RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10395
(79 letters)
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 80.7 bits (200), Expect = 6e-20
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
R P++ DR L +A I EV R+ +AP+ PH+ D++ + + K
Sbjct: 322 RTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDK 370
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 80.0 bits (198), Expect = 1e-19
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 25 KGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
R + +DR L A I+EV R+ + P+A PHR T ++ + Y IP+
Sbjct: 328 ASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLALPHRTTRPSSIFGYDIPE 379
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 79.6 bits (197), Expect = 2e-19
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
R P + D+ L Y A + E R ++ PV PH T +T+ Y IPK
Sbjct: 328 RLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPK 376
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 79.1 bits (196), Expect = 2e-19
Identities = 23/49 (46%), Positives = 28/49 (57%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
RRP L DR L Y +A I E FR ++ P PH T DTT ++IPK
Sbjct: 331 RRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGFYIPK 379
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 78.7 bits (195), Expect = 3e-19
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
R P+++DRQ + Y AV+ E+ R T+ P PH T DT F Y IPK
Sbjct: 316 RIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEATRDTIFRGYLIPK 364
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 78.4 bits (194), Expect = 4e-19
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
RRP + D+ ++ Y AVI EV R I P+ H + D + IPK
Sbjct: 321 RRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIPK 369
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 78.4 bits (194), Expect = 4e-19
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
R P ++DR ++ Y AV+ EV R + P + PH T D F NY IPK
Sbjct: 318 RSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPK 366
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 78.4 bits (194), Expect = 4e-19
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
R+P EDR + Y +AVI E+ R + P++ R +DT F ++F+PK
Sbjct: 317 RQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFFLPK 365
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 78.4 bits (194), Expect = 5e-19
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
+PS +D+ + Y +AV+ EV R I P+ H +ED Y IPK
Sbjct: 322 GKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPK 370
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 77.6 bits (192), Expect = 7e-19
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
R P+L+DR + Y AVI E+ R+ + P PH T+DT F Y IPK
Sbjct: 317 RPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPK 365
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 55.4 bits (134), Expect = 5e-11
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKK 77
+ P ED + + Y +A + E R+ P + T Y +PK
Sbjct: 332 QTPRAEDLRNMPYLKACLKESMRLTPSVP-FTTRTLDKPTVLGEYALPKG 380
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 45.8 bits (109), Expect = 1e-07
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 25 KGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPKK 77
+ Q + +A I E R++ I+ D +Y IP K
Sbjct: 321 HQAQGDMATMLQLVPLLKASIKETLRLHPISV-TLQRYLVNDLVLRDYMIPAK 372
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 45.8 bits (109), Expect = 1e-07
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 33 EDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
Q DYA+ + EV R P R ++D + P+
Sbjct: 266 ALVQQPDYAELFVQEVRRFYPFFPAVVA-RASQDFEWEGMAFPE 308
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 45.0 bits (107), Expect = 2e-07
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 21 LDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
+ + ++ + E + + Y V+ EV R+ +D F + PK
Sbjct: 284 QNKLQLSQELTAETLKKMPYLDQVLQEVLRLIPPVGG-GFRELIQDCQFQGFHFPK 338
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 42.7 bits (101), Expect = 1e-06
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 4/52 (7%)
Query: 28 RRPSLEDR---QYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
P ++ + + EV R P +D + N K
Sbjct: 260 EHPKYKEWLRSGNSREREMFVQEVRRYYPFGPF-LGALVKKDFVWNNCEFKK 310
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 41.9 bits (99), Expect = 3e-06
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 21 LDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
+++ G R + ED + L + VI E R+ V R ++ Y IP
Sbjct: 304 VEAVTGGRPVAFEDVRKLRHTGNVIVEAMRLRPAVWV-LTRRAVAESELGGYRIPA 358
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 41.2 bits (97), Expect = 6e-06
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 21 LDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
+ + G R ++D Q L + I E R + + + ED Y + K
Sbjct: 336 IQTVIGERDIKIDDIQKLKVMENFIYESMRYQPVVDLVM-RKALEDDVIDGYPVKK 390
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 40.7 bits (96), Expect = 9e-06
Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 26 GTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
R S + + + V+ E R++ + + + I +
Sbjct: 292 DGRSVSFHALRQIPQLENVLKETLRLHPPLII-LMRVAKGEFEVQGHRIHE 341
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 38.8 bits (91), Expect = 4e-05
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 25 KGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYN-----YFIPKK 77
G E ++ +V+ E R+ A + T+D Y + +
Sbjct: 296 GGKHLRLEERQKNTPVFDSVLWETLRLTAAALI--TRDVTQDKKICLSNGQEYHLRRG 351
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 38.5 bits (90), Expect = 5e-05
