BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1040
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 151/581 (25%), Positives = 252/581 (43%), Gaps = 64/581 (11%)
Query: 75 EYDFXXXXXXXXXXXXXXRLVENPNWKVLLLEAGPDEPTVTSV------PGFAASAVGTH 128
++D+ RL E+P+ VL+LEAG + V PG +++
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSI--- 58
Query: 129 LDWKYKTERNKYACLSTGGICEWPRGKMLXXXXXXXXXXYTRSHPSIYDEWQR-QGNPGW 187
DW Y T G +PRG+ML R +D + G+ GW
Sbjct: 59 FDWNYTTTAQ---AGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGW 115
Query: 188 GFSDVLRYFIKSE--------HNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGK 239
+ ++ ++ K+E HN + + + P HG +G + + P+ + ++ +
Sbjct: 116 NWDNIQQFVRKNEMVVPPADNHNTSGEFI-PAVHGTNGSVSISLPGFPTPLDDRVLATTQ 174
Query: 240 ELG---YASGDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKL 296
E + + D + +G++++ V NG RSS+ +LR + NL V +NA V KL
Sbjct: 175 EQSEEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKL 234
Query: 297 NIDPKTKRALS----VQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLD 352
++ T L V++ + TV AKKE++L+AG++G+P LL LSG+G ++ L
Sbjct: 235 -VNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLS 293
Query: 353 ELGIETI-SDLRVGYNLVHHVGANLKFSILDNGVSDN--------NGEIDEKGTYLEESN 403
+GI+TI ++ VG NL H+ F + N DN N ++D+ +
Sbjct: 294 SVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQ---WTNTRT 350
Query: 404 EGLSSMKGNMDEMLNDGRPGRSILSNTF------------NALFSNNNKEEDKMPCGRRS 451
L+++ N L P S + TF +FSN +P
Sbjct: 351 GPLTALIANHLAWLR--LPSNSSIFQTFPDPAAGPNSAHWETIFSNQ-WFHPAIPRPDTG 407
Query: 452 IYARPTNLL--PISRGRLVLRSADPFEYPKIHSNYLVMKQDXXXXXXXXXXXQKLTRTKA 509
+ TN L P++RG + L +++PF+ P I+ YL + D + +A
Sbjct: 408 SFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQA 467
Query: 510 LQKWDFQIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQ 569
DF I P + D+ E YI+ HP GT M P VVD
Sbjct: 468 WA--DFVIRPFD-PRLRDPTDDA--AIESYIRDNANTIFHPVGTASMSPRGASWGVVDPD 522
Query: 570 LRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
L++ GV LR++D SI P N++ I ++ ++GAD++K
Sbjct: 523 LKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIK 563
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 137/547 (25%), Positives = 225/547 (41%), Gaps = 39/547 (7%)
Query: 75 EYDFXXXXXXXXXXXXXXRLVENPNWKVLLLEAGPDEPTVTSVPGFA--ASAVGTHLDWK 132
E+D+ RL E+P V L+EAGPD+ V V + + DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 133 YKTERNKYACLSTGGICEWPRGKMLXXXXXXXXXXYTRSHPSIYDEWQ-RQGNPGWGFSD 191
Y E + + R K++ + DEW+ + G GW
Sbjct: 73 YPIEPQE----NGNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEA 128
Query: 192 VLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYASGDFNGA 251
+ + E N + D +HG GP+ + P G ++ A ++ G FN
Sbjct: 129 AWPLYKRLETNEDAGP-DAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTG 187
Query: 252 NQI--GVNFAQV-MVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSV 308
+ G NF Q+ +G RSS+ ++ +Q+N + +L D +R V
Sbjct: 188 TTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGV 246
Query: 309 QFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYN 367
D+ + A+ E++L+ GAI +P+LLMLSG+GP +HL E GIE + D VG +
Sbjct: 247 DIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEH 306
Query: 368 LVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSIL 427
L H ++F V+++ + E G + + +GL R L
Sbjct: 307 LQDHPEGVVQFEAKQPMVAEST-QWWEIGIFT-PTEDGLD----------------RPDL 348
Query: 428 SNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYPKIHSNYLVM 487
