BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy104
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 57/69 (82%)
Query: 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGL 70
+T IE +++IEERGVKLRLTVVDTPG+GD+IN + ++ SYID+QF +Y +DESGL
Sbjct: 77 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGL 136
Query: 71 NRKNIVDNR 79
NR++I+DNR
Sbjct: 137 NRRHIIDNR 145
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 57/69 (82%)
Query: 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGL 70
+T IE +++IEERGVKLRLTVVDTPG+GD+IN + ++ SYID+QF +Y +DESGL
Sbjct: 45 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGL 104
Query: 71 NRKNIVDNR 79
NR++I+DNR
Sbjct: 105 NRRHIIDNR 113
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 57/69 (82%)
Query: 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGL 70
+T IE +++IEERGVKLRLTVVDTPG+GD+IN + ++ SYID+QF +Y +DESGL
Sbjct: 77 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGL 136
Query: 71 NRKNIVDNR 79
NR++I+DNR
Sbjct: 137 NRRHIIDNR 145
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 57/69 (82%)
Query: 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGL 70
+T IE +++IEERGVKLRLTVVDTPG+GD+IN + ++ SYID+QF +Y +DESGL
Sbjct: 58 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGL 117
Query: 71 NRKNIVDNR 79
NR++I+DNR
Sbjct: 118 NRRHIIDNR 126
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 6 NNRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 65
++R KT +E+ + I+E GV+L LT+VDTPGFGD++++ W+ YID +F Y N
Sbjct: 65 SHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLN 124
Query: 66 DESGLNRKNIVDNR 79
ES +NR+ + DNR
Sbjct: 125 AESRVNRRQMPDNR 138
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 6 NNRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 65
++R KT +E+ + I+E GV+L LT+VDTPGFGD++++ W+ YID +F Y N
Sbjct: 37 SHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLN 96
Query: 66 DESGLNRKNIVDNR 79
ES +NR+ + DNR
Sbjct: 97 AESRVNRRQMPDNR 110
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 6 NNRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 65
++R KT +E+ + I+E GV+L LT+VDTPGFGD++++ W+ YID +F Y N
Sbjct: 42 SHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLN 101
Query: 66 DESGLNRKNIVDNR 79
ES +NR+ + DNR
Sbjct: 102 AESRVNRRQMPDNR 115
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGL 70
KT I+ IEE GVK++LTV+DTPGFGD IN+E W YI++Q+ ++ +E +
Sbjct: 42 KTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNI 101
Query: 71 NRKN-IVDNR 79
RK I D R
Sbjct: 102 ARKKRIPDTR 111
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 15 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNR 72
++ + D++E V+L+LT+V T GFGD IN E+S++ +ID QF Y +E + R
Sbjct: 81 LQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRR 138
>pdb|2HEU|A Chain A, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
pdb|2HEU|B Chain B, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
pdb|2HEU|C Chain C, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
Length = 401
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 6 NNRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINS 45
N ++ T T+E+ + D E+ K+++ VV+ P G+ + +
Sbjct: 25 NQKKEMTKTLEEITRDFEKENPKIKVKVVNVPNAGEVLKT 64
>pdb|2HQ0|A Chain A, Structure Of Rafe From Streptococcus Pneumoniae
pdb|2I58|A Chain A, Crystal Structure Of Rafe From Streptococcus Pneumoniae
Complexed With Raffinose
pdb|2I58|B Chain B, Crystal Structure Of Rafe From Streptococcus Pneumoniae
Complexed With Raffinose
Length = 388
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 6 NNRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINS 45
N ++ T T+E+ + D E+ K+++ VV+ P G+ + +
Sbjct: 12 NQKKEMTKTLEEITRDFEKENPKIKVKVVNVPNAGEVLKT 51
>pdb|2HFB|A Chain A, Crystal Structure Of Selenomethionine-Labelled Rafe From
Streptococcus Pneumoniae
pdb|2HFB|B Chain B, Crystal Structure Of Selenomethionine-Labelled Rafe From
Streptococcus Pneumoniae
Length = 409
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 6 NNRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINS 45
N ++ T T+E+ + D E+ K+++ VV+ P G+ + +
Sbjct: 30 NQKKEXTKTLEEITRDFEKENPKIKVKVVNVPNAGEVLKT 69
>pdb|1JHS|A Chain A, Protein Mog1 E65a Mutant
Length = 188
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 31 LTVVDTPGFGDSINSEESWRACCSYIDDQF-RQYFNDESGLNRKNIVDNREVVDKS 85
+T V PGF D+ E Y++ + + F D N IVD E VDKS
Sbjct: 13 ITTVVPPGFIDASTLREVPDTQAVYVNSRRDEEEFEDGLATNESIIVDLLETVDKS 68
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 5 GNNRQGKTTTIEKKSMDIEERGVKLRLTVVDT 36
G N GKTTTI K + E++G + L DT
Sbjct: 100 GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 131
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 5 GNNRQGKTTTIEKKSMDIEERGVKLRLTVVDT 36
G N GKTTTI K + E++G + L DT
Sbjct: 105 GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 136
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 5 GNNRQGKTTTIEKKSMDIEERGVKLRLTVVDT 36
G N GKTTTI K + E++G + L DT
Sbjct: 106 GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 137
>pdb|2F1R|A Chain A, Crystal Structure Of Molybdopterin-guanine Biosynthesis
Protein B (mobb)
pdb|2F1R|B Chain B, Crystal Structure Of Molybdopterin-guanine Biosynthesis
Protein B (mobb)
Length = 171
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 5 GNNRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD-SINSE--ESWR 50
G + GKTT I + + ERG LR+ VV GD I+ E +SW+
Sbjct: 9 GTSDSGKTTLITRMMPILRERG--LRVAVVKRHAHGDFEIDKEGKDSWK 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,683,849
Number of Sequences: 62578
Number of extensions: 99777
Number of successful extensions: 270
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 26
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)