Query psy104
Match_columns 86
No_of_seqs 106 out of 514
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:54:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5d_A Septin-7; GTP-binding p 99.8 1.6E-18 5.6E-23 121.7 7.7 78 8-85 44-121 (274)
2 2qag_A Septin-2, protein NEDD5 99.5 9.6E-15 3.3E-19 106.9 6.6 76 10-85 76-151 (361)
3 2qag_B Septin-6, protein NEDD5 99.2 3.8E-11 1.3E-15 90.6 7.3 71 15-85 81-153 (427)
4 2qag_C Septin-7; cell cycle, c 99.1 1.1E-10 3.7E-15 87.6 5.8 74 11-84 70-143 (418)
5 2qnr_A Septin-2, protein NEDD5 99.1 1.1E-10 3.8E-15 83.4 5.5 74 11-84 58-131 (301)
6 3sop_A Neuronal-specific septi 99.0 2.5E-10 8.6E-15 80.8 5.2 69 16-84 47-116 (270)
7 3cnl_A YLQF, putative uncharac 95.4 0.0073 2.5E-07 42.1 2.3 41 30-70 145-198 (262)
8 1h65_A Chloroplast outer envel 94.1 0.038 1.3E-06 37.8 3.1 21 21-43 81-101 (270)
9 3def_A T7I23.11 protein; chlor 89.3 0.37 1.3E-05 32.7 3.7 20 21-42 78-97 (262)
10 4dhe_A Probable GTP-binding pr 87.8 0.83 2.8E-05 29.4 4.5 14 29-42 79-92 (223)
11 1wf3_A GTP-binding protein; GT 86.5 1 3.4E-05 31.6 4.6 14 29-42 55-68 (301)
12 1svi_A GTP-binding protein YSX 86.4 0.91 3.1E-05 28.4 4.0 15 30-44 70-84 (195)
13 3tw8_B RAS-related protein RAB 85.4 2.1 7.2E-05 26.0 5.2 30 11-40 40-69 (181)
14 3lxw_A GTPase IMAP family memb 85.2 0.5 1.7E-05 31.9 2.4 14 29-42 70-83 (247)
15 3pqc_A Probable GTP-binding pr 85.2 1.2 4E-05 27.7 4.0 15 30-44 69-83 (195)
16 3lxx_A GTPase IMAP family memb 85.1 0.41 1.4E-05 31.7 1.9 15 29-43 78-92 (239)
17 3iev_A GTP-binding protein ERA 84.9 1.4 4.9E-05 30.7 4.7 32 29-64 59-90 (308)
18 2g6b_A RAS-related protein RAB 84.5 2.5 8.6E-05 25.8 5.3 31 11-41 42-72 (180)
19 1z0j_A RAB-22, RAS-related pro 83.9 3.2 0.00011 24.9 5.5 21 21-41 47-67 (170)
20 2x2e_A Dynamin-1; nitration, h 82.7 1.2 4E-05 31.6 3.6 14 29-42 130-143 (353)
21 1wms_A RAB-9, RAB9, RAS-relate 82.5 3.4 0.00011 25.1 5.3 29 12-40 39-67 (177)
22 2y8e_A RAB-protein 6, GH09086P 82.3 3.6 0.00012 24.9 5.4 29 12-40 46-74 (179)
23 2bme_A RAB4A, RAS-related prot 81.8 4.6 0.00016 24.7 5.8 30 11-40 41-70 (186)
24 1ek0_A Protein (GTP-binding pr 81.7 3.9 0.00013 24.4 5.3 19 22-40 45-63 (170)
25 3tkl_A RAS-related protein RAB 81.4 3.7 0.00013 25.4 5.3 29 12-40 48-76 (196)
26 1jwy_B Dynamin A GTPase domain 80.3 1.3 4.3E-05 30.3 3.0 13 29-41 131-143 (315)
27 1zbd_A Rabphilin-3A; G protein 80.3 4 0.00014 25.6 5.2 30 12-41 40-69 (203)
28 2aka_B Dynamin-1; fusion prote 80.0 2.2 7.5E-05 28.8 4.1 14 29-42 125-138 (299)
29 3t34_A Dynamin-related protein 79.9 1.8 6.3E-05 30.6 3.7 35 30-65 137-171 (360)
30 1z08_A RAS-related protein RAB 79.9 3 0.0001 25.1 4.3 20 21-40 47-66 (170)
31 1z2a_A RAS-related protein RAB 79.8 2.5 8.7E-05 25.3 4.0 20 22-41 47-66 (168)
32 2xtp_A GTPase IMAP family memb 79.6 0.77 2.6E-05 30.7 1.6 15 29-43 71-85 (260)
33 1z0f_A RAB14, member RAS oncog 78.9 3.8 0.00013 24.8 4.6 21 21-41 56-76 (179)
34 1r2q_A RAS-related protein RAB 78.1 5.9 0.0002 23.6 5.3 21 21-41 47-67 (170)
35 1vg8_A RAS-related protein RAB 78.0 4.3 0.00015 25.4 4.8 30 12-41 40-69 (207)
36 2oil_A CATX-8, RAS-related pro 77.8 5.8 0.0002 24.6 5.4 21 21-41 66-86 (193)
37 3cph_A RAS-related protein SEC 77.7 3.8 0.00013 25.8 4.5 21 21-41 61-81 (213)
38 3t5g_A GTP-binding protein RHE 77.2 9.9 0.00034 23.1 6.3 22 21-42 46-67 (181)
39 1x3s_A RAS-related protein RAB 76.7 6.5 0.00022 24.1 5.3 21 21-41 56-76 (195)
40 1g16_A RAS-related protein SEC 76.3 3.2 0.00011 24.9 3.6 21 21-41 44-64 (170)
41 2ew1_A RAS-related protein RAB 76.0 5.7 0.0002 25.4 5.0 29 12-40 58-86 (201)
42 2bcg_Y Protein YP2, GTP-bindin 75.7 4.7 0.00016 25.4 4.5 21 21-41 49-69 (206)
43 2gf9_A RAS-related protein RAB 75.5 7.2 0.00025 24.1 5.3 21 21-41 63-83 (189)
44 2fn4_A P23, RAS-related protei 75.0 7.3 0.00025 23.5 5.1 21 21-41 49-69 (181)
45 2fu5_C RAS-related protein RAB 75.0 3.6 0.00012 25.3 3.7 21 21-41 49-69 (183)
46 1z06_A RAS-related protein RAB 74.6 5.6 0.00019 24.7 4.6 19 22-40 62-80 (189)
47 3clv_A RAB5 protein, putative; 74.6 4 0.00014 25.0 3.8 12 29-40 93-104 (208)
48 3vqt_A RF-3, peptide chain rel 74.1 1.2 4.1E-05 34.0 1.5 30 12-43 85-114 (548)
49 2efe_B Small GTP-binding prote 73.5 5.8 0.0002 24.1 4.4 20 22-41 54-73 (181)
50 2fg5_A RAB-22B, RAS-related pr 73.1 6.9 0.00024 24.4 4.8 31 11-41 54-84 (192)
51 2il1_A RAB12; G-protein, GDP, 73.0 4.9 0.00017 25.2 4.0 20 21-40 67-86 (192)
52 2cxx_A Probable GTP-binding pr 72.8 4.8 0.00017 24.7 3.9 14 30-43 45-58 (190)
53 3h2y_A GTPase family protein; 72.6 1.2 4.2E-05 32.1 1.2 12 31-42 213-224 (368)
54 3q85_A GTP-binding protein REM 72.3 5.6 0.00019 23.9 4.1 22 21-42 43-64 (169)
55 3k53_A Ferrous iron transport 72.0 9.2 0.00031 25.7 5.5 15 30-44 51-65 (271)
56 2ce2_X GTPase HRAS; signaling 71.5 8 0.00027 22.7 4.6 21 21-41 43-63 (166)
57 2p5s_A RAS and EF-hand domain 71.2 5.3 0.00018 25.1 3.9 21 21-41 69-89 (199)
58 2erx_A GTP-binding protein DI- 71.2 9.5 0.00033 22.7 5.0 19 23-41 45-63 (172)
59 1kao_A RAP2A; GTP-binding prot 71.2 8.2 0.00028 22.8 4.6 21 21-41 43-63 (167)
60 3iby_A Ferrous iron transport 71.1 7.9 0.00027 26.2 5.0 15 30-44 49-63 (256)
61 3zvr_A Dynamin-1; hydrolase, D 71.0 3.9 0.00013 32.8 3.8 13 30-42 151-163 (772)
62 1mh1_A RAC1; GTP-binding, GTPa 70.9 7.3 0.00025 23.7 4.4 20 22-41 46-65 (186)
63 2yc2_C IFT27, small RAB-relate 70.4 3.6 0.00012 25.7 2.9 13 28-40 72-84 (208)
64 3gj0_A GTP-binding nuclear pro 70.2 5.8 0.0002 25.4 4.0 26 15-40 50-75 (221)
65 2o52_A RAS-related protein RAB 70.1 4.9 0.00017 25.4 3.5 20 21-40 66-85 (200)
66 4dsu_A GTPase KRAS, isoform 2B 70.0 8.5 0.00029 23.4 4.6 21 21-41 44-64 (189)
67 3ec1_A YQEH GTPase; atnos1, at 70.0 1.5 5.3E-05 31.5 1.2 12 31-42 214-225 (369)
68 3bc1_A RAS-related protein RAB 68.9 9.9 0.00034 23.1 4.7 14 28-41 69-82 (195)
69 1u8z_A RAS-related protein RAL 68.7 9.9 0.00034 22.4 4.6 20 22-41 45-64 (168)
70 2hup_A RAS-related protein RAB 68.3 6.6 0.00022 24.9 3.9 20 21-40 70-89 (201)
71 3a1s_A Iron(II) transport prot 68.0 14 0.00047 25.0 5.7 15 29-43 52-66 (258)
72 2a5j_A RAS-related protein RAB 67.9 5.9 0.0002 24.6 3.6 20 22-41 63-82 (191)
73 2q3h_A RAS homolog gene family 67.9 10 0.00035 23.6 4.8 21 21-41 60-80 (201)
74 3t1o_A Gliding protein MGLA; G 67.0 3 0.0001 25.7 2.0 29 12-40 56-85 (198)
75 3l0i_B RAS-related protein RAB 66.7 3.8 0.00013 25.8 2.5 20 21-40 74-93 (199)
76 3kkq_A RAS-related protein M-R 66.5 18 0.0006 22.0 5.6 21 21-41 58-78 (183)
77 2nzj_A GTP-binding protein REM 66.0 5.2 0.00018 24.1 2.9 19 23-41 46-64 (175)
78 2a9k_A RAS-related protein RAL 65.8 12 0.0004 22.6 4.6 20 22-41 59-78 (187)
79 1puj_A YLQF, conserved hypothe 65.7 2.9 9.8E-05 29.0 1.8 13 30-42 166-178 (282)
80 3con_A GTPase NRAS; structural 65.3 12 0.00041 23.0 4.6 20 21-40 61-80 (190)
81 3cb4_D GTP-binding protein LEP 64.8 6 0.0002 30.6 3.6 18 25-42 67-84 (599)
82 2atv_A RERG, RAS-like estrogen 64.8 14 0.00049 22.9 5.0 20 22-41 69-88 (196)
83 3cpj_B GTP-binding protein YPT 64.4 6.1 0.00021 25.4 3.2 20 22-41 55-74 (223)
84 2bov_A RAla, RAS-related prote 63.6 16 0.00053 22.6 5.0 20 22-41 55-74 (206)
85 4dkx_A RAS-related protein RAB 63.5 7.4 0.00025 25.7 3.5 31 10-40 43-73 (216)
86 2qu8_A Putative nucleolar GTP- 63.0 4.4 0.00015 26.3 2.3 13 29-41 76-88 (228)
87 4fn5_A EF-G 1, elongation fact 62.6 4.8 0.00017 31.4 2.8 33 10-42 61-98 (709)
88 1f5n_A Interferon-induced guan 62.1 3.2 0.00011 32.3 1.6 15 29-43 91-105 (592)
89 3qq5_A Small GTP-binding prote 62.1 3.5 0.00012 30.5 1.8 13 30-42 84-96 (423)
90 4gzl_A RAS-related C3 botulinu 61.8 10 0.00034 24.0 3.8 21 21-41 70-90 (204)
91 3reg_A RHO-like small GTPase; 61.4 20 0.00069 22.1 5.2 20 21-40 63-82 (194)
92 2f7s_A C25KG, RAS-related prot 61.1 10 0.00035 24.0 3.8 12 28-39 83-94 (217)
93 2wjg_A FEOB, ferrous iron tran 60.5 13 0.00045 22.7 4.1 14 29-42 54-67 (188)
94 2gf0_A GTP-binding protein DI- 60.5 14 0.00048 22.7 4.3 20 22-41 49-68 (199)
95 2ywe_A GTP-binding protein LEP 60.5 5 0.00017 31.1 2.5 18 25-42 69-86 (600)
96 2fv8_A H6, RHO-related GTP-bin 60.3 14 0.00048 23.3 4.3 20 22-41 66-85 (207)
97 3j2k_7 ERF3, eukaryotic polype 60.2 9.7 0.00033 27.9 3.9 28 13-42 81-108 (439)
98 2j1l_A RHO-related GTP-binding 59.7 14 0.00049 23.5 4.3 20 21-40 74-93 (214)
99 1c1y_A RAS-related protein RAP 59.1 12 0.00041 22.1 3.7 20 22-41 44-63 (167)
100 1upt_A ARL1, ADP-ribosylation 56.1 8 0.00027 23.1 2.5 26 12-41 38-63 (171)
101 2atx_A Small GTP binding prote 55.8 23 0.0008 21.7 4.8 20 22-41 59-78 (194)
102 2hxs_A RAB-26, RAS-related pro 55.6 7.6 0.00026 23.4 2.3 16 26-41 53-68 (178)
103 1ksh_A ARF-like protein 2; sma 55.2 10 0.00036 23.2 3.0 27 10-40 47-73 (186)
104 2iwr_A Centaurin gamma 1; ANK 55.1 20 0.00068 21.6 4.3 19 22-40 47-65 (178)
105 3c5c_A RAS-like protein 12; GD 54.7 23 0.0008 21.9 4.6 20 22-41 62-81 (187)
106 3tr5_A RF-3, peptide chain rel 53.9 6.8 0.00023 29.7 2.2 14 29-42 82-95 (528)
107 2j0v_A RAC-like GTP-binding pr 53.2 16 0.00056 22.9 3.7 20 22-41 50-69 (212)
108 1mky_A Probable GTP-binding pr 53.0 14 0.00048 26.8 3.7 12 30-41 50-61 (439)
109 2dyk_A GTP-binding protein; GT 52.8 11 0.00036 22.3 2.6 12 30-41 50-61 (161)
110 2qpt_A EH domain-containing pr 52.8 10 0.00035 28.8 3.1 12 30-41 155-166 (550)
111 3oes_A GTPase rhebl1; small GT 52.8 36 0.0012 21.1 5.3 19 23-41 66-84 (201)
112 2j69_A Bacterial dynamin-like 52.8 3.1 0.00011 32.5 0.2 13 30-42 175-187 (695)
113 2gco_A H9, RHO-related GTP-bin 52.7 17 0.00057 22.8 3.7 20 22-41 66-85 (201)
114 1m2o_B GTP-binding protein SAR 52.6 12 0.00041 23.4 3.0 14 29-42 67-80 (190)
115 1m7b_A RND3/RHOE small GTP-bin 52.4 20 0.00067 22.0 3.9 20 21-40 47-66 (184)
116 3ihw_A Centg3; RAS, centaurin, 52.1 23 0.00078 21.9 4.3 22 20-41 58-79 (184)
117 3i8s_A Ferrous iron transport 50.9 14 0.00048 25.0 3.3 14 30-43 51-64 (274)
118 4djt_A GTP-binding nuclear pro 50.3 13 0.00046 23.4 2.9 31 12-42 43-74 (218)
119 2rdo_7 EF-G, elongation factor 50.0 14 0.00049 28.9 3.5 16 26-41 79-94 (704)
120 3q72_A GTP-binding protein RAD 50.0 27 0.00093 20.6 4.2 21 21-41 41-61 (166)
121 2p67_A LAO/AO transport system 49.8 5.2 0.00018 28.2 0.9 14 29-42 149-162 (341)
122 1ky3_A GTP-binding protein YPT 48.2 11 0.00039 22.6 2.3 15 26-40 55-69 (182)
123 4dcu_A GTP-binding protein ENG 47.5 12 0.00042 27.3 2.7 13 29-41 71-83 (456)
124 2h57_A ADP-ribosylation factor 47.1 16 0.00056 22.4 2.9 28 10-41 52-79 (190)
125 2f9l_A RAB11B, member RAS onco 46.7 28 0.00097 21.6 4.1 20 21-40 46-65 (199)
126 1oix_A RAS-related protein RAB 46.5 37 0.0013 21.1 4.6 23 19-41 68-90 (191)
127 3gee_A MNME, tRNA modification 46.0 9.8 0.00033 28.5 2.0 13 29-41 281-293 (476)
128 2wkq_A NPH1-1, RAS-related C3 45.7 29 0.001 23.2 4.2 21 21-41 195-215 (332)
129 1gwn_A RHO-related GTP-binding 43.8 29 0.00098 22.0 3.8 20 21-40 68-87 (205)
130 3bwd_D RAC-like GTP-binding pr 43.6 7.3 0.00025 23.6 0.8 18 24-41 51-68 (182)
131 1n0u_A EF-2, elongation factor 43.6 14 0.00047 29.6 2.6 17 26-42 95-111 (842)
132 3p32_A Probable GTPase RV1496/ 43.2 9.5 0.00032 27.0 1.5 13 29-41 172-184 (355)
133 3j25_A Tetracycline resistance 41.8 5.3 0.00018 30.9 -0.1 27 14-42 54-80 (638)
134 2wji_A Ferrous iron transport 41.4 15 0.00052 22.2 2.1 14 29-42 50-63 (165)
135 2qm8_A GTPase/ATPase; G protei 40.8 11 0.00039 26.6 1.6 14 29-42 148-161 (337)
136 1r8s_A ADP-ribosylation factor 40.0 13 0.00043 22.1 1.5 13 29-41 44-56 (164)
137 2xex_A Elongation factor G; GT 39.6 16 0.00053 28.6 2.3 14 29-42 75-88 (693)
138 2h5e_A Peptide chain release f 38.9 16 0.00056 27.6 2.2 14 29-42 82-95 (529)
139 1ega_A Protein (GTP-binding pr 38.5 15 0.00051 25.3 1.9 12 29-40 56-67 (301)
140 2fh5_B SR-beta, signal recogni 38.5 13 0.00046 23.3 1.5 14 28-41 53-66 (214)
141 2c78_A Elongation factor TU-A; 38.1 15 0.0005 26.4 1.8 14 29-42 75-88 (405)
142 2elf_A Protein translation elo 37.4 12 0.0004 26.9 1.2 13 30-42 61-73 (370)
143 3cbq_A GTP-binding protein REM 37.0 61 0.0021 20.1 4.5 19 23-41 66-84 (195)
144 3q3j_B RHO-related GTP-binding 36.8 39 0.0013 21.4 3.6 20 21-40 67-86 (214)
145 4bas_A ADP-ribosylation factor 36.8 17 0.00057 22.3 1.7 14 28-41 62-75 (199)
146 2x77_A ADP-ribosylation factor 36.7 19 0.00065 22.0 2.0 14 28-41 65-78 (189)
147 1zj6_A ADP-ribosylation factor 36.7 19 0.00064 22.1 2.0 13 29-41 60-72 (187)
148 3r7w_A Gtpase1, GTP-binding pr 36.1 30 0.001 23.7 3.1 29 10-41 36-64 (307)
149 3q5d_A Atlastin-1; G protein, 35.7 18 0.0006 27.1 2.0 19 25-43 136-154 (447)