+ ++ + N P P SRG + LRS D + P + Y
Sbjct: 349 MMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTD 408
Query: 488 KQ--DXXXXXXXXXXXQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYIKTYTL 545
+ D +++ A+ +W T E ++E + YI+
Sbjct: 409 PEGHDMRVMVAGIRKAREIAAQPAMAEW------TGRELSPGVEAQTDEELQDYIRKTHN 462
Query: 546 PENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKG 605
HP GT +MG +D S +D +LR+ GV LRV DAS+ P ++ NP T++MI E+
Sbjct: 463 TAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERC 522
Query: 606 ADMVKES 612
AD+++ +
Sbjct: 523 ADLIRSA 529
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/547 (25%), Positives = 225/547 (41%), Gaps = 39/547 (7%)
Query: 75 EYDFXXXXXXXXXXXXXXRLVENPNWKVLLLEAGPDEPTVTSVPGFA--ASAVGTHLDWK 132
E+D+ RL E+P V L+EAGPD+ V V + + DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 133 YKTERNKYACLSTGGICEWPRGKMLXXXXXXXXXXYTRSHPSIYDEWQ-RQGNPGWGFSD 191
Y E + + R K++ + DEW+ + G GW
Sbjct: 73 YPIEPQE----NGNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEA 128
Query: 192 VLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYASGDFNGA 251
+ + E N + D +HG GP+ + P G ++ A ++ G FN
Sbjct: 129 AWPLYKRLETNEDAGP-DAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTG 187
Query: 252 NQI--GVNFAQV-MVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSV 308
+ G NF Q+ +G RSS+ ++ +Q+N + +L D +R V
Sbjct: 188 TTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGV 246
Query: 309 QFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYN 367
D+ + A+ E++L+ GAI +P+LLMLSG+GP +HL E GIE + D VG +
Sbjct: 247 DIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEH 306
Query: 368 LVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSIL 427
L H ++F V+++ + E G + + +GL R L
Sbjct: 307 LQDHPEGVVQFEAKQPMVAEST-QWWEIGIFT-PTEDGLD----------------RPDL 348
Query: 428 SNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYPKIHSNYLVM 487
+ ++ + N P P SRG + LRS D + P + Y
Sbjct: 349 MMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTD 408
Query: 488 KQ--DXXXXXXXXXXXQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYIKTYTL 545
+ D +++ A+ +W T E ++E + YI+
Sbjct: 409 PEGHDMRVMVAGIRKAREIAAQPAMAEW------TGRELSPGVEAQTDEELQDYIRKTHN 462
Query: 546 PENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKG 605
HP GT +MG +D S +D +LR+ GV LRV DAS+ P ++ NP T++MI E+
Sbjct: 463 TVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERC 522
Query: 606 ADMVKES 612
AD+++ +
Sbjct: 523 ADLIRSA 529
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/547 (25%), Positives = 225/547 (41%), Gaps = 39/547 (7%)
Query: 75 EYDFXXXXXXXXXXXXXXRLVENPNWKVLLLEAGPDEPTVTSVPGFA--ASAVGTHLDWK 132
E+D+ RL E+P V L+EAGPD+ V V + + DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 133 YKTERNKYACLSTGGICEWPRGKMLXXXXXXXXXXYTRSHPSIYDEWQ-RQGNPGWGFSD 191
Y E + + R K++ + DEW+ + G GW
Sbjct: 73 YPIEPQE----NGNSFMRHARAKVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAEA 128
Query: 192 VLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYASGDFNGA 251
+ + E N + D +HG GP+ + P G ++ A ++ G FN
Sbjct: 129 AWPLYKRLETNEDAGP-DAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTG 187
Query: 252 NQI--GVNFAQV-MVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSV 308
+ G NF Q+ +G RSS+ ++ +Q+N + +L D +R V
Sbjct: 188 TTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGV 246
Query: 309 QFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYN 367
