Query psy10395
Match_columns 79
No_of_seqs 135 out of 1538
Neff 11.1
Searched_HMMs 46136
Date Fri Aug 16 16:45:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156|consensus 99.9 1.5E-26 3.3E-31 136.0 8.2 78 2-79 308-386 (489)
2 PLN02971 tryptophan N-hydroxyl 99.9 9.1E-25 2E-29 130.0 8.4 78 2-79 349-427 (543)
3 PLN02394 trans-cinnamate 4-mon 99.9 1.3E-23 2.9E-28 124.0 7.7 78 2-79 315-393 (503)
4 KOG0159|consensus 99.9 6.9E-24 1.5E-28 123.9 6.0 77 1-78 337-415 (519)
5 PTZ00404 cytochrome P450; Prov 99.9 2.6E-23 5.7E-28 122.2 8.4 78 2-79 305-384 (482)
6 PLN03234 cytochrome P450 83B1; 99.9 3E-23 6.4E-28 122.4 8.3 78 2-79 310-388 (499)
7 PLN02183 ferulate 5-hydroxylas 99.9 6E-23 1.3E-27 121.7 8.0 77 2-79 326-403 (516)
8 PLN02500 cytochrome P450 90B1 99.9 5.6E-23 1.2E-27 121.1 7.8 77 2-79 301-383 (490)
9 PLN02290 cytokinin trans-hydro 99.9 6.1E-23 1.3E-27 121.5 7.8 77 2-79 338-414 (516)
10 PLN00110 flavonoid 3',5'-hydro 99.9 1.7E-22 3.6E-27 119.6 8.3 78 2-79 311-389 (504)
11 PLN03112 cytochrome P450 famil 99.9 1.6E-22 3.4E-27 119.7 8.2 78 2-79 318-396 (514)
12 PLN03018 homomethionine N-hydr 99.9 2.1E-22 4.5E-27 119.9 8.5 78 2-79 336-414 (534)
13 PLN00168 Cytochrome P450; Prov 99.9 1.8E-22 3.9E-27 119.7 8.1 78 2-79 328-407 (519)
14 PLN02966 cytochrome P450 83A1 99.9 2.2E-22 4.8E-27 118.9 8.4 78 2-79 311-391 (502)
15 PF00067 p450: Cytochrome P450 99.9 7E-23 1.5E-27 118.1 5.6 78 2-79 284-362 (463)
16 KOG0158|consensus 99.9 2.3E-22 5E-27 118.3 7.5 76 2-78 316-393 (499)
17 PLN02687 flavonoid 3'-monooxyg 99.9 3.5E-22 7.6E-27 118.4 8.3 78 2-79 319-397 (517)
18 PLN02655 ent-kaurene oxidase 99.9 5.4E-22 1.2E-26 116.5 7.7 78 2-79 284-361 (466)
19 PLN02774 brassinosteroid-6-oxi 99.9 1.2E-21 2.7E-26 114.9 8.0 77 2-79 286-366 (463)
20 PLN02738 carotene beta-ring hy 99.9 1.5E-21 3.2E-26 118.0 7.9 77 2-79 413-489 (633)
21 PLN02426 cytochrome P450, fami 99.9 2.8E-21 6.1E-26 114.4 7.5 77 2-79 315-394 (502)
22 KOG0157|consensus 99.9 3.7E-21 8.1E-26 113.8 7.3 77 1-78 312-391 (497)
23 PLN02936 epsilon-ring hydroxyl 99.8 5E-21 1.1E-25 113.0 7.2 78 2-79 300-377 (489)
24 PLN03141 3-epi-6-deoxocathaste 99.8 1.2E-20 2.6E-25 110.5 7.9 77 2-79 273-354 (452)
25 PLN02169 fatty acid (omega-1)- 99.8 1.3E-20 2.9E-25 111.5 7.1 73 2-79 323-395 (500)
26 PLN03195 fatty acid omega-hydr 99.8 1.2E-20 2.6E-25 111.9 6.8 77 2-79 314-412 (516)
27 PLN02196 abscisic acid 8'-hydr 99.8 4E-20 8.6E-25 108.6 7.2 77 2-79 286-366 (463)
28 PLN02302 ent-kaurenoic acid ox 99.8 5.4E-20 1.2E-24 108.3 7.7 77 2-79 309-390 (490)
29 PLN02987 Cytochrome P450, fami 99.8 2.2E-19 4.7E-24 105.9 8.0 77 2-79 289-369 (472)
30 PLN02648 allene oxide synthase 99.8 1.6E-18 3.5E-23 102.4 7.1 76 2-78 294-376 (480)
31 KOG0684|consensus 99.7 2.6E-17 5.7E-22 95.5 6.3 76 2-78 295-376 (486)
32 COG2124 CypX Cytochrome P450 [ 99.5 1.5E-13 3.2E-18 80.3 5.8 61 2-78 258-318 (411)
33 PF05952 ComX: Bacillus compet 88.3 0.31 6.8E-06 21.4 1.1 18 3-20 5-22 (57)
34 PF12508 DUF3714: Protein of u 81.1 1.4 3.1E-05 24.3 1.8 39 39-79 53-91 (200)
35 PF14824 Sirohm_synth_M: Siroh 69.3 6.2 0.00013 15.0 2.3 15 10-24 15-29 (30)
36 TIGR03244 arg_catab_AstA argin 64.3 15 0.00032 22.2 3.3 51 4-54 143-210 (336)
37 PF11138 DUF2911: Protein of u 64.2 5.5 0.00012 20.9 1.4 17 62-78 51-67 (145)
38 cd00642 GTP_cyclohydro1 GTP cy 61.0 15 0.00033 20.2 2.8 22 5-26 108-129 (185)
39 COG0302 FolE GTP cyclohydrolas 60.5 20 0.00043 19.9 3.1 22 5-26 117-138 (195)
40 PLN03044 GTP cyclohydrolase I; 59.5 18 0.00038 20.0 2.9 22 5-26 109-130 (188)
41 PF14483 Cut8_M: Cut8 dimerisa 59.3 12 0.00026 14.9 1.8 12 7-18 23-34 (38)
42 PF07849 DUF1641: Protein of u 59.0 13 0.00028 15.1 2.1 17 2-18 14-30 (42)
43 KOG0736|consensus 57.9 46 0.001 23.0 4.8 38 14-51 650-690 (953)
44 TIGR00063 folE GTP cyclohydrol 57.4 19 0.00042 19.7 2.8 22 5-26 103-124 (180)
45 TIGR03779 Bac_Flav_CT_M Bacter 54.2 10 0.00022 23.5 1.6 16 63-78 278-293 (410)
46 PRK12606 GTP cyclohydrolase I; 52.9 25 0.00055 19.6 2.8 21 5-25 123-143 (201)
47 PRK10456 arginine succinyltran 52.5 17 0.00038 22.0 2.3 52 4-55 145-213 (344)
48 PHA01346 hypothetical protein 51.2 19 0.00042 14.8 1.8 17 10-26 29-46 (53)
49 KOG3348|consensus 50.9 23 0.0005 16.9 2.2 20 6-25 48-67 (85)
50 PRK09347 folE GTP cyclohydrola 50.7 27 0.00058 19.3 2.7 22 5-26 111-132 (188)
51 PF11998 DUF3493: Protein of u 49.7 20 0.00043 16.7 1.8 16 9-24 1-16 (75)
52 KOG0739|consensus 49.4 60 0.0013 19.9 4.6 38 14-51 112-151 (439)
53 PF02084 Bindin: Bindin; Inte 49.1 45 0.00098 19.1 3.4 40 14-54 102-142 (238)
54 TIGR01260 ATP_synt_c ATP synth 49.0 25 0.00054 15.4 2.1 17 4-20 17-33 (58)
55 PF15300 INT_SG_DDX_CT_C: INTS 48.8 24 0.00052 16.0 2.0 16 37-52 39-54 (65)
56 PRK13989 cell division topolog 47.2 20 0.00044 17.0 1.7 16 11-26 37-52 (84)
57 PF01227 GTP_cyclohydroI: GTP 44.8 17 0.00036 19.9 1.4 21 5-25 103-123 (179)
58 PTZ00484 GTP cyclohydrolase I; 43.8 42 0.00092 19.6 2.9 21 6-26 183-203 (259)
59 PRK13467 F0F1 ATP synthase sub 43.5 35 0.00075 15.5 2.8 17 4-20 27-43 (66)
60 COG3138 AstA Arginine/ornithin 43.2 24 0.00052 21.1 1.9 51 4-54 145-212 (336)
61 PRK13990 cell division topolog 43.1 38 0.00082 16.4 2.3 18 10-27 41-58 (90)
62 KOG4634|consensus 42.5 41 0.00089 16.6 2.3 15 10-24 58-72 (105)
63 PRK13987 cell division topolog 42.2 32 0.00069 16.7 2.0 18 10-27 33-50 (91)
64 PRK13466 F0F1 ATP synthase sub 41.6 38 0.00082 15.4 2.6 17 4-20 27-43 (66)
65 PRK07558 F0F1 ATP synthase sub 41.5 38 0.00082 15.7 2.1 15 5-19 34-48 (74)
66 PRK13991 cell division topolog 40.2 46 0.001 16.0 2.4 18 10-27 35-52 (87)
67 PRK03636 hypothetical protein; 40.0 26 0.00057 19.2 1.6 17 2-18 28-44 (179)
68 PHA00672 hypothetical protein 39.7 24 0.00052 18.3 1.4 18 61-78 41-58 (152)
69 TIGR03245 arg_AOST_alph argini 39.4 12 0.00026 22.6 0.4 51 4-54 144-211 (336)
70 PF12465 Pr_beta_C: Proteasome 39.3 13 0.00029 14.8 0.4 11 69-79 8-18 (38)
71 PRK13988 cell division topolog 39.3 32 0.00068 16.9 1.7 18 10-27 37-54 (97)
72 PRK11409 antitoxin YefM; Provi 38.8 47 0.001 15.6 2.9 21 5-25 52-72 (83)
73 TIGR03243 arg_catab_AOST argin 38.5 13 0.00028 22.4 0.4 51 4-54 143-210 (335)
74 PRK06876 F0F1 ATP synthase sub 37.1 50 0.0011 15.5 2.8 17 4-20 35-51 (78)
75 PRK03057 hypothetical protein; 36.7 28 0.0006 19.1 1.4 17 2-18 26-42 (180)
76 PF10777 YlaC: Inner membrane 36.2 14 0.00031 19.6 0.3 30 3-32 114-144 (155)
77 PF13656 RNA_pol_L_2: RNA poly 36.2 31 0.00067 16.0 1.4 12 64-75 25-36 (77)
78 COG0851 MinE Septum formation 36.0 37 0.0008 16.4 1.6 18 10-27 35-52 (88)
79 cd07922 CarBa CarBa is the A s 35.1 56 0.0012 15.5 2.7 25 3-27 9-33 (81)
80 PRK05880 F0F1 ATP synthase sub 35.1 56 0.0012 15.5 2.7 17 4-20 36-52 (81)
81 PF08285 DPM3: Dolichol-phosph 33.4 64 0.0014 15.6 2.3 16 10-25 66-81 (91)
82 PF14550 Peptidase_U35_2: Puta 33.3 24 0.00051 18.1 0.8 17 62-78 72-88 (122)
83 PF13040 DUF3901: Protein of u 32.7 44 0.00096 13.6 2.7 18 6-23 18-35 (40)
84 PF09521 RE_NgoPII: NgoPII res 32.6 1.1E+02 0.0024 18.0 4.4 26 2-27 144-171 (263)
85 PLN02531 GTP cyclohydrolase I 32.5 74 0.0016 20.4 2.9 21 5-25 387-407 (469)
86 PRK07874 F0F1 ATP synthase sub 32.3 64 0.0014 15.3 2.2 17 4-20 42-58 (80)
87 PF05542 DUF760: Protein of un 31.4 67 0.0014 15.2 2.5 18 10-27 23-40 (86)
88 MTH00222 ATP9 ATP synthase F0 30.9 67 0.0015 15.1 2.7 17 4-20 35-51 (77)
89 TIGR01215 minE cell division t 30.2 70 0.0015 15.0 2.4 18 10-27 34-51 (81)
90 cd07027 RNAP_RPB11_like RPB11 29.6 37 0.00081 16.0 1.1 10 66-75 35-44 (83)
91 PF08557 Lipid_DES: Sphingolip 29.6 45 0.00097 13.5 1.1 7 7-13 23-29 (39)
92 smart00766 DnaG_DnaB_bind DNA 28.3 58 0.0013 15.4 1.7 17 3-19 4-20 (125)
93 PF03592 Terminase_2: Terminas 27.9 95 0.0021 15.9 2.5 19 5-23 37-55 (144)
94 cd06927 RNAP_L L subunit of Ar 27.9 41 0.0009 15.8 1.1 11 65-75 34-44 (83)
95 cd07029 RNAP_I_III_AC19 AC19 s 27.5 37 0.0008 16.1 0.9 10 66-75 35-44 (85)
96 PRK01146 DNA-directed RNA poly 27.3 43 0.00092 15.9 1.1 10 66-75 37-46 (85)
97 PRK13464 F0F1 ATP synthase sub 27.0 94 0.002 15.5 2.7 18 4-21 42-59 (101)
98 KOG3438|consensus 26.5 38 0.00083 16.8 0.8 13 64-76 40-52 (105)
99 PF05511 ATP-synt_F6: Mitochon 23.8 34 0.00073 16.9 0.4 13 11-23 64-76 (99)
100 COG1862 YajC Preprotein transl 22.9 1.1E+02 0.0025 15.0 3.1 24 2-25 20-44 (97)
101 PRK01642 cls cardiolipin synth 22.4 1.5E+02 0.0032 18.9 3.0 45 9-53 435-480 (483)
102 cd04927 ACT_ACR-like_2 Second 22.1 98 0.0021 14.0 2.5 18 10-27 56-73 (76)
103 PF13043 DUF3903: Domain of un 22.0 75 0.0016 12.6 2.0 14 14-27 10-23 (40)
104 PHA02677 hypothetical protein; 21.1 1.3E+02 0.0028 15.1 2.1 15 10-24 19-33 (108)
105 PRK00296 minE cell division to 20.9 1.2E+02 0.0026 14.5 2.4 18 10-27 35-52 (86)
106 PF09032 Siah-Interact_N: Siah 20.8 94 0.002 14.7 1.5 21 4-24 18-38 (79)
107 PRK06524 biotin carboxylase-li 20.7 98 0.0021 20.0 2.0 15 5-19 88-102 (493)
108 KOG3451|consensus 20.4 1E+02 0.0022 14.2 1.5 22 6-27 42-63 (71)
109 PF10965 DUF2767: Protein of u 20.2 98 0.0021 14.3 1.4 18 10-27 3-20 (69)
No 1
>KOG0156|consensus
Probab=99.94 E-value=1.5e-26 Score=136.02 Aligned_cols=78 Identities=29% Similarity=0.272 Sum_probs=74.8
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++.+|+.||++|+|+++||++++|. +.++.+|..++||++|+++|++|++|++|+.++|.+.+|+.++||.|||||.
