BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10399
         (442 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
           GN=pol PE=3 SV=1
          Length = 1145

 Score = 34.7 bits (78), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 244 KIDAMSDRLLEMKKFTNNDKMQLNQHTWLDLVACGKE---ISFMWCPSHCGISGNEAVDV 300
           +++ ++D     K  T    ++  Q+ W  ++   +E   + F W P H GI GN+  D 
Sbjct: 673 QVNIVTDSYYCWKNITEGLGLEGPQNPWWPIIQNIREKEIVYFAWVPGHKGIYGNQLADE 732

Query: 301 AAK 303
           AAK
Sbjct: 733 AAK 735


>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
           GN=pol PE=1 SV=1
          Length = 1146

 Score = 34.3 bits (77), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 244 KIDAMSDRLLEMKKFTNNDKMQLNQHTWLDLVACGKE---ISFMWCPSHCGISGNEAVDV 300
           +++ ++D     K  T    ++  Q  W  ++   +E   + F W P H GI GN+  D 
Sbjct: 674 QVNIVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADE 733

Query: 301 AAK 303
           AAK
Sbjct: 734 AAK 736


>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
           GN=pol PE=1 SV=1
          Length = 1146

 Score = 34.3 bits (77), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 244 KIDAMSDRLLEMKKFTNNDKMQLNQHTWLDLVACGKE---ISFMWCPSHCGISGNEAVDV 300
           +++ ++D     K  T    ++  Q  W  ++   +E   + F W P H GI GN+  D 
Sbjct: 674 QVNIVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADE 733

Query: 301 AAK 303
           AAK
Sbjct: 734 AAK 736


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,028,510
Number of Sequences: 539616
Number of extensions: 7134673
Number of successful extensions: 14909
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 14908
Number of HSP's gapped (non-prelim): 7
length of query: 442
length of database: 191,569,459
effective HSP length: 121
effective length of query: 321
effective length of database: 126,275,923
effective search space: 40534571283
effective search space used: 40534571283
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)