150 2h17_A ADP-ribosylation factor 35.7 17 0.00058 22.2 1.6 13 29-41 65-77 (181)
151 1ei9_A Palmitoyl protein thioe 35.1 26 0.00088 23.7 2.6 28 33-60 8-35 (279)
152 1moz_A ARL1, ADP-ribosylation 35.0 16 0.00055 22.1 1.4 13 29-41 62-74 (183)
153 1f6b_A SAR1; gtpases, N-termin 35.0 14 0.0005 23.2 1.2 13 29-41 69-81 (198)
154 1w7j_A Myosin VA; motor protei 33.9 60 0.002 26.1 4.8 35 28-64 430-465 (795)
155 3lwx_A NADH:ubiquinone oxidore 33.7 11 0.00039 25.2 0.6 25 22-46 104-132 (199)
156 2b6h_A ADP-ribosylation factor 33.5 21 0.00072 22.2 1.8 13 29-41 73-85 (192)
157 2gj8_A MNME, tRNA modification 33.4 61 0.0021 19.6 4.0 12 30-41 53-64 (172)
158 3dz8_A RAS-related protein RAB 33.4 5.3 0.00018 24.9 -1.1 15 25-39 68-82 (191)
159 1kk1_A EIF2gamma; initiation o 33.1 22 0.00077 25.4 2.1 13 28-40 82-94 (410)
160 4anj_A Unconventional myosin-V 32.9 61 0.0021 27.0 4.8 35 29-65 450-485 (1052)
161 1pui_A ENGB, probable GTP-bind 32.7 21 0.00072 22.2 1.7 12 30-41 73-84 (210)
162 1fzq_A ADP-ribosylation factor 32.5 24 0.00084 21.6 2.0 13 28-40 59-71 (181)
163 2hjg_A GTP-binding protein ENG 32.3 30 0.001 25.0 2.7 12 29-40 51-62 (436)
164 1f60_A Elongation factor EEF1A 32.2 25 0.00087 25.8 2.3 14 29-42 85-98 (458)
165 1lkx_A Myosin IE heavy chain; 32.1 67 0.0023 25.4 4.8 36 28-65 379-415 (697)
166 3geh_A MNME, tRNA modification 32.1 15 0.00052 27.3 1.1 13 30-42 273-285 (462)
167 1zd9_A ADP-ribosylation factor 32.0 21 0.00071 22.0 1.6 13 28-40 66-78 (188)
168 1i84_S Smooth muscle myosin he 31.5 71 0.0024 26.5 5.0 36 28-65 457-493 (1184)
169 1jny_A EF-1-alpha, elongation 31.5 19 0.00066 26.1 1.5 14 29-42 84-97 (435)
170 2v26_A Myosin VI; calmodulin-b 31.4 70 0.0024 25.7 4.8 35 28-64 445-480 (784)
171 3th5_A RAS-related C3 botulinu 37.5 10 0.00035 23.8 0.0 19 23-41 72-90 (204)
172 3sjy_A Translation initiation 31.2 25 0.00087 25.1 2.1 14 28-41 74-87 (403)
173 2lkc_A Translation initiation 31.0 22 0.00074 21.3 1.5 12 30-41 56-67 (178)
174 1dar_A EF-G, elongation factor 30.4 26 0.00089 27.3 2.2 13 29-41 77-89 (691)
175 1yrb_A ATP(GTP)binding protein 29.9 23 0.00078 23.1 1.6 13 29-41 109-121 (262)
176 1s0u_A EIF-2-gamma, translatio 29.1 29 0.00098 24.9 2.1 13 28-40 80-92 (408)
177 2www_A Methylmalonic aciduria 29.1 24 0.00084 24.9 1.7 13 29-41 167-179 (349)
178 1jal_A YCHF protein; nucleotid 29.0 21 0.0007 25.9 1.3 14 28-41 65-78 (363)
179 2dfs_A Myosin-5A; myosin-V, in 28.9 67 0.0023 26.7 4.4 35 28-64 430-465 (1080)
180 1zun_B Sulfate adenylate trans 28.9 28 0.00096 25.2 2.0 14 29-42 104-117 (434)
181 1kk8_A Myosin heavy chain, str 28.9 80 0.0027 25.6 4.8 35 28-64 453-488 (837)
182 3p26_A Elongation factor 1 alp 28.5 25 0.00086 25.9 1.7 14 29-42 111-124 (483)
183 2ycu_A Non muscle myosin 2C, a 28.5 78 0.0027 26.0 4.7 35 28-64 426-461 (995)
184 1r5b_A Eukaryotic peptide chai 28.1 24 0.0008 26.0 1.5 15 29-43 121-135 (467)
185 1g8x_A Myosin II heavy chain f 27.7 84 0.0029 25.9 4.8 35 28-64 447-482 (1010)
186 1d2e_A Elongation factor TU (E 27.3 26 0.0009 25.0 1.6 13 29-41 66-78 (397)
187 1nrj_B SR-beta, signal recogni 27.1 21 0.00074 22.4 1.0 14 28-41 54-67 (218)
188 1g7s_A Translation initiation 27.1 30 0.001 26.6 2.0 13 30-42 71-83 (594)
189 1xzp_A Probable tRNA modificat 26.0 80 0.0027 23.5 4.1 25 12-40 278-302 (482)
190 1wxq_A GTP-binding protein; st 26.0 34 0.0012 24.8 2.1 13 28-40 70-82 (397)
191 1on3_A Methylmalonyl-COA carbo 25.9 43 0.0015 25.5 2.7 38 25-65 360-397 (523)
192 3dp5_A OMCF, cytochrome C fami 25.8 35 0.0012 19.3 1.7 25 35-60 73-98 (99)
193 3mca_A HBS1, elongation factor 25.7 8.4 0.00029 29.6 -1.3 17 29-45 255-271 (592)
194 4db1_A Myosin-7; S1DC, cardiac 25.6 1.1E+02 0.0037 24.7 5.0 34 29-64 455-489 (783)
195 2kp7_A Crossover junction endo 25.5 66 0.0023 18.6 2.9 23 36-67 63-85 (87)
196 2ged_A SR-beta, signal recogni 24.8 15 0.00052 22.5 -0.0 15 28-42 90-104 (193)
197 2e87_A Hypothetical protein PH 24.1 45 0.0015 23.3 2.3 13 29-41 214-226 (357)
198 3izq_1 HBS1P, elongation facto 24.0 38 0.0013 26.0 2.1 14 29-42 245-258 (611)
199 3o47_A ADP-ribosylation factor 23.6 37 0.0013 23.6 1.8 12 29-40 209-220 (329)
200 2dby_A GTP-binding protein; GD 23.3 30 0.001 24.9 1.3 15 27-41 67-81 (368)
201 3llu_A RAS-related GTP-binding 23.2 19 0.00063 22.5 0.1 16 26-41 66-81 (196)
202 4a18_M RPL22, ribosomal protei 22.7 70 0.0024 19.9 2.7 34 48-82 21-58 (118)
203 3lcr_A Tautomycetin biosynthet 22.6 1.3E+02 0.0046 20.2 4.5 29 29-57 110-138 (319)
204 1vrg_A Propionyl-COA carboxyla 22.4 56 0.0019 25.0 2.7 37 25-64 364-400 (527)
205 4a9a_A Ribosome-interacting GT 22.2 32 0.0011 25.0 1.2 12 29-40 119-130 (376)
206 1w9i_A Myosin II heavy chain; 22.0 1.4E+02 0.0048 24.0 5.0 35 28-64 447-482 (770)
207 4ido_A Atlastin-1; GTPase, GTP 21.9 51 0.0017 24.8 2.3 20 25-44 136-155 (457)
208 2xmz_A Hydrolase, alpha/beta h 21.8 1.4E+02 0.0047 18.8 4.3 17 29-45 43-59 (269)
209 2blf_B SORB, sulfite\:cytochro 21.8 37 0.0013 18.8 1.2 21 39-60 61-81 (81)
210 2qtf_A Protein HFLX, GTP-bindi 21.7 44 0.0015 23.8 1.9 14 29-42 226-239 (364)
211 3szr_A Interferon-induced GTP- 21.4 1E+02 0.0034 23.6 3.9 13 30-42 148-160 (608)
212 3u9r_B MCC beta, methylcrotony 21.3 32 0.0011 26.6 1.2 36 25-63 386-421 (555)
213 3ibt_A 1H-3-hydroxy-4-oxoquino 21.2 1.5E+02 0.0052 18.1 4.6 16 29-44 48-63 (264)
214 3b1v_A Ferrous iron uptake tra 21.2 46 0.0016 22.6 1.9 15 28-42 48-62 (272)
215 1zo1_I IF2, translation initia 21.1 26 0.0009 26.5 0.6 14 30-43 52-65 (501)
216 1cip_A Protein (guanine nucleo 21.1 57 0.002 23.2 2.4 26 11-40 179-204 (353)
217 1wb1_A Translation elongation 20.8 38 0.0013 25.1 1.4 13 29-41 73-85 (482)
218 1bh9_A TAFII18; histone fold, 20.7 96 0.0033 15.7 2.6 25 38-62 12-37 (45)
219 1zcb_A G alpha I/13; GTP-bindi 20.6 72 0.0025 22.8 2.9 26 11-40 187-212 (362)
220 2dst_A Hypothetical protein TT 20.4 1.3E+02 0.0044 17.0 4.6 19 29-47 43-61 (131)
221 1gks_A Cytochrome C551; haloph 20.2 25 0.00086 18.9 0.3 24 35-59 54-77 (78)
No 1
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.76 E-value=1.6e-18 Score=121.72 Aligned_cols=78 Identities=42% Similarity=0.739 Sum_probs=67.8
Q ss_pred CCCcceEEEEEEEEEeecCeEEEEEEEeCCCCCCccCCccchhHHHHHHHHHHHHhhhhhcCCccCCCCCCeeEEeec
Q psy104 8 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNREVVDKS 85 (86)
Q Consensus 8 ~~~~t~~I~~~~~~l~e~~~~l~LtIidTpGfGd~i~n~~~~~~i~~yI~~qf~~yl~eE~~i~R~~~~D~RVH~Cl~ 85 (86)
+..+|+.+..++..+.++|.+++|+|+||||||+.+++..+|.++.+||++||+.||.+|.++.|..+.|+|+||||-
T Consensus 44 ~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~ 121 (274)
T 3t5d_A 44 RIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLY 121 (274)
T ss_dssp -----CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEE
T ss_pred ccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEE
Confidence 346778888888888889999999999999999999999999999999999999999999999999999999999983
No 2
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=9.6e-15 Score=106.95 Aligned_cols=76 Identities=55% Similarity=0.915 Sum_probs=50.4
Q ss_pred CcceEEEEEEEEEeecCeEEEEEEEeCCCCCCccCCccchhHHHHHHHHHHHHhhhhhcCCccCCCCCCeeEEeec
Q psy104 10 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNREVVDKS 85 (86)
Q Consensus 10 ~~t~~I~~~~~~l~e~~~~l~LtIidTpGfGd~i~n~~~~~~i~~yI~~qf~~yl~eE~~i~R~~~~D~RVH~Cl~ 85 (86)
.+|..+....+.+..++..++|+|+||||+|+.+++..+|.++.+||++||+.|+.++.++.|..+.|+|||||+.
T Consensus 76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy 151 (361)
T 2qag_A 76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFY 151 (361)
T ss_dssp --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEE
T ss_pred CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEE
Confidence 3567777777777888999999999999999999999999999999999999999999999999999999999973
No 3
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=3.8e-11 Score=90.56 Aligned_cols=71 Identities=37% Similarity=0.644 Sum_probs=55.6
Q ss_pred EEEEEEEEeecCeEEEEEEEeCCCCCCccCCccchhHHHHHHHHHHHHhhhhhcCCccC--CCCCCeeEEeec
Q psy104 15 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRK--NIVDNREVVDKS 85 (86)
Q Consensus 15 I~~~~~~l~e~~~~l~LtIidTpGfGd~i~n~~~~~~i~~yI~~qf~~yl~eE~~i~R~--~~~D~RVH~Cl~ 85 (86)
.....+.+++.++...|||+|+||||+.+++..+|.+|.+||..+|+.||.++.++.|+ .+.|.|||||+.
T Consensus 81 ~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~ 153 (427)
T 2qag_B 81 LQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLY 153 (427)
T ss_dssp EEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEE
T ss_pred EeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEE
Confidence 44444566777888899999999999999988999999999999999999999999885 679999999973
No 4
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.09 E-value=1.1e-10 Score=87.55 Aligned_cols=74 Identities=43% Similarity=0.780 Sum_probs=47.1
Q ss_pred cceEEEEEEEEEeecCeEEEEEEEeCCCCCCccCCccchhHHHHHHHHHHHHhhhhhcCCccCCCCCCeeEEee
Q psy104 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNREVVDK 84 (86)
Q Consensus 11 ~t~~I~~~~~~l~e~~~~l~LtIidTpGfGd~i~n~~~~~~i~~yI~~qf~~yl~eE~~i~R~~~~D~RVH~Cl 84 (86)
+|..+....+.+++.++...|+|+||||||...++..+|.++.+||+++|+.|+.++..+.|..+.|.|+||||
T Consensus 70 ~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL 143 (418)
T 2qag_C 70 KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL 143 (418)
T ss_dssp -CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEE
T ss_pred cceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence 34444444445567788889999999999999888889999999999999999999999999989999999997
No 5
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.09 E-value=1.1e-10 Score=83.44 Aligned_cols=74 Identities=57% Similarity=0.952 Sum_probs=49.1
Q ss_pred cceEEEEEEEEEeecCeEEEEEEEeCCCCCCccCCccchhHHHHHHHHHHHHhhhhhcCCccCCCCCCeeEEee
Q psy104 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNREVVDK 84 (86)
Q Consensus 11 ~t~~I~~~~~~l~e~~~~l~LtIidTpGfGd~i~n~~~~~~i~~yI~~qf~~yl~eE~~i~R~~~~D~RVH~Cl 84 (86)
++..+....+.+++++..+.|+|.||||||+..++...|.++.++|.++++.|+.+++++.|+++.|.|+|+||
T Consensus 58 ~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll 131 (301)
T 2qnr_A 58 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCF 131 (301)
T ss_dssp -------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEE
T ss_pred CcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhhee
Confidence 34444445556677888999999999999999887778999999999999999999999999999999999987
No 6
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.03 E-value=2.5e-10 Score=80.77 Aligned_cols=69 Identities=42% Similarity=0.746 Sum_probs=55.7
Q ss_pred EEEEEEEeecCeEEEEEEEeCCCCCCccCCccchhHHHHHHHHHHHHhhhhhcCCccC-CCCCCeeEEee
Q psy104 16 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRK-NIVDNREVVDK 84 (86)
Q Consensus 16 ~~~~~~l~e~~~~l~LtIidTpGfGd~i~n~~~~~~i~~yI~~qf~~yl~eE~~i~R~-~~~D~RVH~Cl 84 (86)
....+.+++.++...|||+|+||||+..++..+|.++.+|+..++..++.+|.+..|+ ++.|.|+||||
T Consensus 47 ~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~l 116 (270)
T 3sop_A 47 KAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCL 116 (270)
T ss_dssp CEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEE
T ss_pred eeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeee
Confidence 3344455777888899999999999999999999999999999999999999888775 88999999997
No 7
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.41 E-value=0.0073 Score=42.07 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=34.0
Q ss_pred EEEEEeCCCCCCc-------------cCCccchhHHHHHHHHHHHHhhhhhcCC
Q psy104 30 RLTVVDTPGFGDS-------------INSEESWRACCSYIDDQFRQYFNDESGL 70 (86)
Q Consensus 30 ~LtIidTpGfGd~-------------i~n~~~~~~i~~yI~~qf~~yl~eE~~i 70 (86)
++.++||||+++. +++...+..+.+|+..+|..+|.++-++
T Consensus 145 ~~~l~DtpG~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~l~~~y~i 198 (262)
T 3cnl_A 145 GVKILDTPGILYKNIFSEDLAAKLLLVGSLPVERIEDQRIFERAFEIFARSIGI 198 (262)
T ss_dssp SCEEESSCEECCCCCCSHHHHHHHHHTTSSCGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCcccCcCCCChhhcccccCCHHHHHHHHHHHHHHhCHHHHHHHcCc
Confidence 6789999999964 5777778889999999998888876554
No 8
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.05 E-value=0.038 Score=37.82 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=15.3
Q ss_pred EEeecCeEEEEEEEeCCCCCCcc
Q psy104 21 DIEERGVKLRLTVVDTPGFGDSI 43 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd~i 43 (86)
.+..++ .+|+|+||||+++..