T Consensus 308 Wa~a~Ll~~Pev~~K~qeEId~vvG~~r~v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~ 386 (489)
T KOG0156|consen 308 WAMAELLNNPEVQKKLQEEIDEVVGKGRLVSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTT 386 (489)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhCCCCCCChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCE
Confidence 78899999999999999999999999 6689999999999999999999999999998999999999999999999984
No 2
>PLN02971 tryptophan N-hydroxylase
Probab=99.92 E-value=9.1e-25 Score=129.99 Aligned_cols=78 Identities=27% Similarity=0.342 Sum_probs=73.8
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+|+++||++++|. +.+++++..++||++++++|++|++|+++..++|.+.+|..++||.|||||.
T Consensus 349 ~~l~~La~~Pevq~kl~~EI~~v~g~~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~ 427 (543)
T PLN02971 349 WAMAEMINKPEILHKAMEEIDRVVGKERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQ 427 (543)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCE
Confidence 68899999999999999999999998 7789999999999999999999999999987889999999999999999984
No 3
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.90 E-value=1.3e-23 Score=123.96 Aligned_cols=78 Identities=29% Similarity=0.321 Sum_probs=72.3
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|++||++|+|+++|+++++|. +.+++++..++||+++|++|++|++|+++...+|.+.+|..++||.||+||.
T Consensus 315 ~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~ 393 (503)
T PLN02394 315 WGIAELVNHPEIQKKLRDELDTVLGPGNQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESK 393 (503)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCE
Confidence 67899999999999999999999987 6678888999999999999999999999987789989999999999999983
No 4
>KOG0159|consensus
Probab=99.90 E-value=6.9e-24 Score=123.92 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=71.5
Q ss_pred CHHHHHHHhCHHHHHHHHHHHHHhhCC--CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCC
Q psy10395 1 MTKILALKLHWIECLDNYKCLDSYKGT--RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKG 78 (79)
Q Consensus 1 ~~~~~~l~~~p~~~~~~~~ei~~~~g~--~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt 78 (79)
+|.+|+|++||++|+++++|+.+++.. ..++.++..++||+.||+||++|++|+++. ..|...+|.+++||.|||||
T Consensus 337 ~~~Ly~LarnP~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~-~~R~l~~D~vL~gY~vPagT 415 (519)
T KOG0159|consen 337 LWALYELARNPEVQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKETLRLYPVVPG-NGRVLPKDLVLSGYHVPAGT 415 (519)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHhhhceeccccc-cccccchhceeccceecCCC
Confidence 378899999999999999999999876 556778889999999999999999999997 78999999999999999999
No 5
>PTZ00404 cytochrome P450; Provisional
Probab=99.90 E-value=2.6e-23 Score=122.22 Aligned_cols=78 Identities=26% Similarity=0.307 Sum_probs=72.6
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeee-cceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTF-YNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~-~g~~ip~gt~ 79 (79)
|++++|++||++|+|+++|++++++. ..+++++..++||++++++|++|++|+++..++|.+.+|+.+ +||.|||||.
T Consensus 305 ~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~ 384 (482)
T PTZ00404 305 WMVLMLCNYPEIQEKAYNEIKSTVNGRNKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQ 384 (482)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCE
Confidence 67889999999999999999999987 777889999999999999999999999997678999999999 9999999983
No 6
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.90 E-value=3e-23 Score=122.41 Aligned_cols=78 Identities=23% Similarity=0.190 Sum_probs=72.7
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+++++|+++++|+ ..+++++..++||++++++|++|++|+++..++|.+.+|..++||.|||||.
T Consensus 310 ~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~ 388 (499)
T PLN03234 310 WAMTYLIKYPEAMKKAQDEVRNVIGDKGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTI 388 (499)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCE
Confidence 67899999999999999999999988 7788999999999999999999999999976689999999999999999984
No 7
>PLN02183 ferulate 5-hydroxylase
Probab=99.89 E-value=6e-23 Score=121.65 Aligned_cols=77 Identities=25% Similarity=0.342 Sum_probs=71.6
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+|+++|+++++|. +.+++++..+++|++++++|++|++|++|. ..|.+.+|++++||.|||||.
T Consensus 326 ~~l~~La~~Pevq~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~-~~r~~~~d~~l~g~~IPkGt~ 403 (516)
T PLN02183 326 WAMAELMKSPEDLKRVQQELADVVGLNRRVEESDLEKLTYLKCTLKETLRLHPPIPL-LLHETAEDAEVAGYFIPKRSR 403 (516)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHhccChHHHHHHHHHhccCCCccc-eeeeccCceeECCEEECCCCE
Confidence 67899999999999999999999987 667889999999999999999999999997 568899999999999999984
No 8
>PLN02500 cytochrome P450 90B1
Probab=99.89 E-value=5.6e-23 Score=121.11 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=69.9
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhC-----C-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKG-----T-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIP 75 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g-----~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip 75 (79)
|++++|+.||++|+|+++|++++.+ . ..+++++..++||++++++|++|++|+++. ++|.+.+|++++||.||
T Consensus 301 ~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~d~~~lpyl~avikEtlRl~P~~~~-~~R~~~~d~~~~G~~IP 379 (490)
T PLN02500 301 LAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWEDYKKMEFTQCVINETLRLGNVVRF-LHRKALKDVRYKGYDIP 379 (490)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHHHhccCHHHHHHHHHHHhcCCCccC-eeeEeCCCceeCCEEEC
Confidence 6789999999999999999999863 2 356889999999999999999999999997 68999999999999999
Q ss_pred CCCC
Q psy10395 76 KKGK 79 (79)
Q Consensus 76 ~gt~ 79 (79)
|||.
T Consensus 380 kGt~ 383 (490)
T PLN02500 380 SGWK 383 (490)
T ss_pred CCCE
Confidence 9983
No 9
>PLN02290 cytokinin trans-hydroxylase
Probab=99.89 E-value=6.1e-23 Score=121.52 Aligned_cols=77 Identities=21% Similarity=0.171 Sum_probs=71.4
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCCCCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+|+++|+++++|...+++++..++||++++++|++|++|+++. ++|.+.+|+.++||.|||||.
T Consensus 338 ~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~l~~lpYl~avi~EtlRl~p~~~~-~~R~~~~d~~i~g~~IP~Gt~ 414 (516)
T PLN02290 338 WTLMLLASNPTWQDKVRAEVAEVCGGETPSVDHLSKLTLLNMVINESLRLYPPATL-LPRMAFEDIKLGDLHIPKGLS 414 (516)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhCCCCCCHHHHhcChHHHHHHHHHHHcCCCccc-cceeecCCeeECCEEECCCCE
Confidence 67899999999999999999999987557888999999999999999999999996 799999999999999999983
No 10
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.88 E-value=1.7e-22 Score=119.58 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=73.2
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+|+++|+++++|. ..+++++..++||++++++|++|++|+++..++|.+.+|+.++||.|||||.
T Consensus 311 ~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~ 389 (504)
T PLN00110 311 WSLAEMLKNPSILKRAHEEMDQVIGRNRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTR 389 (504)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCE
Confidence 67899999999999999999999987 7788999999999999999999999999977889999999999999999983
No 11
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.88 E-value=1.6e-22 Score=119.71 Aligned_cols=78 Identities=27% Similarity=0.351 Sum_probs=73.0
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+++++|+++++|. +.++++++.++||++++++|++|++|+++..++|.+.+|..++||.|||||.
T Consensus 318 ~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~ 396 (514)
T PLN03112 318 WAMAEVIKNPRVLRKIQEELDSVVGRNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTR 396 (514)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhcCCCCcCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCE
Confidence 67899999999999999999999988 7788999999999999999999999999976789999999999999999983
No 12
>PLN03018 homomethionine N-hydroxylase
Probab=99.88 E-value=2.1e-22 Score=119.90 Aligned_cols=78 Identities=31% Similarity=0.339 Sum_probs=72.6
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+++++||+++++. ..++.++..++||++++++|++|++|+++...+|.+.+|+.++||.|||||.
T Consensus 336 ~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~ 414 (534)
T PLN03018 336 WTLGEMLKNPEILRKALKELDEVVGKDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSH 414 (534)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCE
Confidence 67899999999999999999999987 7788899999999999999999999999975679999999999999999983
No 13
>PLN00168 Cytochrome P450; Provisional
Probab=99.88 E-value=1.8e-22 Score=119.70 Aligned_cols=78 Identities=24% Similarity=0.238 Sum_probs=72.1
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC--CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT--RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~--~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+|+++||++++|. +.++++++.++||++++++|++|++|+++..++|.+.+|++++||.|||||.