D+ + A+ E++L+ GAI +P+LLMLSG+GP +HL E GIE + D VG +
Sbjct: 247 DIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEH 306
Query: 368 LVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSIL 427
L H ++F V+++ + E G + + +GL R L
Sbjct: 307 LQDHPEGVVQFEAKQPMVAEST-QWWEIGIFT-PTEDGLD----------------RPDL 348
Query: 428 SNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYPKIHSNYLVM 487
+ ++ + N P P SRG + LRS D + P + Y
Sbjct: 349 MMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTD 408
Query: 488 KQ--DXXXXXXXXXXXQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYIKTYTL 545
+ D +++ A+ +W T E ++E + YI+
Sbjct: 409 PEGHDMRVMVAGIRKAREIAAQPAMAEW------TGRELSPGVEAQTDEELQDYIRKTHN 462
Query: 546 PENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKG 605
HP GT +MG +D S +D +LR+ GV LRV DAS+ P ++ NP T++MI E+
Sbjct: 463 TVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERC 522
Query: 606 ADMVKES 612
AD+++ +
Sbjct: 523 ADLIRSA 529
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 147/564 (26%), Positives = 244/564 (43%), Gaps = 64/564 (11%)
Query: 93 RLVENPNWKVLLLEAGPDE----PTVTSVPGFAASAVGTHLDWKYKT----ERNKYACLS 144
RL ENPN VL++E+G E P + + + G+ +D Y+T N+ A +
Sbjct: 37 RLTENPNISVLVIESGSYESDRGPIIEDLNAYG-DIFGSSVDHAYETVELATNNQTALIR 95
Query: 145 TGGICEWPRGKMLXXXXXXXXXXYTRSHPSIYDEWQRQ-GNPGWGFSDVLRYFIKSEHNL 203
+G L +TR H + D W+ GN GW + +V Y +++E
Sbjct: 96 SG--------NGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERAR 147
Query: 204 --NRDQVDPEY------HGYDGPLKV---QRFSSYPPIGEDIIKAGKELGYASG-DFNGA 251
N Q+ + HG +G + Y PI + ++ A ++ G + DF
Sbjct: 148 APNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCG 207
Query: 252 NQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMK--LNIDPKTKRALSV 308
+ GV+ F + ++ VRS R +L Y++ NL+V +V K L+ + T RA+ V
Sbjct: 208 DPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGV 267
Query: 309 QFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRVGYNL 368
+F T+ V AK E++L AG+ SP +L SG+G KS L+ LGI+T+ DL VG NL
Sbjct: 268 EFG-THKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNL 326
Query: 369 VHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLN-------DGR 421
A ++ I G + + NE E+LN +
Sbjct: 327 QDQTTATVRSRITSAGAGQG------QAAWFATFNETFGDYSEKAHELLNTKLEQWAEEA 380
Query: 422 PGRSILSNTFNALFS---------NNNKEEDKMPCGRRSIYARPT-NLLPISRGRLVLRS 471
R NT L N+N ++ + + +LLP +RG + +
Sbjct: 381 VARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILD 440
Query: 472 ADPFEYPKIHS-NYLVMKQDXXXXXXXXXXXQKLTRTKALQKWDFQIDSTKMPECKHFEW 530
DP+ + + Y + + D + ++ + A+Q + +P + +
Sbjct: 441 KDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTY---FAGETIP-GDNLAY 496
Query: 531 DSN-EYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTN 589
D++ W YI + P H GTC M P + VVD R++GV LRV+D SI PT
Sbjct: 497 DADLSAWTEYIPYHFRPNYHGVGTCSMMP-KEMGGVVDNAARVYGVQGLRVIDGSIPPTQ 555
Query: 590 INSNPIATIIMIAEKGADMVKESW 613
++S+ + +A K +D + E +
Sbjct: 556 MSSHVMTVFYAMALKISDAILEDY 579
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 219/521 (42%), Gaps = 51/521 (9%)
Query: 93 RLVENPNWKVLLLEAGPDEPTVTSV--PGFAASAVGTHLDWKYKTERNKYACLSTGGICE 150
RL E+P+ +VLL+EAG +EPT + P + G DW Y+TE + G
Sbjct: 35 RLSEDPDSRVLLIEAG-EEPTDPDIWNPAAWPALQGRSYDWDYRTEAQAG---TAGRAHH 90
Query: 151 WPRGKMLXXXXXXXXXXYTRSHPSIYDEW-QRQGNPGWGFSDVLRYFIKSE-HNLNRDQV 208
W RG+++ Y R HPS + W G+ WG+ ++L F E H L D +
Sbjct: 91 WARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDGI 150