T Consensus 81 ~~~~~~--~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 81 SRSRAG--FTLNIIDTPGLIEGG 101 (270)
T ss_dssp EEEETT--EEEEEEECCCSEETT
T ss_pred EEeeCC--eEEEEEECCCCCCCc
Confidence 344444 568999999998753
No 9
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.30 E-value=0.37 Score=32.70 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=14.6
Q ss_pred EEeecCeEEEEEEEeCCCCCCc
Q psy104 21 DIEERGVKLRLTVVDTPGFGDS 42 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd~ 42 (86)
.+..++. .|+++||||+++.
T Consensus 78 ~~~~~~~--~l~liDTpG~~~~ 97 (262)
T 3def_A 78 SRTMGGF--TINIIDTPGLVEA 97 (262)
T ss_dssp EEEETTE--EEEEEECCCSEET
T ss_pred EEEECCe--eEEEEECCCCCCc
Confidence 3444443 8899999999864
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=87.79 E-value=0.83 Score=29.36 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=11.9
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
..+.++||||+++.
T Consensus 79 ~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 79 PVAHLVDLPGYGYA 92 (223)
T ss_dssp CSEEEEECCCCCSS
T ss_pred CcEEEEcCCCCCcc
Confidence 56889999999875
No 11
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=86.48 E-value=1 Score=31.59 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=11.8
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
.+|.++||||+.+.
T Consensus 55 ~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 55 RQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEEECCCCCCC
T ss_pred cEEEEecCccccch
Confidence 57889999999864
No 12
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.38 E-value=0.91 Score=28.40 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=12.4
Q ss_pred EEEEEeCCCCCCccC
Q psy104 30 RLTVVDTPGFGDSIN 44 (86)
Q Consensus 30 ~LtIidTpGfGd~i~ 44 (86)
++.++||||||+...
T Consensus 70 ~~~l~Dt~G~~~~~~ 84 (195)
T 1svi_A 70 ELHFVDVPGYGFAKV 84 (195)
T ss_dssp TEEEEECCCBCCCSS
T ss_pred cEEEEECCCCCcccc
Confidence 588999999987644
No 13
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.37 E-value=2.1 Score=26.03 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=20.2
Q ss_pred cceEEEEEEEEEeecCeEEEEEEEeCCCCC
Q psy104 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 11 ~t~~I~~~~~~l~e~~~~l~LtIidTpGfG 40 (86)
.+..+......+.-++..+.|.++||||..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 40 TTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp TTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred CCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 344444444455557778999999999954
No 14
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=85.22 E-value=0.5 Score=31.94 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=11.5
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
..++|+||||+++.
T Consensus 70 ~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 70 CHVEVVDTPDIFSS 83 (247)
T ss_dssp EEEEEEECCSCSST
T ss_pred cEEEEEECCCCCCC
Confidence 46889999999754
No 15
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=85.16 E-value=1.2 Score=27.68 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=11.8
Q ss_pred EEEEEeCCCCCCccC
Q psy104 30 RLTVVDTPGFGDSIN 44 (86)
Q Consensus 30 ~LtIidTpGfGd~i~ 44 (86)
++.++|||||++...
T Consensus 69 ~~~i~Dt~G~~~~~~ 83 (195)
T 3pqc_A 69 KYYFVDLPGYGYAKV 83 (195)
T ss_dssp TEEEEECCCBSSSCC
T ss_pred cEEEEECCCCccccC
Confidence 467999999987644
No 16
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=85.08 E-value=0.41 Score=31.71 Aligned_cols=15 Identities=53% Similarity=0.680 Sum_probs=10.5
Q ss_pred EEEEEEeCCCCCCcc
Q psy104 29 LRLTVVDTPGFGDSI 43 (86)
Q Consensus 29 l~LtIidTpGfGd~i 43 (86)
..++|+|||||++.-
T Consensus 78 ~~i~liDTpG~~~~~ 92 (239)
T 3lxx_A 78 TELVVVDTPGIFDTE 92 (239)
T ss_dssp EEEEEEECCSCC---
T ss_pred ceEEEEECCCccCCC
Confidence 367899999998653
No 17
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=84.85 E-value=1.4 Score=30.69 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=20.0
Q ss_pred EEEEEEeCCCCCCccCCccchhHHHHHHHHHHHHhh
Q psy104 29 LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF 64 (86)
Q Consensus 29 l~LtIidTpGfGd~i~n~~~~~~i~~yI~~qf~~yl 64 (86)
..+.++||||+++.. .|..+-.++......++
T Consensus 59 ~~i~lvDTPG~~~~~----~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 59 AQIIFLDTPGIYEPK----KSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEEECCCCCCCC----TTCHHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCccc----cchhHHHHHHHHHHHHh
Confidence 568899999998643 34444455544444444
No 18
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.52 E-value=2.5 Score=25.78 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=19.3
Q ss_pred cceEEEEEEEEEeecCeEEEEEEEeCCCCCC
Q psy104 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 11 ~t~~I~~~~~~l~e~~~~l~LtIidTpGfGd 41 (86)
.|..+......+.-++..+.|.++||||...
T Consensus 42 ~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 42 STVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp CCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 3444443333445567789999999999653
No 19
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=83.86 E-value=3.2 Score=24.92 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=15.8
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++...++.++||||+..
T Consensus 47 ~~~~~~~~~~~~~~Dt~G~~~ 67 (170)
T 1z0j_A 47 TVQYQNELHKFLIWDTAGLER 67 (170)
T ss_dssp EEEETTEEEEEEEEEECCSGG
T ss_pred EEEECCeEEEEEEEcCCCchh
Confidence 344456678999999999853
No 20
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=82.73 E-value=1.2 Score=31.64 Aligned_cols=14 Identities=50% Similarity=0.800 Sum_probs=11.9
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
..|+++||||++..
T Consensus 130 ~~l~lvDTPG~~~~ 143 (353)
T 2x2e_A 130 LNLTLVDLPGMTKV 143 (353)
T ss_dssp CSEEEEECCCBCSS
T ss_pred CCcEEEECCCCCCC
Confidence 57999999999863
No 21
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=82.48 E-value=3.4 Score=25.11 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=19.1
Q ss_pred ceEEEEEEEEEeecCeEEEEEEEeCCCCC
Q psy104 12 TTTIEKKSMDIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 12 t~~I~~~~~~l~e~~~~l~LtIidTpGfG 40 (86)
+.........+.-++..+.+.++||||..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 39 TIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 33333333444556678899999999964
No 22
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=82.27 E-value=3.6 Score=24.86 Aligned_cols=29 Identities=28% Similarity=0.219 Sum_probs=18.4
Q ss_pred ceEEEEEEEEEeecCeEEEEEEEeCCCCC
Q psy104 12 TTTIEKKSMDIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 12 t~~I~~~~~~l~e~~~~l~LtIidTpGfG 40 (86)
+..+......+.-++..+.|.++||||..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 46 TIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 33333333344445667899999999954
No 23
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=81.78 E-value=4.6 Score=24.75 Aligned_cols=30 Identities=30% Similarity=0.282 Sum_probs=19.6
Q ss_pred cceEEEEEEEEEeecCeEEEEEEEeCCCCC
Q psy104 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 11 ~t~~I~~~~~~l~e~~~~l~LtIidTpGfG 40 (86)
.+.........+.-++-.+.|.++||||..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 41 HTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp CCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 344444333444556677899999999965
No 24
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.69 E-value=3.9 Score=24.44 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=14.5
Q ss_pred EeecCeEEEEEEEeCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfG 40 (86)
+.-++-.+.+.++||||..
T Consensus 45 ~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 45 VTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEETTEEEEEEEEEECCSG
T ss_pred EEECCEEEEEEEEECCCCh
Confidence 3335667899999999964
No 25
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=81.39 E-value=3.7 Score=25.42 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=19.3
Q ss_pred ceEEEEEEEEEeecCeEEEEEEEeCCCCC
Q psy104 12 TTTIEKKSMDIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 12 t~~I~~~~~~l~e~~~~l~LtIidTpGfG 40 (86)
+.........+.-++..+.+.++||||..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 48 TIGVDFKIRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp CSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 33344444444556778899999999954
No 26
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=80.32 E-value=1.3 Score=30.33 Aligned_cols=13 Identities=46% Similarity=0.815 Sum_probs=10.6
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
..++++||||+.+
T Consensus 131 ~~~~lvDTpG~~~ 143 (315)
T 1jwy_B 131 VNLTLVDLPGITK 143 (315)
T ss_dssp CSEEEEECCCCC-
T ss_pred CCcEEEECCCCcc
Confidence 4689999999975
No 27
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=80.27 E-value=4 Score=25.62 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=19.5
Q ss_pred ceEEEEEEEEEeecCeEEEEEEEeCCCCCC
Q psy104 12 TTTIEKKSMDIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 12 t~~I~~~~~~l~e~~~~l~LtIidTpGfGd 41 (86)
|..+......+.-++..++|.++||||...
T Consensus 40 t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (203)
T 1zbd_A 40 TVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69 (203)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 333333333444566788999999999853
No 28
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=80.05 E-value=2.2 Score=28.76 Aligned_cols=14 Identities=50% Similarity=0.800 Sum_probs=11.9
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
..|+++||||++..
T Consensus 125 ~~l~lvDtpG~~~~ 138 (299)
T 2aka_B 125 LNLTLVDLPGMTKV 138 (299)
T ss_dssp CSEEEEECCCBCSS
T ss_pred CCceEEeCCCCCCC
Confidence 57999999999853
No 29
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=79.87 E-value=1.8 Score=30.60 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCCccCCccchhHHHHHHHHHHHHhhh
Q psy104 30 RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 65 (86)
Q Consensus 30 ~LtIidTpGfGd~i~n~~~~~~i~~yI~~qf~~yl~ 65 (86)
.|+++||||+++..... .-..+...+......|+.
T Consensus 137 ~l~lvDtPG~~~~~~~~-q~~~~~~~~~~~~~~~i~ 171 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDG-QSDSIVKDIENMVRSYIE 171 (360)
T ss_dssp SEEEEECCCBCSSCCTT-CCSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcCCcCC-CchhHHHHHHHHHHHHhh
Confidence 68999999998753321 111234444555555543
No 30
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=79.86 E-value=3 Score=25.12 Aligned_cols=20 Identities=25% Similarity=0.435 Sum_probs=14.7
Q ss_pred EEeecCeEEEEEEEeCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfG 40 (86)
.+.-++..+.|.++||||..
T Consensus 47 ~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 47 KLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEESSSCEEEEEEEECCCC-
T ss_pred EEEECCEEEEEEEEECCCcH
Confidence 34445678899999999965
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=79.80 E-value=2.5 Score=25.31 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=15.1
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..+.+.++||||...
T Consensus 47 ~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 47 IQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp EEETTEEEEEEEECCTTGGG
T ss_pred EEECCEEEEEEEEcCCCcHh
Confidence 34456688999999999643
No 32
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=79.61 E-value=0.77 Score=30.69 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.2
Q ss_pred EEEEEEeCCCCCCcc
Q psy104 29 LRLTVVDTPGFGDSI 43 (86)
Q Consensus 29 l~LtIidTpGfGd~i 43 (86)
..+.++||||+++..
T Consensus 71 ~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 71 REIVIIDTPDMFSWK 85 (260)
T ss_dssp EEEEEEECCGGGGSS
T ss_pred CEEEEEECcCCCCCC
Confidence 468999999998754
No 33
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=78.93 E-value=3.8 Score=24.75 Aligned_cols=21 Identities=38% Similarity=0.484 Sum_probs=15.4
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.|.++||||...
T Consensus 56 ~~~~~~~~~~~~l~Dt~G~~~ 76 (179)
T 1z0f_A 56 IIEVSGQKIKLQIWDTAGQER 76 (179)
T ss_dssp EEEETTEEEEEEEEECTTGGG
T ss_pred EEEECCeEEEEEEEECCCChH
Confidence 334456688999999999643
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=78.12 E-value=5.9 Score=23.58 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=15.4
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..++|.++||||...
T Consensus 47 ~~~~~~~~~~~~~~D~~G~~~ 67 (170)
T 1r2q_A 47 TVCLDDTTVKFEIWDTAGQER 67 (170)
T ss_dssp EEEETTEEEEEEEEEECCSGG
T ss_pred EEEECCEEEEEEEEeCCCcHH
Confidence 334455678999999999754
No 35
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=78.02 E-value=4.3 Score=25.40 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=19.4
Q ss_pred ceEEEEEEEEEeecCeEEEEEEEeCCCCCC
Q psy104 12 TTTIEKKSMDIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 12 t~~I~~~~~~l~e~~~~l~LtIidTpGfGd 41 (86)
|.........+.-++..+.|.++||||...
T Consensus 40 t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 40 TIGADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp CCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred cccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 333344444444455678999999999654
No 36
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=77.84 E-value=5.8 Score=24.60 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=15.7
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.|.++||||...
T Consensus 66 ~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 66 TVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp EEEETTEEEEEEEEEESCCCT
T ss_pred EEEECCEEEEEEEEeCCCchh
Confidence 334456678999999999864
No 37
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.71 E-value=3.8 Score=25.80 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=15.9
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.|.++||||...
T Consensus 61 ~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 61 TVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp EEEETTEEEEEEEECCTTGGG
T ss_pred EEEECCEEEEEEEEeCCCcHH
Confidence 334466788999999999654
No 38
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=77.16 E-value=9.9 Score=23.11 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=17.0
Q ss_pred EEeecCeEEEEEEEeCCCCCCc
Q psy104 21 DIEERGVKLRLTVVDTPGFGDS 42 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd~ 42 (86)
.+.-++..+.|.++||||....
T Consensus 46 ~~~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 46 LITVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEETTEEEEEEEEECCCCCTT
T ss_pred EEEECCEEEEEEEEeCCCchhh
Confidence 4455677899999999997653
No 39
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=76.74 E-value=6.5 Score=24.15 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=15.8
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..++|.++||||...
T Consensus 56 ~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 56 TISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEETTEEEEEEEEEECSSGG
T ss_pred EEEECCeEEEEEEEeCCCchh
Confidence 344456688999999999754
No 40
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=76.27 E-value=3.2 Score=24.91 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=15.5
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.|.++||||...
T Consensus 44 ~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 44 TVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEESSSCEEEEEEECCTTGGG
T ss_pred EEEECCEEEEEEEEeCCCChh
Confidence 334456678999999999654
No 41
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=76.04 E-value=5.7 Score=25.44 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=19.0
Q ss_pred ceEEEEEEEEEeecCeEEEEEEEeCCCCC
Q psy104 12 TTTIEKKSMDIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 12 t~~I~~~~~~l~e~~~~l~LtIidTpGfG 40 (86)
|..+......+.-++..+.|.++||||..
T Consensus 58 t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 58 TIGVDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 33333333344556778899999999964
No 42
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=75.70 E-value=4.7 Score=25.40 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=15.7
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.|.++||||...
T Consensus 49 ~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 49 TVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp EEEETTEEEEEEEECCTTTTT
T ss_pred EEEECCEEEEEEEEeCCChHH
Confidence 334456788999999999654
No 43
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=75.53 E-value=7.2 Score=24.14 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=15.4
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++-.++|.++||||...
T Consensus 63 ~~~~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 63 TVYRHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp EEEETTEEEEEEEEECCSCCS
T ss_pred EEEECCeEEEEEEEeCCCcHH
Confidence 344455678999999999653
No 44
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=74.97 E-value=7.3 Score=23.47 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=16.2
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..++|.++||||...
T Consensus 49 ~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 49 ICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp EEEETTEEEEEEEEECCCTTT
T ss_pred EEEECCEEEEEEEEECCCchh
Confidence 344567788999999999754
No 45
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=74.96 E-value=3.6 Score=25.26 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=12.2
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.|.++||||...
T Consensus 49 ~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 49 TIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp EEEETTEEEEEEEEEC-----
T ss_pred EEEECCEEEEEEEEcCCCChh
Confidence 334466789999999999653
No 46
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=74.62 E-value=5.6 Score=24.66 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=14.6
Q ss_pred EeecCeEEEEEEEeCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfG 40 (86)
+.-++..++|.++||||..
T Consensus 62 ~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 62 VDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp EEETTEEEEEEEEECCCSH
T ss_pred EEECCEEEEEEEEECCCch
Confidence 3345667899999999964
No 47
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=74.59 E-value=4 Score=25.05 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=10.6
Q ss_pred EEEEEEeCCCCC
Q psy104 29 LRLTVVDTPGFG 40 (86)
Q Consensus 29 l~LtIidTpGfG 40 (86)
..|.++||||..
T Consensus 93 ~~~~i~Dt~G~~ 104 (208)
T 3clv_A 93 IKFDIWDTAGQE 104 (208)
T ss_dssp EEEEEEECTTGG
T ss_pred eEEEEEECCCcH
Confidence 899999999954
No 48
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=74.14 E-value=1.2 Score=34.03 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=18.4
Q ss_pred ceEEEEEEEEEeecCeEEEEEEEeCCCCCCcc
Q psy104 12 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 43 (86)
Q Consensus 12 t~~I~~~~~~l~e~~~~l~LtIidTpGfGd~i 43 (86)
..+|......+.=++ .++++|||||.-|..
T Consensus 85 GITI~s~~~~~~~~~--~~iNlIDTPGHvDF~ 114 (548)
T 3vqt_A 85 GISVTTSVMQFPYRD--RVVNLLDTPGHQDFS 114 (548)
T ss_dssp ---CTTTEEEEEETT--EEEEEECCCCGGGCS
T ss_pred CCcEeeceEEEEECC--EEEEEEeCCCcHHHH
Confidence 444555555555455 568899999997663
No 49
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=73.46 E-value=5.8 Score=24.08 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=14.8
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..++|.++||||...
T Consensus 54 ~~~~~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 54 LAVNDATVKFEIWDTAGQER 73 (181)
T ss_dssp EEETTEEEEEEEEECCCSGG
T ss_pred EEECCEEEEEEEEeCCCChh
Confidence 33455678999999999653
No 50
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=73.12 E-value=6.9 Score=24.41 Aligned_cols=31 Identities=13% Similarity=0.028 Sum_probs=18.8
Q ss_pred cceEEEEEEEEEeecCeEEEEEEEeCCCCCC
Q psy104 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 11 ~t~~I~~~~~~l~e~~~~l~LtIidTpGfGd 41 (86)
++.........+.-++..++|.++||||...
