RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10395
(79 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 57.3 bits (139), Expect = 2e-11
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
R P+ +D Q + Y AVI E R++ + P+ P T+DT Y IPK
Sbjct: 310 RSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPK 358
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 49.3 bits (118), Expect = 1e-08
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 25 KGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYN-YFIPK 76
G + L DRQ Y A+I E R ++P P + D +FIPK
Sbjct: 329 NGRNKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPK 381
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 42.9 bits (101), Expect = 3e-06
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 21 LDSYKGTRRPSLE-DRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKK 77
LDS G R E D +L+Y + V+ E FR++ P PH TT Y+IP K
Sbjct: 337 LDSVVGRNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAK 394
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 40.6 bits (95), Expect = 2e-05
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 21 LDSYKGTRRPSLE-DRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
LD+ G R E D L Y QAVI E FR++ P++ P E+ Y IPK
Sbjct: 338 LDAVVGRDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPK 394
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 39.6 bits (92), Expect = 4e-05
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 38 LDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
L+Y +A+I E FR++ +A PH DTT Y IPK
Sbjct: 386 LNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPK 424
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 39.2 bits (91), Expect = 4e-05
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 19 KCLDSYKGTRRPSLE-DRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
K LD G R E D L+Y +A E FRI+ A PH +DTT YFIPK
Sbjct: 353 KELDEVVGKDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPK 411
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 36.6 bits (84), Expect = 3e-04
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 25 KGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIP 75
KG+ + +D + L Y +A++ E RI + P+ P C +DT Y IP
Sbjct: 337 KGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIP 387
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 36.6 bits (85), Expect = 4e-04
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 34 DRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79
D L Y QAV+ E R++ P+ PH ED Y IP + K
Sbjct: 348 DTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESK 393
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 34.7 bits (80), Expect = 0.002
Identities = 20/59 (33%), Positives = 25/59 (42%)
Query: 18 YKCLDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
Y+ + G R + ED L Y AV E R + P+ P EDTT Y IP
Sbjct: 300 YREIREVCGDERVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPA 358
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 34.2 bits (78), Expect = 0.003
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 31 SLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
S ED + Y +AV+ E R + A PH+ ED Y IPK
Sbjct: 359 SEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPK 404
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 31.0 bits (70), Expect = 0.042
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79
RR D + L Y + + E R++ P+ H ED YFIPK+ +
Sbjct: 353 RRVEESDLEKLTYLKCTLKETLRLHPPIPLLL-HETAEDAEVAGYFIPKRSR 403
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 30.3 bits (68), Expect = 0.075
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 21 LDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKKGK 79
+DS G R P++ED + L Y VI+E R+ PV R E+ Y I K+G+
Sbjct: 432 VDSVLGDRFPTIEDMKKLKYTTRVINESLRLYPQPPVLI-RRSLENDMLGGYPI-KRGE 488
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 29.8 bits (67), Expect = 0.088
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 27 TRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
RR D L Y QA+ E FR + P+ P T+ Y+IPK
Sbjct: 337 NRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPK 386
>gnl|CDD|237737 PRK14507, PRK14507, putative bifunctional
4-alpha-glucanotransferase/malto-oligosyltrehalose
synthase; Provisional.
Length = 1693
Score = 29.3 bits (66), Expect = 0.17
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 25/67 (37%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTI---------------------APVAAPHRCTED 66
RR L DR D+ + V+ + RI+ APV A + ED
Sbjct: 1251 RRSRLPDRSVHDFVRDVL--LGRIDLGGAGHPLRQLVLRFRRRFQQFTAPVMA--KSLED 1306
Query: 67 TTFYNYF 73
T FY Y
Sbjct: 1307 TLFYRYV 1313
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 28.9 bits (65), Expect = 0.20
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 26 GTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
G + +L+D + ++Y VI E R+ I+ D Y IPK
Sbjct: 338 GQKGLTLKDVRKMEYLSQVIDETLRLINISLTVF-REAKTDVEVNGYTIPK 387
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 28.1 bits (62), Expect = 0.37
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 31 SLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKK 77
S ED L Y +AVI E R+ + P+ D Y IP K
Sbjct: 340 SEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAK 386
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 27.4 bits (61), Expect = 0.69
Identities = 16/56 (28%), Positives = 21/56 (37%)
Query: 21 LDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
LD R P+ ED + L Y I+E R+ PV ED Y +
Sbjct: 319 LDRVLQGRPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNA 374
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 27.1 bits (60), Expect = 1.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 31 SLEDRQYLDYAQAVISEVFRINTIAPVAAPHR-CTEDTTFYNYFIPKKGK 79
+ ED + +++ Q VI+E R+ + V HR +D + Y IP K
Sbjct: 336 NWEDYKKMEFTQCVINETLRLGNV--VRFLHRKALKDVRYKGYDIPSGWK 383
>gnl|CDD|132439 TIGR03398, plc_access_R, phospholipase C accessory protein PlcR.