Query: 209 DPEYHGYDGPLKVQRFS-SYPPIGEDIIKAGKELGYASGD-FNGANQIGVNFAQVMVDNG 266
+ PL + + P+ I+AG LG + N IGV + + +G
Sbjct: 151 HGKGG----PLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDG 206
Query: 267 VRSSTPRMFLRDKYK-QDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKK 325
R + +L + + NL + + V +L ++ R+L V + +
Sbjct: 207 RRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQVRSLEVVGRQGSAEVFA-----D 261
Query: 326 EIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNLVHHVGANLKFSILDNG 384
+I+L AGA+ SP LLM SG+GP LD G+ + D+ +G NL H+
Sbjct: 262 QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKP 321
Query: 385 VSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSILSNTFNALFSNNNKEEDK 444
V + + E Y+ + + G + ++ G I+S +F A +
Sbjct: 322 VPPSRLQHSESMAYMRADS---FTAAGQPEIVVGCGVA--PIVSESFPAPAAG------- 369
Query: 445 MPCGRRSIYARPTNLL-PISRGRLVLRSADPFEYPKIHSNYLVMKQDXXXXXXXXXXXQK 503
S Y+ + P SRG + + + + I YL +D +
Sbjct: 370 ------SAYSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALEASRT 423
Query: 504 LTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYS 563
+ L W + P +S + +I + +HP GTC+MG D
Sbjct: 424 IGHRDELAGWRERELLPGTP-------NSAAEMDDFIARSVITHHHPCGTCRMG--KDPD 474
Query: 564 SVVDAQLRIHGVPNLRVMDASIFPTNINSNPI-ATIIMIAE 603
+VVDA LR+ + NL V+DASI P N+ + PI A ++ IAE
Sbjct: 475 AVVDANLRLKALDNLFVVDASIMP-NLTAGPIHAAVLAIAE 514
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 147/587 (25%), Positives = 230/587 (39%), Gaps = 75/587 (12%)
Query: 76 YDFXXXXXXXXXXXXXXRLVENPNWKVLLLEAG---PDEPTVTSVPGFAASAVGTHLDWK 132
+DF RL ENPN VL++EAG P++ + P A + DW
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 133 YKT---ERNKYACLSTGGICEWPRGKMLXXXXXXXXXXYTRSHPSIYDEWQRQGNPGWGF 189
YKT R+ Y + RGK L + H + +D+W+ G W +
Sbjct: 67 YKTTMVRRDDYERIEKPNT----RGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTW 122
Query: 190 SDVLRYFIKSEHNLNRDQV-DPEYH--GYDGPLKV---QRFSSYPPIGEDIIKAGKELG- 242
++ Y KS + ++ PE G GP+ + + P E++ KA K +G
Sbjct: 123 DPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQ 182
Query: 243 -YASGDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPK 301
++G G+ + G RS + +F+++K N+ + H +L I+
Sbjct: 183 PLIENIYDGEMD-GLTHCCDTIYRGQRSGS-FLFVKNK---PNITIVPEVHSKRLIINEA 237
Query: 302 TKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISD 361
+ V NE+ A +E+IL+ G +P+LLMLSG+GP L GI TI D
Sbjct: 238 DRTCKGVTVVTAAGNELNFF-ADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVD 296
Query: 362 LR-VGYNLVHHVGANLKFSILDN-GVSD------------------------NNGEIDEK 395
R VG NL+ H G + D G+ D +G ++
Sbjct: 297 SRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELV 356
Query: 396 G-----TYLEESNE--GLSSMKGNMDEMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCG 448
G YLE+ E + G D G+P + F +F + P
Sbjct: 357 GFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFEL---DFVCMFGTAFQWHFPTPKT 413
Query: 449 RRSIYARPTNLLPISR-GRLVLRSADPFEYPKIHSNYLVMKQDXXXXXXXXXXXQKLTRT 507
+ + PIS G + L SADPF+ P I+ N+ D L
Sbjct: 414 GDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLL-- 471
Query: 508 KALQKWDFQIDSTKMPECKHFEW----DSNEYWECYIKTYTLPENHPGGTCKMGPADDYS 563
F+ + K + W DS++ + HP GT ++ D
Sbjct: 472 -------FKGEGFKDLVESEYPWEMPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-Q 523
Query: 564 SVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
VVD +L++HG+ LRV DAS+ P + ++ + EK ADM+K
Sbjct: 524 GVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIK 570