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (192)
T 2fg5_A 54 PTIGASFMTKTVPCGNELHKFLIWDTAGQER 84 (192)
T ss_dssp CCSSEEEEEEEEECSSSEEEEEEEEECCSGG
T ss_pred CCcceeEEEEEEEeCCEEEEEEEEcCCCchh
Confidence 3433333333344445578899999999643
No 51
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=72.99 E-value=4.9 Score=25.20 Aligned_cols=20 Identities=45% Similarity=0.657 Sum_probs=15.2
Q ss_pred EEeecCeEEEEEEEeCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfG 40 (86)
.+.-++..+.|.++||||..
T Consensus 67 ~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 67 TVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEETTEEEEEEEEEECCSG
T ss_pred EEEECCeEEEEEEEeCCCcH
Confidence 33445668899999999964
No 52
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=72.83 E-value=4.8 Score=24.67 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=11.4
Q ss_pred EEEEEeCCCCCCcc
Q psy104 30 RLTVVDTPGFGDSI 43 (86)
Q Consensus 30 ~LtIidTpGfGd~i 43 (86)
.+.++||||+++..
T Consensus 45 ~~~l~Dt~G~~~~~ 58 (190)
T 2cxx_A 45 NHKIIDMPGFGFMM 58 (190)
T ss_dssp TEEEEECCCBSCCT
T ss_pred CEEEEECCCccccc
Confidence 68899999987643
No 53
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=72.58 E-value=1.2 Score=32.09 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=10.5
Q ss_pred EEEEeCCCCCCc
Q psy104 31 LTVVDTPGFGDS 42 (86)
Q Consensus 31 LtIidTpGfGd~ 42 (86)
+.++|||||++.
T Consensus 213 ~~liDtPG~~~~ 224 (368)
T 3h2y_A 213 SSLYDTPGIINH 224 (368)
T ss_dssp CEEEECCCBCCT
T ss_pred eEEEeCCCcCcH
Confidence 789999999865
No 54
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=72.27 E-value=5.6 Score=23.88 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=15.5
Q ss_pred EEeecCeEEEEEEEeCCCCCCc
Q psy104 21 DIEERGVKLRLTVVDTPGFGDS 42 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd~ 42 (86)
.+.-++..+.|.+.||||.+..
T Consensus 43 ~~~~~~~~~~~~i~D~~g~~~~ 64 (169)
T 3q85_A 43 RIMVDKEEVTLIVYDIWEQGDA 64 (169)
T ss_dssp EEEETTEEEEEEEECCCCC---
T ss_pred EEEECCeEEEEEEEECCCcccc
Confidence 4445677899999999998754
No 55
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=72.00 E-value=9.2 Score=25.69 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=11.8
Q ss_pred EEEEEeCCCCCCccC
Q psy104 30 RLTVVDTPGFGDSIN 44 (86)
Q Consensus 30 ~LtIidTpGfGd~i~ 44 (86)
.+.++||||+.+...
T Consensus 51 ~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 51 EFLVVDLPGIYSLTA 65 (271)
T ss_dssp EEEEEECCCCSCCCS
T ss_pred eEEEEeCCCcccccc
Confidence 489999999876444
No 56
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=71.51 E-value=8 Score=22.73 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=15.9
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.+.++||||...
T Consensus 43 ~~~~~~~~~~~~~~D~~G~~~ 63 (166)
T 2ce2_X 43 QVVIDGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEETTEEEEEEEEECCCCSS
T ss_pred EEEECCEEEEEEEEECCCchh
Confidence 344456788999999999753
No 57
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=71.21 E-value=5.3 Score=25.12 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=15.6
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++-.+.|.++||||...
T Consensus 69 ~~~~~~~~~~l~i~Dt~G~~~ 89 (199)
T 2p5s_A 69 TLIVDGERTVLQLWDTAGQER 89 (199)
T ss_dssp EEEETTEEEEEEEEECTTCTT
T ss_pred EEEECCEEEEEEEEECCCCcc
Confidence 334456678899999999754
No 58
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=71.16 E-value=9.5 Score=22.65 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=14.8
Q ss_pred eecCeEEEEEEEeCCCCCC
Q psy104 23 EERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 23 ~e~~~~l~LtIidTpGfGd 41 (86)
.-++-.+.+.++||||..+
T Consensus 45 ~~~~~~~~~~~~Dt~G~~~ 63 (172)
T 2erx_A 45 SCDKSICTLQITDTTGSHQ 63 (172)
T ss_dssp EETTEEEEEEEEECCSCSS
T ss_pred EECCEEEEEEEEECCCchh
Confidence 4456678999999999764
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=71.15 E-value=8.2 Score=22.78 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=15.7
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.+.++||||...
T Consensus 43 ~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1kao_A 43 EIEVDSSPSVLEILDTAGTEQ 63 (167)
T ss_dssp EEEETTEEEEEEEEECCCTTC
T ss_pred EEEECCEEEEEEEEECCCchh
Confidence 344466788999999999653
No 60
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=71.08 E-value=7.9 Score=26.17 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=11.8
Q ss_pred EEEEEeCCCCCCccC
Q psy104 30 RLTVVDTPGFGDSIN 44 (86)
Q Consensus 30 ~LtIidTpGfGd~i~ 44 (86)
.++++||||+.+...
T Consensus 49 ~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 49 LIEITDLPGVYSLVA 63 (256)
T ss_dssp EEEEEECCCCSSCC-
T ss_pred EEEEEeCCCcccccc
Confidence 789999999976543
No 61
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=71.00 E-value=3.9 Score=32.83 Aligned_cols=13 Identities=46% Similarity=0.759 Sum_probs=11.1
Q ss_pred EEEEEeCCCCCCc
Q psy104 30 RLTVVDTPGFGDS 42 (86)
Q Consensus 30 ~LtIidTpGfGd~ 42 (86)
.|++|||||++..
T Consensus 151 qL~LVDTPGi~~~ 163 (772)
T 3zvr_A 151 NLTLVDLPGMTKV 163 (772)
T ss_dssp SEEEEECCCCCCC
T ss_pred ceEEEECCCcccC
Confidence 5889999999973
No 62
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=70.90 E-value=7.3 Score=23.67 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=15.6
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..+.|.++||||...
T Consensus 46 ~~~~~~~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 46 VMVDGKPVNLGLWDTAGQED 65 (186)
T ss_dssp EEETTEEEEEEEECCCCSGG
T ss_pred EEECCEEEEEEEEECCCCHh
Confidence 34456789999999999854
No 63
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=70.35 E-value=3.6 Score=25.68 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=11.8
Q ss_pred EEEEEEEeCCCCC
Q psy104 28 KLRLTVVDTPGFG 40 (86)
Q Consensus 28 ~l~LtIidTpGfG 40 (86)
.+.|.++||||..
T Consensus 72 ~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 72 SVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEETTTTH
T ss_pred EEEEEEEECCCcH
Confidence 8899999999975
No 64
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=70.17 E-value=5.8 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=17.9
Q ss_pred EEEEEEEEeecCeEEEEEEEeCCCCC
Q psy104 15 IEKKSMDIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 15 I~~~~~~l~e~~~~l~LtIidTpGfG 40 (86)
++.....+.-++-.+.|.++||||..
T Consensus 50 ~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 50 VEVHPLVFHTNRGPIKFNVWDTAGQE 75 (221)
T ss_dssp EEEEEEEEEETTEEEEEEEEEECSGG
T ss_pred eeEEEEEEEECCEEEEEEEEeCCChH
Confidence 44444444445667899999999954
No 65
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=70.08 E-value=4.9 Score=25.43 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=15.3
Q ss_pred EEeecCeEEEEEEEeCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfG 40 (86)
.+.-++..+.|.++||||..
T Consensus 66 ~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 66 VVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp EEEETTEEEEEEEECCTTHH
T ss_pred EEEECCeeeEEEEEcCCCcH
Confidence 34446678899999999964
No 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=70.01 E-value=8.5 Score=23.40 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=15.1
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.|.++||||...
T Consensus 44 ~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 44 QVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEETTEEEEEEEEECCCC--
T ss_pred EEEECCcEEEEEEEECCCcHH
Confidence 344567788999999999653
No 67
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=69.96 E-value=1.5 Score=31.53 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=10.3
Q ss_pred EEEEeCCCCCCc
Q psy104 31 LTVVDTPGFGDS 42 (86)
Q Consensus 31 LtIidTpGfGd~ 42 (86)
+.++|||||++.
T Consensus 214 ~~liDtPG~~~~ 225 (369)
T 3ec1_A 214 ATLYDTPGIINH 225 (369)
T ss_dssp CEEEECCSCCCC
T ss_pred eEEEeCCCcCcH
Confidence 689999999854
No 68
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=68.89 E-value=9.9 Score=23.09 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=12.1
Q ss_pred EEEEEEEeCCCCCC
Q psy104 28 KLRLTVVDTPGFGD 41 (86)
Q Consensus 28 ~l~LtIidTpGfGd 41 (86)
.+.+.++||||...
T Consensus 69 ~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 69 RIHLQLWDTAGLER 82 (195)
T ss_dssp EEEEEEEEECCSGG
T ss_pred EEEEEEEeCCCcHH
Confidence 78999999999853
No 69
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=68.74 E-value=9.9 Score=22.42 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=13.5
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++-.+.+.++||||...
T Consensus 45 ~~~~~~~~~~~l~D~~G~~~ 64 (168)
T 1u8z_A 45 VVLDGEEVQIDILDTAGQED 64 (168)
T ss_dssp EEETTEEEEEEEEECCC---
T ss_pred EEECCEEEEEEEEECCCcch
Confidence 34456678999999999753
No 70
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=68.27 E-value=6.6 Score=24.88 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=15.3
Q ss_pred EEeecCeEEEEEEEeCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfG 40 (86)
.+.-++..++|.++||||..
T Consensus 70 ~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 70 TLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp EEEETTEEEEEEEECCTTCG
T ss_pred EEEECCEEEEEEEEECCCcH
Confidence 34445678899999999964
No 71
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=68.01 E-value=14 Score=24.95 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=12.2
Q ss_pred EEEEEEeCCCCCCcc
Q psy104 29 LRLTVVDTPGFGDSI 43 (86)
Q Consensus 29 l~LtIidTpGfGd~i 43 (86)
..+.++||||+....
T Consensus 52 ~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 52 YTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEEECCCCSSCC
T ss_pred eEEEEEECCCcCccC
Confidence 578999999987543
No 72
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=67.94 E-value=5.9 Score=24.64 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=15.1
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..+.|.++||||...
T Consensus 63 ~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 63 VNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp EEETTEEEEEEEECCTTGGG
T ss_pred EEECCEEEEEEEEECCCchh
Confidence 34456678999999999653
No 73
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=67.94 E-value=10 Score=23.56 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=16.7
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.|.++||||...
T Consensus 60 ~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 60 VVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp EEEETTEEEEEEEEECCCSTT
T ss_pred EEEECCEEEEEEEEECCCCHH
Confidence 445567789999999999864
No 74
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=67.02 E-value=3 Score=25.69 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=18.0
Q ss_pred ceEEEEEEEEE-eecCeEEEEEEEeCCCCC
Q psy104 12 TTTIEKKSMDI-EERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 12 t~~I~~~~~~l-~e~~~~l~LtIidTpGfG 40 (86)
|..+......+ .-++..++|.++||||..
T Consensus 56 t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 56 TLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred ceeeeecccccccccCCceEEEEEeCCChH
Confidence 34333333333 344568899999999954
No 75
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=66.70 E-value=3.8 Score=25.82 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=15.3
Q ss_pred EEeecCeEEEEEEEeCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfG 40 (86)
.+.-++..+.|.++||||..
T Consensus 74 ~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 74 TIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp EEEETTEEEEEEEECCTTCT
T ss_pred EEEECCEEEEEEEEECCCcH
Confidence 34446678899999999954
No 76
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=66.52 E-value=18 Score=21.97 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=16.1
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.|.++||||...
T Consensus 58 ~~~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 58 HTEIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp EEEETTEEEEEEEEECCSCGG
T ss_pred EEEeCCcEEEEEEEECCCchh
Confidence 445567788999999999653
No 77
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=66.04 E-value=5.2 Score=24.09 Aligned_cols=19 Identities=32% Similarity=0.195 Sum_probs=12.1
Q ss_pred eecCeEEEEEEEeCCCCCC
Q psy104 23 EERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 23 ~e~~~~l~LtIidTpGfGd 41 (86)
.-++..+.|.++||||...
T Consensus 46 ~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 46 TVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EETTEEEEEEEECCC----
T ss_pred EECCEEEEEEEEecCCCCc
Confidence 3456688999999999865
No 78
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=65.79 E-value=12 Score=22.62 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=15.2
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..+.|.++||||...
T Consensus 59 ~~~~~~~~~~~l~Dt~G~~~ 78 (187)
T 2a9k_A 59 VVLDGEEVQIDILDTAGQED 78 (187)
T ss_dssp EEETTEEEEEEEEECCCTTC
T ss_pred EEECCEEEEEEEEECCCCcc
Confidence 34456678999999999653
No 79
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=65.74 E-value=2.9 Score=29.04 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=11.1
Q ss_pred EEEEEeCCCCCCc
Q psy104 30 RLTVVDTPGFGDS 42 (86)
Q Consensus 30 ~LtIidTpGfGd~ 42 (86)
.+.++|||||...
T Consensus 166 ~~~l~DtpG~~~~ 178 (282)
T 1puj_A 166 ELELLDTPGILWP 178 (282)
T ss_dssp TEEEEECCCCCCS
T ss_pred CEEEEECcCcCCC
Confidence 5789999999865
No 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=65.27 E-value=12 Score=22.97 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=14.1
Q ss_pred EEeecCeEEEEEEEeCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfG 40 (86)
.+.-++..+.|.++||||..
T Consensus 61 ~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 61 QVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEETTEEEEEEEEECCC--
T ss_pred EEEECCEEEEEEEEECCChH
Confidence 34445668899999999965
No 81
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=64.80 E-value=6 Score=30.64 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=14.7
Q ss_pred cCeEEEEEEEeCCCCCCc
Q psy104 25 RGVKLRLTVVDTPGFGDS 42 (86)
Q Consensus 25 ~~~~l~LtIidTpGfGd~ 42 (86)
++-...|+++||||.-|.
T Consensus 67 ~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp TSCEEEEEEEECCCCGGG
T ss_pred CCCeEEEEEEECCCchHH
Confidence 556789999999998654
No 82
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=64.78 E-value=14 Score=22.90 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=15.9
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..+.|.++||||..+
T Consensus 69 ~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 69 ATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp EEETTEEEEEEEEECCCCCC
T ss_pred EEECCEEEEEEEEECCCCCc
Confidence 34456688999999999875
No 83
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=64.41 E-value=6.1 Score=25.40 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=15.1
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..+.|.++||||...
T Consensus 55 ~~~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 55 LEIEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp EEETTEEEEEEEECCTTTTT
T ss_pred EEECCEEEEEEEEECCCccc
Confidence 33456678999999999654
No 84
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=63.65 E-value=16 Score=22.62 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=15.3
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..+.|.++||||...
T Consensus 55 ~~~~~~~~~~~l~Dt~G~~~ 74 (206)
T 2bov_A 55 VVLDGEEVQIDILDTAGQED 74 (206)
T ss_dssp EEETTEEEEEEEEECCCTTC
T ss_pred EEECCEEEEEEEEcCCChhh
Confidence 34456678999999999754
No 85
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=63.48 E-value=7.4 Score=25.69 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=18.2
Q ss_pred CcceEEEEEEEEEeecCeEEEEEEEeCCCCC
Q psy104 10 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 10 ~~t~~I~~~~~~l~e~~~~l~LtIidTpGfG 40 (86)
.+|+.+.-+...+.-++..++|.|.||+|--
T Consensus 43 ~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 43 QATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp -------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred CCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 3455444444455667789999999999954
No 86
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=63.00 E-value=4.4 Score=26.28 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=11.3
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
..|.++||||+++
T Consensus 76 ~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 76 NKYQIIDTPGLLD 88 (228)
T ss_dssp EEEEEEECTTTTT
T ss_pred CeEEEEECCCCcC
Confidence 6789999999975
No 87
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=62.56 E-value=4.8 Score=31.43 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=16.8
Q ss_pred CcceEEEEEEEEEe--ec---CeEEEEEEEeCCCCCCc
Q psy104 10 GKTTTIEKKSMDIE--ER---GVKLRLTVVDTPGFGDS 42 (86)
Q Consensus 10 ~~t~~I~~~~~~l~--e~---~~~l~LtIidTpGfGd~ 42 (86)
....+|....+.+. .. .-...+++|||||.-|.
T Consensus 61 eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF 98 (709)
T 4fn5_A 61 ERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF 98 (709)
T ss_dssp -------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC
T ss_pred HcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc
Confidence 34455655555443 11 12478999999998665
No 88
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=62.13 E-value=3.2 Score=32.29 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=12.0
Q ss_pred EEEEEEeCCCCCCcc
Q psy104 29 LRLTVVDTPGFGDSI 43 (86)
Q Consensus 29 l~LtIidTpGfGd~i 43 (86)
..+.++||||+++.-
T Consensus 91 ~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 91 HILVLLDTEGLGDVE 105 (592)
T ss_dssp CEEEEEEECCBCCGG
T ss_pred ceEEEecCCCcCccc
Confidence 357899999999753
No 89
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=62.09 E-value=3.5 Score=30.48 Aligned_cols=13 Identities=54% Similarity=0.917 Sum_probs=11.4
Q ss_pred EEEEEeCCCCCCc
Q psy104 30 RLTVVDTPGFGDS 42 (86)
Q Consensus 30 ~LtIidTpGfGd~ 42 (86)
+++++||||+.+.
T Consensus 84 ~l~liDTpG~~d~ 96 (423)
T 3qq5_A 84 PVTLVDTPGLDDV 96 (423)
T ss_dssp EEEEEECSSTTCC
T ss_pred eEEEEECcCCCcc
Confidence 7899999999865
No 90
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=61.77 E-value=10 Score=24.03 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=15.3
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.|.++||||...
T Consensus 70 ~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 70 NVMVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp EEECC-CEEEEEEEEECCSGG
T ss_pred EEEECCEEEEEEEEECCCchh
Confidence 444556788999999999754
No 91
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=61.36 E-value=20 Score=22.07 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=15.4
Q ss_pred EEeecCeEEEEEEEeCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfG 40 (86)
.+.-++..+.|.++||||-.
