Query psy10394
Match_columns 82
No_of_seqs 105 out of 117
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 16:44:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_A Clathrin heavy chain; a 100.0 8.5E-33 2.9E-37 245.7 0.5 68 15-82 665-732 (1630)
2 2ezd_A High mobility group pro 84.8 0.29 9.9E-06 26.2 0.8 10 5-14 4-13 (26)
3 3vdp_A Recombination protein R 40.0 15 0.00052 27.1 2.1 24 48-71 104-127 (212)
4 2kw3_A DNA-binding protein RFX 38.6 12 0.0004 23.7 1.2 38 17-66 8-45 (68)
5 3mkb_A Hemoglobin subunit alph 38.0 17 0.00058 23.7 2.0 43 21-63 2-44 (140)
6 1vdd_A Recombination protein R 32.5 17 0.0006 27.1 1.5 23 49-71 91-113 (228)
7 1q1f_A Neuroglobin; globin fol 31.6 36 0.0012 21.2 2.6 39 26-64 6-44 (151)
8 1cg5_A Protein (hemoglobin); o 31.5 26 0.00089 22.3 2.0 41 26-66 7-47 (141)
9 3u1d_A Uncharacterized protein 30.6 15 0.00051 25.4 0.8 46 4-59 83-128 (151)
10 2xk0_A Polycomb protein PCL; t 30.4 17 0.00057 23.0 0.9 19 56-75 25-43 (69)
11 3d1k_A Hemoglobin subunit alph 27.7 24 0.00082 22.4 1.3 40 26-65 7-46 (142)
12 2d89_A EHBP1 protein; all alph 27.2 9 0.00031 24.8 -0.8 21 18-38 58-78 (119)
13 3dmc_A NTF2-like protein; stru 24.3 31 0.001 21.5 1.3 26 20-45 2-27 (134)
14 3g46_A Globin-1; oxygen transp 24.2 35 0.0012 21.7 1.6 47 20-66 9-55 (146)
15 1wmu_A Hemoglobin D alpha chai 23.8 33 0.0011 21.6 1.4 37 27-63 8-44 (141)
16 2r80_A Hemoglobin subunit alph 22.5 30 0.001 22.0 1.1 37 27-63 8-44 (141)
17 1out_A Hemoglobin I; heme, oxy 22.4 34 0.0012 21.9 1.3 41 26-66 8-48 (143)
18 3bom_A Hemoglobin subunit alph 21.8 38 0.0013 21.5 1.4 40 26-65 8-47 (143)
19 1bby_A RAP30; average structur 21.7 18 0.00062 22.3 -0.1 30 46-80 11-40 (69)
20 3m1i_C Exportin-1; heat repeat 20.8 27 0.00094 28.6 0.7 63 17-79 3-67 (1049)
No 1
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.97 E-value=8.5e-33 Score=245.75 Aligned_cols=68 Identities=57% Similarity=1.017 Sum_probs=67.2
Q ss_pred hhHHHhcccCcchhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeeeeeccccccccCccceeeeC
Q psy10394 15 RYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82 (82)
Q Consensus 15 ~~L~elL~~N~rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYI 82 (82)
.||++||+.|+|||||+|||||+||||+||+++||+|||+|||+||||||||||||+|||||||||||
T Consensus 665 ~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi 732 (1630)
T 1xi4_A 665 ECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732 (1630)
T ss_pred HHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999998
No 2
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=84.77 E-value=0.29 Score=26.20 Aligned_cols=10 Identities=70% Similarity=1.042 Sum_probs=8.6
Q ss_pred CccCCCCccc
Q psy10394 5 GKRDRGRPKT 14 (82)
Q Consensus 5 ~~~~~~~~~~ 14 (82)
.||.|||||-
T Consensus 4 pKrpRgRpkG 13 (26)
T 2ezd_A 4 PKRPRGRPKG 13 (26)
T ss_dssp CCCCSSCCTT
T ss_pred CcCCCCCcCc
Confidence 5899999984
No 3
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=40.01 E-value=15 Score=27.07 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=19.6
Q ss_pred HHHHHHhcCccceeeeeecccccc
Q psy10394 48 LIDLFESFKSYEGLFYFLGSIVNY 71 (82)
Q Consensus 48 lI~lFE~~ks~EGLyyyLgsiVn~ 71 (82)
=+..+|+-+.|.|+|+.||..++-
T Consensus 104 Dv~aiE~t~~y~G~YhVLgG~iSP 127 (212)
T 3vdp_A 104 DVVAMEKVKEYKGVYHVLHGVISP 127 (212)
T ss_dssp HHHHHHTTSCCCEEEEECSSCCBT
T ss_pred HHHHHHhhCccceEEEecCCccCc
Confidence 345689999999999999977643
No 4
>2kw3_A DNA-binding protein RFX5; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=38.59 E-value=12 Score=23.69 Aligned_cols=38 Identities=8% Similarity=0.258 Sum_probs=30.7
Q ss_pred HHHhcccCcchhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeeeeec
Q psy10394 17 MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLG 66 (82)