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 131/575 (22%), Positives = 222/575 (38%), Gaps = 57/575 (9%)
Query: 74 EEYDFXXXXXXXXXXXXXXRLVENPNWKVLLLEAG---PDEPTVTSVPGFAASAVGTHLD 130
+ YD+ +L ENP KVL++E G ++ + P GT +D
Sbjct: 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVD 82
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLXXXXXXXXXXYTRSHPSIYDEWQRQ-GNPGWGF 189
Y T L GK L +TR D W++ G GW +
Sbjct: 83 QNYLT-----VPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNW 137
Query: 190 SDVLRYFIKSE-------------HNLNRDQVDPEYHGYDGPLKV-QRFSSYP--PIGED 233
++ Y K+E H+ N HG +G ++ R + P PI +
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFN-----ATCHGTNGTVQSGARDNGQPWSPIMKA 192
Query: 234 IIKAGKELGY-ASGDFNGANQIGVNFAQVMVD-NGVRSSTPRMFLRDKYKQDNLKVQLNA 291
++ LG DF + GV+ +D N VR R +L Y++ NL++
Sbjct: 193 LMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQ 252
Query: 292 HVMKLNIDPKTK--RALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKS 349
V K+ +A+ V F TN V AK E++L AG+ SP +L SG+G KS
Sbjct: 253 MVGKVLFKQTASGPQAVGVNFG-TNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKS 311
Query: 350 HLDELGIETISDLRVGYNLVHHVGANLKFSILDNGVSDNNGEI-----DEKGTYLEESNE 404
LD+ + + DL VG N+ + G + G Y ++ +
Sbjct: 312 VLDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANFTETFGDYAPQARD 371
Query: 405 GLSSMKGNMDEMLND--GRPG-------RSILSNTFNALFSNNNKEEDKMPCGRRSIYAR 455
L++ +D+ + R G + N N L + + I
Sbjct: 372 LLNT---KLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAFAELFMDTEGKINFD 428
Query: 456 PTNLLPISRGRLVLRSADPFEYPKIHS-NYLVMKQDXXXXXXXXXXXQKLTRTKALQKWD 514
+L+P +RG + + S+DP+ + + + + + D + LT A++++
Sbjct: 429 LWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEY- 487
Query: 515 FQIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHG 574
+P + + W Y+ P H +C M + + VVDA +++G
Sbjct: 488 --FAGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSM-MSRELGGVVDATAKVYG 544
Query: 575 VPNLRVMDASIFPTNINSNPIATIIMIAEKGADMV 609
LRV+D SI PT ++S+ + +A K AD +
Sbjct: 545 TQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAI 579
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 152/362 (41%), Gaps = 48/362 (13%)
Query: 264 DNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTK--RALSVQFKDTN-TNEIKT 320
+NG R ++ + +K +NL+V ++A V K+ + A+ V +KD+N T
Sbjct: 190 NNGTRHASDELL--NKGDPNNLRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAF 247
Query: 321 VKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRVGYNLVHHVGANLKFSI 380
V+ + E+I++AG IGSPQLL+LSGVGP+S+L L I + +H N +
Sbjct: 248 VRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINIL 307
Query: 381 LDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSILSNTFNALFSNNNK 440
N + + + G SS+ ++ P + ++TF A F N
Sbjct: 308 PPNPIEPST--VTVLGITSNFYQCSFSSLPFSIPPFAFFPNPTYPLPNSTF-AHFVN--- 361
Query: 441 EEDKMPCGRRSIYARPTNLLPISRGRLVLRS-ADPFEYPKIHSNYLVMKQDXXXXXXXXX 499
K+P P+S G + L S +D P + NY D
Sbjct: 362 ---KVPG-------------PLSYGSITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMK 405
Query: 500 XXQKLTRTKALQKWD---------FQIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHP 550
+L + AL+ + F I +PE + + +E + + H
Sbjct: 406 KIGELLSSDALKPYKVEDLPGIDGFDILGIPLPENQ----TDDAAFETFCREAVASYWHY 461
Query: 551 GGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEK-GADMV 609
G C +G V+D R+ G+ LRV+D S FP + S+P +M+ G+ ++
Sbjct: 462 HGGCLVG------EVLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRYVGSKIL 515
