RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy104
(86 letters)
>d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId:
1831]}
Length = 281
Score = 27.2 bits (58), Expect = 0.23
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 14/65 (21%)
Query: 19 SMDIEER-----GVKLRLTVVDTP---------GFGDSINSEESWRACCSYIDDQFRQYF 64
+++I E+ + V P G G ++ +WR + + F
Sbjct: 1 TVEIIEKRFPSGTLASHALVAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVA 60
Query: 65 NDESG 69
D G
Sbjct: 61 PDLIG 65
>d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2)
{Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 258
Score = 27.2 bits (58), Expect = 0.27
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 30 RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 65
++T +D G + E R Y +
Sbjct: 31 KVTALDLAASGTDLRKIEELRTLYDYTLPLMELMES 66
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 25.8 bits (56), Expect = 0.61
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 5 GNNRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 41
G N GKTTTI K + G K+ DT
Sbjct: 13 GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAG 49
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 25.7 bits (55), Expect = 0.70
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 5 GNNRQGKTTTIEKKSMDIEERGVKLRLTVVDTP 37
G GKTT I K S ++ GV + +
Sbjct: 8 GPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEV 40
>d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC
{Janthinobacterium sp. J3 [TaxId: 213804]}
Length = 268
Score = 25.6 bits (54), Expect = 0.92
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 22 IEERGVKLRL-------TVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND 66
+ GV+ R V+ G G SE +WR + +R D
Sbjct: 7 VNAGGVETRYLEAGKGQPVILIHGGGAGAESEGNWRNVIPILARHYRVIAMD 58
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
{Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Length = 350
Score = 25.0 bits (54), Expect = 1.1
Identities = 5/31 (16%), Positives = 19/31 (61%)
Query: 54 SYIDDQFRQYFNDESGLNRKNIVDNREVVDK 84
+Y+ D ++QY+ + +++D+ ++ ++
Sbjct: 3 NYVFDIWKQYYPQPVEIKHDHVLDHYDIHEE 33
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 24.8 bits (53), Expect = 1.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 10 GKTTTIEKKSMDIEERGVKLRLTVVDT 36
GK+TTI+ + G K+ + VD
Sbjct: 63 GKSTTIDALGSLLTAAGHKVAVLAVDP 89
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 24.7 bits (53), Expect = 1.8
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 5 GNNRQGKTTTIEKKSMDIEERGVKLRLTVVDT 36
G GK TT K + +++G K+ L D
Sbjct: 19 GVQGTGKATTAGKLAYFYKKKGFKVGLVGADV 50
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 24.3 bits (52), Expect = 2.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 5 GNNRQGKTTTIEKKSMDIEERGVKLRLTVVDT 36
G GKTTT K ++ + +G + L DT
Sbjct: 17 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 48
>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId:
42739]}
Length = 319
Score = 24.0 bits (51), Expect = 3.2
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 30 RLTVVDTPGFGDSINSEESWRACCSYIDD 58
++ V + GF +Y+
Sbjct: 43 KVYVANLSGFQSDDGPNGRGEQLLAYVKQ 71
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 23.9 bits (51), Expect = 3.2
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 5 GNNRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF 64
G N GKTT+ K + + G + L DT + E + + +
Sbjct: 18 GVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT----FRAAAIEQLKIWGERVGATVISHS 73
Query: 65 NDES 68
Sbjct: 74 EGAD 77
>d1w79a1 e.3.1.3 (A:1-467) D-alanyl-D-alanine carboxypeptidase Dac
{Actinomadura sp. [TaxId: 1989]}
Length = 467
Score = 24.1 bits (51), Expect = 3.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 64 FNDESGLNRKNIVDNREVVD 83
ND SGL+R N+V VVD
Sbjct: 343 LNDGSGLSRGNLVTADTVVD 362
>d2d0ob1 c.51.3.2 (B:5-112) Diol dehydratase-reactivating factor
small subunit DdrB {Klebsiella oxytoca [TaxId: 571]}
Length = 108
Score = 23.2 bits (50), Expect = 4.0
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 22 IEERGVKLRLTVVDT 36
IEE G+ RL
Sbjct: 25 IEEEGIPFRLQHHPA 39
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 23.5 bits (50), Expect = 4.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 5 GNNRQGKTTTIEKKSMDIEERGVKLRLTVVDT 36
G N GKTTTI K + E++G + L DT
Sbjct: 16 GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 47
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 23.2 bits (50), Expect = 6.9
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 13 TTIEKKSMDIEERGVKLRLTVVDTP 37
I + +M E RG+KL +D P
Sbjct: 299 DKIVQIAM--ETRGIKLTKIKLDLP 321
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 23.0 bits (48), Expect = 7.0
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 5 GNNRQGKTTTIEKKSMDIEERGVKLRLTVVDTP 37
G G TT+ + ++ + GV ++ +
Sbjct: 8 GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.375
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 317,767
Number of extensions: 12600
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 19
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)