RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10394
         (82 letters)



>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
           endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
           i.23.1.1 PDB: 1xi5_A 3iyv_A
          Length = 1630

 Score = 78.9 bits (194), Expect = 3e-19
 Identities = 39/51 (76%), Positives = 48/51 (94%)

Query: 32  VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct: 682 CVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 28.3 bits (63), Expect = 0.23
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 24  DLKEKK-LEVSQIATKYHEQLTTKALIDLFES--FKSY 58
           D K K+ ++   +  KY   +   + I L E   F  Y
Sbjct: 878 DSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGY 915


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
          programmed cell death; HET: DTP; 6.90A {Drosophila
          melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.3 bits (62), Expect = 0.27
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 3/47 (6%)

Query: 28 KKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIV--NYS 72
           K E+  I         T  L     S K  E +  F+  ++  NY 
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYK 92



 Score = 26.4 bits (57), Expect = 1.4
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 20/60 (33%)

Query: 39  YHEQLTTKALIDLFESFKS-YEGL-FYFL--------------GSIVNYSQDQEVHFKYI 82
           +H  L      +    F+  +  L F FL              GSI+N  Q  + +  YI
Sbjct: 479 HH--LKNIEHPERMTLFRMVF--LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.7 bits (61), Expect = 0.40
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 7    RDRGRPKTRYMHTVFPQDLKEKKLEVSQIA---TKYHEQLTTKALIDLFESFKSYEGLFY 63
              RG      M    P+D +  +     IA    +     + +AL  + E      G  +
Sbjct: 1787 FYRGM----TMQVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG--W 1839

Query: 64   FLGSIVNY 71
             +  IVNY
Sbjct: 1840 LV-EIVNY 1846


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.8 bits (58), Expect = 0.69
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 10/33 (30%)

Query: 23 QDLKEKKLEVSQIATKYHE-----QLTTKALID 50
          Q LK  KL+ S    K +       L  KA ++
Sbjct: 20 QALK--KLQAS---LKLYADDSAPALAIKATME 47


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,165,634
Number of extensions: 51637
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 12
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)