RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10394
(82 letters)
>gnl|CDD|128594 smart00299, CLH, Clathrin heavy chain repeat homology.
Length = 140
Score = 38.8 bits (91), Expect = 4e-05
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 36 ATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN-YSQDQEVHFKYI 82
+ + + +++LFE E L +L S + S++ + K I
Sbjct: 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLI 48
>gnl|CDD|216037 pfam00637, Clathrin, Region in Clathrin and VPS. Each region is
about 140 amino acids long. The regions are composed of
multiple alpha helical repeats. They occur in the arm
region of the Clathrin heavy chain.
Length = 143
Score = 32.6 bits (75), Expect = 0.007
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 36 ATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIV--NYSQDQEVHFKYI 82
+ + + ++ LFE E L +L S + N ++ + +
Sbjct: 1 LIELTDPIDISRVVKLFEKRGLLEELIPYLESALKENSRENPALQTALL 49
>gnl|CDD|199863 cd06239, M14-like_1_2, Peptidase M14-like domain; uncharacterized
subgroup. Peptidase M14-like domain of a functionally
uncharacterized subgroup of the M14 family of
metallocarboxypeptidases (MCPs). The M14 family are
zinc-binding carboxypeptidases (CPs) which hydrolyze
single, C-terminal amino acids from polypeptide chains,
and have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. Two major subfamilies of the M14 family,
defined based on sequence and structural homology, are
the A/B and N/E subfamilies. Enzymes belonging to the
A/B subfamily are normally synthesized as inactive
precursors containing preceding signal peptide,
followed by an N-terminal pro-region linked to the
enzyme; these proenzymes are called
procarboxypeptidases. The A/B enzymes can be further
divided based on their substrate specificity;
Carboxypeptidase A-like (CPA-like) enzymes favor
hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues
lysine or arginine. The A forms have slightly different
specificities, with Carboxypeptidase A1 (CPA1)
preferring aliphatic and small aromatic residues, and
CPA2 preferring the bulky aromatic side chains. Enzymes
belonging to the N/E subfamily enzymes are not produced
as inactive precursors and instead rely on their
substrate specificity and subcellular
compartmentalization to prevent inappropriate cleavage.
They contain an extra C-terminal transthyretin-like
domain, thought to be involved in folding or formation
of oligomers. MCPs can also be classified based on
their involvement in specific physiological processes;
the pancreatic MCPs participate only in alimentary
digestion and include carboxypeptidase A and B (A/B
subfamily), while others, namely regulatory MCPs or the
N/E subfamily, are involved in more selective
reactions, mainly in non-digestive tissues and fluids,
acting on blood coagulation/fibrinolysis, inflammation
and local anaphylaxis, pro-hormone and neuropeptide
processing, cellular response and others. Another MCP
subfamily, is that of succinylglutamate desuccinylase
/aspartoacylase, which hydrolyzes N-acetyl-L-aspartate
(NAA), and deficiency in which is the established cause
of Canavan disease. Another subfamily (referred to as
subfamily C) includes an exceptional type of activity
in the MCP family, that of dipeptidyl-peptidase
activity of gamma-glutamyl-(L)-meso-diaminopimelate
peptidase I which is involved in bacterial cell wall
metabolism.
Length = 231
Score = 29.6 bits (67), Expect = 0.13
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 1 MEVGGKRDRGRPKTRYMHTVFPQDLKEKKLEVSQIATKYH--EQLTTKALIDLFESFKSY 58
+EV G+ GRP +++V K L SQ+ H E TTKAL+DL +
Sbjct: 12 VEVIGQSVEGRP----IYSVKFGTGPRKILLWSQM----HGNESTTTKALLDLLNFLGTN 63
Query: 59 E 59
Sbjct: 64 S 64
>gnl|CDD|182218 PRK10063, PRK10063, putative glycosyl transferase; Provisional.
Length = 248
Score = 25.1 bits (55), Expect = 5.0
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 54 SFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
+F++ EG+ S+ + +QD + F++I
Sbjct: 9 AFRNLEGIVKTHASLRHLAQDPGISFEWI 37
>gnl|CDD|130937 TIGR01882, peptidase-T, peptidase T. This model represents a
tripeptide aminopeptidase known as Peptidase T, which
has a substrate preference for hydrophobic peptides
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 410
Score = 24.1 bits (52), Expect = 9.8
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 20 VFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFL 65
V P K K + +QIA H L D E + EG F+ L
Sbjct: 225 VHPGTAKGKMINAAQIAIDLHNLLPED---DRPEYTEGREGFFHLL 267
>gnl|CDD|218364 pfam04987, PigN, Phosphatidylinositolglycan class N (PIG-N).
Phosphatidylinositolglycan class N (PIG-N) is a
mammalian homologue of the yeast protein MCD4P and is
expressed in the endoplasmic reticulum. PIG-N is
essential for glycosylphosphatidylinositol anchor
synthesis. Glycosylphosphatidylinositol (GPI)-anchored
proteins are cell surface-localised proteins that serve
many important cellular functions.
Length = 441
Score = 24.2 bits (53), Expect = 9.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 57 SYEGLFYFLGSIV 69
SYE LFY S+
Sbjct: 292 SYESLFYQAFSME 304
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.392
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,034,911
Number of extensions: 303996
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 13
Length of query: 82
Length of database: 10,937,602
Length adjustment: 51
Effective length of query: 31
Effective length of database: 8,675,548
Effective search space: 268941988
Effective search space used: 268941988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)