The class of microbial phosphocholine-preferring
phospholipase C enzymes described by model TIGR03396 has
two members in Pseudomonas aeruginosa, one of which
(PlcH) is hemolytic and can hydrolyzes sphingomyelin as
well as phosphatidylcholine. This model describes PlcR,
an accessory protein for PlcH with which it forms a
heterodimer. The member of the family from P.
aeruginosa, although not the members from various
Burkholderia species, is encoded immediately downstream
of phospholipase C.
Length = 141
Score = 26.4 bits (58), Expect = 1.1
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 21 LDSYK-GTRRPS-LEDRQYLDYAQA---VISEVFR 50
LD Y T PS E+ QYL+YAQ VI+EV
Sbjct: 74 LDDYAVQTVGPSPAEEPQYLEYAQQSRKVIAEVQA 108
>gnl|CDD|165152 PHA02789, PHA02789, uncharacterized protein; Provisional.
Length = 173
Score = 26.1 bits (57), Expect = 1.8
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 15 LDNYKCLDSYKGTRRPSLE----DRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFY 70
LD+ + RPS+ D +LD+ + + SE FR+ P ++P+ ED ++
Sbjct: 43 LDDSPIITFDGKDIRPSIAFMIGDEIFLDFYKNIFSEFFRLFRRVPTSSPY---EDLEYF 99
>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional.
Length = 581
Score = 26.0 bits (58), Expect = 1.9
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 14 CLD----NYKCLDS--YKGTRRPSLEDRQYLDYAQAVISEVFR 50
C+D N K L+ Y G R+P L +Y + + V +
Sbjct: 219 CIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQ 261
>gnl|CDD|163532 TIGR03820, lys_2_3_AblA, lysine-2,3-aminomutase. This model
describes lysine-2,3-aminomutase as found along with
beta-lysine acetyltransferase in a two-enzyme pathway
for making the compatible solute
N-epsilon-acetyl-beta-lysine. This compatible solute, or
osmolyte, is known to protect a number of methanogenic
archaea against salt stress. The trusted cutoff
distinguishes a tight clade with essentially full-length
homology from additional homologs that are shorter or
highly diverged in the C-terminal region. All members of
this family have the radical SAM motif CXXXCXXC, while
some but not all have a second copy of the motif in the
C-terminal region.
Length = 417
Score = 25.8 bits (57), Expect = 2.7
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 30 PSLEDRQYLDYAQAVIS-----EVFRINTIAPVAAPHRCTE 65
P L YLD+ + EV RI T PV P R T+
Sbjct: 166 PLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITD 206
>gnl|CDD|232891 TIGR00238, TIGR00238, KamA family protein. This model represents
essentially the whole of E. coli YjeK and of some of its
apparent orthologs. YodO in Bacillus subtilis, a family
member which is longer protein by an additional 100
residues, is characterized as a lysine 2,3-aminomutase
with iron, sulphide and pyridoxal 5'-phosphate groups.
The homolog MJ0634 from M. jannaschii is preceded by
nearly 200 C-terminal residues. This family shows
similarity to molybdenum cofactor biosynthesis protein
MoaA and related proteins. Note that the E. coli homolog
was expressed in E. coli and purified and found not to
display display lysine 2,3-aminomutase activity. Active
site residues are found in 100 residue extension in B.
subtilis. Name changed to KamA family protein [Energy
metabolism, Electron transport].
Length = 331
Score = 24.4 bits (53), Expect = 7.4
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 47 EVFRINTIAPVAAPHRCTE 65
RI T PV P R T+
Sbjct: 192 VRLRIGTRLPVVIPQRITD 210
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 24.4 bits (53), Expect = 8.7
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 2 TKILALK-LHWIECLDNYKCLD-------SYKGTRRP----SLEDRQYLDYAQAVISEVF 49
T ++A+K LH D+ K L + + +RP D + + + +AVI E
Sbjct: 283 TSMMAVKYLH-----DHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETS 337
Query: 50 RINTIAPVAAPHRCTEDTTFYNYFIPK 76
R+ TI + T+D Y IPK
Sbjct: 338 RLATIVN-GVLRKTTQDMELNGYVIPK 363
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.434
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,939,991
Number of extensions: 288172
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 27
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)