T Consensus 63 ~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 63 VMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEETTEEEEEEEEEECCSG
T ss_pred EEEECCEEEEEEEEECCCcH
Confidence 34556778899999999954
No 92
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=61.12 E-value=10 Score=23.96 Aligned_cols=12 Identities=42% Similarity=0.565 Sum_probs=10.8
Q ss_pred EEEEEEEeCCCC
Q psy104 28 KLRLTVVDTPGF 39 (86)
Q Consensus 28 ~l~LtIidTpGf 39 (86)
.++|.++||||.
T Consensus 83 ~~~l~l~Dt~G~ 94 (217)
T 2f7s_A 83 KVHLQLWDTAGQ 94 (217)
T ss_dssp EEEEEEEEEESH
T ss_pred eEEEEEEECCCc
Confidence 788999999994
No 93
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=60.52 E-value=13 Score=22.67 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=11.5
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
..+.++||||....
T Consensus 54 ~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 54 EKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEEECCCCSCC
T ss_pred cEEEEEECCCcCcc
Confidence 57889999998754
No 94
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=60.47 E-value=14 Score=22.71 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=15.3
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..+.|.++||||...
T Consensus 49 ~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 49 ISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp EEETTEEEEEEEEECCGGGS
T ss_pred EEECCEEEEEEEEeCCChHH
Confidence 34456788999999999653
No 95
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=60.46 E-value=5 Score=31.12 Aligned_cols=18 Identities=39% Similarity=0.656 Sum_probs=14.8
Q ss_pred cCeEEEEEEEeCCCCCCc
Q psy104 25 RGVKLRLTVVDTPGFGDS 42 (86)
Q Consensus 25 ~~~~l~LtIidTpGfGd~ 42 (86)
++-...|+++||||.-|.
T Consensus 69 dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp TSCEEEEEEECCCCSGGG
T ss_pred CCCeEEEEEEECCCcHhH
Confidence 456789999999999764
No 96
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=60.31 E-value=14 Score=23.28 Aligned_cols=20 Identities=40% Similarity=0.554 Sum_probs=15.7
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..+.|.++||||...
T Consensus 66 ~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 66 IEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEETTEEEEEEEEECTTCTT
T ss_pred EEECCEEEEEEEEECCCcHH
Confidence 44566788999999999754
No 97
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=60.24 E-value=9.7 Score=27.91 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=17.0
Q ss_pred eEEEEEEEEEeecCeEEEEEEEeCCCCCCc
Q psy104 13 TTIEKKSMDIEERGVKLRLTVVDTPGFGDS 42 (86)
Q Consensus 13 ~~I~~~~~~l~e~~~~l~LtIidTpGfGd~ 42 (86)
..+......++.++ ..++++||||.-+.
T Consensus 81 iTid~~~~~~~~~~--~~~~iiDTPGh~~f 108 (439)
T 3j2k_7 81 KTVEVGRAYFETEK--KHFTILDAPGHKSF 108 (439)
T ss_pred ceEEEeEEEEecCC--eEEEEEECCChHHH
Confidence 44444444444343 48999999997543
No 98
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=59.65 E-value=14 Score=23.47 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=12.4
Q ss_pred EEeecCeEEEEEEEeCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfG 40 (86)
.+.-++..+.|.++||||..
T Consensus 74 ~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 74 NLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp EEEETTEEEEEEEEEC----
T ss_pred EEEECCEEEEEEEEECCCch
Confidence 34456678899999999964
No 99
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=59.10 E-value=12 Score=22.14 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=14.7
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++-.+.|.++||||...
T Consensus 44 ~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 44 VEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EESSSCEEEEEEEEECSSCS
T ss_pred EEECCEEEEEEEEECCChHH
Confidence 33345578899999999753
No 100
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=56.10 E-value=8 Score=23.12 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=16.7
Q ss_pred ceEEEEEEEEEeecCeEEEEEEEeCCCCCC
Q psy104 12 TTTIEKKSMDIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 12 t~~I~~~~~~l~e~~~~l~LtIidTpGfGd 41 (86)
|..+....+.+. ..+|.++||||...
T Consensus 38 t~~~~~~~~~~~----~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 38 TIGFNVETVTYK----NLKFQVWDLGGLTS 63 (171)
T ss_dssp CSSEEEEEEEET----TEEEEEEEECCCGG
T ss_pred cCccceEEEEEC----CEEEEEEECCCChh
Confidence 444444444443 46789999999754
No 101
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=55.81 E-value=23 Score=21.71 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=15.4
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..++|.++||||...
T Consensus 59 ~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 59 VTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EESSSCEEEEEEECCCCSSS
T ss_pred EEECCEEEEEEEEECCCCcc
Confidence 44456678999999999764
No 102
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=55.56 E-value=7.6 Score=23.45 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=12.9
Q ss_pred CeEEEEEEEeCCCCCC
Q psy104 26 GVKLRLTVVDTPGFGD 41 (86)
Q Consensus 26 ~~~l~LtIidTpGfGd 41 (86)
+..++|.++||||-..
T Consensus 53 ~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTI 68 (178)
T ss_dssp TEEEEEEEEECTTCCT
T ss_pred CCEEEEEEEECCCCcc
Confidence 3678999999999653
No 103
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=55.19 E-value=10 Score=23.16 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=17.4
Q ss_pred CcceEEEEEEEEEeecCeEEEEEEEeCCCCC
Q psy104 10 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 10 ~~t~~I~~~~~~l~e~~~~l~LtIidTpGfG 40 (86)
.+|..+....+.+ + ..++.++||||..
T Consensus 47 ~~t~~~~~~~~~~--~--~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 47 SPTLGFNIKTLEH--R--GFKLNIWDVGGQK 73 (186)
T ss_dssp CCCSSEEEEEEEE--T--TEEEEEEEECCSH
T ss_pred cccCccceEEEEE--C--CEEEEEEECCCCH
Confidence 3455555555444 2 3678999999974
No 104
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=55.14 E-value=20 Score=21.60 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=14.9
Q ss_pred EeecCeEEEEEEEeCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfG 40 (86)
+.-++..+.|.+.||||..
T Consensus 47 ~~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 47 MLVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp EEETTEEEEEEEEECSSSC
T ss_pred EEECCEEEEEEEEECCCCc
Confidence 3446678899999999975
No 105
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=54.66 E-value=23 Score=21.86 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=13.7
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..+.|.++||||...
T Consensus 62 ~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 62 ETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp EEETTEEEEEEEEECCC---
T ss_pred EEECCEEEEEEEEECCCCCc
Confidence 34456788999999999753
No 106
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=53.92 E-value=6.8 Score=29.70 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=11.9
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
.+++++||||+.+.
T Consensus 82 ~~i~liDTPG~~df 95 (528)
T 3tr5_A 82 YLINLLDTPGHADF 95 (528)
T ss_dssp EEEEEECCCCSTTC
T ss_pred EEEEEEECCCchhH
Confidence 57899999999764
No 107
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=53.23 E-value=16 Score=22.87 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=15.3
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..+.|.++||||...
T Consensus 50 ~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 50 VAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp EECSSCEEEEEEECCCCCCC
T ss_pred EEECCEEEEEEEEECCCcHH
Confidence 34456678999999999754
No 108
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=53.04 E-value=14 Score=26.84 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=9.9
Q ss_pred EEEEEeCCCCCC
Q psy104 30 RLTVVDTPGFGD 41 (86)
Q Consensus 30 ~LtIidTpGfGd 41 (86)
.+.++||||+..
T Consensus 50 ~~~l~DT~G~~~ 61 (439)
T 1mky_A 50 TFKLVDTCGVFD 61 (439)
T ss_dssp EEEEEECTTTTS
T ss_pred EEEEEECCCccc
Confidence 468899999874
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=52.85 E-value=11 Score=22.30 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=10.6
Q ss_pred EEEEEeCCCCCC
Q psy104 30 RLTVVDTPGFGD 41 (86)
Q Consensus 30 ~LtIidTpGfGd 41 (86)
.+.++||||+..
T Consensus 50 ~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 50 RFLLVDTGGLWS 61 (161)
T ss_dssp EEEEEECGGGCS
T ss_pred eEEEEECCCCCC
Confidence 678999999986
No 110
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=52.83 E-value=10 Score=28.78 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=10.8
Q ss_pred EEEEEeCCCCCC
Q psy104 30 RLTVVDTPGFGD 41 (86)
Q Consensus 30 ~LtIidTpGfGd 41 (86)
.|+++||||+++
T Consensus 155 ~l~lIDTPG~~~ 166 (550)
T 2qpt_A 155 SISIIDTPGILS 166 (550)
T ss_dssp HCEEEECCCBCC
T ss_pred CEEEEECcCCCC
Confidence 589999999986
No 111
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=52.79 E-value=36 Score=21.12 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=12.2
Q ss_pred eecCeEEEEEEEeCCCCCC
Q psy104 23 EERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 23 ~e~~~~l~LtIidTpGfGd 41 (86)
.-++..+.|.++||||...
T Consensus 66 ~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 66 TLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp C----CEEEEEEEECCCCT
T ss_pred EECCEEEEEEEEECCCccc
Confidence 3344568899999999654
No 112
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=52.78 E-value=3.1 Score=32.53 Aligned_cols=13 Identities=38% Similarity=0.953 Sum_probs=11.1
Q ss_pred EEEEEeCCCCCCc
Q psy104 30 RLTVVDTPGFGDS 42 (86)
Q Consensus 30 ~LtIidTpGfGd~ 42 (86)
.|+++||||+++.
T Consensus 175 ~l~LiDTPGl~~~ 187 (695)
T 2j69_A 175 GIEIVDSPGLNDT 187 (695)
T ss_dssp TEEEEECCCHHHH
T ss_pred CeEEEECCCCCch
Confidence 5899999999863
No 113
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=52.73 E-value=17 Score=22.79 Aligned_cols=20 Identities=40% Similarity=0.554 Sum_probs=15.2
Q ss_pred EeecCeEEEEEEEeCCCCCC
Q psy104 22 IEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 22 l~e~~~~l~LtIidTpGfGd 41 (86)
+.-++..+.|.++||||...
T Consensus 66 ~~~~~~~~~l~i~Dt~G~~~ 85 (201)
T 2gco_A 66 IEVDGKQVELALWDTAGQED 85 (201)
T ss_dssp EEETTEEEEEEEECCCCSGG
T ss_pred EEECCEEEEEEEEECCCchh
Confidence 34456788999999999643
No 114
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=52.64 E-value=12 Score=23.40 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=11.7
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
++|.++||||....
T Consensus 67 ~~~~i~Dt~G~~~~ 80 (190)
T 1m2o_B 67 IKFTTFDLGGHIQA 80 (190)
T ss_dssp EEEEEEECCCSGGG
T ss_pred EEEEEEECCCCHHH
Confidence 78899999998653
No 115
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=52.42 E-value=20 Score=21.99 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=15.1
Q ss_pred EEeecCeEEEEEEEeCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfG 40 (86)
.+.-++..+.|.++||||..
T Consensus 47 ~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 47 SFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp EEECSSCEEEEEEEEECCSG
T ss_pred EEEECCEEEEEEEEECCCCh
Confidence 34445667899999999964
No 116
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=52.10 E-value=23 Score=21.94 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=16.7
Q ss_pred EEEeecCeEEEEEEEeCCCCCC
Q psy104 20 MDIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 20 ~~l~e~~~~l~LtIidTpGfGd 41 (86)
..+.-++..+.|.+.||||...
T Consensus 58 ~~~~~~~~~~~l~i~Dt~G~~~ 79 (184)
T 3ihw_A 58 KEIVVDGQSYLLLIRDEGGPPE 79 (184)
T ss_dssp EEEEETTEEEEEEEEECSSSCC
T ss_pred EEEEECCEEEEEEEEECCCChh
Confidence 4445567789999999999643
No 117
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=50.94 E-value=14 Score=25.03 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=11.0
Q ss_pred EEEEEeCCCCCCcc
Q psy104 30 RLTVVDTPGFGDSI 43 (86)
Q Consensus 30 ~LtIidTpGfGd~i 43 (86)
.+.++||||+.+..
T Consensus 51 ~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 51 QVTLVDLPGTYSLT 64 (274)
T ss_dssp EEEEEECCCCSCSC
T ss_pred ceEEEECcCCCccc
Confidence 46789999997654
No 118
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=50.32 E-value=13 Score=23.41 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=19.5
Q ss_pred ceEEEEEEEEE-eecCeEEEEEEEeCCCCCCc
Q psy104 12 TTTIEKKSMDI-EERGVKLRLTVVDTPGFGDS 42 (86)
Q Consensus 12 t~~I~~~~~~l-~e~~~~l~LtIidTpGfGd~ 42 (86)
|.........+ ..++..+.|.++||||....
T Consensus 43 t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (218)
T 4djt_A 43 TVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK 74 (218)
T ss_dssp TTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT
T ss_pred ccceeeEEEEEEeCCCcEEEEEEEecCCchhh
Confidence 33344444433 34455689999999997543
No 119
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=49.98 E-value=14 Score=28.90 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.1
Q ss_pred CeEEEEEEEeCCCCCC
Q psy104 26 GVKLRLTVVDTPGFGD 41 (86)
Q Consensus 26 ~~~l~LtIidTpGfGd 41 (86)
+-...|+++||||..+
T Consensus 79 ~~~~~i~liDTPG~~d 94 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVD 94 (704)
T ss_pred CCceeEEEEeCCCccc
Confidence 3458899999999975
No 120
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=49.97 E-value=27 Score=20.58 Aligned_cols=21 Identities=24% Similarity=0.105 Sum_probs=13.5
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++..+.|.+.||||...
T Consensus 41 ~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 41 SIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp EEEETTEEEEEEEEECC----
T ss_pred EEEECCEEEEEEEEECCCCcc
Confidence 344567789999999999764
No 121
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=49.78 E-value=5.2 Score=28.23 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=11.4
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
..+.++||||+++.
T Consensus 149 ~~i~liDTpG~~~~ 162 (341)
T 2p67_A 149 YDVVIVETVGVGQS 162 (341)
T ss_dssp CSEEEEEEECCTTH
T ss_pred CCEEEEeCCCccch
Confidence 46889999999853
No 122
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=48.21 E-value=11 Score=22.59 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=10.0
Q ss_pred CeEEEEEEEeCCCCC
Q psy104 26 GVKLRLTVVDTPGFG 40 (86)
Q Consensus 26 ~~~l~LtIidTpGfG 40 (86)
+..+.|.++||||..
T Consensus 55 ~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 55 DKVATMQVWDTAGQE 69 (182)
T ss_dssp SCCEEEEEECCC---
T ss_pred CcEEEEEEEECCCCh
Confidence 446789999999954
No 123
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=47.52 E-value=12 Score=27.26 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=8.7
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
..++|+||||+++
T Consensus 71 ~~~~liDT~G~~~ 83 (456)
T 4dcu_A 71 YDFNLIDTGGIDI 83 (456)
T ss_dssp SCCEEECCCC---
T ss_pred ceEEEEECCCCCC
Confidence 3688999999973
No 124
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=47.07 E-value=16 Score=22.42 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=18.0
Q ss_pred CcceEEEEEEEEEeecCeEEEEEEEeCCCCCC
Q psy104 10 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 10 ~~t~~I~~~~~~l~e~~~~l~LtIidTpGfGd 41 (86)
..|..+....+.+. + ++|.++||||...
T Consensus 52 ~~t~~~~~~~~~~~--~--~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 52 LPTIGFSIEKFKSS--S--LSFTVFDMSGQGR 79 (190)
T ss_dssp CCCSSEEEEEEECS--S--CEEEEEEECCSTT
T ss_pred CCccceeEEEEEEC--C--EEEEEEECCCCHH
Confidence 44555555544443 3 6889999999654
No 125
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=46.71 E-value=28 Score=21.63 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=15.2
Q ss_pred EEeecCeEEEEEEEeCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfG 40 (86)
.+.-+|..+.+.+.||||..
T Consensus 46 ~i~~~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 46 SIQVDGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEETTEEEEEEEEECSSGG
T ss_pred EEEECCEEEEEEEEECCCch
Confidence 34446778899999999954
No 126
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=46.48 E-value=37 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=16.8
Q ss_pred EEEEeecCeEEEEEEEeCCCCCC
Q psy104 19 SMDIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 19 ~~~l~e~~~~l~LtIidTpGfGd 41 (86)
...+.-+|..+.+.+.||||.-.
T Consensus 68 ~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 68 TRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEETTEEEEEEEEEECSCCS
T ss_pred EEEEEECCEEEEEEEEECCCCcc
Confidence 33445567788899999999754
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=46.03 E-value=9.8 Score=28.45 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=5.7
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
..++++||||+.+
T Consensus 281 ~~l~liDT~G~~~ 293 (476)
T 3gee_A 281 TMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEEEC------
T ss_pred eEEEEEECCCCCc
Confidence 4689999999975
No 128
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=45.74 E-value=29 Score=23.20 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=16.5
Q ss_pred EEeecCeEEEEEEEeCCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfGd 41 (86)
.+.-++.++.|.++||||...
T Consensus 195 ~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 195 NVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp EEEETTEEEEEEEEEECCCGG
T ss_pred EEEECCEEEEEEEEeCCCchh
Confidence 345567789999999999754
No 129
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=43.76 E-value=29 Score=22.03 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=14.9
Q ss_pred EEeecCeEEEEEEEeCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfG 40 (86)
.+.-++..+.|.++||||.-
T Consensus 68 ~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 68 SFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp EEESSSSEEEEEEEEECCSG
T ss_pred EEEECCEEEEEEEEeCCCcH
Confidence 34445567899999999954
No 130
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=43.61 E-value=7.3 Score=23.64 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=8.7
Q ss_pred ecCeEEEEEEEeCCCCCC
Q psy104 24 ERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 24 e~~~~l~LtIidTpGfGd 41 (86)
-++..+.|.++||||...
T Consensus 51 ~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 51 VNGATVNLGLWDTAGQED 68 (182)
T ss_dssp -------CEEECCCC-CT
T ss_pred ECCEEEEEEEEECCCChh
Confidence 345678899999999754
No 131
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=43.61 E-value=14 Score=29.64 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=13.8
Q ss_pred CeEEEEEEEeCCCCCCc
Q psy104 26 GVKLRLTVVDTPGFGDS 42 (86)
Q Consensus 26 ~~~l~LtIidTpGfGd~ 42 (86)
+-..+++++||||..+.