T Consensus 328 ~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~ 407 (519)
T PLN00168 328 WIMAELVKNPSIQSKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGAT 407 (519)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCE
Confidence 67899999999999999999999985 4578889999999999999999999999876789999999999999999984
No 14
>PLN02966 cytochrome P450 83A1
Probab=99.88 E-value=2.2e-22 Score=118.90 Aligned_cols=78 Identities=22% Similarity=0.271 Sum_probs=71.4
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC---CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT---RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKG 78 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~---~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt 78 (79)
|++++|++||++|+|+++|++++++. ..+++++..++||++++++|++|++|+++..++|.+.+|+.++||.|||||
T Consensus 311 ~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt 390 (502)
T PLN02966 311 WGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGT 390 (502)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhcccCCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCC
Confidence 67899999999999999999999874 246888999999999999999999999997678999999999999999998
Q ss_pred C
Q psy10395 79 K 79 (79)
Q Consensus 79 ~ 79 (79)
.
T Consensus 391 ~ 391 (502)
T PLN02966 391 T 391 (502)
T ss_pred E
Confidence 3
No 15
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.88 E-value=7e-23 Score=118.09 Aligned_cols=78 Identities=32% Similarity=0.368 Sum_probs=72.6
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+++++|++++.+. ..++.+++.++||++++++|++|++|+++..++|.+.+|++++||.|||||.
T Consensus 284 ~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~ 362 (463)
T PF00067_consen 284 WTLYELAKNPEVQEKLREEIDSVLGDGREITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTI 362 (463)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHTTTSSSHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67899999999999999999999977 6678889999999999999999999999966889999999999999999983
No 16
>KOG0158|consensus
Probab=99.88 E-value=2.3e-22 Score=118.28 Aligned_cols=76 Identities=21% Similarity=0.230 Sum_probs=71.2
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeec-ceeeCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFY-NYFIPKKG 78 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~-g~~ip~gt 78 (79)
.++|+||+||++|+|+++||+++..+ ..++++.+.+|+|+++|++|++|+||+++. +.|.+.+|..+. ++.||||+
T Consensus 316 f~lYeLA~~PdvQ~kLreEI~~~~~~~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~-~~R~C~k~~~i~~~~~i~kG~ 393 (499)
T KOG0158|consen 316 FALYELAKNPDVQDKLREEIDEVLEEKEGLTYDSLSKLKYLDMVIKETLRLYPPAPF-LNRECTKDYEIPGGFVIPKGT 393 (499)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHhcccCCCCHHHHhCCcHHHHHHHHHHhhCCCccc-ccceecCceecCCCeEeCCCC
Confidence 45789999999999999999999776 559999999999999999999999999998 889999999999 99999997
No 17
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.88 E-value=3.5e-22 Score=118.44 Aligned_cols=78 Identities=32% Similarity=0.371 Sum_probs=73.0
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+++++|++++++. ..+++++..++||++++++|++|++|+++..++|.+.+|+.++||.||+||.
T Consensus 319 ~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~ 397 (517)
T PLN02687 319 WAIAELIRHPDILKKAQEELDAVVGRDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGAT 397 (517)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCE
Confidence 67899999999999999999999987 7788899999999999999999999999977789999999999999999984
No 18
>PLN02655 ent-kaurene oxidase
Probab=99.87 E-value=5.4e-22 Score=116.46 Aligned_cols=78 Identities=27% Similarity=0.285 Sum_probs=71.9
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCCCCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+++++|+++++|...++++++.++||++++++|++|++|+++...+|.+.+|+.++||.|||||.
T Consensus 284 ~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~ 361 (466)
T PLN02655 284 WAMYELAKNPDKQERLYREIREVCGDERVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQ 361 (466)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhCCCCCCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCE
Confidence 678999999999999999999999883388899999999999999999999999986689999999999999999984
No 19
>PLN02774 brassinosteroid-6-oxidase
Probab=99.87 E-value=1.2e-21 Score=114.88 Aligned_cols=77 Identities=22% Similarity=0.197 Sum_probs=69.7
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC----CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT----RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKK 77 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~----~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~g 77 (79)
|++++|+.||++|+++++|++++.+. ..++++++.++||++++++|++|++|+++. +.|.+.+|++++||.||||
T Consensus 286 w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a~ikE~lRl~P~v~~-~~R~~~~d~~l~g~~IpkG 364 (463)
T PLN02774 286 MAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETSRLATIVNG-VLRKTTQDMELNGYVIPKG 364 (463)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHHHHHHHHhcCCCCCC-cccccCCCeeECCEEECCC
Confidence 67889999999999999999999863 346788999999999999999999999985 6799999999999999999
Q ss_pred CC
Q psy10395 78 GK 79 (79)
Q Consensus 78 t~ 79 (79)
|.
T Consensus 365 t~ 366 (463)
T PLN02774 365 WR 366 (463)
T ss_pred CE
Confidence 83
No 20
>PLN02738 carotene beta-ring hydroxylase
Probab=99.86 E-value=1.5e-21 Score=118.04 Aligned_cols=77 Identities=26% Similarity=0.295 Sum_probs=70.4
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCCCCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+|+++|++++++...++++++.++||++++++|++|++|+++. +.|.+.+|..++||.||+||.
T Consensus 413 ~~l~~L~~~Pevq~kLreEl~~v~~~~~~t~edL~kLPYL~AVIkEtLRL~p~~p~-~~R~a~~d~~i~gy~IPkGT~ 489 (633)
T PLN02738 413 WTFYLLSKEPSVVAKLQEEVDSVLGDRFPTIEDMKKLKYTTRVINESLRLYPQPPV-LIRRSLENDMLGGYPIKRGED 489 (633)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCCCCHHHHccCHHHHHHHHHHHhcCCCccc-cceeeccCceECCEEECCCCE
Confidence 67899999999999999999999886556889999999999999999999999997 568888999999999999983
No 21
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.85 E-value=2.8e-21 Score=114.44 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=68.7
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC--CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeee-cceeeCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT--RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTF-YNYFIPKKG 78 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~--~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~-~g~~ip~gt 78 (79)
|++++|++||++|+|+++|++++.|. ..+++++..++||++++++|++|++|+++. ..|.+.+|..+ +|+.|||||
T Consensus 315 ~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~t~~~l~~LpYl~avi~EtLRl~p~v~~-~~r~~~~d~~~~~G~~Ip~Gt 393 (502)
T PLN02426 315 SFFWLLSKHPEVASAIREEADRVMGPNQEAASFEEMKEMHYLHAALYESMRLFPPVQF-DSKFAAEDDVLPDGTFVAKGT 393 (502)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhhCCCCCCCCHHHHhcChHHHHHHHHHHhCCCCCCC-cceeeccCCCcCCCcEECCCC
Confidence 67899999999999999999999886 367899999999999999999999999997 45877777666 899999998
Q ss_pred C
Q psy10395 79 K 79 (79)
Q Consensus 79 ~ 79 (79)
.
T Consensus 394 ~ 394 (502)
T PLN02426 394 R 394 (502)
T ss_pred E
Confidence 3
No 22
>KOG0157|consensus
Probab=99.85 E-value=3.7e-21 Score=113.85 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=66.0
Q ss_pred CHHHHHHHhCHHHHHHHHHHHHHhhCC-CCC-CcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeec-ceeeCCC
Q psy10395 1 MTKILALKLHWIECLDNYKCLDSYKGT-RRP-SLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFY-NYFIPKK 77 (79)
Q Consensus 1 ~~~~~~l~~~p~~~~~~~~ei~~~~g~-~~~-~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~-g~~ip~g 77 (79)
.|+++.|+.||++|+++++|+.+++|+ ... ......+|+|+++|++|++|++|++|. ..|.+.+|..+. ||.||||
T Consensus 312 tw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~~~~~~~~m~yl~~vi~EsLRLyppvp~-~~R~~~~d~~l~~g~~IPkG 390 (497)
T KOG0157|consen 312 TWTLWLLAKHPEVQEKLREEVDEILGNRDDKWEVEKLDQMKYLEMVIKESLRLYPPVPL-VARKATKDVKLPGGYTIPKG 390 (497)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCCChhhhhhhHHHHHHHHHHhccCCCCch-hhcccCCCeEcCCCcEeCCC
Confidence 378899999999999999999999986 322 222222599999999999999999997 889999999995 8999999
Q ss_pred C
Q psy10395 78 G 78 (79)
Q Consensus 78 t 78 (79)
+
T Consensus 391 ~ 391 (497)
T KOG0157|consen 391 T 391 (497)
T ss_pred C
Confidence 7
No 23
>PLN02936 epsilon-ring hydroxylase
Probab=99.85 E-value=5e-21 Score=113.02 Aligned_cols=78 Identities=22% Similarity=0.179 Sum_probs=69.9
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCCCCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
+++++|+.||++|+++++|++++++...+++++..++||++++++|++|++|+++...+|.+..|+.++||.||+||.
T Consensus 300 ~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~ 377 (489)
T PLN02936 300 WTLYLLSKNPEALRKAQEELDRVLQGRPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQD 377 (489)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhcCCCCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCE
Confidence 578999999999999999999998874467888999999999999999999999987777778888889999999984
No 24
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.84 E-value=1.2e-20 Score=110.50 Aligned_cols=77 Identities=21% Similarity=0.149 Sum_probs=68.4
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhC----C-CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKG----T-RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g----~-~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~ 76 (79)
|++++|+.||++|+++++|++++++ . ..++.++..++||++++++|++|++|+++. ++|.+.+|++++||.|||
T Consensus 273 ~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~-~~R~~~~d~~l~g~~IPk 351 (452)
T PLN03141 273 LAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDYMSLPFTQNVITETLRMGNIING-VMRKAMKDVEIKGYLIPK 351 (452)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHHhccHHHHHHHHHHHhccCCcCC-cceeecCCeeECCEEECC
Confidence 6788999999999999999988753 2 346778889999999999999999999884 789999999999999999
Q ss_pred CCC
Q psy10395 77 KGK 79 (79)
Q Consensus 77 gt~ 79 (79)
||.
T Consensus 352 G~~ 354 (452)
T PLN03141 352 GWC 354 (452)
T ss_pred CCE
Confidence 983
No 25
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.84 E-value=1.3e-20 Score=111.50 Aligned_cols=73 Identities=18% Similarity=0.066 Sum_probs=61.7
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCCCCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
|++++|+.||++|+|+++|+++++ +++++.++||++++++|++|++|++|...++.+..+..++|+.|||||.
T Consensus 323 w~l~~La~~Pevq~kl~~Ei~~v~-----~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~IpkGt~ 395 (500)
T PLN02169 323 WFFWLLSKHPQVMAKIRHEINTKF-----DNEDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESK 395 (500)
T ss_pred HHHHHHHCCHHHHHHHHHHHHhhC-----CHHHHhcCHHHHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECCCCE
Confidence 678999999999999999999875 3578899999999999999999999974434444445568999999983
No 26
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.83 E-value=1.2e-20 Score=111.87 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=64.3
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC---------------------CCCCcccccCCHHHHHHHHHHhcccCCCCcCCc
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT---------------------RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAP 60 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~---------------------~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~ 60 (79)
|++++|+.||++|+|+++|++++++. ..++++++.++||++++++|++|++|+++.. .
T Consensus 314 ~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~-~ 392 (516)
T PLN03195 314 WFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQD-P 392 (516)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhhhcccccccccccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcch-h
Confidence 67899999999999999999987531 2367888999999999999999999999974 4
Q ss_pred cccCCC-eeecceeeCCCCC
Q psy10395 61 HRCTED-TTFYNYFIPKKGK 79 (79)
Q Consensus 61 ~~~~~~-~~~~g~~ip~gt~ 79 (79)
|.+.+| ..++|+.|||||.