Q Consensus 17 L~elL~~N~rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLg 66 (82)
|..=|+++|..+.|-.|+ .|+.=-|+|...|-||.||-
T Consensus 8 l~qklk~~I~K~vQskVd------------~ilqdV~kfsD~eKLyLYLk 45 (68)
T 2kw3_A 8 LLQRLRGTISKAVQNKVE------------GILQDVQKFSDNDKLYLYLQ 45 (68)
T ss_dssp HHHHHHHSCCHHHHHHHH------------HHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHH------------HHHHHHHHhcchhhhhheee
Confidence 333478899999998875 67777899999999999984
No 5
>3mkb_A Hemoglobin subunit alpha; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2 PDB: 1gcv_A* 1gcw_A*
Probab=37.99 E-value=17 Score=23.68 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=32.7
Q ss_pred cccCcchhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeee
Q psy10394 21 FPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFY 63 (82)
Q Consensus 21 L~~N~rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyy 63 (82)
|+..-++.++-......+..+.+|.+.+..||+.|-.+.-+|=
T Consensus 2 Ls~~~~~~V~~~w~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~ 44 (140)
T 3mkb_A 2 FTGVERSTIGAIAKILASTPEAYGAEALARLFATHPGAKSYFD 44 (140)
T ss_dssp CCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHCGGGGGGCC
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHChHHHhhCc
Confidence 3333355666666777778899999999999999998887553
No 6
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=32.50 E-value=17 Score=27.07 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=19.4
Q ss_pred HHHHHhcCccceeeeeecccccc
Q psy10394 49 IDLFESFKSYEGLFYFLGSIVNY 71 (82)
Q Consensus 49 I~lFE~~ks~EGLyyyLgsiVn~ 71 (82)
+..+|+-+.|.|+|+.||..++-
T Consensus 91 v~aiE~t~~y~G~YhVLgG~lSP 113 (228)
T 1vdd_A 91 VIALERSGEYRGLYHVLHGVLSP 113 (228)
T ss_dssp HHHTTTTSSCCSEEEECSSCCBG
T ss_pred HHHHHHhcccceEEEecCCccCc
Confidence 56689999999999999987543
No 7
>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*
Probab=31.59 E-value=36 Score=21.21 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeeee
Q psy10394 26 KEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYF 64 (82)
Q Consensus 26 rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyyy 64 (82)
++.++-......+..+.+|..-+..||+.+-....+|=+
T Consensus 6 ~~~v~~sw~~v~~~~~~~g~~~y~~lf~~~P~~~~~F~~ 44 (151)
T 1q1f_A 6 SELIRQSWRVVSRSPLEHGTVLFARLFALEPSLLPLFQY 44 (151)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHHHHHCGGGGGGCCB
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHChHHHHhCCc
Confidence 445555556666678899999999999999998888875
No 8
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=31.48 E-value=26 Score=22.32 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=30.4
Q ss_pred chhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeeeeec
Q psy10394 26 KEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLG 66 (82)
Q Consensus 26 rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLg 66 (82)
++.++-.......-.+.+|..-+..||+.+-...-+|=-++
T Consensus 7 ~~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~f~ 47 (141)
T 1cg5_A 7 KKAIEELGNLIKANAEAWGADALARLFELHPQTKTYFSKFS 47 (141)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGGGGGGTTCS
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHCchHHHHhHHhC
Confidence 34455555555567789999999999999988888775443
No 9
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=30.61 E-value=15 Score=25.37 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=26.5
Q ss_pred CCccCCCCccchhHHHhcccCcchhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccc
Q psy10394 4 GGKRDRGRPKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYE 59 (82)
Q Consensus 4 ~~~~~~~~~~~~~L~elL~~N~rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~E 59 (82)
+|.++||||.+.|- |. .+..... ..|++.-+...+=.|-+...-+|
T Consensus 83 ~~~~~rGrP~k~Y~---LT---~~Gr~~l----~~y~~la~~~alr~l~~~v~~t~ 128 (151)