Query: 610 KE 611
+E
Sbjct: 516 QE 517
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 276 LRDKYKQDNLKVQLNAHVMKLNI-DPKTKRALSVQFKDTN-TNEIKTVKAKKEIILTAGA 333
L +K +NL+V ++A V K+ + A V ++D+N T V++K E+I++AG
Sbjct: 200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGT 259
Query: 334 IGSPQLLMLSGVGPKSHLDELGIETI 359
IG+PQLL+LSGVGP+S+L L I +
Sbjct: 260 IGTPQLLLLSGVGPESYLSSLNIPVV 285
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 20/152 (13%)
Query: 461 PISRGRLVLRSADPFEY-PKIHSNYLVMKQDXXXXXXXXXXXQKLTRTKALQKWD----- 514
P+S G L L+S+ P + NY D +L T AL+ +
Sbjct: 365 PLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLP 424
Query: 515 ----FQIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQL 570
F I +P+ + + +E + + H G C +G V+D
Sbjct: 425 GVEGFNILGIPLPK----DQTDDAAFETFCRESVASYWHYHGGCLVG------KVLDGDF 474
Query: 571 RIHGVPNLRVMDASIFPTNINSNPIATIIMIA 602
R+ G+ LRV+D S FP S+P +M+
Sbjct: 475 RVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 276 LRDKYKQDNLKVQLNAHVMKLNI-DPKTKRALSVQFKDTN-TNEIKTVKAKKEIILTAGA 333
L +K +NL+V ++A V K+ + A V ++D+N T V++K E+I++AG
Sbjct: 200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGT 259
Query: 334 IGSPQLLMLSGVGPKSHLDELGIETI 359
IG+PQLL+LSGVGP+S+L L I +
Sbjct: 260 IGTPQLLLLSGVGPESYLSSLNIPVV 285
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 20/152 (13%)
Query: 461 PISRGRLVLRSADPFEY-PKIHSNYLVMKQDXXXXXXXXXXXQKLTRTKALQKWD----- 514
P+S G L L+S+ P + NY D +L T AL+ +
Sbjct: 365 PLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLP 424
Query: 515 ----FQIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQL 570
F I +P+ + + +E + + H G C +G V+D
Sbjct: 425 GVEGFNILGIPLPK----DQTDDAAFETFCRESVASYWHYHGGCLVG------KVLDGDF 474
Query: 571 RIHGVPNLRVMDASIFPTNINSNPIATIIMIA 602
R+ G+ LRV+D S FP S+P +M+
Sbjct: 475 RVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 549 HPGGTCKMGPA-DDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
HP G C +G A DDY R+ G NL V D S+ P ++ NP TI +AE+ +
Sbjct: 440 HPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 492
Query: 608 MV 609
+
Sbjct: 493 RI 494
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 549 HPGGTCKMGPA-DDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
HP G C +G A DDY R+ G NL V D S+ P ++ NP TI +AE+ +
Sbjct: 442 HPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 608 MV 609
+
Sbjct: 495 RI 496
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 549 HPGGTCKMGPA-DDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
HP G C +G A DDY R+ G NL V D S+ P ++ NP TI +AE+ +
Sbjct: 442 HPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 608 MV 609
+
Sbjct: 495 RI 496
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 549 HPGGTCKMGPA-DDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
P G C +G A DDY R+ G NL V D S+ P ++ NP TI +AE+ +
Sbjct: 442 QPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 608 MV 609
+
Sbjct: 495 RI 496
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 549 HPGGTCKMGPA-DDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
P G C +G A DDY R+ G NL V D S+ P ++ NP TI +AE+ +
Sbjct: 442 QPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 608 MV 609
+
Sbjct: 495 RI 496
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 549 HPGGTCKMGPA-DDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
P G C +G A DDY R+ G NL V D S+ P ++ NP TI +AE+ +
Sbjct: 444 QPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 496