T Consensus 393 r~~~~d~~~~~G~~IpkGt~ 412 (516)
T PLN03195 393 KGILEDDVLPDGTKVKAGGM 412 (516)
T ss_pred hhhccCcCcCCCcEECCCCE
Confidence 545555 4458999999984
No 27
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.82 E-value=4e-20 Score=108.63 Aligned_cols=77 Identities=19% Similarity=0.171 Sum_probs=68.9
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC----CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT----RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKK 77 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~----~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~g 77 (79)
|++++|+.||++|+++++|++++.+. ..+++++..+++|++++++|++|++|+++. ..|.+.+|+.++||.||||
T Consensus 286 ~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~avi~EtlRl~p~~~~-~~R~~~~d~~i~g~~IpkG 364 (463)
T PLN02196 286 WILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSF-TFREAVEDVEYEGYLIPKG 364 (463)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHHHHHHHHHHhcCCCccc-cceeeccccccCCEEeCCC
Confidence 67889999999999999999998763 346788889999999999999999999987 4588899999999999999
Q ss_pred CC
Q psy10395 78 GK 79 (79)
Q Consensus 78 t~ 79 (79)
|.
T Consensus 365 t~ 366 (463)
T PLN02196 365 WK 366 (463)
T ss_pred CE
Confidence 84
No 28
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.82 E-value=5.4e-20 Score=108.33 Aligned_cols=77 Identities=21% Similarity=0.193 Sum_probs=68.8
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-C----CCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-R----RPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~----~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~ 76 (79)
|++++|+.||++|+|+++|++++++. . ..+++++.++||++++++|++|++|+++. ..|.+.+|+.++||.|||
T Consensus 309 ~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~-~~R~~~~d~~~~g~~Ip~ 387 (490)
T PLN02302 309 WATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVIDETLRLINISLT-VFREAKTDVEVNGYTIPK 387 (490)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcChHHHHHHHHHHHhCCCccc-chhcccCCEeECCEEECC
Confidence 57889999999999999999999864 2 25778899999999999999999999986 578889999999999999
Q ss_pred CCC
Q psy10395 77 KGK 79 (79)
Q Consensus 77 gt~ 79 (79)
||.
T Consensus 388 Gt~ 390 (490)
T PLN02302 388 GWK 390 (490)
T ss_pred CCE
Confidence 983
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.81 E-value=2.2e-19 Score=105.86 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=68.7
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC----CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT----RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKK 77 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~----~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~g 77 (79)
|++++|+.||++|+++++|++++.+. ..+++++..++||++++++|++|++|+++. ++|.+.+|+.++||.||||
T Consensus 289 ~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~EtLRl~p~~~~-~~R~~~~d~~~~G~~ip~G 367 (472)
T PLN02987 289 LAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRVANIIGG-IFRRAMTDIEVKGYTIPKG 367 (472)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCCHHHHhcChHHHHHHHHHHHccCCcCC-ccccCCCCeeECCEEECCC
Confidence 67889999999999999999998752 346778889999999999999999999885 6799999999999999999
Q ss_pred CC
Q psy10395 78 GK 79 (79)
Q Consensus 78 t~ 79 (79)
|.
T Consensus 368 t~ 369 (472)
T PLN02987 368 WK 369 (472)
T ss_pred CE
Confidence 83
No 30
>PLN02648 allene oxide synthase
Probab=99.77 E-value=1.6e-18 Score=102.43 Aligned_cols=76 Identities=14% Similarity=0.043 Sum_probs=67.4
Q ss_pred HHHHHHHhCHH-HHHHHHHHHHHhhCC--CCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeec----ceee
Q psy10395 2 TKILALKLHWI-ECLDNYKCLDSYKGT--RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFY----NYFI 74 (79)
Q Consensus 2 ~~~~~l~~~p~-~~~~~~~ei~~~~g~--~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~----g~~i 74 (79)
+++++|++||+ +|+++++|++.+++. ..++++++.+++|++++++|++|++|+++. ..|.+.+|+++. ||.|
T Consensus 294 ~~l~~L~~~p~~v~~klr~Ei~~~~~~~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~-~~r~a~~d~~l~~~~~g~~I 372 (480)
T PLN02648 294 ALLKWVGRAGEELQARLAEEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPF-QYGRAREDFVIESHDAAFEI 372 (480)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCCCHHHHhcCHHHHHHHHHHHhhcCCccc-ccceecCCEEEecCCceEEE
Confidence 47889999995 999999999999874 457888999999999999999999999997 557788999896 7999
Q ss_pred CCCC
Q psy10395 75 PKKG 78 (79)
Q Consensus 75 p~gt 78 (79)
|||+
T Consensus 373 pkG~ 376 (480)
T PLN02648 373 KKGE 376 (480)
T ss_pred CCCC
Confidence 9997
No 31
>KOG0684|consensus
Probab=99.72 E-value=2.6e-17 Score=95.55 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=69.7
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCC-C-CCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecc----eeeC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGT-R-RPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYN----YFIP 75 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~-~-~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g----~~ip 75 (79)
|.+++|++||++++.+++|+.+++|+ . ..+.+.++.+|.++.|++|++|++++.+. +.|.+.+|..+.+ |.||
T Consensus 295 W~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~~-~~R~v~~D~tv~~~~~~Y~Ip 373 (486)
T KOG0684|consen 295 WTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCIKETLRLHPPAHS-LMRKVHEDLTVPGSDGEYVIP 373 (486)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHHHHHHhcCCchhh-HHHhhccceeeccCCcceecC
Confidence 77889999999999999999999998 4 47889999999999999999999998885 7799999998877 9999
Q ss_pred CCC
Q psy10395 76 KKG 78 (79)
Q Consensus 76 ~gt 78 (79)
+|.
T Consensus 374 ~G~ 376 (486)
T KOG0684|consen 374 KGD 376 (486)
T ss_pred CCC
Confidence 995
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.47 E-value=1.5e-13 Score=80.31 Aligned_cols=61 Identities=26% Similarity=0.235 Sum_probs=55.8
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhhCCCCCCcccccCCHHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCC
Q psy10395 2 TKILALKLHWIECLDNYKCLDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKG 78 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt 78 (79)
|.++.|++||++++++++|.+. +|+.++++|++|++|+++. +.|.+.+|++++|+.||||+
T Consensus 258 ~a~~~L~~~P~~~~~l~~e~~~---------------~~~~~~v~E~LR~~ppv~~-~~R~~~~d~~igg~~Ip~G~ 318 (411)
T COG2124 258 WALYALLRHPDQLAKLRAEPDR---------------PLLEAVVEETLRLYPPVPL-ARRVATEDVELGGYRIPAGT 318 (411)
T ss_pred HHHHHHHHCchHHHHHHhCcch---------------HHHHHHHHHHHHhCCchhc-cceeccCCEeeCCEEeCCCC
Confidence 6789999999999999987542 7888999999999999998 89999999999999999997
No 33
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=88.34 E-value=0.31 Score=21.37 Aligned_cols=18 Identities=6% Similarity=-0.396 Sum_probs=15.0
Q ss_pred HHHHHHhCHHHHHHHHHH
Q psy10395 3 KILALKLHWIECLDNYKC 20 (79)
Q Consensus 3 ~~~~l~~~p~~~~~~~~e 20 (79)
.+.+|..||++.+++.+.
T Consensus 5 iV~YLv~nPevl~kl~~g 22 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEG 22 (57)
T ss_pred HHHHHHHChHHHHHHHcC
Confidence 467999999999998763
No 34
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=81.15 E-value=1.4 Score=24.32 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcccCCCCcCCccccCCCeeecceeeCCCCC
Q psy10395 39 DYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79 (79)
Q Consensus 39 ~~~~~~~~e~~r~~~~~~~~~~~~~~~~~~~~g~~ip~gt~ 79 (79)
..+.||+.|.+....-.- +.-...+|+.++|..|||||.
T Consensus 53 n~I~A~V~~~qtv~~Gs~--vrlRLle~i~i~g~~IPkgt~ 91 (200)
T PF12508_consen 53 NTIRAVVDGTQTVVDGSR--VRLRLLEDIQIGGILIPKGTY 91 (200)
T ss_pred CeEEEEEecceEEeCCCE--EEEEEcCceEECCEEeCCCCE
Confidence 445577888776544332 334568889999999999983
No 35
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=69.32 E-value=6.2 Score=14.97 Aligned_cols=15 Identities=7% Similarity=-0.334 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHh
Q psy10395 10 HWIECLDNYKCLDSY 24 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~ 24 (79)
.|.+..++++|+++.
T Consensus 15 sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 15 SPRLARLIRKEIERL 29 (30)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh
Confidence 588888999998764
No 36
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=64.28 E-value=15 Score=22.21 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=34.3
Q ss_pred HHHHHhCHHHH-HHHHHHHHHhhCC--CCCCcccc----cCCHHHH----------HHHHHHhcccCC
Q psy10395 4 ILALKLHWIEC-LDNYKCLDSYKGT--RRPSLEDR----QYLDYAQ----------AVISEVFRINTI 54 (79)
Q Consensus 4 ~~~l~~~p~~~-~~~~~ei~~~~g~--~~~~~~~~----~~~~~~~----------~~~~e~~r~~~~ 54 (79)
+++++.||+.. +++..|++.+... ..|-|+.+ -+|+|.. .++.|.+.-+|+
T Consensus 143 fLFiA~~~erF~~~viAEmrG~~De~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLMP~~PI 210 (336)
T TIGR03244 143 FLFIAQFRERFSKKIIAEMRGVSDEQGRSPFWNALGRHFFSMDFSQADYLSGIGQKAFIAELMPKFPI 210 (336)
T ss_pred HHHHHhhHhhhhhhhhhhhcCccCCCCCCchHHHhhccccCCCHHHHHHHhccCcchhHHHHCCCCCc
Confidence 46889999864 6888999988775 55666654 2444433 467777665665
No 37
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=64.25 E-value=5.5 Score=20.95 Aligned_cols=17 Identities=12% Similarity=0.012 Sum_probs=14.3
Q ss_pred ccCCCeeecceeeCCCC
Q psy10395 62 RCTEDTTFYNYFIPKKG 78 (79)
Q Consensus 62 ~~~~~~~~~g~~ip~gt 78 (79)
...+|+.++|-.||+|+
T Consensus 51 ~f~~dv~igGk~l~AG~ 67 (145)
T PF11138_consen 51 TFSKDVTIGGKKLKAGT 67 (145)
T ss_pred EECCCeEECCEEcCCee
Confidence 45788999999999986
No 38
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=61.00 E-value=15 Score=20.17 Aligned_cols=22 Identities=5% Similarity=-0.337 Sum_probs=17.8
Q ss_pred HHHHhCHHHHHHHHHHHHHhhC
Q psy10395 5 LALKLHWIECLDNYKCLDSYKG 26 (79)
Q Consensus 5 ~~l~~~p~~~~~~~~ei~~~~g 26 (79)
-..++.|++|+++-.+|...+.
T Consensus 108 ~~~arRlQiQERLt~qIa~al~ 129 (185)
T cd00642 108 EFFSRRLQVQERLTKQIAVAIQ 129 (185)
T ss_pred HHHhcCchHHHHHHHHHHHHHH
Confidence 3668899999999998877653
No 39
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=60.51 E-value=20 Score=19.93 Aligned_cols=22 Identities=0% Similarity=-0.348 Sum_probs=17.6
Q ss_pred HHHHhCHHHHHHHHHHHHHhhC
Q psy10395 5 LALKLHWIECLDNYKCLDSYKG 26 (79)
Q Consensus 5 ~~l~~~p~~~~~~~~ei~~~~g 26 (79)
-..++.|++|+++-++|..++-
T Consensus 117 ~~~arR~QvQErlT~qIA~al~ 138 (195)
T COG0302 117 DIFARRLQVQERLTEQIADALQ 138 (195)
T ss_pred HHHhhhhHHHHHHHHHHHHHHH
Confidence 3567889999999999877653
No 40
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=59.54 E-value=18 Score=20.01 Aligned_cols=22 Identities=0% Similarity=-0.331 Sum_probs=17.6
Q ss_pred HHHHhCHHHHHHHHHHHHHhhC
Q psy10395 5 LALKLHWIECLDNYKCLDSYKG 26 (79)
Q Consensus 5 ~~l~~~p~~~~~~~~ei~~~~g 26 (79)
-..++.|++|+|+-.+|...+.