T Consensus 95 ~~~~~i~liDTPG~~df 111 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDF 111 (842)
T ss_dssp SSEEEEEEECCCCCCSS
T ss_pred CCCceEEEEECcCchhh
Confidence 34688999999999764
No 132
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=43.18 E-value=9.5 Score=26.97 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=10.9
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
..+.+|||||+|.
T Consensus 172 ~~~iiiDTpGi~~ 184 (355)
T 3p32_A 172 FDVILIETVGVGQ 184 (355)
T ss_dssp CCEEEEEECSCSS
T ss_pred CCEEEEeCCCCCc
Confidence 5678999999875
No 133
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=41.77 E-value=5.3 Score=30.90 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=16.3
Q ss_pred EEEEEEEEEeecCeEEEEEEEeCCCCCCc
Q psy104 14 TIEKKSMDIEERGVKLRLTVVDTPGFGDS 42 (86)
Q Consensus 14 ~I~~~~~~l~e~~~~l~LtIidTpGfGd~ 42 (86)
+|......+.=++ .++++|||||.-|.
T Consensus 54 TI~s~~~~~~~~~--~~iNlIDTPGH~DF 80 (638)
T 3j25_A 54 TIQTGITSFQWEN--TKVNIIDTPGHMDF 80 (638)
T ss_dssp CSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred cEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence 3333333343333 45789999998765
No 134
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=41.44 E-value=15 Score=22.19 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=11.2
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
..|.++||||.-..
T Consensus 50 ~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 50 EKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEEECCCCSCS
T ss_pred cEEEEEECCCcccC
Confidence 47899999998643
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=40.84 E-value=11 Score=26.55 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=11.4
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
..+.+|||||++..
T Consensus 148 ~~~iliDT~Gi~~~ 161 (337)
T 2qm8_A 148 FDVILVETVGVGQS 161 (337)
T ss_dssp CCEEEEEECSSSSC
T ss_pred CCEEEEECCCCCcc
Confidence 35789999999854
No 136
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=40.00 E-value=13 Score=22.07 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=10.9
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
+++.++||||...
T Consensus 44 ~~~~i~Dt~G~~~ 56 (164)
T 1r8s_A 44 ISFTVWDVGGQDK 56 (164)
T ss_dssp CEEEEEECCCCGG
T ss_pred EEEEEEEcCCChh
Confidence 6789999999853
No 137
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=39.60 E-value=16 Score=28.60 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=11.7
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
..++++||||+.+.
T Consensus 75 ~~i~liDTPG~~df 88 (693)
T 2xex_A 75 HRVNIIDTPGHVDF 88 (693)
T ss_dssp EEEEEECCCCCSSC
T ss_pred eeEEEEECcCCcch
Confidence 57899999999753
No 138
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=38.90 E-value=16 Score=27.59 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=11.7
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
.+++++||||..+.
T Consensus 82 ~~i~liDTPG~~df 95 (529)
T 2h5e_A 82 CLVNLLDTPGHEDF 95 (529)
T ss_dssp EEEEEECCCCSTTC
T ss_pred eEEEEEECCCChhH
Confidence 57899999999764
No 139
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=38.53 E-value=15 Score=25.34 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=10.1
Q ss_pred EEEEEEeCCCCC
Q psy104 29 LRLTVVDTPGFG 40 (86)
Q Consensus 29 l~LtIidTpGfG 40 (86)
..++++||||+.
T Consensus 56 ~~i~~iDTpG~~ 67 (301)
T 1ega_A 56 YQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEESSSSCC
T ss_pred eeEEEEECcCCC
Confidence 468899999996
No 140
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=38.46 E-value=13 Score=23.32 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=11.4
Q ss_pred EEEEEEEeCCCCCC
Q psy104 28 KLRLTVVDTPGFGD 41 (86)
Q Consensus 28 ~l~LtIidTpGfGd 41 (86)
.++|.++||||...
T Consensus 53 ~~~~~i~Dt~G~~~ 66 (214)
T 2fh5_B 53 GNSLTLIDLPGHES 66 (214)
T ss_dssp CCEEEEEECCCCHH
T ss_pred ccEEEEEECCCChh
Confidence 47889999999753
No 141
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=38.09 E-value=15 Score=26.38 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=11.5
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
..++++||||..+.
T Consensus 75 ~~~~iiDtpG~~~f 88 (405)
T 2c78_A 75 RHYSHVDCPGHADY 88 (405)
T ss_dssp CEEEEEECCCSGGG
T ss_pred eEEEEEECCChHHH
Confidence 46789999999764
No 142
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=37.40 E-value=12 Score=26.94 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=11.0
Q ss_pred EEEEEeCCCCCCc
Q psy104 30 RLTVVDTPGFGDS 42 (86)
Q Consensus 30 ~LtIidTpGfGd~ 42 (86)
+++++||||.-+.
T Consensus 61 ~i~iiDtPGh~~f 73 (370)
T 2elf_A 61 NMVFVDAHSYPKT 73 (370)
T ss_dssp EEEEEECTTTTTC
T ss_pred EEEEEECCChHHH
Confidence 5899999998764
No 143
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=36.97 E-value=61 Score=20.14 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=15.1
Q ss_pred eecCeEEEEEEEeCCCCCC
Q psy104 23 EERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 23 ~e~~~~l~LtIidTpGfGd 41 (86)
.-++..+.|.+.||||...
T Consensus 66 ~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 66 MVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp EETTEEEEEEEECCCCCSG
T ss_pred EECCEEEEEEEEecCCCcc
Confidence 3456788999999999864
No 144
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=36.84 E-value=39 Score=21.45 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=13.5
Q ss_pred EEeecCeEEEEEEEeCCCCC
Q psy104 21 DIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 21 ~l~e~~~~l~LtIidTpGfG 40 (86)
.+.-++..+.|.+.||||.-
T Consensus 67 ~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 67 CLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp EEEC--CEEEEEEEEECCSG
T ss_pred EEEECCEEEEEEEEECCCCH
Confidence 34444567899999999953
No 145
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=36.80 E-value=17 Score=22.34 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=11.4
Q ss_pred EEEEEEEeCCCCCC
Q psy104 28 KLRLTVVDTPGFGD 41 (86)
Q Consensus 28 ~l~LtIidTpGfGd 41 (86)
.+.|.++||||...
T Consensus 62 ~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 62 RVAFTVFDMGGAKK 75 (199)
T ss_dssp TEEEEEEEECCSGG
T ss_pred CEEEEEEECCCCHh
Confidence 46789999999853
No 146
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=36.74 E-value=19 Score=22.03 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=11.3
Q ss_pred EEEEEEEeCCCCCC
Q psy104 28 KLRLTVVDTPGFGD 41 (86)
Q Consensus 28 ~l~LtIidTpGfGd 41 (86)
...+.++||||...
T Consensus 65 ~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 65 NISFEVWDLGGQTG 78 (189)
T ss_dssp TEEEEEEEECCSSS
T ss_pred CEEEEEEECCCCHh
Confidence 36889999999754
No 147
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=36.69 E-value=19 Score=22.08 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=9.3
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
.++.++||||...
T Consensus 60 ~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 60 TRFLMWDIGGQES 72 (187)
T ss_dssp EEEEEEECCC---
T ss_pred EEEEEEECCCCHh
Confidence 7889999999753
No 148
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=36.07 E-value=30 Score=23.73 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=19.1
Q ss_pred CcceEEEEEEEEEeecCeEEEEEEEeCCCCCC
Q psy104 10 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 10 ~~t~~I~~~~~~l~e~~~~l~LtIidTpGfGd 41 (86)
..|..+......+. + .++|.++||||..+
T Consensus 36 ~~Ti~~~~~~~~~~--~-~~~l~i~Dt~G~~~ 64 (307)
T 3r7w_A 36 GATIDVEHSHLRFL--G-NMTLNLWDCGGQDV 64 (307)
T ss_dssp CCCCSEEEEEEEET--T-TEEEEEEEECCSHH
T ss_pred CCccceEEEEEEeC--C-ceEEEEEECCCcHH
Confidence 44666655554442 2 47899999999753
No 149
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=35.74 E-value=18 Score=27.09 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=15.3
Q ss_pred cCeEEEEEEEeCCCCCCcc
Q psy104 25 RGVKLRLTVVDTPGFGDSI 43 (86)
Q Consensus 25 ~~~~l~LtIidTpGfGd~i 43 (86)
+|-...+-++||||+++.-
T Consensus 136 ~~~~~~vvllDTeG~~~~~ 154 (447)
T 3q5d_A 136 DGKKVAVLLMDTQGTFDSQ 154 (447)
T ss_dssp SSCEEEEEEEEEECCCSSH
T ss_pred CCCcceEEEEcCCcccccc
Confidence 4557889999999998763
No 150
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=35.67 E-value=17 Score=22.22 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=11.0
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
.+|.++||||...
T Consensus 65 ~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 65 TRFLMWDIGGQES 77 (181)
T ss_dssp EEEEEEEESSSGG
T ss_pred EEEEEEECCCCHh
Confidence 7889999999754
No 151
>1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A
Probab=35.09 E-value=26 Score=23.69 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=22.8
Q ss_pred EEeCCCCCCccCCccchhHHHHHHHHHH
Q psy104 33 VVDTPGFGDSINSEESWRACCSYIDDQF 60 (86)
Q Consensus 33 IidTpGfGd~i~n~~~~~~i~~yI~~qf 60 (86)
||--+|+|++..+..+|.++..++.++|
T Consensus 8 vVllHG~~~~~~~~~~~~~~~~~L~~~~ 35 (279)
T 1ei9_A 8 LVIWHGMGDSCCNPLSMGAIKKMVEKKI 35 (279)
T ss_dssp EEEECCTTCCSCCTTTTHHHHHHHHHHS
T ss_pred EEEECCCCCCCCCcccHHHHHHHHHHHC
Confidence 6778999987766568999999998764
No 152
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=35.05 E-value=16 Score=22.07 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=8.4
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
.++.++||||...
T Consensus 62 ~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 62 LKLNVWDLGGQTS 74 (183)
T ss_dssp EEEEEEEEC----
T ss_pred EEEEEEECCCCHh
Confidence 7899999999864
No 153
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=35.00 E-value=14 Score=23.19 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=9.2
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
+.|.++||||...
T Consensus 69 ~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 69 MTFTTFDLGGHIQ 81 (198)
T ss_dssp EEEEEEEECC---
T ss_pred EEEEEEECCCcHh
Confidence 7889999999654
No 154
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=33.92 E-value=60 Score=26.11 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=25.7
Q ss_pred EEEEEEEeCCCCCCccCCccchh-HHHHHHHHHHHHhh
Q psy104 28 KLRLTVVDTPGFGDSINSEESWR-ACCSYIDDQFRQYF 64 (86)
Q Consensus 28 ~l~LtIidTpGfGd~i~n~~~~~-~i~~yI~~qf~~yl 64 (86)
...+.|+|.+||=..-. ++|+ -.++|-+++...++
T Consensus 430 ~~~IGvLDI~GFE~f~~--NsFEQlcINyaNEkLQq~F 465 (795)
T 1w7j_A 430 HSFIGVLDIYGFETFEI--NSFEQFCINYANEKLQQQF 465 (795)
T ss_dssp SEEEEEEECCCCCCCSS--CCHHHHHHHHHHHHHHHHH
T ss_pred cceEEeeccCcccccCc--CCHHHHHHHhhhHHHHHHH
Confidence 45788999999975544 3566 44899888887664
No 155
>3lwx_A NADH:ubiquinone oxidoreductase, Na translocating, C subunit; Na(+)-translocating NADH-quinone reductase subunit C; HET: MSE GOL; 1.10A {Parabacteroides distasonis}
Probab=33.66 E-value=11 Score=25.24 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=16.3
Q ss_pred EeecC-eEEEEEEE---eCCCCCCccCCc
Q psy104 22 IEERG-VKLRLTVV---DTPGFGDSINSE 46 (86)
Q Consensus 22 l~e~~-~~l~LtIi---dTpGfGd~i~n~ 46 (86)
+..+| .-..+.|+ +|||+|+.+.+.
T Consensus 104 id~dg~~I~gv~vl~h~ETPGLG~~i~~~ 132 (199)
T 3lwx_A 104 VDSDKNTIYGADFSHQGETPGLGAEISKP 132 (199)
T ss_dssp ECTTSSBEEEEEEEESSCCTTTGGGGGSH
T ss_pred EeCCCCEEEEEEEeccCCCcchhhhccCH
Confidence 34444 44455554 699999998763
No 156
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=33.48 E-value=21 Score=22.24 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=8.2
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
+.|.++||||...
T Consensus 73 ~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 73 ICFTVWDVGGQDK 85 (192)
T ss_dssp EEEEEEECC----
T ss_pred EEEEEEECCCCHh
Confidence 6789999999754
No 157
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=33.40 E-value=61 Score=19.62 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=9.9
Q ss_pred EEEEEeCCCCCC
Q psy104 30 RLTVVDTPGFGD 41 (86)
Q Consensus 30 ~LtIidTpGfGd 41 (86)
.+.++||||+.+
T Consensus 53 ~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 53 PLHIIDTAGLRE 64 (172)
T ss_dssp EEEEEECCCCSC
T ss_pred EEEEEECCCccc
Confidence 478999999964
No 158
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=33.38 E-value=5.3 Score=24.86 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=11.5
Q ss_pred cCeEEEEEEEeCCCC
Q psy104 25 RGVKLRLTVVDTPGF 39 (86)
Q Consensus 25 ~~~~l~LtIidTpGf 39 (86)
++-.+.|.++||||.
T Consensus 68 ~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 68 HEKRVKLQIWDTAGQ 82 (191)
T ss_dssp TTTTEEEEEECHHHH
T ss_pred CCEEEEEEEEeCCCh
Confidence 344578999999994
No 159
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=33.06 E-value=22 Score=25.43 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=11.0
Q ss_pred EEEEEEEeCCCCC
Q psy104 28 KLRLTVVDTPGFG 40 (86)
Q Consensus 28 ~l~LtIidTpGfG 40 (86)
..+++++||||.-
T Consensus 82 ~~~i~iiDtPGh~ 94 (410)
T 1kk1_A 82 VRRVSFIDAPGHE 94 (410)
T ss_dssp EEEEEEEECSSHH
T ss_pred ccEEEEEECCChH
Confidence 3789999999964
No 160
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=32.94 E-value=61 Score=27.00 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=26.1
Q ss_pred EEEEEEeCCCCCCccCCccchhHH-HHHHHHHHHHhhh
Q psy104 29 LRLTVVDTPGFGDSINSEESWRAC-CSYIDDQFRQYFN 65 (86)
Q Consensus 29 l~LtIidTpGfGd~i~n~~~~~~i-~~yI~~qf~~yl~ 65 (86)
..+.|.|.+||=..-. ++|+.+ ++|-+++...|+.
T Consensus 450 ~~IGILDI~GFE~f~~--NsFEQLCINyaNEkLQq~Fn 485 (1052)
T 4anj_A 450 YFIGVLDIAGFEYFEH--NSFEQFCINYCNEKLQQFFN 485 (1052)
T ss_dssp EEEEEEECCCCCCCSS--CCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCccccc--CcHHHHHHHHHHHHHHHHHH
Confidence 4688999999965444 467754 8999998887753
No 161
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=32.70 E-value=21 Score=22.25 Aligned_cols=12 Identities=42% Similarity=0.789 Sum_probs=9.3
Q ss_pred EEEEEeCCCCCC
Q psy104 30 RLTVVDTPGFGD 41 (86)
Q Consensus 30 ~LtIidTpGfGd 41 (86)
.+.++||||+++
T Consensus 73 ~~~l~Dt~G~~~ 84 (210)
T 1pui_A 73 GKRLVDLPGYGY 84 (210)
T ss_dssp TEEEEECCCCC-
T ss_pred CEEEEECcCCcc
Confidence 467899999975
No 162
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=32.47 E-value=24 Score=21.63 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=10.5
Q ss_pred EEEEEEEeCCCCC
Q psy104 28 KLRLTVVDTPGFG 40 (86)
Q Consensus 28 ~l~LtIidTpGfG 40 (86)
.+.|.++||||..
T Consensus 59 ~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 59 GFKLNVWDIGGQR 71 (181)
T ss_dssp TEEEEEEECSSCG
T ss_pred CEEEEEEECCCCH
Confidence 3678899999964
No 163
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=32.35 E-value=30 Score=25.02 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=5.6
Q ss_pred EEEEEEeCCCCC
Q psy104 29 LRLTVVDTPGFG 40 (86)
Q Consensus 29 l~LtIidTpGfG 40 (86)
..+.++||||+.
T Consensus 51 ~~~~l~DT~G~~ 62 (436)
T 2hjg_A 51 YDFNLIDTGGID 62 (436)
T ss_dssp SCCEEEC-----
T ss_pred ceEEEEECCCCC
Confidence 358899999996
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=32.20 E-value=25 Score=25.79 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=11.5
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
.+++++||||..+.
T Consensus 85 ~~~~iiDtPGh~~f 98 (458)
T 1f60_A 85 YQVTVIDAPGHRDF 98 (458)
T ss_dssp EEEEEEECCCCTTH
T ss_pred ceEEEEECCCcHHH
Confidence 57999999998654
No 165
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=32.12 E-value=67 Score=25.42 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=26.2
Q ss_pred EEEEEEEeCCCCCCccCCccchh-HHHHHHHHHHHHhhh
Q psy104 28 KLRLTVVDTPGFGDSINSEESWR-ACCSYIDDQFRQYFN 65 (86)
Q Consensus 28 ~l~LtIidTpGfGd~i~n~~~~~-~i~~yI~~qf~~yl~ 65 (86)
...+.|.|.+||=..-. ++|+ -.++|-.++...++.
T Consensus 379 ~~~IGvLDI~GFE~f~~--NsFEQlcINy~NEkLQq~F~ 415 (697)
T 1lkx_A 379 GPVIGILDIYGFEVFQN--NSFEQLNINFCNEKLQQLFI 415 (697)
T ss_dssp CCEEEEEECCCCCCCSS--BCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeeccccccccCc--CCHHHHHHHhhhhHHHHHHH
Confidence 45688999999975544 3566 458999988877743
No 166
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=32.09 E-value=15 Score=27.28 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=4.9
Q ss_pred EEEEEeCCCCCCc
Q psy104 30 RLTVVDTPGFGDS 42 (86)
Q Consensus 30 ~LtIidTpGfGd~ 42 (86)
.++++||||+.+.