T 3u1d_A 83 RAKSVDDPPTTFYA---VT---GEGIALL----RAVSMYEEAAVWRSVYEQMERTD 128 (151)
T ss_dssp CCTTSSSCCCEEEE---EC---HHHHHHH----HHTTCSTHHHHTHHHHHHSCCCH
T ss_pred cCcccCCCCceEEE---EC---HHHHHHH----HHhHHHhHHHHHHHHHHHhhccH
Confidence 57789999999885 22 2222222 23544444466666666654444
No 10
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=30.36 E-value=17 Score=22.97 Aligned_cols=19 Identities=42% Similarity=0.875 Sum_probs=14.0
Q ss_pred CccceeeeeeccccccccCc
Q psy10394 56 KSYEGLFYFLGSIVNYSQDQ 75 (82)
Q Consensus 56 ks~EGLyyyLgsiVn~seDp 75 (82)
+..+|+| |||.||+.+++.
T Consensus 25 rw~DG~f-YLGtIVd~~~~~ 43 (69)
T 2xk0_A 25 KCNDGRF-YLGTIIDQTSDQ 43 (69)
T ss_dssp ECTTSCE-EEEEEEEECSSC
T ss_pred EecCCCE-EEEEEEecCCce
Confidence 4567876 589999887665
No 11
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=27.69 E-value=24 Score=22.38 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeeeee
Q psy10394 26 KEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFL 65 (82)
Q Consensus 26 rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyyyL 65 (82)
++.++-.........+.+|.+-+..||+.+-.+..+|=-.
T Consensus 7 ~~~v~~sw~~v~~~~~~~g~~~~~rlF~~~P~~~~~F~~~ 46 (142)
T 3d1k_A 7 KAAVRALWSKIGKSSDAIGNDALSRMIVVYPQTKIYFSHW 46 (142)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHSGGGGGGGTTS
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHCccHHHHHHHh
Confidence 3344444555555678999999999999998877766433
No 12
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.19 E-value=9 Score=24.77 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.2
Q ss_pred HHhcccCcchhHHHHHHHHHH
Q psy10394 18 HTVFPQDLKEKKLEVSQIATK 38 (82)
Q Consensus 18 ~elL~~N~rqNlQiVVqVA~k 38 (82)
..+-..|..+|++.+.++|.+
T Consensus 58 ~~l~~~~~~~n~~~af~~a~~ 78 (119)
T 2d89_A 58 KSLNPQDIKENNKKAYDGFAS 78 (119)
T ss_dssp GGCCTTCSHHHHHHHHHHHHH
T ss_pred hhhcccCHHHHHHHHHHHHHH
Confidence 344457889999999999843
No 13
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=24.35 E-value=31 Score=21.52 Aligned_cols=26 Identities=12% Similarity=0.003 Sum_probs=21.7
Q ss_pred hcccCcchhHHHHHHHHHHHHhhhCH
Q psy10394 20 VFPQDLKEKKLEVSQIATKYHEQLTT 45 (82)
Q Consensus 20 lL~~N~rqNlQiVVqVA~kYsd~lg~ 45 (82)
|+..|-.+|++++-++...|.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~f~~A~~~ 27 (134)
T 3dmc_A 2 MMTHYSDNTLKVAHQGFEFFTQGLAT 27 (134)
T ss_dssp CBCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHHHHHHHc
Confidence 56778899999999999999877654
No 14
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=24.15 E-value=35 Score=21.75 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=35.2
Q ss_pred hcccCcchhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeeeeec
Q psy10394 20 VFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLG 66 (82)
Q Consensus 20 lL~~N~rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLg 66 (82)
+|+..-++.++-.......-.+.+|..-+..||+.+-.+--+|=..+
T Consensus 9 ~Lt~~~~~~I~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~ 55 (146)
T 3g46_A 9 QLTADVKKDLRDSWKVIGSDKKGNGVALMTTLFADNQETIGYFKRLG 55 (146)
T ss_dssp TCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHCGGGGGGGGGGC
T ss_pred cCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHCHHHHHHHHHHc
Confidence 45555555666666666667889999999999999998888765443
No 15
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=23.78 E-value=33 Score=21.63 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeee
Q psy10394 27 EKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFY 63 (82)
Q Consensus 27 qNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyy 63 (82)
+.++-.......-.+.+|..-+..||+.+-...-+|=
T Consensus 8 ~~v~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~ 44 (141)
T 1wmu_A 8 QLIQHVWEKVLEHQEDFGAEALERMFIVYPSTKTYFP 44 (141)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHSGGGGGGCT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHCccHHHHHH
Confidence 3344444444556789999999999999988887664
No 16
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=22.48 E-value=30 Score=22.00 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeee
Q psy10394 27 EKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFY 63 (82)
Q Consensus 27 qNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyy 63 (82)
+.++-.........+.+|.+-+..||+.+-....+|=
T Consensus 8 ~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~ 44 (141)
T 2r80_A 8 SNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFP 44 (141)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHSGGGGGGCT
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHCchHHHHhh
Confidence 3444444445556789999999999999988877663
No 17
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=22.40 E-value=34 Score=21.85 Aligned_cols=41 Identities=10% Similarity=0.060 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeeeeec
Q psy10394 26 KEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLG 66 (82)
Q Consensus 26 rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLg 66 (82)
++.++-.........+.+|..-+..||+.+-.+.-+|=-++
T Consensus 8 ~~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~f~ 48 (143)
T 1out_A 8 KSVVKAFWGKISGKADVVGAEALGRMLTAYPQTKTYFSHWA 48 (143)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHSGGGGGGGTTSS
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHCccHHHHHHHcC
Confidence 34445455555556789999999999999988887775443
No 18
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=21.75 E-value=38 Score=21.51 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeeeee
Q psy10394 26 KEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFL 65 (82)
Q Consensus 26 rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyyyL 65 (82)
++.++-.......-.+.+|.+-+..||+.+-.+..+|=-.
T Consensus 8 ~~~v~~sw~~v~~~~~~~g~~~~~rlF~~~P~~~~~F~~~ 47 (143)
T 3bom_A 8 KANVKAIWGKILPKSDEIGEQALSRMLVVYPQTKAYFSHW 47 (143)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHSGGGGGGCTTS
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHChHHHHHHHHc
Confidence 3344444445555678999999999999998887766443
No 19
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=21.72 E-value=18 Score=22.29 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCccceeeeeeccccccccCccceee
Q psy10394 46 KALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFK 80 (82)
Q Consensus 46 ~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFK 80 (82)
+.|.++||++. ||=|..++..|+-|+.+.|
T Consensus 11 d~lF~~Fek~~-----yw~lK~L~~~t~QP~~yLK 40 (69)
T 1bby_A 11 DMLFSAFEKHQ-----YYNLKDLVDITKQPVVYLK 40 (69)
T ss_dssp HHHHHHHHHCS-----CBCHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHhhcC-----CCcHHHHHHHHcCcHHHHH
Confidence 46788899884 7778888888888877654
No 20
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=20.76 E-value=27 Score=28.56 Aligned_cols=63 Identities=11% Similarity=0.216 Sum_probs=42.2
Q ss_pred HHHhcccCcchhHHHHHHHHHHHHhhhCH--HHHHHHHHhcCccceeeeeeccccccccCcccee
Q psy10394 17 MHTVFPQDLKEKKLEVSQIATKYHEQLTT--KALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHF 79 (82)
Q Consensus 17 L~elL~~N~rqNlQiVVqVA~kYsd~lg~--~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhF 79 (82)
|+++|..+...+++-+.|+.....+-=.. ...-+.+++++...+-+-++..|+..++|++|.|
T Consensus 3 ~~~~~~~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~ 67 (1049)
T 3m1i_C 3 MEGILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKF 67 (1049)
T ss_dssp GGGGGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHH
T ss_pred hhHhcCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHH
Confidence 67888888888898888887665432111 1133455667776777777888877777777643
Done!