T Consensus 109 ~~~arRlQiQERLT~qIa~~l~ 130 (188)
T PLN03044 109 EVYARRLQTQERLTRQIADAIV 130 (188)
T ss_pred HHHhcCcHHHHHHHHHHHHHHH
Confidence 3567889999999988877653
No 41
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=59.33 E-value=12 Score=14.90 Aligned_cols=12 Identities=8% Similarity=-0.352 Sum_probs=8.1
Q ss_pred HHhCHHHHHHHH
Q psy10395 7 LKLHWIECLDNY 18 (79)
Q Consensus 7 l~~~p~~~~~~~ 18 (79)
..+||++++.++
T Consensus 23 ~~~HPei~~~i~ 34 (38)
T PF14483_consen 23 CERHPEIQQEIR 34 (38)
T ss_dssp HHHSTHHHHHHH
T ss_pred HHhChhHHHHHH
Confidence 346888877665
No 42
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=59.01 E-value=13 Score=15.08 Aligned_cols=17 Identities=6% Similarity=-0.474 Sum_probs=12.1
Q ss_pred HHHHHHHhCHHHHHHHH
Q psy10395 2 TKILALKLHWIECLDNY 18 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~ 18 (79)
+-++-++++||+|.-+.
T Consensus 14 ~gl~~~l~DpdvqrgL~ 30 (42)
T PF07849_consen 14 FGLLRALRDPDVQRGLG 30 (42)
T ss_pred HHHHHHHcCHHHHHHHH
Confidence 34566788999987654
No 43
>KOG0736|consensus
Probab=57.94 E-value=46 Score=23.02 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhCC---CCCCcccccCCHHHHHHHHHHhcc
Q psy10395 14 CLDNYKCLDSYKGT---RRPSLEDRQYLDYAQAVISEVFRI 51 (79)
Q Consensus 14 ~~~~~~ei~~~~g~---~~~~~~~~~~~~~~~~~~~e~~r~ 51 (79)
..+++.|-...+|. +...|+|+..+..++..+.++.++
T Consensus 650 ls~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIql 690 (953)
T KOG0736|consen 650 LSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQL 690 (953)
T ss_pred HHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcC
Confidence 35667777777886 456899999999999999999986
No 44
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=57.42 E-value=19 Score=19.70 Aligned_cols=22 Identities=0% Similarity=-0.417 Sum_probs=17.6
Q ss_pred HHHHhCHHHHHHHHHHHHHhhC
Q psy10395 5 LALKLHWIECLDNYKCLDSYKG 26 (79)
Q Consensus 5 ~~l~~~p~~~~~~~~ei~~~~g 26 (79)
-..++.|++|+++-.+|...+.
T Consensus 103 ~~~arRlQiQERlT~qIa~~l~ 124 (180)
T TIGR00063 103 EFFARRPQVQERLTQQIAEALQ 124 (180)
T ss_pred HHHhcCchHHHHHHHHHHHHHH
Confidence 3567889999999988877653
No 45
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=54.24 E-value=10 Score=23.50 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=12.2
Q ss_pred cCCCeeecceeeCCCC
Q psy10395 63 CTEDTTFYNYFIPKKG 78 (79)
Q Consensus 63 ~~~~~~~~g~~ip~gt 78 (79)
..+|+.++|..|||||
T Consensus 278 Lle~~~v~~~~ipkgt 293 (410)
T TIGR03779 278 LLEPIQAGDLVIPKGT 293 (410)
T ss_pred EcCceeeCCEEecCCC
Confidence 4556666789999998
No 46
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=52.94 E-value=25 Score=19.63 Aligned_cols=21 Identities=0% Similarity=-0.274 Sum_probs=17.2
Q ss_pred HHHHhCHHHHHHHHHHHHHhh
Q psy10395 5 LALKLHWIECLDNYKCLDSYK 25 (79)
Q Consensus 5 ~~l~~~p~~~~~~~~ei~~~~ 25 (79)
-..++.|++|+++-.+|...+
T Consensus 123 ~~~arRlQvQERLT~qIa~~l 143 (201)
T PRK12606 123 DMFARRLQIQENLTRQIATAV 143 (201)
T ss_pred HHHhcCchHHHHHHHHHHHHH
Confidence 356788999999999887765
No 47
>PRK10456 arginine succinyltransferase; Provisional
Probab=52.52 E-value=17 Score=22.02 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=34.1
Q ss_pred HHHHHhCHHHH-HHHHHHHHHhhCC--CCCCcccc----cCCHHHH----------HHHHHHhcccCCC
Q psy10395 4 ILALKLHWIEC-LDNYKCLDSYKGT--RRPSLEDR----QYLDYAQ----------AVISEVFRINTIA 55 (79)
Q Consensus 4 ~~~l~~~p~~~-~~~~~ei~~~~g~--~~~~~~~~----~~~~~~~----------~~~~e~~r~~~~~ 55 (79)
+++++.||+.. +++..|++.+... ..|-|+.+ -+|+|.. .++.|.+.-+|+-
T Consensus 145 fLFiA~~~erF~~~viAEmRG~~De~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLMP~~PIY 213 (344)
T PRK10456 145 FMFMAAFRDKFNDKVVAEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADYLCGTGQKAFIAELMPKHPIY 213 (344)
T ss_pred HHHHHhhHhhhhhhhheeccCccCCCCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHCCCCCcc
Confidence 46789999764 6788999888765 55666654 2444433 3566766555553
No 48
>PHA01346 hypothetical protein
Probab=51.20 E-value=19 Score=14.78 Aligned_cols=17 Identities=18% Similarity=-0.341 Sum_probs=12.5
Q ss_pred CHHH-HHHHHHHHHHhhC
Q psy10395 10 HWIE-CLDNYKCLDSYKG 26 (79)
Q Consensus 10 ~p~~-~~~~~~ei~~~~g 26 (79)
+|+. |++++.|++..+.
T Consensus 29 dpdfsqekihaeldsllr 46 (53)
T PHA01346 29 DPDFSQEKIHAELDSLLR 46 (53)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 5654 7899999887653
No 49
>KOG3348|consensus
Probab=50.94 E-value=23 Score=16.91 Aligned_cols=20 Identities=10% Similarity=-0.094 Sum_probs=15.9
Q ss_pred HHHhCHHHHHHHHHHHHHhh
Q psy10395 6 ALKLHWIECLDNYKCLDSYK 25 (79)
Q Consensus 6 ~l~~~p~~~~~~~~ei~~~~ 25 (79)
.|++|.-+...+++||..+=
T Consensus 48 ~L~rHRlVN~~L~Eeik~iH 67 (85)
T KOG3348|consen 48 LLARHRLVNSILAEEIKEIH 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 57788888888999887763
No 50
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=50.72 E-value=27 Score=19.30 Aligned_cols=22 Identities=0% Similarity=-0.460 Sum_probs=17.5
Q ss_pred HHHHhCHHHHHHHHHHHHHhhC
Q psy10395 5 LALKLHWIECLDNYKCLDSYKG 26 (79)
Q Consensus 5 ~~l~~~p~~~~~~~~ei~~~~g 26 (79)
-..++.|++|+++-.+|...+.
T Consensus 111 ~~~arRlQiQERlT~qIa~al~ 132 (188)
T PRK09347 111 DFFARRPQVQERLTAQIADALQ 132 (188)
T ss_pred HHHHcCchhHHHHHHHHHHHHH
Confidence 3567889999999988877653
No 51
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=49.74 E-value=20 Score=16.73 Aligned_cols=16 Identities=0% Similarity=-0.315 Sum_probs=12.5
Q ss_pred hCHHHHHHHHHHHHHh
Q psy10395 9 LHWIECLDNYKCLDSY 24 (79)
Q Consensus 9 ~~p~~~~~~~~ei~~~ 24 (79)
++|+...|+++|+..-
T Consensus 1 ~~~~~~~rLraE~~aP 16 (75)
T PF11998_consen 1 MDPEQYARLRAEAQAP 16 (75)
T ss_pred CCHHHHHHHHHHHHCc
Confidence 3688889999998653
No 52
>KOG0739|consensus
Probab=49.42 E-value=60 Score=19.93 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhh-CC-CCCCcccccCCHHHHHHHHHHhcc
Q psy10395 14 CLDNYKCLDSYK-GT-RRPSLEDRQYLDYAQAVISEVFRI 51 (79)
Q Consensus 14 ~~~~~~ei~~~~-g~-~~~~~~~~~~~~~~~~~~~e~~r~ 51 (79)
+.|+|..+..++ -. +...|++...+.-....++|+.=+
T Consensus 112 ~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVIL 151 (439)
T KOG0739|consen 112 KKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVIL 151 (439)
T ss_pred HHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheee
Confidence 567777776654 33 677899998888777778887543
No 53
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=49.09 E-value=45 Score=19.13 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccCC
Q psy10395 14 CLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINTI 54 (79)
Q Consensus 14 ~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~~ 54 (79)
-+|+-++|+.++|. +....-|+.. ||---.+..-+|.|+-
T Consensus 102 SAKvm~~ikavLgaTKiDLPVDIND-PYDlGLLLRhLRHHSN 142 (238)
T PF02084_consen 102 SAKVMEDIKAVLGATKIDLPVDIND-PYDLGLLLRHLRHHSN 142 (238)
T ss_pred cHHHHHHHHHHhcccccccccccCC-hhhHHHHHHHHHHHHH
Confidence 35777888899987 4333333332 5544444455565543
No 54
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=49.04 E-value=25 Score=15.43 Aligned_cols=17 Identities=0% Similarity=-0.511 Sum_probs=12.5
Q ss_pred HHHHHhCHHHHHHHHHH
Q psy10395 4 ILALKLHWIECLDNYKC 20 (79)
Q Consensus 4 ~~~l~~~p~~~~~~~~e 20 (79)
+-.++++|+...+++.-
T Consensus 17 ~~~iaRqPe~~~~l~~~ 33 (58)
T TIGR01260 17 LESAARQPELKPLLRTT 33 (58)
T ss_pred HHHHHcChhHHHhHHHH
Confidence 34678899988887753
No 55
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=48.85 E-value=24 Score=15.96 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHhccc
Q psy10395 37 YLDYAQAVISEVFRIN 52 (79)
Q Consensus 37 ~~~~~~~~~~e~~r~~ 52 (79)
+..++..+++|+.|+.
T Consensus 39 r~~fv~~~IkEA~RFk 54 (65)
T PF15300_consen 39 RKQFVEMIIKEAARFK 54 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3367888999999974
No 56
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=47.23 E-value=20 Score=17.00 Aligned_cols=16 Identities=13% Similarity=-0.427 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhhC
Q psy10395 11 WIECLDNYKCLDSYKG 26 (79)
Q Consensus 11 p~~~~~~~~ei~~~~g 26 (79)
|+..+.+++|+.+++.