Query: 608 MV 609
+
Sbjct: 497 RI 498
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 549 HPGGTCKMGPA-DDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
+P G C +G A DDY R+ G NL V D S+ P ++ NP TI +AE+ +
Sbjct: 442 NPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 608 MV 609
+
Sbjct: 495 RI 496
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 265 NGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNT--NEIKTVK 322
NG R+ +L+ + N + N VM N+ + L VQ D N V
Sbjct: 186 NGKRAGPVATYLQTALARPNFTFKTN--VMVSNVVRNGSQILGVQTNDPTLGPNGFIPVT 243
Query: 323 AKKEIILTAGAIGSPQLLMLSGVGPKSHLDEL 354
K +IL+AGA G+ ++L SG+GP + +
Sbjct: 244 PKGRVILSAGAFGTSRILFQSGIGPTDMIQTV 275
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 521 KMPECKHFEWDSNEYWECYIKTY---TLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPN 577
+P D + E Y+ Y T+ NH + +G + S+VVD+ +++ G N
Sbjct: 444 SIPGLTMITPDVTQTLEEYVDAYDPATMNSNHWVSSTTIG-SSPQSAVVDSNVKVFGTNN 502
Query: 578 LRVMDASIFPTNINSNPIATIIMIAEKGADMV 609
L ++DA I P NP T++ AE+ A +
Sbjct: 503 LFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 534
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 265 NGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNT--NEIKTVK 322
NG R+ +L+ + N + N VM N+ + L VQ D N V
Sbjct: 191 NGKRAGPVATYLQTALARPNFTFKTN--VMVSNVVRNGSQILGVQTNDPTLGPNGFIPVT 248
Query: 323 AKKEIILTAGAIGSPQLLMLSGVGPKSHLDEL 354
K +IL+AGA G+ ++L SG+GP + +
Sbjct: 249 PKGRVILSAGAFGTSRILFQSGIGPTDMIQTV 280
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 521 KMPECKHFEWDSNEYWECYIKTY---TLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPN 577
+P D + E Y+ Y T+ NH + +G + S+VVD+ +++ G N
Sbjct: 449 SIPGLTMITPDVTQTLEEYVDAYDPATMNSNHWVSSTTIG-SSPQSAVVDSNVKVFGTNN 507
Query: 578 LRVMDASIFPTNINSNPIATIIMIAEKGADMV 609
L ++DA I P NP T++ AE+ A +
Sbjct: 508 LFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 539
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 549 HPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADM 608
HP G + A D R+ P L V+D S+ P N+ NP TI +AE+ D
Sbjct: 447 HPLGGVLLNKATDNFG------RLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDK 500
Query: 609 VKES 612
+ S
Sbjct: 501 IISS 504
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 520 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 579
Query: 608 MVKESW 613
+K+++
Sbjct: 580 YIKQNF 585
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 520 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 579
Query: 608 MVKESW 613
+K+++
Sbjct: 580 YIKQNF 585
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 549 HPGGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD 607
H GGT +MG + + V+ R+ G NL + PT +NP T + +A K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 608 MVKESW 613
+K+++
Sbjct: 608 YIKQNF 613
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 551 GGTCKMG-PADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMV 609
GGT +MG + + V+ R+ G NL + PT +NP T + +A K + +
Sbjct: 550 GGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYI 609
Query: 610 KESW 613
K+++
Sbjct: 610 KQNF 613
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,453,134
Number of Sequences: 62578
Number of extensions: 776542
Number of successful extensions: 1599
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1521
Number of HSP's gapped (non-prelim): 78
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)