T Consensus 273 ~v~liDT~G~~~~ 285 (462)
T 3geh_A 273 PVQVLDTAGIRET 285 (462)
T ss_dssp EEEECC-------
T ss_pred EEEEEECCccccc
Confidence 4689999998653
No 167
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=32.04 E-value=21 Score=22.02 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=10.6
Q ss_pred EEEEEEEeCCCCC
Q psy104 28 KLRLTVVDTPGFG 40 (86)
Q Consensus 28 ~l~LtIidTpGfG 40 (86)
.+.|.++||||..
T Consensus 66 ~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 66 NVTIKLWDIGGQP 78 (188)
T ss_dssp TEEEEEEEECCSH
T ss_pred CEEEEEEECCCCH
Confidence 4678899999975
No 168
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=31.53 E-value=71 Score=26.49 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=26.6
Q ss_pred EEEEEEEeCCCCCCccCCccchh-HHHHHHHHHHHHhhh
Q psy104 28 KLRLTVVDTPGFGDSINSEESWR-ACCSYIDDQFRQYFN 65 (86)
Q Consensus 28 ~l~LtIidTpGfGd~i~n~~~~~-~i~~yI~~qf~~yl~ 65 (86)
...+.|+|.+||=..-.| +|. -.++|-++++..||.
T Consensus 457 ~~~IgvLDi~GFE~f~~N--sfeQlciNy~nEkLq~~f~ 493 (1184)
T 1i84_S 457 ASFLGILDIAGFEIFEIN--SFEQLCINYTNEKLQQLFN 493 (1184)
T ss_dssp CEEEEEEECCCCCCCSSB--CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCcCCCCcc--hHHHHHHHHHHHHHHHHHH
Confidence 467889999999755443 566 458999988877753
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=31.52 E-value=19 Score=26.13 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=11.8
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
.+++++||||..+.
T Consensus 84 ~~~~iiDtpG~~~f 97 (435)
T 1jny_A 84 YFFTIIDAPGHRDF 97 (435)
T ss_dssp CEEEECCCSSSTTH
T ss_pred eEEEEEECCCcHHH
Confidence 56999999998765
No 170
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=31.37 E-value=70 Score=25.65 Aligned_cols=35 Identities=26% Similarity=0.585 Sum_probs=25.9
Q ss_pred EEEEEEEeCCCCCCccCCccchh-HHHHHHHHHHHHhh
Q psy104 28 KLRLTVVDTPGFGDSINSEESWR-ACCSYIDDQFRQYF 64 (86)
Q Consensus 28 ~l~LtIidTpGfGd~i~n~~~~~-~i~~yI~~qf~~yl 64 (86)
...+.|+|.+||=..-.| +|+ -.++|-.++...++
T Consensus 445 ~~~IGvLDI~GFE~f~~N--sFEQlcINyaNEkLQq~F 480 (784)
T 2v26_A 445 SYFIGVLDIAGFEYFEHN--SFEQFCINYCNEKLQQFF 480 (784)
T ss_dssp SEEEEEEECCCCCCCSSC--CHHHHHHHHHHHHHHHHH
T ss_pred cceeeecccCCcccCCcC--CHHHHHHHHHHHHHHHHH
Confidence 356889999999755443 566 45899998887774
No 171
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=37.48 E-value=10 Score=23.79 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=14.2
Q ss_pred eecCeEEEEEEEeCCCCCC
Q psy104 23 EERGVKLRLTVVDTPGFGD 41 (86)
Q Consensus 23 ~e~~~~l~LtIidTpGfGd 41 (86)
.-++..+.|.++||||...
T Consensus 72 ~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 72 MVDGKPVNLGLWDTAGQED 90 (204)
Confidence 3345678899999999754
No 172
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=31.22 E-value=25 Score=25.11 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=11.5
Q ss_pred EEEEEEEeCCCCCC
Q psy104 28 KLRLTVVDTPGFGD 41 (86)
Q Consensus 28 ~l~LtIidTpGfGd 41 (86)
..+++++||||.-+
T Consensus 74 ~~~~~iiDtPGh~~ 87 (403)
T 3sjy_A 74 LRRISFIDAPGHEV 87 (403)
T ss_dssp EEEEEEEECCCCGG
T ss_pred cceEEEEECCCcHH
Confidence 47899999999644
No 173
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=31.01 E-value=22 Score=21.31 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=9.4
Q ss_pred EEEEEeCCCCCC
Q psy104 30 RLTVVDTPGFGD 41 (86)
Q Consensus 30 ~LtIidTpGfGd 41 (86)
.+.++||||...
T Consensus 56 ~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 56 KITFLDTPGHEA 67 (178)
T ss_dssp EEEESCCCSSSS
T ss_pred eEEEEECCCCHH
Confidence 467999999754
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=30.39 E-value=26 Score=27.32 Aligned_cols=13 Identities=46% Similarity=0.897 Sum_probs=11.2
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
..|+++||||.-+
T Consensus 77 ~~i~liDTPG~~d 89 (691)
T 1dar_A 77 HRINIIDTPGHVD 89 (691)
T ss_dssp EEEEEECCCSSTT
T ss_pred eEEEEEECcCccc
Confidence 6789999999965
No 175
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=29.86 E-value=23 Score=23.08 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=10.6
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
+.+.++||||+-+
T Consensus 109 ~d~iiiDtpG~~~ 121 (262)
T 1yrb_A 109 NDYVLIDTPGQME 121 (262)
T ss_dssp CSEEEEECCSSHH
T ss_pred CCEEEEeCCCccc
Confidence 4688999999853
No 176
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=29.08 E-value=29 Score=24.88 Aligned_cols=13 Identities=38% Similarity=0.685 Sum_probs=10.9
Q ss_pred EEEEEEEeCCCCC
Q psy104 28 KLRLTVVDTPGFG 40 (86)
Q Consensus 28 ~l~LtIidTpGfG 40 (86)
...++++||||.-
T Consensus 80 ~~~i~iiDtPGh~ 92 (408)
T 1s0u_A 80 LRRVSFVDSPGHE 92 (408)
T ss_dssp EEEEEEEECSSHH
T ss_pred ccEEEEEECCCHH
Confidence 4789999999953
No 177
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=29.07 E-value=24 Score=24.90 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=9.3
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
+.+.++||||++.
T Consensus 167 ~~~iliDT~Gi~~ 179 (349)
T 2www_A 167 YDIILIETVGVGQ 179 (349)
T ss_dssp CSEEEEECCCC--
T ss_pred CCEEEEECCCcch
Confidence 3567999999983
No 178
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=28.97 E-value=21 Score=25.94 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=11.4
Q ss_pred EEEEEEEeCCCCCC
Q psy104 28 KLRLTVVDTPGFGD 41 (86)
Q Consensus 28 ~l~LtIidTpGfGd 41 (86)
+..++++||||+..
T Consensus 65 ~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 65 PTTMEFVDIAGLVA 78 (363)
T ss_dssp CCEEEEEECCSCCT
T ss_pred eeEEEEEECCCCcc
Confidence 36799999999853
No 179
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.90 E-value=67 Score=26.69 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=25.7
Q ss_pred EEEEEEEeCCCCCCccCCccchh-HHHHHHHHHHHHhh
Q psy104 28 KLRLTVVDTPGFGDSINSEESWR-ACCSYIDDQFRQYF 64 (86)
Q Consensus 28 ~l~LtIidTpGfGd~i~n~~~~~-~i~~yI~~qf~~yl 64 (86)
...+.|.|.+||=..-. ++|+ -.++|-++++..||
T Consensus 430 ~~~IgvLDI~GFE~f~~--NsFEQlcINy~NEkLQq~F 465 (1080)
T 2dfs_A 430 HSFIGVLDIYGFETFEI--NSFEQFCINYANEKLQQQF 465 (1080)
T ss_dssp CEEEEEEEECCCCCCSS--BCHHHHHHHHHHHHHHHHH
T ss_pred CceEEeeccCCccccCc--CCHHHHHHHhhhHHHHHHH
Confidence 45788999999976544 3566 44899888877664
No 180
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=28.90 E-value=28 Score=25.19 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.2
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
.+++++||||..+.
T Consensus 104 ~~~~iiDtpGh~~f 117 (434)
T 1zun_B 104 RKFIIADTPGHEQY 117 (434)
T ss_dssp EEEEEEECCCSGGG
T ss_pred ceEEEEECCChHHH
Confidence 46899999997653
No 181
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=28.89 E-value=80 Score=25.56 Aligned_cols=35 Identities=26% Similarity=0.560 Sum_probs=26.0
Q ss_pred EEEEEEEeCCCCCCccCCccchh-HHHHHHHHHHHHhh
Q psy104 28 KLRLTVVDTPGFGDSINSEESWR-ACCSYIDDQFRQYF 64 (86)
Q Consensus 28 ~l~LtIidTpGfGd~i~n~~~~~-~i~~yI~~qf~~yl 64 (86)
...+.|.|.+||=..-. ++|+ -.++|-+++...++
T Consensus 453 ~~~IGvLDI~GFE~f~~--NsFEQlcINyaNEkLQq~F 488 (837)
T 1kk8_A 453 NYYIGVLDIAGFEIFDF--NSFEQLCINYTNERLQQFF 488 (837)
T ss_dssp CEEEEEEECCCCCCCSS--BCHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCcccccc--ccHHHHHHHHhhHHHHHHH
Confidence 46788999999975443 4566 44899998887774
No 182
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=28.51 E-value=25 Score=25.87 Aligned_cols=14 Identities=43% Similarity=0.724 Sum_probs=11.3
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
.+++++||||.-+.
T Consensus 111 ~~~~iiDTPG~~~f 124 (483)
T 3p26_A 111 ANFTIVDAPGHRDF 124 (483)
T ss_dssp CEEEEECCCCCGGG
T ss_pred ceEEEEECCCcHHH
Confidence 57899999998543
No 183
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=28.49 E-value=78 Score=26.05 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=26.1
Q ss_pred EEEEEEEeCCCCCCccCCccchh-HHHHHHHHHHHHhh
Q psy104 28 KLRLTVVDTPGFGDSINSEESWR-ACCSYIDDQFRQYF 64 (86)
Q Consensus 28 ~l~LtIidTpGfGd~i~n~~~~~-~i~~yI~~qf~~yl 64 (86)
...+.|.|.+||=..-. ++|+ -.++|-+++...||
T Consensus 426 ~~~IgvLDI~GFE~f~~--NsfEQlcINy~NEkLQq~F 461 (995)
T 2ycu_A 426 ASFLGILDIAGFEIFQL--NSFEQLCINYTNEKLQQLF 461 (995)
T ss_dssp SEEEEEEECCCBCCCSS--BCHHHHHHHHHHHHHHHHH
T ss_pred cceEEEecccccccccc--chHHHHHHHhhHHHHHHHH
Confidence 46788999999975543 4566 45899998887775
No 184
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=28.14 E-value=24 Score=26.04 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=9.0
Q ss_pred EEEEEEeCCCCCCcc
Q psy104 29 LRLTVVDTPGFGDSI 43 (86)
Q Consensus 29 l~LtIidTpGfGd~i 43 (86)
.+++++||||.-+..
T Consensus 121 ~~~~iiDtPGh~~f~ 135 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYV 135 (467)
T ss_dssp EEEEECCCCC-----
T ss_pred eEEEEEECCCcHHHH
Confidence 578999999986543
No 185
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=27.73 E-value=84 Score=25.94 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=25.6
Q ss_pred EEEEEEEeCCCCCCccCCccchh-HHHHHHHHHHHHhh
Q psy104 28 KLRLTVVDTPGFGDSINSEESWR-ACCSYIDDQFRQYF 64 (86)
Q Consensus 28 ~l~LtIidTpGfGd~i~n~~~~~-~i~~yI~~qf~~yl 64 (86)
...+.|.|.+||=..-. ++|+ -.++|-+++...|+
T Consensus 447 ~~~IgvLDI~GFE~f~~--NsfEQlcINy~NEkLQq~F 482 (1010)
T 1g8x_A 447 AYFIGVLDISGFEIFKV--NSFEQLCINYTNEKLQQFF 482 (1010)
T ss_dssp SEEEEEEECCCCCCCSS--BCHHHHHHHHHHHHHHHHH
T ss_pred CceeeeccCcccccCCc--CcHHHHHHHhhhHHHHHHH
Confidence 35678999999975443 4566 45899988877775
No 186
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=27.34 E-value=26 Score=25.04 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=10.8
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
.+++++||||..+
T Consensus 66 ~~~~iiDtpG~~~ 78 (397)
T 1d2e_A 66 RHYAHTDCPGHAD 78 (397)
T ss_dssp CEEEEEECSSHHH
T ss_pred eEEEEEECCChHH
Confidence 5688999999864
No 187
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=27.06 E-value=21 Score=22.39 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=11.1
Q ss_pred EEEEEEEeCCCCCC
Q psy104 28 KLRLTVVDTPGFGD 41 (86)
Q Consensus 28 ~l~LtIidTpGfGd 41 (86)
...|.++||||...
T Consensus 54 ~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 54 GSGVTLVDFPGHVK 67 (218)
T ss_dssp GSSCEEEECCCCGG
T ss_pred CceEEEEECCCcHH
Confidence 35788999999853
No 188
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=27.05 E-value=30 Score=26.62 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=10.9
Q ss_pred EEEEEeCCCCCCc
Q psy104 30 RLTVVDTPGFGDS 42 (86)
Q Consensus 30 ~LtIidTpGfGd~ 42 (86)
.|+++||||.-+.
T Consensus 71 ~i~liDTPGhe~F 83 (594)
T 1g7s_A 71 GLFFIDTPGHEAF 83 (594)
T ss_dssp EEEEECCCTTSCC
T ss_pred CEEEEECCCcHHH
Confidence 5899999998654
No 189
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=26.04 E-value=80 Score=23.53 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=15.6
Q ss_pred ceEEEEEEEEEeecCeEEEEEEEeCCCCC
Q psy104 12 TTTIEKKSMDIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 12 t~~I~~~~~~l~e~~~~l~LtIidTpGfG 40 (86)
|..+....+.+ ++. .+.++||||+.
T Consensus 278 T~d~~~~~i~~--~g~--~~~l~DTaG~~ 302 (482)
T 1xzp_A 278 TRDVISEEIVI--RGI--LFRIVDTAGVR 302 (482)
T ss_dssp SSCSCCEEEEE--TTE--EEEEEESSCCC
T ss_pred eeeeEEEEEec--CCe--EEEEEECCCcc
Confidence 33344444444 344 47899999998
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=25.96 E-value=34 Score=24.75 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=8.6
Q ss_pred EEEEEEEeCCCCC
Q psy104 28 KLRLTVVDTPGFG 40 (86)
Q Consensus 28 ~l~LtIidTpGfG 40 (86)
.+.+.++||||+.
T Consensus 70 ~~~i~lvDtpG~~ 82 (397)
T 1wxq_A 70 LIPVKMVDVAGLV 82 (397)
T ss_dssp EEEEEEEECC---
T ss_pred eEEEEEEECCCcc
Confidence 4679999999984
No 191
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=25.94 E-value=43 Score=25.55 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=25.4
Q ss_pred cCeEEEEEEEeCCCCCCccCCccchhHHHHHHHHHHHHhhh
Q psy104 25 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 65 (86)
Q Consensus 25 ~~~~l~LtIidTpGfGd~i~n~~~~~~i~~yI~~qf~~yl~ 65 (86)
.++| -|+++|||||- .....-+.-+.+++...+..|-.
T Consensus 360 ~~iP-lv~lvDtpGf~--~G~~~E~~Gi~~~~A~~l~a~a~ 397 (523)
T 1on3_A 360 FNIP-LVQLVDVPGFL--PGVQQEYGGIIRHGAKMLYAYSE 397 (523)
T ss_dssp TTCC-EEEEEEECCBC--CCHHHHHTTHHHHHHHHHHHHHH
T ss_pred cCCC-eEEEEeCCCcC--cchHHHHhhHHHHHHHHHHHHhc
Confidence 3455 47899999995 44444466677777777666643
No 192
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=25.85 E-value=35 Score=19.35 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=17.5
Q ss_pred eCCCCCC-ccCCccchhHHHHHHHHHH
Q psy104 35 DTPGFGD-SINSEESWRACCSYIDDQF 60 (86)
Q Consensus 35 dTpGfGd-~i~n~~~~~~i~~yI~~qf 60 (86)
-.|+|++ .+. ......|+.||..+|
T Consensus 73 ~MP~~~~~~Ls-d~ei~~l~~Yi~~~~ 98 (99)
T 3dp5_A 73 GMPAFGEAMIP-PADALKIGEYVVASF 98 (99)
T ss_dssp TSCCCCTTTSC-HHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCC-HHHHHHHHHHHHHhC
Confidence 4788987 444 345778888988764
No 193
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=25.74 E-value=8.4 Score=29.55 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=9.8
Q ss_pred EEEEEEeCCCCCCccCC
Q psy104 29 LRLTVVDTPGFGDSINS 45 (86)
Q Consensus 29 l~LtIidTpGfGd~i~n 45 (86)
..++++||||..+.+.+
T Consensus 255 ~~i~iiDTPGh~~f~~~ 271 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG 271 (592)
T ss_dssp ----CCEEESSSEEEEE
T ss_pred eEEEEEECCChHHHHHH
Confidence 57889999998765433
No 194
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=25.60 E-value=1.1e+02 Score=24.67 Aligned_cols=34 Identities=24% Similarity=0.538 Sum_probs=25.3
Q ss_pred EEEEEEeCCCCCCccCCccchhH-HHHHHHHHHHHhh
Q psy104 29 LRLTVVDTPGFGDSINSEESWRA-CCSYIDDQFRQYF 64 (86)
Q Consensus 29 l~LtIidTpGfGd~i~n~~~~~~-i~~yI~~qf~~yl 64 (86)
..+-|+|.+||=..-. ++|+. .++|-.++...|+
T Consensus 455 ~~IGvLDI~GFE~f~~--NsFEQlCINyaNEkLQq~F 489 (783)
T 4db1_A 455 YFIGVLDIAGFEIFDF--NSFEQLCINFTNEKLQQFF 489 (783)
T ss_dssp EEEEEEECCCCCCCSS--CCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecccccccccc--CCHHHHHHHHHHHHHHHHH
Confidence 5678999999975543 45664 4899998888775
No 195
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=25.50 E-value=66 Score=18.56 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=16.9
Q ss_pred CCCCCCccCCccchhHHHHHHHHHHHHhhhhh
Q psy104 36 TPGFGDSINSEESWRACCSYIDDQFRQYFNDE 67 (86)
Q Consensus 36 TpGfGd~i~n~~~~~~i~~yI~~qf~~yl~eE 67 (86)
-|||| ..|.+.|++....|..+.