T Consensus 37 p~~l~~lk~dil~VIs 52 (84)
T PRK13989 37 PDYLPALQKELVAVIS 52 (84)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554443
No 57
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=44.84 E-value=17 Score=19.91 Aligned_cols=21 Identities=0% Similarity=-0.363 Sum_probs=15.8
Q ss_pred HHHHhCHHHHHHHHHHHHHhh
Q psy10395 5 LALKLHWIECLDNYKCLDSYK 25 (79)
Q Consensus 5 ~~l~~~p~~~~~~~~ei~~~~ 25 (79)
-..++.|++|+++-.+|...+
T Consensus 103 ~~~arRlQlQERLT~qIa~~l 123 (179)
T PF01227_consen 103 DFFARRLQLQERLTRQIADAL 123 (179)
T ss_dssp HHHHSSEE-HHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHH
Confidence 366788999999988887654
No 58
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=43.81 E-value=42 Score=19.60 Aligned_cols=21 Identities=0% Similarity=-0.282 Sum_probs=17.2
Q ss_pred HHHhCHHHHHHHHHHHHHhhC
Q psy10395 6 ALKLHWIECLDNYKCLDSYKG 26 (79)
Q Consensus 6 ~l~~~p~~~~~~~~ei~~~~g 26 (79)
..++.|++|+++-.+|...+.
T Consensus 183 ~~arRlQiQERLT~qIAdaL~ 203 (259)
T PTZ00484 183 IFSRRLQVQERLTQQIANALQ 203 (259)
T ss_pred HHhcccHHHHHHHHHHHHHHH
Confidence 567889999999988877653
No 59
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=43.52 E-value=35 Score=15.49 Aligned_cols=17 Identities=0% Similarity=-0.449 Sum_probs=12.6
Q ss_pred HHHHHhCHHHHHHHHHH
Q psy10395 4 ILALKLHWIECLDNYKC 20 (79)
Q Consensus 4 ~~~l~~~p~~~~~~~~e 20 (79)
+-..+++||.+.+++.-
T Consensus 27 ~e~iaRqPE~~~~i~~~ 43 (66)
T PRK13467 27 FKSAARQPEMIGQLRSL 43 (66)
T ss_pred HHHHHcChhHHHhHHHH
Confidence 34678899988888754
No 60
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=43.22 E-value=24 Score=21.07 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=32.2
Q ss_pred HHHHHhCHHHH-HHHHHHHHHhhCC--CCCCccccc----CCHHHH----------HHHHHHhcccCC
Q psy10395 4 ILALKLHWIEC-LDNYKCLDSYKGT--RRPSLEDRQ----YLDYAQ----------AVISEVFRINTI 54 (79)
Q Consensus 4 ~~~l~~~p~~~-~~~~~ei~~~~g~--~~~~~~~~~----~~~~~~----------~~~~e~~r~~~~ 54 (79)
++.++.||+.. +++..|++.+... +.|-|+.+. +|.|.+ +++.|.+.-||+
T Consensus 145 flfmA~~r~~F~~~ViAEmRG~sDedGrSPFW~~lg~hFF~mdF~~AD~l~g~~~k~FIaeLmPk~PI 212 (336)
T COG3138 145 FLFMAAFRDRFADKVVAEMRGVSDEDGRSPFWESLGRHFFSMDFSQADYLCGTGQKAFIAELMPKHPI 212 (336)
T ss_pred hhhhHhhHHHHHHHHHHHHhccccccCCChhHHHHhhhhhccchhhhhHhhccCcchhHHHhCCCCce
Confidence 46788999876 6788999887765 555565432 333322 456666655555
No 61
>PRK13990 cell division topological specificity factor MinE; Provisional
Probab=43.11 E-value=38 Score=16.41 Aligned_cols=18 Identities=0% Similarity=-0.380 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy10395 10 HWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~~g~ 27 (79)
.|++...+++||.+++.+
T Consensus 41 ~pd~L~~lk~eIl~VI~K 58 (90)
T PRK13990 41 SSHLLAELKDEIIEVVKK 58 (90)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 478999999999998765
No 62
>KOG4634|consensus
Probab=42.50 E-value=41 Score=16.59 Aligned_cols=15 Identities=7% Similarity=-0.429 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHh
Q psy10395 10 HWIECLDNYKCLDSY 24 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~ 24 (79)
+|++++.+.+|+...
T Consensus 58 ~pe~e~eLk~el~rl 72 (105)
T KOG4634|consen 58 DPEYEQELKEELFRL 72 (105)
T ss_pred CHHHHHHHHHHHHHH
Confidence 688999999988776
No 63
>PRK13987 cell division topological specificity factor MinE; Provisional
Probab=42.20 E-value=32 Score=16.67 Aligned_cols=18 Identities=0% Similarity=-0.531 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy10395 10 HWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~~g~ 27 (79)
.|+..+.+++|+.+++.+
T Consensus 33 sp~~l~~lk~eIl~VI~k 50 (91)
T PRK13987 33 SPDVLEMIKEDILKVISK 50 (91)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 467777777777776654
No 64
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=41.58 E-value=38 Score=15.35 Aligned_cols=17 Identities=0% Similarity=-0.392 Sum_probs=12.7
Q ss_pred HHHHHhCHHHHHHHHHH
Q psy10395 4 ILALKLHWIECLDNYKC 20 (79)
Q Consensus 4 ~~~l~~~p~~~~~~~~e 20 (79)
+-..+++|+.+.+++..
T Consensus 27 ~e~vaRqPea~~~l~~~ 43 (66)
T PRK13466 27 LSSTARQPEMQSKLMAG 43 (66)
T ss_pred HHHHHcChhHHHhHHHH
Confidence 34578899998888754
No 65
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=41.54 E-value=38 Score=15.72 Aligned_cols=15 Identities=0% Similarity=-0.241 Sum_probs=11.2
Q ss_pred HHHHhCHHHHHHHHH
Q psy10395 5 LALKLHWIECLDNYK 19 (79)
Q Consensus 5 ~~l~~~p~~~~~~~~ 19 (79)
-..+++||...+++.
T Consensus 34 e~iaRqPe~~~~l~~ 48 (74)
T PRK07558 34 SGALRNPSAADSQFG 48 (74)
T ss_pred HHHHcCchHHHhHHH
Confidence 457888988887764
No 66
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=40.25 E-value=46 Score=15.98 Aligned_cols=18 Identities=6% Similarity=-0.391 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy10395 10 HWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~~g~ 27 (79)
.|++.+.+++|+.+++.+
T Consensus 35 ~p~~l~~lk~eil~VIsK 52 (87)
T PRK13991 35 TPEMMEQMKADLAEVIKR 52 (87)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 588999999999888754
No 67
>PRK03636 hypothetical protein; Provisional
Probab=40.02 E-value=26 Score=19.19 Aligned_cols=17 Identities=12% Similarity=-0.369 Sum_probs=14.6
Q ss_pred HHHHHHHhCHHHHHHHH
Q psy10395 2 TKILALKLHWIECLDNY 18 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~ 18 (79)
|++.+|..|++..++++
T Consensus 28 wiLnyl~~h~~lL~~VH 44 (179)
T PRK03636 28 WILNYLMSHDQLMEKVH 44 (179)
T ss_pred HHHHHHHhCHHHHhhee
Confidence 67889999999998875
No 68
>PHA00672 hypothetical protein
Probab=39.70 E-value=24 Score=18.32 Aligned_cols=18 Identities=17% Similarity=0.006 Sum_probs=9.2
Q ss_pred cccCCCeeecceeeCCCC
Q psy10395 61 HRCTEDTTFYNYFIPKKG 78 (79)
Q Consensus 61 ~~~~~~~~~~g~~ip~gt 78 (79)
+..+..+.-....|||||
T Consensus 41 H~Fs~GvYARei~IPkGt 58 (152)
T PHA00672 41 HLFHAGVYARTIRIPAGV 58 (152)
T ss_pred hhhccceeEEEEeccCce
Confidence 333444444445667665
No 69
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=39.45 E-value=12 Score=22.57 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=33.4
Q ss_pred HHHHHhCHHHH-HHHHHHHHHhhCC--CCCCcccc----cCCHHHH----------HHHHHHhcccCC
Q psy10395 4 ILALKLHWIEC-LDNYKCLDSYKGT--RRPSLEDR----QYLDYAQ----------AVISEVFRINTI 54 (79)
Q Consensus 4 ~~~l~~~p~~~-~~~~~ei~~~~g~--~~~~~~~~----~~~~~~~----------~~~~e~~r~~~~ 54 (79)
+++++.||+.. +++..|++.+... ..|-|+.+ -+|+|.. .++.|.+.-+|+
T Consensus 144 fLFiA~~~erF~~~viAEmrG~~De~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLMP~~PI 211 (336)
T TIGR03245 144 LLFMAAHRERFQSRIIVEIQGVQDDNGDSPFWDAIGRHFFDLDFATAEYYSGIKSKTFIAELMPPYPI 211 (336)
T ss_pred HHHHHhhHhhhhhhheeeccCccCCCCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHCCCCCc
Confidence 46789999865 6788899888765 55666654 2444433 356666655554
No 70
>PF12465 Pr_beta_C: Proteasome beta subunits C terminal ; InterPro: IPR024689 This domain is found in the C terminus of beta-type subunits of the proteasome, a multimeric complex that degrades proteins into peptides as part of the MHC class I-mediated Ag-presenting pathway []. This domain is approximately 40 amino acids in length. It is found in association with PF00227 from PFAM. It contains a conserved GTT sequence motif and a single completely conserved residue Y that may be functionally important.; PDB: 3UN8_H 2GPL_V 3E47_H 3OEV_H 3SDK_V 3BDM_H 3GPJ_H 3DY3_H 3NZW_H 3OEU_V ....
Probab=39.33 E-value=13 Score=14.80 Aligned_cols=11 Identities=9% Similarity=-0.004 Sum_probs=2.9
Q ss_pred ecceeeCCCCC
Q psy10395 69 FYNYFIPKKGK 79 (79)
Q Consensus 69 ~~g~~ip~gt~ 79 (79)
-+.|.+|+||+
T Consensus 8 ~~~Ykf~~GTT 18 (38)
T PF12465_consen 8 QGSYKFKRGTT 18 (38)
T ss_dssp SS-----TT-S
T ss_pred ccccccCCCce
Confidence 34577788874
No 71
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=39.29 E-value=32 Score=16.91 Aligned_cols=18 Identities=6% Similarity=-0.392 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy10395 10 HWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~~g~ 27 (79)
.|+..+.+++||..++.+
T Consensus 37 sp~~l~~mk~dIl~VIsk 54 (97)
T PRK13988 37 SPELLEQMRKEILEVVAR 54 (97)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 478888888888887654
No 72
>PRK11409 antitoxin YefM; Provisional
Probab=38.79 E-value=47 Score=15.59 Aligned_cols=21 Identities=19% Similarity=-0.005 Sum_probs=16.4
Q ss_pred HHHHhCHHHHHHHHHHHHHhh
Q psy10395 5 LALKLHWIECLDNYKCLDSYK 25 (79)
Q Consensus 5 ~~l~~~p~~~~~~~~ei~~~~ 25 (79)
.+|..+|...+++.+.+.+.-
T Consensus 52 l~ll~~p~~~~~l~~~i~~~~ 72 (83)
T PRK11409 52 AYLLRSPANARRLMDSIDSLK 72 (83)
T ss_pred HHHhcCHHHHHHHHHHHHHHH
Confidence 467789999999988877753
No 73
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=38.52 E-value=13 Score=22.45 Aligned_cols=51 Identities=20% Similarity=0.172 Sum_probs=33.6
Q ss_pred HHHHHhCHHHH-HHHHHHHHHhhCC--CCCCcccc----cCCHHHH----------HHHHHHhcccCC
Q psy10395 4 ILALKLHWIEC-LDNYKCLDSYKGT--RRPSLEDR----QYLDYAQ----------AVISEVFRINTI 54 (79)
Q Consensus 4 ~~~l~~~p~~~-~~~~~ei~~~~g~--~~~~~~~~----~~~~~~~----------~~~~e~~r~~~~ 54 (79)
+++++.||+.. +++..|++.+... ..|-|+.+ -+|+|.. .++.|.+.-+|+
T Consensus 143 fLFiA~~~erF~~~viAEmrG~~De~G~SPFWd~lg~hFF~mdF~~AD~Lsg~~~k~FIaeLMP~~PI 210 (335)
T TIGR03243 143 FLFIAAFRERFGDKIIAEMRGVSDEQGRSPFWEALGRHFFSMDFAQADYLSGIGSKTFIAELMPKYPI 210 (335)
T ss_pred HHHHHhhHhhhhhhheeeccCccCCCCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHCCCCCc
Confidence 46789999865 6788899888765 55666654 2444433 356666655555
No 74
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=37.11 E-value=50 Score=15.49 Aligned_cols=17 Identities=0% Similarity=-0.513 Sum_probs=12.6
Q ss_pred HHHHHhCHHHHHHHHHH
Q psy10395 4 ILALKLHWIECLDNYKC 20 (79)
Q Consensus 4 ~~~l~~~p~~~~~~~~e 20 (79)
+-..+++||.+.+++..
