYI 733
>sp|Q68FD5|CLH1_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3
Length = 1675
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/49 (79%), Positives = 48/49 (97%)
Query: 34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732
>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5
Length = 1675
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/49 (79%), Positives = 48/49 (97%)
Query: 34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732
>sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1
Length = 1675
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/49 (79%), Positives = 48/49 (97%)
Query: 34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732
>sp|P11442|CLH1_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3
Length = 1675
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/49 (79%), Positives = 48/49 (97%)
Query: 34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732
>sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2
Length = 1640
Score = 88.6 bits (218), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/66 (59%), Positives = 53/66 (80%)
Query: 17 MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQE 76
+H + ++++ Q+A+KYHEQL T+AL++LFESFKSY+GLFYFLGSIVN+SQD +
Sbjct: 667 LHAMLSANIRQNLQLCVQVASKYHEQLGTQALVELFESFKSYKGLFYFLGSIVNFSQDPD 726
Query: 77 VHFKYI 82
VH KYI
Sbjct: 727 VHLKYI 732
>sp|P34574|CLH_CAEEL Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1
PE=3 SV=1
Length = 1681
Score = 85.9 bits (211), Expect = 6e-17, Method: Composition-based stats.
Identities = 40/66 (60%), Positives = 51/66 (77%)
Query: 17 MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQE 76
+ + Q++++ V QIA+KYHEQL LI++FE+ KSYEGLFYFLGSIVN+SQD E
Sbjct: 669 LKAMLTQNIRQNLQVVVQIASKYHEQLGADKLIEMFENHKSYEGLFYFLGSIVNFSQDPE 728
Query: 77 VHFKYI 82
VHFKYI
Sbjct: 729 VHFKYI 734
>sp|Q10161|CLH_SCHPO Probable clathrin heavy chain OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=chc1 PE=1 SV=1
Length = 1666
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 48/67 (71%)
Query: 16 YMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQ 75
Y+ + +L++ V QIAT+Y + + + +I++FE FK++EGL+Y+LGSIVN ++D
Sbjct: 663 YLREMLRSNLRQNLQIVVQIATRYSDLVGAQRIIEMFEKFKTFEGLYYYLGSIVNITEDP 722
Query: 76 EVHFKYI 82
EV +KYI
Sbjct: 723 EVVYKYI 729
>sp|Q2QYW2|CLH2_ORYSJ Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica
GN=Os12g0104800 PE=3 SV=1
Length = 1708
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 32 VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
V Q A +Y EQL A I LFE FKSYEGL++FLG+ ++ S+D ++HFKYI
Sbjct: 696 VVQAAKEYSEQLGVDACIKLFEQFKSYEGLYFFLGAYLSSSEDPDIHFKYI 746
>sp|Q2RBN7|CLH1_ORYSJ Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica
GN=Os11g0104900 PE=3 SV=1
Length = 1708
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 32 VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
V Q A +Y EQL A I LFE FKSYEGL++FLG+ ++ S+D ++HFKYI
Sbjct: 696 VVQAAKEYSEQLGVDACIKLFEQFKSYEGLYFFLGAYLSSSEDPDIHFKYI 746
>sp|Q0WNJ6|CLAH1_ARATH Clathrin heavy chain 1 OS=Arabidopsis thaliana GN=CHC1 PE=1 SV=1
Length = 1705
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 32 VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
+ Q +Y EQL A I LFE FKSYEGL++FLGS ++ S+D E+HFKYI
Sbjct: 696 IVQACKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSMSEDPEIHFKYI 746
>sp|Q0WLB5|CLAH2_ARATH Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1
Length = 1703
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 32 VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
+ Q +Y EQL A I LFE FKSYEGL++FLGS ++ S+D E+HFKYI
Sbjct: 696 IVQACKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSMSEDPEIHFKYI 746
>sp|P25870|CLH_DICDI Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1
Length = 1694
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 32 VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
V IA Y +Q+T +A+I +FESF+ YEGL+ +L +V S EVHFKYI
Sbjct: 683 VVAIAVSYSDQITPEAIIAMFESFRLYEGLYLYLTQVVVTSTSPEVHFKYI 733
>sp|P22137|CLH_YEAST Clathrin heavy chain OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CHC1 PE=1 SV=1
Length = 1653
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 32 VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
V Q+ATK+ + + LI LFE + + EGL+Y+L S+VN ++D++V +KYI
Sbjct: 688 VVQVATKFSDLIGPSTLIKLFEDYNATEGLYYYLASLVNLTEDKDVVYKYI 738
>sp|B9MR54|PNP_CALBD Polyribonucleotide nucleotidyltransferase OS=Caldicellulosiruptor
bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=pnp
PE=3 SV=1
Length = 701
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 7 RDRGRPKTRYMHTVFPQDLKEKKLEVS--------QIATKYHEQLTTKALIDLFESFKSY 58
R+ G+PK Y + P+D+K+K E++ QI K L + E FK++
Sbjct: 223 REVGKPKMEYQKRIVPEDIKQKVREIAYDKVYQYVQIPDKIERDKKLDELKE--EVFKAF 280
Query: 59 EG 60
EG
Sbjct: 281 EG 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,578,968
Number of Sequences: 539616
Number of extensions: 940888
Number of successful extensions: 2458
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2443
Number of HSP's gapped (non-prelim): 17
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)