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTF----YNYFIPKK 77
S + L ++I E R+++ + ED T +Y I K
Sbjct: 316 ICLSQAELNDLPVLDSIIKESLRLSSASLN--IRTAKEDFTLHLEDGSYNIRKD 367
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 38.0 bits (89), Expect = 8e-05
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 25 KGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
+ + + + L+ I E R+ + T Y IP
Sbjct: 299 ENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMI-MMRMARTPQTVAGYTIPP 349
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 37.6 bits (88), Expect = 1e-04
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 26 GTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
+ + +A+ E R + + + D +Y +PK
Sbjct: 300 PAQLNYNNVMDEMPFAERCARESIRRDPPLLM-LMRKVMADVKVGSYVVPK 349
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 34.9 bits (81), Expect = 8e-04
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 26 GTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
R ED L Y V+ E R+ A E+T +P
Sbjct: 290 SKRYLDFEDLGRLQYLSQVLKESLRLYPPAWGTF-RLLEEETLIDGVRVPG 339
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 34.9 bits (81), Expect = 8e-04
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 26 GTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFY-NYFIPK 76
PS + + L Y V++E R+ AP + EDT Y + K
Sbjct: 299 VDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFS-LYAKEDTVLGGEYPLEK 349
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 34.4 bits (79), Expect = 0.001
Identities = 6/57 (10%), Positives = 14/57 (24%), Gaps = 7/57 (12%)
Query: 25 KGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFY-----NYFIPK 76
T + +V+SE R+ + D + + +
Sbjct: 315 SQTTTLPQKVLDSTPVLDSVLSESLRLTAAPFI--TREVVVDLAMPMADGREFNLRR 369
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 34.1 bits (78), Expect = 0.002
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 25 KGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTF----YNYFIPK 76
G +LE + + ++V+ E RI P + + T + + K
Sbjct: 314 YGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQY-GKAKSNFTIESHDATFEVKK 368
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 32.9 bits (76), Expect = 0.004
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 36 QYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
+YLD V++E R+ IA C +D FIPK
Sbjct: 332 EYLD---MVVNETLRLFPIAMRL-ERVCKKDVEINGMFIPK 368
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 32.2 bits (73), Expect = 0.008
Identities = 5/53 (9%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTF----YNYFIPK 76
++ + ++ ++V+ E R R +D + +
Sbjct: 334 GELTMGAIEKMELTKSVVYECLRFEPPVTAQY-GRAKKDLVIESHDAAFKVKA 385
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 27.6 bits (62), Expect = 0.31
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 28 RRPSLEDRQY--LDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYNYFIPK 76
RP + R + A A E R+ A + R +P
Sbjct: 239 HRPDWQKRVAESEEAALAAFQEALRLYPPAWIL-TRRLERPLLLGEDRLPP 288
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A
{Vibrio vulnificus}
Length = 648
Score = 26.4 bits (58), Expect = 1.1
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 24 YKGTRRPSLEDRQY--LDYAQAVISEVFRINTIAPVAAPHRCTE 65
Y GTR S Y ++YA+ +++ V + P +E
Sbjct: 300 YDGTRSQSSNSMNYGLVEYARNIVNTVGDVCKDYKQPMPVIISE 343
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics,
PSI-2, protein structure initiative; 3.10A {Vibrio
parahaemolyticus rimd 2210633}
Length = 94
Score = 24.6 bits (53), Expect = 2.9
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 12 IECLDNYKCLDSYKGTRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPHRCTEDTTFYN 71
IE L+ K LD++ + +LED ++L A++ +F + A Y
Sbjct: 12 IEHLEFEKGLDAFSQSWIKALEDSEFL----AILRLLFHHIVTSESAHEFAANGIDRLYK 67
Query: 72 YFIPKKGK 79
+ G
Sbjct: 68 MVESQFGS 75
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 24.6 bits (54), Expect = 3.6
Identities = 3/16 (18%), Positives = 8/16 (50%)
Query: 42 QAVISEVFRINTIAPV 57
+ + + NT+ P+
Sbjct: 124 SQELLDTLQTNTVVPI 139
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I
two-component histidine kinase, phosphoprotein; HET:
ADP; 2.03A {Geobacillus stearothermophilus}
Length = 244
Score = 24.4 bits (54), Expect = 4.0
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 28 RRPSLEDRQYLDYAQAVISEVFRINTI 54
L + YA+ I E+ R I
Sbjct: 40 EEQPLAADKRRQYARIAIEELDRAEAI 66
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA
polymerase III; HET: DGT; 2.39A {Geobacillus
kaustophilus} PDB: 3f2c_A* 3f2d_A*
Length = 1041
Score = 24.6 bits (54), Expect = 4.4
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 12 IECLDNYKCLDSYKGTRRPSLEDRQYLDYAQ 42
+E L++ CLDS + SL +
Sbjct: 1009 LEYLESRGCLDSLPDHNQLSLFS--GGHHHH 1037
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 5.1
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 16 DNYKCL-DSYKG-TRRPSLEDRQYLDYAQAVISEVFRINTIAPVAAPH 61
NYK L K R+PS+ R Y I + R+ V A +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMY-------IEQRDRLYNDNQVFAKY 129
Score = 24.4 bits (52), Expect = 6.1
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 9 LHWIECLDNYKCLDSYKGTRRPSLEDRQY 37
LH +D+Y ++ QY
Sbjct: 445 LH-RSIVDHYNIPKTFDSDDLIPPYLDQY 472
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 23.5 bits (51), Expect = 9.3
Identities = 6/18 (33%), Positives = 8/18 (44%), Gaps = 2/18 (11%)
Query: 55 APVAAPHRCTEDTTFYNY 72
V A + EDT + Y
Sbjct: 383 PAVFA--KAYEDTVLFIY 398
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.434
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,199,759
Number of extensions: 53278
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 38
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)