T Consensus 35 ~~~iaRqPe~~~~l~~~ 51 (78)
T PRK06876 35 LEGAARQPELIPMLQTK 51 (78)
T ss_pred HHHHHcChHHHHhHHHH
Confidence 34678899998888754
No 75
>PRK03057 hypothetical protein; Provisional
Probab=36.68 E-value=28 Score=19.13 Aligned_cols=17 Identities=18% Similarity=-0.183 Sum_probs=14.7
Q ss_pred HHHHHHHhCHHHHHHHH
Q psy10395 2 TKILALKLHWIECLDNY 18 (79)
Q Consensus 2 ~~~~~l~~~p~~~~~~~ 18 (79)
|.+.+|..|++..++++
T Consensus 26 wiLnYl~~h~~lL~~VH 42 (180)
T PRK03057 26 FVLLYLLQHPHLLENVH 42 (180)
T ss_pred HHHHHHHcCHHHHhhee
Confidence 67889999999988875
No 76
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=36.16 E-value=14 Score=19.61 Aligned_cols=30 Identities=10% Similarity=-0.174 Sum_probs=20.4
Q ss_pred HHHHHHhCHHHHHHHHHHHHHhhCC-CCCCc
Q psy10395 3 KILALKLHWIECLDNYKCLDSYKGT-RRPSL 32 (79)
Q Consensus 3 ~~~~l~~~p~~~~~~~~ei~~~~g~-~~~~~ 32 (79)
.+-.++.+|++-+.+.+++.+.+.. +..+.
T Consensus 114 ai~~iL~~p~V~~~~K~~i~~i~~~Kgei~F 144 (155)
T PF10777_consen 114 AIDKILQSPQVPDEIKQGIQRIISTKGEISF 144 (155)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCceeE
Confidence 3456777888888888888877655 44443
No 77
>PF13656 RNA_pol_L_2: RNA polymerase Rpb3/Rpb11 dimerisation domain; PDB: 2Y0S_L 1I3Q_K 4A3D_K 2JA8_K 3GTP_K 1R9T_K 3PO2_K 4A3J_K 3HOX_K 2JA7_K ....
Probab=36.16 E-value=31 Score=15.96 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=8.9
Q ss_pred CCCeeecceeeC
Q psy10395 64 TEDTTFYNYFIP 75 (79)
Q Consensus 64 ~~~~~~~g~~ip 75 (79)
..++.+.||.+|
T Consensus 25 ~p~V~fagY~vp 36 (77)
T PF13656_consen 25 DPDVEFAGYRVP 36 (77)
T ss_dssp STTEEEEEEEES
T ss_pred CCCeEEEEeccC
Confidence 456778888886
No 78
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=36.05 E-value=37 Score=16.39 Aligned_cols=18 Identities=6% Similarity=-0.404 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy10395 10 HWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~~g~ 27 (79)
.|++...+++||.+++.+
T Consensus 35 ~pd~l~~Lr~eIl~VI~K 52 (88)
T COG0851 35 QPDYLEQLRKEILEVISK 52 (88)
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 388889999999988764
No 79
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=35.13 E-value=56 Score=15.46 Aligned_cols=25 Identities=8% Similarity=-0.405 Sum_probs=19.6
Q ss_pred HHHHHHhCHHHHHHHHHHHHHhhCC
Q psy10395 3 KILALKLHWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 3 ~~~~l~~~p~~~~~~~~ei~~~~g~ 27 (79)
+|..|...|++.++-.++-+.++..
T Consensus 9 li~~L~~dp~~rerF~~DPea~~~~ 33 (81)
T cd07922 9 LIQELFKDPGLIERFQDDPSAVFEE 33 (81)
T ss_pred HHHHHhcCHHHHHHHHHCHHHHHHH
Confidence 5678889999999888877776544
No 80
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=35.12 E-value=56 Score=15.48 Aligned_cols=17 Identities=6% Similarity=-0.250 Sum_probs=12.6
Q ss_pred HHHHHhCHHHHHHHHHH
Q psy10395 4 ILALKLHWIECLDNYKC 20 (79)
Q Consensus 4 ~~~l~~~p~~~~~~~~e 20 (79)
+-..+++||...+++.-
T Consensus 36 ~eaiaRqPEa~~~l~~~ 52 (81)
T PRK05880 36 ISGVARQPEAQGRLFTP 52 (81)
T ss_pred HHHHHcChhHHHhHHHH
Confidence 34678899988888754
No 81
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=33.41 E-value=64 Score=15.60 Aligned_cols=16 Identities=13% Similarity=-0.161 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHhh
Q psy10395 10 HWIECLDNYKCLDSYK 25 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~~ 25 (79)
.|+..+.+.+||+++-
T Consensus 66 cpeA~~eL~~eI~eAK 81 (91)
T PF08285_consen 66 CPEAAKELQKEIKEAK 81 (91)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5888888999998764
No 82
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=33.34 E-value=24 Score=18.09 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=12.7
Q ss_pred ccCCCeeecceeeCCCC
Q psy10395 62 RCTEDTTFYNYFIPKKG 78 (79)
Q Consensus 62 ~~~~~~~~~g~~ip~gt 78 (79)
.+..|..+.|-.||+||
T Consensus 72 I~~~d~~~~g~~i~~Gt 88 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGT 88 (122)
T ss_pred ecCCCcccCCeeecceE
Confidence 34557778888889886
No 83
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=32.72 E-value=44 Score=13.55 Aligned_cols=18 Identities=6% Similarity=-0.199 Sum_probs=12.7
Q ss_pred HHHhCHHHHHHHHHHHHH
Q psy10395 6 ALKLHWIECLDNYKCLDS 23 (79)
Q Consensus 6 ~l~~~p~~~~~~~~ei~~ 23 (79)
.|+.+++..+++.+-++.
T Consensus 18 ell~d~~~me~Ieerie~ 35 (40)
T PF13040_consen 18 ELLNDKEAMEKIEERIEE 35 (40)
T ss_pred HHHcCHHHHHHHHHHHHH
Confidence 466788888887766654
No 84
>PF09521 RE_NgoPII: NgoPII restriction endonuclease; InterPro: IPR019046 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease NgoPII, which recognises and cleaves the double-stranded sequence GG^CC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=32.61 E-value=1.1e+02 Score=18.02 Aligned_cols=26 Identities=0% Similarity=-0.263 Sum_probs=19.0
Q ss_pred HHHH--HHHhCHHHHHHHHHHHHHhhCC
Q psy10395 2 TKIL--ALKLHWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 2 ~~~~--~l~~~p~~~~~~~~ei~~~~g~ 27 (79)
|++| .-+.++++.++++.+|..-+..
T Consensus 144 ~mVYG~~y~A~~e~Ye~i~~~Ik~gv~~ 171 (263)
T PF09521_consen 144 WMVYGDCYCADHEIYERIKNTIKEGVES 171 (263)
T ss_pred hhhhccHhhccHHHHHHHHHHHHHHhcc
Confidence 4444 4567789999999998876644
No 85
>PLN02531 GTP cyclohydrolase I
Probab=32.51 E-value=74 Score=20.41 Aligned_cols=21 Identities=0% Similarity=-0.285 Sum_probs=16.9
Q ss_pred HHHHhCHHHHHHHHHHHHHhh
Q psy10395 5 LALKLHWIECLDNYKCLDSYK 25 (79)
Q Consensus 5 ~~l~~~p~~~~~~~~ei~~~~ 25 (79)
-..++.|++|+|+-.+|...+
T Consensus 387 ~~~arRlQvQERLT~qIA~al 407 (469)
T PLN02531 387 HFYGFRLQVQERLTRQIAETV 407 (469)
T ss_pred HHHhccchHHHHHHHHHHHHH
Confidence 356788999999998887665
No 86
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=32.28 E-value=64 Score=15.27 Aligned_cols=17 Identities=0% Similarity=-0.310 Sum_probs=12.5
Q ss_pred HHHHHhCHHHHHHHHHH
Q psy10395 4 ILALKLHWIECLDNYKC 20 (79)
Q Consensus 4 ~~~l~~~p~~~~~~~~e 20 (79)
+-..+++|+...+++.-
T Consensus 42 ~e~iARqPEa~~~l~~~ 58 (80)
T PRK07874 42 LEGMARQPEMAGQLRTT 58 (80)
T ss_pred HHHHHcCHhHHHhHHHH
Confidence 34678899988888753
No 87
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=31.35 E-value=67 Score=15.18 Aligned_cols=18 Identities=6% Similarity=-0.197 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy10395 10 HWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~~g~ 27 (79)
.|++.+-+++-|..++|.
T Consensus 23 s~ev~e~m~~~v~~llG~ 40 (86)
T PF05542_consen 23 SPEVLEAMKQHVSGLLGN 40 (86)
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 688999999999999886
No 88
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=30.86 E-value=67 Score=15.05 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=12.3
Q ss_pred HHHHHhCHHHHHHHHHH
Q psy10395 4 ILALKLHWIECLDNYKC 20 (79)
Q Consensus 4 ~~~l~~~p~~~~~~~~e 20 (79)
+--.+++|+...+++.-
T Consensus 35 ~e~vaRqPe~~~~l~~~ 51 (77)
T MTH00222 35 IIGYARNPSLKQQLFTY 51 (77)
T ss_pred HHHHHcChhhHHhHHHH
Confidence 34567889888887754
No 89
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=30.20 E-value=70 Score=15.05 Aligned_cols=18 Identities=6% Similarity=-0.387 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy10395 10 HWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~~g~ 27 (79)
.|+..+.+++|+.+++.+
T Consensus 34 ~p~~l~~mk~dil~VIsk 51 (81)
T TIGR01215 34 APEYLEELRKEILEVISK 51 (81)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 588889999999888754
No 90
>cd07027 RNAP_RPB11_like RPB11 subunit of RNA polymerase. The eukaryotic RPB11 subunit of RNA polymerase (RNAP), as well as its archaeal (L subunit) and bacterial (alpha subunit) counterparts, is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. The assembly of the two largest eukaryotic RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of RPB3/RPB11 heterodimer subunits. This is also true for the archaeal (D/
Probab=29.62 E-value=37 Score=15.99 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=6.4
Q ss_pred CeeecceeeC
Q psy10395 66 DTTFYNYFIP 75 (79)
Q Consensus 66 ~~~~~g~~ip 75 (79)
++.+.||.+|
T Consensus 35 ~V~fAgY~vp 44 (83)
T cd07027 35 QVDFARYYIK 44 (83)
T ss_pred CeeEEEEecC
Confidence 4556777774
No 91
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=29.56 E-value=45 Score=13.48 Aligned_cols=7 Identities=43% Similarity=0.036 Sum_probs=3.3
Q ss_pred HHhCHHH
Q psy10395 7 LKLHWIE 13 (79)
Q Consensus 7 l~~~p~~ 13 (79)
|..||++
T Consensus 23 L~k~PeI 29 (39)
T PF08557_consen 23 LKKHPEI 29 (39)
T ss_pred HHhChHH
Confidence 4445544
No 92
>smart00766 DnaG_DnaB_bind DNA primase DnaG DnaB-binding. DnaG_DnaB_bind defines a domain of primase required for functional interaction with DnaB that attracts primase to the replication fork. DnaG_DnaB_bind is responsible for the interaction between DnaG and DnaB.