T Consensus 63 L~giG---------~ki~~~L~e~L~~~c~en 85 (87)
T 2kp7_A 63 LQHFG---------DRLCRMLDEKLKQHLASG 85 (87)
T ss_dssp CTTTC---------HHHHHHHHHHHHHHHHHS
T ss_pred hhccc---------HHHHHHHHHHHHHHHHHc
Confidence 36787 356788888888887763
No 196
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=24.79 E-value=15 Score=22.52 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=11.6
Q ss_pred EEEEEEEeCCCCCCc
Q psy104 28 KLRLTVVDTPGFGDS 42 (86)
Q Consensus 28 ~l~LtIidTpGfGd~ 42 (86)
.+.+.++||||+...
T Consensus 90 ~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 90 GSGVTLVDFPGHVKL 104 (193)
T ss_dssp CTTCSEEEETTCCBS
T ss_pred CCeEEEEECCCCchH
Confidence 456789999998654
No 197
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=24.09 E-value=45 Score=23.34 Aligned_cols=13 Identities=46% Similarity=0.938 Sum_probs=10.8
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
..+.++||||+.+
T Consensus 214 ~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 214 FRYQIIDTPGLLD 226 (357)
T ss_dssp EEEEEEECTTTSS
T ss_pred ceEEEEeCCCccc
Confidence 4688999999965
No 198
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=23.99 E-value=38 Score=26.02 Aligned_cols=14 Identities=43% Similarity=0.724 Sum_probs=11.2
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
.+++++||||.-+.
T Consensus 245 ~~~~iiDTPG~e~f 258 (611)
T 3izq_1 245 ANFTIVDAPGHRDF 258 (611)
T ss_dssp CEEEEEECCSSSCH
T ss_pred ceEEEEECCCCccc
Confidence 47899999998543
No 199
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=23.57 E-value=37 Score=23.58 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=8.1
Q ss_pred EEEEEEeCCCCC
Q psy104 29 LRLTVVDTPGFG 40 (86)
Q Consensus 29 l~LtIidTpGfG 40 (86)
++|+++||||-.
T Consensus 209 ~~l~i~Dt~G~~ 220 (329)
T 3o47_A 209 ISFTVWDVGGQD 220 (329)
T ss_dssp EEEEEEECC---
T ss_pred EEEEEEECCCCH
Confidence 678999999943
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=23.33 E-value=30 Score=24.93 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.0
Q ss_pred eEEEEEEEeCCCCCC
Q psy104 27 VKLRLTVVDTPGFGD 41 (86)
Q Consensus 27 ~~l~LtIidTpGfGd 41 (86)
.+..+.++||||+..
T Consensus 67 ~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 67 VPTHVEFVDIAGLVK 81 (368)
T ss_dssp ECCEEEEEECCSCCC
T ss_pred CCceEEEEECCCccc
Confidence 356799999999854
No 201
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=23.18 E-value=19 Score=22.47 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=12.4
Q ss_pred CeEEEEEEEeCCCCCC
Q psy104 26 GVKLRLTVVDTPGFGD 41 (86)
Q Consensus 26 ~~~l~LtIidTpGfGd 41 (86)
+-.+.|.++||||-..
T Consensus 66 ~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMD 81 (196)
T ss_dssp TTSCCEEEEECCSSCC
T ss_pred CCeeEEEEEECCCCHH
Confidence 4457899999999654
No 202
>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M
Probab=22.67 E-value=70 Score=19.90 Aligned_cols=34 Identities=9% Similarity=0.208 Sum_probs=22.1
Q ss_pred chhHHHHHH--HHHHHHhhhhhcCCccC--CCCCCeeEE
Q psy104 48 SWRACCSYI--DDQFRQYFNDESGLNRK--NIVDNREVV 82 (86)
Q Consensus 48 ~~~~i~~yI--~~qf~~yl~eE~~i~R~--~~~D~RVH~ 82 (86)
|-.|+.+=| -+.|+.||++-.+++.. ++.| .|++
T Consensus 21 ct~PveD~I~d~a~fekfL~erIKV~gk~gnLg~-~V~i 58 (118)
T 4a18_M 21 CSQPVEDKVILIGEFAEFLKSKIKVGGKLGNLGE-NITI 58 (118)
T ss_dssp CHHHHHTTCCCHHHHHHHHHHHCCBTTBSSCCTT-TEEE
T ss_pred ccCcccCceecHHHHHHHHHHHhhccCcccccCC-eEEE
Confidence 445554422 25799999999999764 5555 3544
No 203
>3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP}
Probab=22.61 E-value=1.3e+02 Score=20.17 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=16.4
Q ss_pred EEEEEEeCCCCCCccCCccchhHHHHHHH
Q psy104 29 LRLTVVDTPGFGDSINSEESWRACCSYID 57 (86)
Q Consensus 29 l~LtIidTpGfGd~i~n~~~~~~i~~yI~ 57 (86)
+.+-.+|-||+|..-....++..+.+.+.
T Consensus 110 ~~v~~~d~~G~G~~~~~~~~~~~~~~~~~ 138 (319)
T 3lcr_A 110 RRVSALVPPGFHGGQALPATLTVLVRSLA 138 (319)
T ss_dssp SEEEEEECTTSSTTCCEESSHHHHHHHHH
T ss_pred ceEEEeeCCCCCCCCCCCCCHHHHHHHHH
Confidence 34567888888865443344444444333
No 204
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=22.43 E-value=56 Score=24.97 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=24.6
Q ss_pred cCeEEEEEEEeCCCCCCccCCccchhHHHHHHHHHHHHhh
Q psy104 25 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF 64 (86)
Q Consensus 25 ~~~~l~LtIidTpGfGd~i~n~~~~~~i~~yI~~qf~~yl 64 (86)
.++| -++++|||||- .....-+.-+..++..-+..|-
T Consensus 364 ~~~P-lv~lvDtpG~~--~G~~~E~~g~~~~~A~~~~a~~ 400 (527)
T 1vrg_A 364 FNIP-ILTFVDTPGYL--PGVAQEHGGIIRHGAKLLYAYS 400 (527)
T ss_dssp TTCC-EEEEEEECCBC--CCHHHHHTTHHHHHHHHHHHHH
T ss_pred cCCC-eEEEecCCCCc--CchhhHHhHHHHHHHHHHHHHh
Confidence 3455 47899999995 4444445567777777666553
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=22.22 E-value=32 Score=25.04 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=9.5
Q ss_pred EEEEEEeCCCCC
Q psy104 29 LRLTVVDTPGFG 40 (86)
Q Consensus 29 l~LtIidTpGfG 40 (86)
.++.++||||+=
T Consensus 119 ~~i~l~D~pGl~ 130 (376)
T 4a9a_A 119 AKIQMLDLPGII 130 (376)
T ss_dssp EEEEEEECGGGC
T ss_pred cEEEEEeCCCcc
Confidence 356799999993
No 206
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=21.96 E-value=1.4e+02 Score=23.99 Aligned_cols=35 Identities=26% Similarity=0.540 Sum_probs=25.4
Q ss_pred EEEEEEEeCCCCCCccCCccchhH-HHHHHHHHHHHhh
Q psy104 28 KLRLTVVDTPGFGDSINSEESWRA-CCSYIDDQFRQYF 64 (86)
Q Consensus 28 ~l~LtIidTpGfGd~i~n~~~~~~-i~~yI~~qf~~yl 64 (86)
...+.|.|.+||=..- .++|+. .++|-.++...++
T Consensus 447 ~~~IGvLDI~GFE~F~--~NsFEQlCINyaNEkLQq~F 482 (770)
T 1w9i_A 447 AYFIGVLDIYGFEIFK--VNSFEQLCINYTNEKLQQFF 482 (770)
T ss_dssp SEEEEEEECCCCCCCS--SCCHHHHHHHHHHHHHHHHH
T ss_pred CCeeeeccCccccccc--cCCHHHHHHHhhHHHHHHHH
Confidence 4567899999996443 346664 4899988877774
No 207
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=21.86 E-value=51 Score=24.84 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=16.7
Q ss_pred cCeEEEEEEEeCCCCCCccC
Q psy104 25 RGVKLRLTVVDTPGFGDSIN 44 (86)
Q Consensus 25 ~~~~l~LtIidTpGfGd~i~ 44 (86)
+|-...+-++||+|+||.-.
T Consensus 136 ~g~~~~vlllDTEG~~d~~~ 155 (457)
T 4ido_A 136 DGKKVAVLLMDTQGTFDSQS 155 (457)
T ss_dssp TSCEEEEEEEEECCBTCTTC
T ss_pred CCCeeEEEEEeccCCCCccc
Confidence 66778999999999997744
No 208
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Probab=21.77 E-value=1.4e+02 Score=18.77 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=11.2
Q ss_pred EEEEEEeCCCCCCccCC
Q psy104 29 LRLTVVDTPGFGDSINS 45 (86)
Q Consensus 29 l~LtIidTpGfGd~i~n 45 (86)
.++-.+|-||+|.+-..
T Consensus 43 ~~vi~~Dl~G~G~S~~~ 59 (269)
T 2xmz_A 43 YHVITIDLPGHGEDQSS 59 (269)
T ss_dssp SEEEEECCTTSTTCCCC
T ss_pred CeEEEecCCCCCCCCCC
Confidence 45567788888876543
No 209
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=21.77 E-value=37 Score=18.84 Aligned_cols=21 Identities=14% Similarity=0.485 Sum_probs=11.3
Q ss_pred CCCccCCccchhHHHHHHHHHH
Q psy104 39 FGDSINSEESWRACCSYIDDQF 60 (86)
Q Consensus 39 fGd~i~n~~~~~~i~~yI~~qf 60 (86)
||..+. ...+..|++|+...|
T Consensus 61 ~g~~ls-~~e~~~I~~YL~~~y 81 (81)
T 2blf_B 61 YHAPVD-EADAKAIADYLAKTY 81 (81)
T ss_dssp SCCCCC-HHHHHHHHHHHHHHC
T ss_pred cCCCCC-HHHHHHHHHHHHHhC
Confidence 454332 335666777776543
No 210
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=21.71 E-value=44 Score=23.83 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=10.6
Q ss_pred EEEEEEeCCCCCCc
Q psy104 29 LRLTVVDTPGFGDS 42 (86)
Q Consensus 29 l~LtIidTpGfGd~ 42 (86)
..+.++|||||-..
T Consensus 226 ~~v~l~DT~G~i~~ 239 (364)
T 2qtf_A 226 RKIMLVDTVGFIRG 239 (364)
T ss_dssp EEEEEEECCCBCSS
T ss_pred EEEEEEeCCCchhc
Confidence 35688999999543
No 211
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=21.40 E-value=1e+02 Score=23.57 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=8.2
Q ss_pred EEEEEeCCCCCCc
Q psy104 30 RLTVVDTPGFGDS 42 (86)
Q Consensus 30 ~LtIidTpGfGd~ 42 (86)
.|+++|.||+|..
T Consensus 148 ~LlLlDePGi~~~ 160 (608)
T 3szr_A 148 DLTLIDLPGITRV 160 (608)
T ss_dssp CEEEEECCC----
T ss_pred ceeEeeCCCcccc
Confidence 5899999999864
No 212
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B
Probab=21.32 E-value=32 Score=26.61 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=22.2
Q ss_pred cCeEEEEEEEeCCCCCCccCCccchhHHHHHHHHHHHHh
Q psy104 25 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQY 63 (86)
Q Consensus 25 ~~~~l~LtIidTpGfGd~i~n~~~~~~i~~yI~~qf~~y 63 (86)
.++|| |+++|||||= .....-+.-|.+++..-+..|
T Consensus 386 ~~iPl-v~lvDtpGf~--~G~~~E~~Gi~~~gAk~~~a~ 421 (555)
T 3u9r_B 386 RGIPL-LFLQNITGFM--VGQKYEAGGIAKHGAKLVTAV 421 (555)
T ss_dssp HTCCE-EEEEEECCBC--CSHHHHHTTHHHHHHHHHHHH
T ss_pred CCCCE-EEEecCcCCC--CCHHHHHHHHHHHHHHHHHHH
Confidence 35665 8899999984 333333455666666555544
No 213
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida}
Probab=21.19 E-value=1.5e+02 Score=18.13 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=10.8
Q ss_pred EEEEEEeCCCCCCccC
Q psy104 29 LRLTVVDTPGFGDSIN 44 (86)
Q Consensus 29 l~LtIidTpGfGd~i~ 44 (86)
+++-.+|-||+|.+-.
T Consensus 48 ~~v~~~D~~G~G~S~~ 63 (264)
T 3ibt_A 48 FHVICPDWRGHDAKQT 63 (264)
T ss_dssp SEEEEECCTTCSTTCC
T ss_pred CcEEEEccccCCCCCC
Confidence 4556778888886653
No 214
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=21.16 E-value=46 Score=22.60 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=11.7
Q ss_pred EEEEEEEeCCCCCCc
Q psy104 28 KLRLTVVDTPGFGDS 42 (86)
Q Consensus 28 ~l~LtIidTpGfGd~ 42 (86)
...+.++||||....
T Consensus 48 ~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSM 62 (272)
T ss_dssp CTTEEEEECCCCSCS
T ss_pred CCeEEEEECCCcCcc
Confidence 456889999998654
No 215
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=21.14 E-value=26 Score=26.46 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=11.1
Q ss_pred EEEEEeCCCCCCcc
Q psy104 30 RLTVVDTPGFGDSI 43 (86)
Q Consensus 30 ~LtIidTpGfGd~i 43 (86)
.++++||||.-+..
T Consensus 52 ~i~~iDTPGhe~f~ 65 (501)
T 1zo1_I 52 MITFLDTPGHAAFT 65 (501)
T ss_dssp CCCEECCCTTTCCT
T ss_pred EEEEEECCCcHHHH
Confidence 57899999986553
No 216
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=21.13 E-value=57 Score=23.23 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=18.3
Q ss_pred cceEEEEEEEEEeecCeEEEEEEEeCCCCC
Q psy104 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 11 ~t~~I~~~~~~l~e~~~~l~LtIidTpGfG 40 (86)
+|+.+...++.+. .++|.|.||+|=-
T Consensus 179 ~T~Gi~~~~~~~~----~~~l~iwDt~GQe 204 (353)
T 1cip_A 179 KTTGIVETHFTFK----DLHFKMFDVGGQR 204 (353)
T ss_dssp CCCSEEEEEEEET----TEEEEEEEECCSG
T ss_pred ceeceEEEEEeeC----CeeEEEEeCCCch
Confidence 4666666666553 4789999999943
No 217
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=20.83 E-value=38 Score=25.11 Aligned_cols=13 Identities=54% Similarity=1.020 Sum_probs=10.7
Q ss_pred EEEEEEeCCCCCC
Q psy104 29 LRLTVVDTPGFGD 41 (86)
Q Consensus 29 l~LtIidTpGfGd 41 (86)
..++++||||.-+
T Consensus 73 ~~i~iiDtPGh~~ 85 (482)
T 1wb1_A 73 YRITLVDAPGHAD 85 (482)
T ss_dssp EEEEECCCSSHHH
T ss_pred EEEEEEECCChHH
Confidence 5799999999743
No 218
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=20.66 E-value=96 Score=15.74 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=12.7
Q ss_pred CCCCccCCcc-chhHHHHHHHHHHHH
Q psy104 38 GFGDSINSEE-SWRACCSYIDDQFRQ 62 (86)
Q Consensus 38 GfGd~i~n~~-~~~~i~~yI~~qf~~ 62 (86)
||||..+... +-.-+.+.+.++...
T Consensus 12 ~fGD~~~P~~ETv~llEeiV~~~i~~ 37 (45)
T 1bh9_A 12 GFGDDQNPYTESVDILEDLVIEFITE 37 (45)
T ss_dssp HTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 7898766553 333334444444433
No 219
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=20.55 E-value=72 Score=22.78 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=16.7
Q ss_pred cceEEEEEEEEEeecCeEEEEEEEeCCCCC
Q psy104 11 KTTTIEKKSMDIEERGVKLRLTVVDTPGFG 40 (86)
Q Consensus 11 ~t~~I~~~~~~l~e~~~~l~LtIidTpGfG 40 (86)
+|+.+..+.+.+. .++|.|.||+|--
T Consensus 187 ~T~Gi~~~~~~~~----~~~l~i~Dt~Gq~ 212 (362)
T 1zcb_A 187 PTKGIHEYDFEIK----NVPFKMVDVGGQR 212 (362)
T ss_dssp CCSSEEEEEEEET----TEEEEEEEECC--
T ss_pred CccceEEEEeeeC----CeEEEEEeccchh
Confidence 3555666655553 3788999999953
No 220
>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39
Probab=20.38 E-value=1.3e+02 Score=16.99 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=14.3
Q ss_pred EEEEEEeCCCCCCccCCcc
Q psy104 29 LRLTVVDTPGFGDSINSEE 47 (86)
Q Consensus 29 l~LtIidTpGfGd~i~n~~ 47 (86)
..+-.+|-||+|.+-....
T Consensus 43 ~~v~~~d~~G~G~s~~~~~ 61 (131)
T 2dst_A 43 YAFYLLDLPGYGRTEGPRM 61 (131)
T ss_dssp SEEEEECCTTSTTCCCCCC
T ss_pred cEEEEECCCCCCCCCCCCC
Confidence 5667899999998765543
No 221
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=20.16 E-value=25 Score=18.90 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=15.8
Q ss_pred eCCCCCCccCCccchhHHHHHHHHH
Q psy104 35 DTPGFGDSINSEESWRACCSYIDDQ 59 (86)
Q Consensus 35 dTpGfGd~i~n~~~~~~i~~yI~~q 59 (86)
--|+|+..+..+ ....|+.||..+
T Consensus 54 ~Mp~~~~~Lsd~-ei~~l~~yi~~~ 77 (78)
T 1gks_A 54 AMPAYDGRADRE-DLVKAIEYMLST 77 (78)
T ss_dssp TBCCCBTTBCHH-HHHHHHHHHHTT
T ss_pred CCCCCCCCCCHH-HHHHHHHHHHhh
Confidence 368888766543 466778887654
Done!