Probab=28.25 E-value=58 Score=15.44 Aligned_cols=17 Identities=12% Similarity=-0.406 Sum_probs=12.7
Q ss_pred HHHHHHhCHHHHHHHHH
Q psy10395 3 KILALKLHWIECLDNYK 19 (79)
Q Consensus 3 ~~~~l~~~p~~~~~~~~ 19 (79)
++..|+.||++...+..
T Consensus 4 lL~lll~~P~l~~~v~~ 20 (125)
T smart00766 4 LIRLLLQNPELASLVPD 20 (125)
T ss_pred HHHHHHHCHHHHhhCCC
Confidence 56688889998777643
No 93
>PF03592 Terminase_2: Terminase small subunit ; InterPro: IPR005335 Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].; GO: 0006323 DNA packaging; PDB: 3ZQP_B 2CMP_A 3ZQO_C 3ZQN_B 3ZQQ_B 3ZQM_D.
Probab=27.90 E-value=95 Score=15.93 Aligned_cols=19 Identities=5% Similarity=-0.345 Sum_probs=13.7
Q ss_pred HHHHhCHHHHHHHHHHHHH
Q psy10395 5 LALKLHWIECLDNYKCLDS 23 (79)
Q Consensus 5 ~~l~~~p~~~~~~~~ei~~ 23 (79)
.-|+.+|.|++++.+-...
T Consensus 37 srLL~n~~V~~~I~~~~~e 55 (144)
T PF03592_consen 37 SRLLRNPKVKAYIEELMKE 55 (144)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHH
Confidence 3578899999888654443
No 94
>cd06927 RNAP_L L subunit of Archaeal RNA polymerase. The archaeal L subunit of RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The assembly of the two largest archaeal RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of the archaeal D/L heterodimer.
Probab=27.85 E-value=41 Score=15.84 Aligned_cols=11 Identities=18% Similarity=0.162 Sum_probs=6.9
Q ss_pred CCeeecceeeC
Q psy10395 65 EDTTFYNYFIP 75 (79)
Q Consensus 65 ~~~~~~g~~ip 75 (79)
.++.+.||.+|
T Consensus 34 ~~V~fAgY~vp 44 (83)
T cd06927 34 PGVKVASYDIE 44 (83)
T ss_pred CCeEEEEeecC
Confidence 34566777765
No 95
>cd07029 RNAP_I_III_AC19 AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC19 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC19 subunit is the equivalent of the RPB11 subunit of RNAP II. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association. The homology of AC19 to RPB11 suggests a similar function. The AC19 subunit is likely to ass
Probab=27.47 E-value=37 Score=16.10 Aligned_cols=10 Identities=40% Similarity=0.869 Sum_probs=6.3
Q ss_pred CeeecceeeC
Q psy10395 66 DTTFYNYFIP 75 (79)
Q Consensus 66 ~~~~~g~~ip 75 (79)
++.+.||.+|
T Consensus 35 ~V~fagY~vp 44 (85)
T cd07029 35 EVEFCGYSIP 44 (85)
T ss_pred CceEEeeccc
Confidence 3556777775
No 96
>PRK01146 DNA-directed RNA polymerase subunit L; Provisional
Probab=27.29 E-value=43 Score=15.88 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=6.2
Q ss_pred CeeecceeeC
Q psy10395 66 DTTFYNYFIP 75 (79)
Q Consensus 66 ~~~~~g~~ip 75 (79)
++.+.||.+|
T Consensus 37 ~V~fAgY~vp 46 (85)
T PRK01146 37 GVEAASYDID 46 (85)
T ss_pred CeeEEEeecC
Confidence 4556677665
No 97
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=26.99 E-value=94 Score=15.47 Aligned_cols=18 Identities=0% Similarity=-0.413 Sum_probs=13.3
Q ss_pred HHHHHhCHHHHHHHHHHH
Q psy10395 4 ILALKLHWIECLDNYKCL 21 (79)
Q Consensus 4 ~~~l~~~p~~~~~~~~ei 21 (79)
+-..+++||...+++...
T Consensus 42 le~iARQPEa~~~l~t~m 59 (101)
T PRK13464 42 LEGVARQPELGGMLLGRM 59 (101)
T ss_pred HHHHHcChhHHHhHHHHH
Confidence 446788999988887543
No 98
>KOG3438|consensus
Probab=26.46 E-value=38 Score=16.85 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.5
Q ss_pred CCCeeecceeeCC
Q psy10395 64 TEDTTFYNYFIPK 76 (79)
Q Consensus 64 ~~~~~~~g~~ip~ 76 (79)
...+.+.||.||-
T Consensus 40 ~peVefcGYtIPH 52 (105)
T KOG3438|consen 40 NPEVEFCGYTIPH 52 (105)
T ss_pred CCceEEEeccCCC
Confidence 4457788998873
No 99
>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.
Probab=23.83 E-value=34 Score=16.91 Aligned_cols=13 Identities=8% Similarity=-0.309 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q psy10395 11 WIECLDNYKCLDS 23 (79)
Q Consensus 11 p~~~~~~~~ei~~ 23 (79)
|++++.+.+|+..
T Consensus 64 Pe~~kel~eel~k 76 (99)
T PF05511_consen 64 PEYEKELNEELEK 76 (99)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444445444444
No 100
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=22.88 E-value=1.1e+02 Score=15.00 Aligned_cols=24 Identities=8% Similarity=-0.108 Sum_probs=14.6
Q ss_pred HHHHHHHhCHH-HHHHHHHHHHHhh
Q psy10395 2 TKILALKLHWI-ECLDNYKCLDSYK 25 (79)
Q Consensus 2 ~~~~~l~~~p~-~~~~~~~ei~~~~ 25 (79)
..+|++...|+ -+.+-++|..+.+
T Consensus 20 ~ifyFli~RPQrKr~K~~~~ml~sL 44 (97)
T COG1862 20 AIFYFLIIRPQRKRMKEHQELLNSL 44 (97)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHhc
Confidence 35677777774 3455566665554
No 101
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=22.42 E-value=1.5e+02 Score=18.92 Aligned_cols=45 Identities=18% Similarity=0.042 Sum_probs=30.7
Q ss_pred hCHHHHHHHHHHHHHhhCC-CCCCcccccCCHHHHHHHHHHhcccC
Q psy10395 9 LHWIECLDNYKCLDSYKGT-RRPSLEDRQYLDYAQAVISEVFRINT 53 (79)
Q Consensus 9 ~~p~~~~~~~~ei~~~~g~-~~~~~~~~~~~~~~~~~~~e~~r~~~ 53 (79)
.++++.+++.+..++-+.. ...+.++..+.+..........|+..
T Consensus 435 ~d~~~~~~l~~~f~~d~~~s~~i~~~~~~~r~~~~r~~~~~~rl~s 480 (483)
T PRK01642 435 DDTGFAADLAAMQEDYFARSRELDLEEWRKRPLWQRIAERVARLFS 480 (483)
T ss_pred ECHHHHHHHHHHHHHHHHhCeEcCHHHHhhCCHHHHHHHHHHHHhc
Confidence 4567777777666665555 55666777777888877777777654
No 102
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.07 E-value=98 Score=13.99 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy10395 10 HWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~~g~ 27 (79)
.++.++++++.+.+++|.
T Consensus 56 ~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 56 TKKRREETYDYLRAVLGD 73 (76)
T ss_pred CHHHHHHHHHHHHHHHch
Confidence 345667788888887774
No 103
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=22.04 E-value=75 Score=12.61 Aligned_cols=14 Identities=7% Similarity=-0.216 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhCC
Q psy10395 14 CLDNYKCLDSYKGT 27 (79)
Q Consensus 14 ~~~~~~ei~~~~g~ 27 (79)
.++++.|..+.+|+
T Consensus 10 i~kvr~eckrrfgk 23 (40)
T PF13043_consen 10 IQKVRAECKRRFGK 23 (40)
T ss_pred HHHHHHHHHHHhch
Confidence 57889999888875
No 104
>PHA02677 hypothetical protein; Provisional
Probab=21.15 E-value=1.3e+02 Score=15.09 Aligned_cols=15 Identities=0% Similarity=-0.432 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHHh
Q psy10395 10 HWIECLDNYKCLDSY 24 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~ 24 (79)
=|.+.+|+|.|-++.
T Consensus 19 VP~I~EKlR~E~~Af 33 (108)
T PHA02677 19 VPGIFEKLRQEHAAF 33 (108)
T ss_pred HHHHHHHHHHHHHHH
Confidence 389999999997764
No 105
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=20.86 E-value=1.2e+02 Score=14.49 Aligned_cols=18 Identities=6% Similarity=-0.407 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy10395 10 HWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~~g~ 27 (79)
.|++.+.+++||.+++.+
T Consensus 35 ~p~~l~~lk~dIl~VIsK 52 (86)
T PRK00296 35 EPDYLPQLRKEILEVIAK 52 (86)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 478888899998887754
No 106
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=20.84 E-value=94 Score=14.67 Aligned_cols=21 Identities=5% Similarity=-0.311 Sum_probs=11.9
Q ss_pred HHHHHhCHHHHHHHHHHHHHh
Q psy10395 4 ILALKLHWIECLDNYKCLDSY 24 (79)
Q Consensus 4 ~~~l~~~p~~~~~~~~ei~~~ 24 (79)
+...+..+.+++.+..|+..+
T Consensus 18 Ll~~a~R~rVk~~L~~ei~kl 38 (79)
T PF09032_consen 18 LLEQAKRKRVKDLLTNEIRKL 38 (79)
T ss_dssp HHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 344555666666666665543
No 107
>PRK06524 biotin carboxylase-like protein; Validated
Probab=20.73 E-value=98 Score=20.03 Aligned_cols=15 Identities=13% Similarity=-0.403 Sum_probs=12.1
Q ss_pred HHHHhCHHHHHHHHH
Q psy10395 5 LALKLHWIECLDNYK 19 (79)
Q Consensus 5 ~~l~~~p~~~~~~~~ 19 (79)
.+|++||++++.+..
T Consensus 88 ~~~~~~~~~~~~~~~ 102 (493)
T PRK06524 88 NYLLRHPETLEFIKR 102 (493)
T ss_pred hhhhcCHHHHHHHHh
Confidence 478999999887753
No 108
>KOG3451|consensus
Probab=20.37 E-value=1e+02 Score=14.16 Aligned_cols=22 Identities=9% Similarity=-0.232 Sum_probs=16.5
Q ss_pred HHHhCHHHHHHHHHHHHHhhCC
Q psy10395 6 ALKLHWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 6 ~l~~~p~~~~~~~~ei~~~~g~ 27 (79)
+|.-+|++-+.++.|+.+.+..
T Consensus 42 hLfV~p~~vemvk~~le~~le~ 63 (71)
T KOG3451|consen 42 HLFVNPSIVEMVKNELERILEN 63 (71)
T ss_pred eeeecHHHHHHHHHHHHHHHHh
Confidence 4556788888888888877654
No 109
>PF10965 DUF2767: Protein of unknown function (DUF2767); InterPro: IPR024493 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=20.16 E-value=98 Score=14.25 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy10395 10 HWIECLDNYKCLDSYKGT 27 (79)
Q Consensus 10 ~p~~~~~~~~ei~~~~g~ 27 (79)
+...-+++.+|+.+++|+
T Consensus 3 ~~~~~~~~Y~EmCRVVGd 20 (69)
T PF10965_consen 3 NDAKSDRLYQEMCRVVGD 20 (69)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 344556778888888774
Done!